@stupidloud/codegraph 0.7.20 → 0.9.5

package/dist/installer/targets/claude.js

@@ -1,17 +1,21 @@
 "use strict";
 /**
- * Claude Code target — the historical default. Writes:
+ * Claude Code target. Writes:
  *
- *   - MCP server entry to `~/.claude.json` (global) or
- *     `./.claude.json` (local).
+ *   - MCP server entry to `~/.claude.json` (global = user scope, loads
+ *     in every project) or `./.mcp.json` (local = project scope, the
+ *     file Claude Code actually reads for a single project). See the
+ *     scope table at https://code.claude.com/docs/en/mcp.
  *   - Permissions to `~/.claude/settings.json` (global) or
  *     `./.claude/settings.json` (local), gated on `autoAllow`.
  *   - Instructions to `~/.claude/CLAUDE.md` (global) or
  *     `./.claude/CLAUDE.md` (local).
  *
- * All paths and shapes ported verbatim from the original
- * `config-writer.ts` so existing Claude Code installs upgrade in
- * place — no migration on disk required.
+ * Earlier versions wrote the local MCP entry to `./.claude.json` — a
+ * file Claude Code never reads — so the server silently never loaded
+ * until the user manually renamed it to `.mcp.json` (issue #207). We
+ * now write `./.mcp.json` and migrate any stale `./.claude.json` entry
+ * out of the way on install and uninstall.
  */
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
@@ -49,6 +53,7 @@ var __importStar = (this && this.__importStar) || (function () {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.claudeTarget = void 0;
 exports.writeMcpEntry = writeMcpEntry;
+exports.cleanupLegacyHooks = cleanupLegacyHooks;
 exports.writePermissionsEntry = writePermissionsEntry;
 exports.writeInstructionsEntry = writeInstructionsEntry;
 const fs = __importStar(require("fs"));
@@ -62,9 +67,22 @@ function configDir(loc) {
         : path.join(process.cwd(), '.claude');
 }
 function mcpJsonPath(loc) {
+    // global → ~/.claude.json (user scope: visible in every project).
+    // local  → ./.mcp.json (project scope: the ONLY project-level MCP
+    // file Claude Code reads — NOT ./.claude.json, which it ignores).
     return loc === 'global'
         ? path.join(os.homedir(), '.claude.json')
-        : path.join(process.cwd(), '.claude.json');
+        : path.join(process.cwd(), '.mcp.json');
+}
+/**
+ * Where pre-#207 installers wrote the local MCP entry. Claude Code
+ * never reads a project-level `./.claude.json`, so we migrate the
+ * codegraph entry out of it on install and strip it on uninstall.
+ * Only the project-local path is legacy — global `~/.claude.json` is
+ * the correct user-scope location and is left untouched.
+ */
+function legacyLocalMcpPath() {
+    return path.join(process.cwd(), '.claude.json');
 }
 function settingsJsonPath(loc) {
     return path.join(configDir(loc), 'settings.json');
@@ -95,10 +113,27 @@ class ClaudeCodeTarget {
         const files = [];
         // 1. MCP server entry
         files.push(writeMcpEntry(loc));
+        // 1b. Migrate away any stale ./.claude.json left by a pre-#207
+        // local install, so the project isn't left with two competing
+        // (one dead) MCP configs.
+        if (loc === 'local') {
+            const migrated = cleanupLegacyLocalMcp();
+            if (migrated)
+                files.push(migrated);
+        }
         // 2. Permissions (only when autoAllow)
         if (opts.autoAllow) {
             files.push(writePermissionsEntry(loc));
         }
+        // 2b. Strip stale auto-sync hooks left by a pre-0.8 install. Those
+        // versions wrote `codegraph mark-dirty` / `sync-if-dirty` hooks to
+        // settings.json; both subcommands are gone from the CLI, so the
+        // Stop hook now fails every turn with "unknown command
