@skillsmith/core 0.11.5 → 0.11.6

package/dist/src/services/skill-manifest.js

@@ -5,6 +5,7 @@
  */
 import * as fs from 'fs/promises';
 import * as path from 'path';
+import { randomUUID } from 'node:crypto';
 const MANIFEST_LOCK_TIMEOUT_MS = 30000;
 const MANIFEST_LOCK_RETRY_MS = 100;
 /**
@@ -16,20 +17,64 @@ export class ManifestManager {
     constructor(manifestPath) {
         this.manifestPath = manifestPath;
     }
+    /**
+     * SMI-6007: distinguishes "no manifest yet" (ENOENT — legitimate first-run
+     * case, safe to synthesize an empty manifest) from "a manifest file exists
+     * but couldn't be read/parsed" (corrupt JSON, permission error, I/O
+     * failure). The latter used to be silently swallowed into the same empty
+     * manifest, which is a real data-loss risk: a caller that then `save()`s
+     * that empty snapshot back out would erase every previously-recorded
+     * install. Now it throws loudly instead, so a corrupt manifest surfaces as
+     * an error rather than silently wiping state on the next write.
+     */
     async load() {
+        let content;
+        try {
+            content = await fs.readFile(this.manifestPath, 'utf-8');
+        }
+        catch (error) {
+            if (error.code === 'ENOENT') {
+                return { version: '1.0.0', installedSkills: {} };
+            }
+            throw error;
+        }
         try {
-            const content = await fs.readFile(this.manifestPath, 'utf-8');
             return JSON.parse(content);
         }
-        catch {
-            return { version: '1.0.0', installedSkills: {} };
+        catch (error) {
+            throw new Error('Manifest file at ' +
+                this.manifestPath +
+                ' exists but is corrupt/unparseable: ' +
+                (error instanceof Error ? error.message : String(error)));
         }
     }
+    /**
+     * SMI-6007: the temp filename now includes a `randomUUID()` suffix (not
+     * just `process.pid`) — two concurrent `save()` calls in the same process
+     * previously collided on an identical `.tmp.<pid>` path, letting one
+     * call's temp file win the write while the other's `rename()` either
+     * clobbered it mid-flight or failed outright. Each call now owns a
+     * uniquely-named temp file for its own lifetime. The write+rename is
+     * wrapped in try/catch so a failure best-effort removes only *this
+     * invocation's* temp file before rethrowing the original error (mirrors
+     * `sqljsDriver.ts`'s `persist()`, SMI-5997) — the error is never swallowed.
+     */
     async save(manifest) {
         await fs.mkdir(path.dirname(this.manifestPath), { recursive: true });
-        const tempPath = this.manifestPath + '.tmp.' + process.pid;
-        await fs.writeFile(tempPath, JSON.stringify(manifest, null, 2));
-        await fs.rename(tempPath, this.manifestPath);
+        const tempPath = this.manifestPath + '.tmp.' + process.pid + '.' + randomUUID();
+        try {
+            await fs.writeFile(tempPath, JSON.stringify(manifest, null, 2));
+            await fs.rename(tempPath, this.manifestPath);
+        }
+        catch (error) {
+            try {
+                await fs.unlink(tempPath);
+            }
+            catch {
+                // best-effort cleanup — surface the original error either way
+            }
+            throw error;
+        }
     }
     async acquireLock() {
         const lockPath = this.manifestPath + '.lock';

package/dist/src/services/skill-manifest.js.map

@@ -1 +1 @@
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package/dist/src/services/skill-manifest.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=skill-manifest.test.d.ts.map

package/dist/src/services/skill-manifest.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"skill-manifest.test.d.ts","sourceRoot":"","sources":["../../../src/services/skill-manifest.test.ts"],"names":[],"mappings":""}

