@teselagen/ove 0.7.28 → 0.7.30-beta.1

package/annotationsToSupport.js

@@ -1,104 +0,0 @@
-import createAction from "./utils/createMetaAction";
-import createMergedDefaultStateReducer from "./utils/createMergedDefaultStateReducer";
-
-//this determines whether or not to
-const initialSupportedTypes = {
-  parts: true,
-  features: true,
-  translations: true,
-  primers: true,
-  cutsites: true,
-  orfs: true,
-  warnings: true,
-  assemblyPieces: true,
-  lineageAnnotations: true
-};
-
-// ------------------------------------
-// Actions
-// ------------------------------------
-export const annotationSupportToggle = createAction("annotationSupportToggle");
-//eg: annotationSupportToggle('features')
-export const annotationSupportOn = createAction("annotationSupportOn");
-export const annotationSupportOff = createAction("annotationSupportOff");
-
-// ------------------------------------
-// Reducer
-// ------------------------------------
-export default createMergedDefaultStateReducer(
-  {
-    [annotationSupportToggle]: (state, payload) => {
-      return {
-        ...state,
-        [payload]: !state[payload]
-      };
-    },
-    [annotationSupportOn]: (state, payload) => {
-      return {
-        ...state,
-        [payload]: false
-      };
-    },
-    [annotationSupportOff]: (state, payload) => {
-      return {
-        ...state,
-        [payload]: true
-      };
-    }
-  },
-  initialSupportedTypes
-);
-
-// import createAction from "./utils/createMetaAction";
-// import createMergedDefaultStateReducer from "./utils/createMergedDefaultStateReducer";
-
-// //this determines whether or not to
-// const initialSupportedTypes = {
-//   parts: true,
-//   features: true,
-//   translations: true,
-//   primers: true,
-//   cutsites: true,
-//   orfs: true,
-//   warnings: true,
-//   assemblyPieces: true,
-//   lineageAnnotations: true
-// };
-
-// // ------------------------------------
-// // Actions
-// // ------------------------------------
-// export const annotationSupportToggle = createAction(
-//   "ANNOTATION_SUPPORT_TOGGLE"
-// );
-
-// export const annotationSupportOn = createAction("ANNOTATION_SUPPORT_ON");
-// export const annotationSupportOff = createAction("ANNOTATION_SUPPORT_OFF");
-
-// export default function (state = initialSupportedTypes, action) {
-//   switch (action.type) {
-//     case "ANNOTATION_SUPPORT_TOGGLE":
-//       return {
-//         ...state,
-//         [action.payload]: !state[action.payload]
-//       };
-//     case "ANNOTATION_SUPPORT_ON":
-//       return {
-//         ...state,
-//         [action.payload]: true
-//       };
-//     case "ANNOTATION_SUPPORT_OFF":
-//       return {
-//         ...state,
-//         [action.payload]: false
-//       };
-//     default:
-//       if (action.mergeStateDeep) {
-//         return {
-//           ...initialSupportedTypes,
-//           ...state
-//         };
-//       }
-//       return state;
-//   }
-// }

package/arrayToObjWithIds.js

@@ -1,17 +0,0 @@
-//helper function to make sure any arrays coming in
-
-import shortid from "shortid";
-
-//get converted to objects with unique ids
-export default function arrayToObjWithIds(array) {
-  const newObj = {};
-  array.forEach(function (item) {
-    const newItem = {
-      ...item,
-      id: item.id || shortid()
-    };
-    newObj[newItem.id] = newItem;
-  });
-
-  return newObj;
-}

package/arrayUtils.js

@@ -1,19 +0,0 @@
-export function insertItem(array, item, index) {
-  return [...array.slice(0, index), item, ...array.slice(index)];
-}
-
-export function removeItem(array, i) {
-  return array.filter((_, j) => j !== Number(i));
-}
-
-export function getLowerCaseObj(obj = {}) {
-  let key;
-  const keys = Object.keys(obj);
-  let n = keys.length;
-  const newobj = {};
-  while (n--) {
-    key = keys[n];
-    newobj[key.toLowerCase()] = obj[key];
-  }
-  return newobj;
-}

package/array_move.js

@@ -1,10 +0,0 @@
-export function array_move(arr, old_index, new_index) {
-  if (new_index >= arr.length) {
-    let k = new_index - arr.length + 1;
-    while (k--) {
-      arr.push(undefined);
-    }
-  }
-  arr.splice(new_index, 0, arr.splice(old_index, 1)[0]);
-  return arr; // for testing
-}