+        // 'sync-if-dirty'". Cleaning up on install makes an upgrade
+        // self-healing. Only surfaced when something was actually removed.
+        const hookCleanup = cleanupLegacyHooks(loc);
+        if (hookCleanup.action === 'removed')
+            files.push(hookCleanup);
         // 3. CLAUDE.md instructions
         files.push(writeInstructionsEntry(loc));
         return { files };
@@ -119,6 +154,13 @@ class ClaudeCodeTarget {
         else {
             files.push({ path: mcpPath, action: 'not-found' });
         }
+        // 1b. Also strip the codegraph entry from a legacy ./.claude.json
+        // so uninstall fully reverses a pre-#207 local install.
+        if (loc === 'local') {
+            const migrated = cleanupLegacyLocalMcp();
+            if (migrated)
+                files.push(migrated);
+        }
         // 2. Permissions
         const settingsPath = settingsJsonPath(loc);
         const settings = (0, shared_1.readJsonFile)(settingsPath);
@@ -142,6 +184,14 @@ class ClaudeCodeTarget {
         else {
             files.push({ path: settingsPath, action: 'not-found' });
         }
+        // 2b. Strip any stale auto-sync hooks a pre-0.8 install left in
+        // settings.json. The hook-cleanup step was lost when the installer
+        // moved to the per-target architecture; restoring it here means
+        // uninstall — and the npm `preuninstall` hook that drives it — fully
+        // reverses a legacy install.
+        const hookCleanup = cleanupLegacyHooks(loc);
+        if (hookCleanup.action === 'removed')
+            files.push(hookCleanup);
         // 3. Instructions
         const instr = instructionsPath(loc);
         const action = (0, shared_1.removeMarkedSection)(instr, instructions_template_1.CODEGRAPH_SECTION_START, instructions_template_1.CODEGRAPH_SECTION_END);
@@ -174,9 +224,10 @@ function writeMcpEntry(loc) {
         return { path: file, action: 'unchanged' };
     }
     // 'created' here means: the file itself did not exist before this
-    // write. A pre-existing `.claude.json` containing other MCP servers
-    // (no `codegraph` key) is 'updated', not 'created' — we're adding
-    // an entry to a file that was already there. Codex uses a different
+    // write. A pre-existing MCP JSON file (`~/.claude.json` globally,
+    // `./.mcp.json` locally) containing other MCP servers (no
+    // `codegraph` key) is 'updated', not 'created' — we're adding an
+    // entry to a file that was already there. Codex uses a different
     // idiom (empty-content => 'created') because its config.toml is
     // ours alone to manage.
     const action = before ? 'updated' : (fs.existsSync(file) ? 'updated' : 'created');
@@ -186,6 +237,110 @@ function writeMcpEntry(loc) {
     (0, shared_1.writeJsonFile)(file, existing);
     return { path: file, action };
 }
+/**
+ * Strip the codegraph entry from a legacy project-local
+ * `./.claude.json` (written by pre-#207 installers, which Claude Code
+ * never read). Surgical: only our `codegraph` key is removed; sibling
+ * MCP servers and any unrelated keys are preserved, and the file is
+ * deleted only when removal leaves it completely empty. Returns the
+ * file action for reporting, or `null` when there's nothing to migrate.
+ */
+function cleanupLegacyLocalMcp() {
+    const file = legacyLocalMcpPath();
+    if (!fs.existsSync(file))
+        return null;
+    const config = (0, shared_1.readJsonFile)(file);
+    if (!config.mcpServers?.codegraph)
+        return null;
+    delete config.mcpServers.codegraph;
+    if (Object.keys(config.mcpServers).length === 0)
+        delete config.mcpServers;
+    if (Object.keys(config).length === 0) {
+        try {