package/dist/src/services/skill-manifest.test.js

@@ -0,0 +1,202 @@
+/**
+ * @fileoverview Tests for ManifestManager concurrency hardening (SMI-6007)
+ * @module @skillsmith/core/services/skill-manifest.test
+ * @see SMI-6007: manifest write-path concurrency hardening — split out of
+ *   the flaky-test investigation SMI-6004. Two confirmed hazards:
+ *     1. performUninstall() bypassed the lock (fixed in
+ *        skill-installation.helpers.ts — see its own test coverage).
+ *     2. save() computed a temp filename from `process.pid` alone, so two
+ *        concurrent `save()` calls in the same process collided on the
+ *        identical `.tmp.<pid>` path.
+ *   Plus a load()-hardening item: distinguish "no manifest yet" (ENOENT,
+ *   legitimate first run) from "manifest exists but is corrupt/unreadable"
+ *   (should throw, not silently return an empty manifest that a later
+ *   save() could use to erase real state).
+ *
+ * These tests use a real temp directory + real fs/promises calls (not an
+ * in-memory mock) so the concurrent cases exercise actual OS-level file
+ * operations — `acquireLock()`'s `wx`-flag file creation is only
+ * meaningfully racy against real fs semantics.
+ */
+import { describe, it, expect, beforeEach, afterEach, vi } from 'vitest';
+import * as os from 'os';
+import * as path from 'path';
+// The Node ESM module namespace object is not configurable, so a plain
+// `vi.spyOn(fs, 'readFile')` throws "Cannot redefine property" under this
+// runtime. Instead, wrap the specific functions the write/rename-failure
+// tests need to override in `vi.fn(actual.fn)` at mock-registration time —
+// each defaults to forwarding to the real implementation (so every other
+// test that doesn't override them still hits the real filesystem), and
+// individual tests can layer a `mockImplementationOnce`/`mockRejectedValueOnce`
+// on top without needing `vi.spyOn`.
+vi.mock('fs/promises', async (importOriginal) => {
+    const actual = await importOriginal();
+    return {
+        ...actual,
+        readFile: vi.fn(actual.readFile),
+        writeFile: vi.fn(actual.writeFile),
+        rename: vi.fn(actual.rename),
+        unlink: vi.fn(actual.unlink),
+    };
+});
+import * as fs from 'fs/promises';
+import { ManifestManager } from './skill-manifest.js';
+// ============================================================================
+// Helpers
+// ============================================================================
+function makeEntry(overrides = {}) {
+    const now = new Date().toISOString();
+    return {
+        id: overrides.id ?? 'author/skill',
+        name: overrides.name ?? 'skill',
+        version: overrides.version ?? '1.0.0',
+        source: overrides.source ?? 'github:author/skill',
+        installPath: overrides.installPath ?? '/tmp/skill',
+        installedAt: overrides.installedAt ?? now,
+        lastUpdated: overrides.lastUpdated ?? now,
+        ...overrides,
+    };
+}
+// ============================================================================
+// Tests
+// ============================================================================
+describe('ManifestManager concurrency hardening (SMI-6007)', () => {
+    let tmpDir;
+    let manifestPath;
+    let manager;
+    beforeEach(async () => {
+        tmpDir = await fs.mkdtemp(path.join(os.tmpdir(), 'skillsmith-manifest-test-'));
+        manifestPath = path.join(tmpDir, 'manifest.json');
+        manager = new ManifestManager(manifestPath);
+    });
+    afterEach(async () => {
+        vi.clearAllMocks();
+        await fs.rm(tmpDir, { recursive: true, force: true });
+    });
+    // --------------------------------------------------------------------------
+    // Item 1: two direct save() calls overlap; neither throws (temp-file fix)
+    // --------------------------------------------------------------------------
+    describe('save() same-pid temp-file collision', () => {
+        it('two overlapping save() calls both resolve without throwing', async () => {
+            const first = {
+                version: '1.0.0',
+                installedSkills: { a: makeEntry({ id: 'a' }) },
+            };
+            const second = {
+                version: '1.0.0',
+                installedSkills: { b: makeEntry({ id: 'b' }) },
+            };
+            await expect(Promise.all([manager.save(first), manager.save(second)])).resolves.toBeDefined();
+            // Whichever write landed last, the file must be a full, valid write —
+            // never a partial/corrupt mix of the two.
+            const loaded = await manager.load();
+            expect(Object.keys(loaded.installedSkills)).toHaveLength(1);
+        });
+        it('does not leave stray .tmp.* files behind after concurrent saves', async () => {
+            await Promise.all([
+                manager.save({ version: '1.0.0', installedSkills: {} }),
+                manager.save({ version: '1.0.0', installedSkills: {} }),
+            ]);
+            const files = await fs.readdir(tmpDir);