package/calculateTickMarkPositionsForGivenRange.js

@@ -1,47 +0,0 @@
-import { normalizePositionByRangeLength as norm } from "@teselagen/range-utils";
-import { getRangeLength } from "@teselagen/range-utils";
-
-export default function calculateTickMarkPositionsForGivenRange({
-  tickSpacing: _tickSpacing = 10,
-  range,
-  sequenceLength,
-  isProtein,
-  increaseOffset
-}) {
-  if (sequenceLength === 0) {
-    return [];
-  }
-  let tickSpacing = _tickSpacing;
-  if (isProtein) {
-    tickSpacing = Math.floor((_tickSpacing / 2) * 3);
-  }
-
-  const rangeLength = getRangeLength(range, sequenceLength);
-
-  let spacer = 0;
-  if (increaseOffset) {
-    spacer = range.start;
-  }
-  const firstTickOffsetFromRangeStart =
-    spacer + tickSpacing - (range.start % tickSpacing);
-
-  const tickMarks = [];
-  if (range.start === 0) tickMarks.push(isProtein ? 2 : 0);
-  let hasCrossedOrigin;
-  for (
-    let tick = firstTickOffsetFromRangeStart - 1;
-    tick < spacer + rangeLength;
-    tick += tickSpacing
-  ) {
-    let normed = norm(tick, sequenceLength);
-    if (!hasCrossedOrigin && normed < tick) {
-      if (!(normed % 10) && normed !== 0) {
-        tick = tick - 1;
-        normed = normed - 1;
-      }
-      if (normed !== 0) hasCrossedOrigin = true;
-    }
-    tickMarks.push(normed);
-  }
-  return tickMarks;
-}

package/caretPosition.js

@@ -1,27 +0,0 @@
-import { createReducer } from "redux-act";
-import createAction from "./utils/createMetaAction";
-
-// ------------------------------------
-// Actions
-// ------------------------------------
-export const caretPositionClear = createAction("CARET_POSITION_CLEAR");
-export const caretPositionUpdate = createAction("CARET_POSITION_UPDATE");
-
-// ------------------------------------
-// Reducer
-// ------------------------------------
-export default createReducer(
-  {
-    SELECTION_LAYER_UPDATE: () => {
-      //clear the caret if the selection layer is updated!
-      return -1;
-    },
-    [caretPositionClear]: () => {
-      return -1;
-    },
-    [caretPositionUpdate]: (unused, payload) => {
-      return typeof payload === "string" ? parseInt(payload, 10) : payload;
-    }
-  },
-  -1
-);

package/cdsFeaturesSelector.js

@@ -1,9 +0,0 @@
-import { createSelector } from "reselect";
-import { filter } from "lodash-es";
-import featuresSelector from "./featuresSelector";
-
-function cdsFeaturesRawSelector(features) {
-  return filter(features, ({ type }) => type && type.toUpperCase() === "CDS");
-}
-
-export default createSelector(featuresSelector, cdsFeaturesRawSelector);

package/charWidth.js

@@ -1,22 +0,0 @@
-import { createReducer } from "redux-act";
-import createAction from "./utils/createMetaAction";
-
-// ------------------------------------
-// Actions
-// ------------------------------------
-export const updateSequenceSpacing = createAction("updateSequenceSpacing");
-
-const newVal = window.localStorage.getItem("charWidth");
-
-// ------------------------------------
-// Reducer
-// ------------------------------------
-export default createReducer(
-  {
-    [updateSequenceSpacing]: (state, payload) => {
-      localStorage.setItem("charWidth", payload);
-      return payload;
-    }
-  },
-  newVal || 9
-);

package/circular.js

@@ -1,19 +0,0 @@
-import { createReducer } from "redux-act";
-import createAction from "../utils/createMetaAction";
-
-// ------------------------------------
-// Actions
-// ------------------------------------
-export const _updateCircular = createAction("UPDATE_CIRCULAR");
-
-// ------------------------------------
-// Reducer
-// ------------------------------------
-export default createReducer(
-  {
-    [_updateCircular]: (state, payload) => {
-      return payload;
-    }
-  },
-  true
-);

package/circularSelector.js

@@ -1,4 +0,0 @@
-import sequenceDataSelector from "./sequenceDataSelector";
-export default function (state) {
-  return sequenceDataSelector(state).circular;
-}