+            fs.unlinkSync(file);
+        }
+        catch { /* ignore */ }
+    }
+    else {
+        (0, shared_1.writeJsonFile)(file, config);
+    }
+    return { path: file, action: 'removed' };
+}
+/**
+ * True when a Claude Code hook `command` is one of the auto-sync hooks
+ * a pre-0.8 install wrote. Those installers added
+ * `PostToolUse(Edit|Write) → codegraph mark-dirty` and
+ * `Stop → codegraph sync-if-dirty` (local builds used the
+ * `npx @colbymchenry/codegraph …` form, which still contains the
+ * `codegraph <subcommand>` substring). Both subcommands were later
+ * removed from the CLI, so the Stop hook fails every turn with
+ * "unknown command 'sync-if-dirty'". Matching on the codegraph-scoped
+ * subcommand keeps unrelated user hooks (e.g. GitKraken's
+ * `gk ai hook run`) untouched.
+ */
+function isLegacyCodegraphHookCommand(command) {
+    if (typeof command !== 'string')
+        return false;
+    return (command.includes('codegraph mark-dirty') ||
+        command.includes('codegraph sync-if-dirty'));
+}
+/**
+ * Remove stale codegraph auto-sync hooks from Claude `settings.json`.
+ *
+ * Surgical at the individual-command level: only entries matching
+ * `isLegacyCodegraphHookCommand` are dropped, so a sibling hook sharing
+ * a matcher group (or the Stop event) with ours survives. We prune a
+ * matcher group only once its `hooks` array is empty, an event only
+ * once it has no groups left, and `hooks` itself only once every event
+ * is gone — and none of that runs unless we actually removed a
+ * codegraph command, so a settings.json with no legacy hooks is left
+ * byte-for-byte untouched and reported `unchanged`.
+ *
+ * Exported so it can be unit-tested directly and reused by both
+ * `install` (an upgrade self-heals) and `uninstall`.
+ */
+function cleanupLegacyHooks(loc) {
+    const file = settingsJsonPath(loc);
+    if (!fs.existsSync(file))
+        return { path: file, action: 'not-found' };
+    const settings = (0, shared_1.readJsonFile)(file);
+    const hooks = settings.hooks;
+    if (!hooks || typeof hooks !== 'object' || Array.isArray(hooks)) {
+        return { path: file, action: 'unchanged' };
+    }
+    // Pass 1: drop the legacy command(s) from inside every matcher group.
+    let removedAny = false;
+    for (const event of Object.keys(hooks)) {
+        const groups = hooks[event];
+        if (!Array.isArray(groups))
+            continue;
+        for (const group of groups) {
+            if (!group || !Array.isArray(group.hooks))
+                continue;
+            const before = group.hooks.length;
+            group.hooks = group.hooks.filter((h) => !isLegacyCodegraphHookCommand(h?.command));
+            if (group.hooks.length !== before)
+                removedAny = true;
+        }
+    }
+    if (!removedAny)
+        return { path: file, action: 'unchanged' };
+    // Pass 2: prune empty matcher groups, then events with no groups
+    // left, then an empty top-level `hooks`. Guarded by `removedAny` so
+    // we never restructure a settings.json that had no codegraph hooks.
+    for (const event of Object.keys(hooks)) {
+        const groups = hooks[event];
+        if (!Array.isArray(groups))
+            continue;
+        hooks[event] = groups.filter((g) => !(g && Array.isArray(g.hooks) && g.hooks.length === 0));
+        if (hooks[event].length === 0)
+            delete hooks[event];
+    }
+    if (Object.keys(hooks).length === 0)
+        delete settings.hooks;
+    (0, shared_1.writeJsonFile)(file, settings);
+    return { path: file, action: 'removed' };
+}
 function writePermissionsEntry(loc) {
     const file = settingsJsonPath(loc);
     const settings = (0, shared_1.readJsonFile)(file);

package/dist/installer/targets/claude.js.map

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package/dist/installer/targets/cursor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cursor.d.ts","sourceRoot":"","sources":["../../../src/installer/targets/cursor.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;AAKH,OAAO,EACL,WAAW,EAKZ,MAAM,SAAS,CAAC;AAqMjB,eAAO,MAAM,YAAY,EAAE,WAAgC,CAAC"}
+{"version":3,"file":"cursor.d.ts","sourceRoot":"","sources":["../../../src/installer/targets/cursor.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;AAKH,OAAO,EACL,WAAW,EAKZ,MAAM,SAAS,CAAC;AAuPjB,eAAO,MAAM,YAAY,EAAE,WAAgC,CAAC"}

package/dist/installer/targets/cursor.js

@@ -145,9 +145,7 @@ class CursorTarget {
             files.push({ path: mcpPath, action: 'not-found' });
         }
         if (loc === 'local') {
-            const rules = rulesPath();
-            const action = (0, shared_1.removeMarkedSection)(rules, instructions_template_1.CODEGRAPH_SECTION_START, instructions_template_1.CODEGRAPH_SECTION_END);
-            files.push({ path: rules, action });
+            files.push(removeRulesEntry());
         }
         return { files };
     }
@@ -225,5 +223,61 @@ function writeRulesEntry() {
             : 'updated';
     return { path: file, action: mapped };
 }
+/**
+ * Remove the Cursor rules file on uninstall.
+ *
+ * Unlike the shared CLAUDE.md / AGENTS.md files (where codegraph owns
+ * only a marker-delimited section), `.cursor/rules/codegraph.mdc` is a
+ * file we create OUTRIGHT — the frontmatter is ours too. So a plain
+ * `removeMarkedSection` is wrong here: it would strip our instruction
+ * block but leave the orphaned `description: CodeGraph ...` frontmatter
+ * behind, so the file lingers and still "mentions" codegraph.
+ *
+ * Instead: strip our block, and if nothing but our own frontmatter
+ * remains, delete the whole file. Only when the user has added their
+ * own content outside our markers do we keep the file (minus our block).
+ */
+function removeRulesEntry() {
+    const file = rulesPath();
+    if (!fs.existsSync(file))
+        return { path: file, action: 'not-found' };
+    let content;
+    try {
+        content = fs.readFileSync(file, 'utf-8');
+    }
+    catch {
+        return { path: file, action: 'not-found' };
+    }
+    const ourFrontmatter = MDC_FRONTMATTER.trim();
+    const startIdx = content.indexOf(instructions_template_1.CODEGRAPH_SECTION_START);
+    const endIdx = content.indexOf(instructions_template_1.CODEGRAPH_SECTION_END);
+    // Our marked block is present — strip it, then decide what's left.
+    if (startIdx !== -1 && endIdx > startIdx) {
+        const before = content.substring(0, startIdx).trimEnd();
+        const after = content.substring(endIdx + instructions_template_1.CODEGRAPH_SECTION_END.length).trimStart();
+        const remainder = (before + (before && after ? '\n\n' : '') + after).trim();
+        if (remainder === '' || remainder === ourFrontmatter) {
+            try {
+                fs.unlinkSync(file);
+            }
+            catch { /* ignore */ }
+        }
+        else {
+            (0, shared_1.atomicWriteFileSync)(file, remainder + '\n');
+        }
+        return { path: file, action: 'removed' };
+    }
+    // No block, but the file is still our pristine frontmatter-only file
+    // — it's ours, so remove it.
+    if (content.trim() === ourFrontmatter) {
+        try {
+            fs.unlinkSync(file);
+        }
+        catch { /* ignore */ }
+        return { path: file, action: 'removed' };
+    }
+    // Foreign content we don't recognize — leave it alone.
+    return { path: file, action: 'not-found' };
+}
 exports.cursorTarget = new CursorTarget();
 //# sourceMappingURL=cursor.js.map

package/dist/installer/targets/cursor.js.map

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package/dist/installer/targets/hermes.d.ts

@@ -0,0 +1,18 @@
+/**
+ * Hermes Agent target.
+ *
+ * Hermes reads MCP servers from `$HERMES_HOME/config.yaml` under the
+ * top-level `mcp_servers` key, and exposes discovered MCP tools through
+ * dynamic toolsets named `mcp-<server>`. We add:
+ *
+ *   mcp_servers.codegraph -> `codegraph serve --mcp`
+ *   platform_toolsets.cli -> `mcp-codegraph`
+ *
+ * The second entry matters because Hermes CLI profiles often enable an
+ * explicit `platform_toolsets.cli` list. Without `mcp-codegraph` in that
+ * list, the MCP server can be configured and connected but its tools may
+ * still be filtered out of normal CLI sessions.
+ */
+import { AgentTarget } from './types';
+export declare const hermesTarget: AgentTarget;
+//# sourceMappingURL=hermes.d.ts.map

package/dist/installer/targets/hermes.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"hermes.d.ts","sourceRoot":"","sources":["../../../src/installer/targets/hermes.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAKH,OAAO,EACL,WAAW,EAKZ,MAAM,SAAS,CAAC;AAiRjB,eAAO,MAAM,YAAY,EAAE,WAAgC,CAAC"}