+            expect(files.some((f) => f.includes('.tmp.'))).toBe(false);
+        });
+    });
+    // --------------------------------------------------------------------------
+    // Item 2: two concurrent updateSafely() calls on DISTINCT entries; both
+    // survive (validates the lock actually serializes correctly)
+    // --------------------------------------------------------------------------
+    describe('updateSafely() serializes concurrent updates to distinct entries', () => {
+        it('both entries survive when two updateSafely() calls run concurrently', async () => {
+            await manager.save({ version: '1.0.0', installedSkills: {} });
+            await Promise.all([
+                manager.updateSafely((m) => ({
+                    ...m,
+                    installedSkills: { ...m.installedSkills, 'skill-a': makeEntry({ id: 'skill-a' }) },
+                })),
+                manager.updateSafely((m) => ({
+                    ...m,
+                    installedSkills: { ...m.installedSkills, 'skill-b': makeEntry({ id: 'skill-b' }) },
+                })),
+            ]);
+            const loaded = await manager.load();
+            expect(Object.keys(loaded.installedSkills).sort()).toEqual(['skill-a', 'skill-b']);
+        });
+    });
+    // --------------------------------------------------------------------------
+    // Item 4: load() distinguishes ENOENT (expected first run) from a
+    // corrupt/unreadable manifest (should throw, not silently go empty)
+    // --------------------------------------------------------------------------
+    describe('load() distinguishes missing vs corrupt manifest', () => {
+        it('returns an empty manifest when the file does not exist (ENOENT — expected first run)', async () => {
+            const loaded = await manager.load();
+            expect(loaded).toEqual({ version: '1.0.0', installedSkills: {} });
+        });
+        it('throws (does not silently return an empty manifest) when the file contains unparseable JSON', async () => {
+            await fs.writeFile(manifestPath, '{ not valid json');
+            await expect(manager.load()).rejects.toThrow(/corrupt|unparseable/i);
+        });
+        it('rethrows a non-ENOENT read error (e.g. EACCES) instead of returning an empty manifest', async () => {
+            const permissionError = Object.assign(new Error('EACCES: permission denied'), {
+                code: 'EACCES',
+            });
+            vi.mocked(fs.readFile).mockRejectedValueOnce(permissionError);
+            await expect(manager.load()).rejects.toThrow('EACCES');
+        });
+    });
+    // --------------------------------------------------------------------------
+    // Item 5: inject a write/rename failure — verify the unique-temp-file
+    // cleanup removes only that invocation's own temp file and the original
+    // error still propagates (not swallowed)
+    // --------------------------------------------------------------------------
+    describe('save() write/rename failure cleanup', () => {
+        it('on a writeFile failure, the temp file is cleaned up and the original error propagates', async () => {
+            const originalError = new Error('ENOSPC: no space left on device');
+            vi.mocked(fs.writeFile).mockRejectedValueOnce(originalError);
+            await expect(manager.save({ version: '1.0.0', installedSkills: {} })).rejects.toThrow(originalError);
+            const files = await fs.readdir(tmpDir).catch(() => []);
+            expect(files.some((f) => f.includes('.tmp.'))).toBe(false);
+        });
+        it('on a rename failure, the temp file is cleaned up, the original error propagates, and the manifest is untouched', async () => {
+            await manager.save({
+                version: '1.0.0',
+                installedSkills: { existing: makeEntry({ id: 'existing' }) },
+            });
+            const originalError = new Error('EPERM: operation not permitted');
+            vi.mocked(fs.rename).mockRejectedValueOnce(originalError);
+            await expect(manager.save({ version: '1.0.0', installedSkills: { other: makeEntry({ id: 'other' }) } })).rejects.toThrow(originalError);
+            const loaded = await manager.load();
+            expect(Object.keys(loaded.installedSkills)).toEqual(['existing']);
+            const files = await fs.readdir(tmpDir);
+            expect(files.some((f) => f.includes('.tmp.'))).toBe(false);
+        });
+        it('a failed save() only removes its own temp file, leaving a concurrently in-flight one untouched', async () => {
+            // call A's rename fails and must be cleaned up; call B's rename must
+            // succeed normally. Because each call's temp filename is now
+            // per-invocation-unique (SMI-6007), A's cleanup cannot touch B's file.
+            // mockRejectedValueOnce queues exactly one rejection ahead of the
+            // default (real) implementation, so whichever of the two concurrent
+            // renames happens to run first gets it — order isn't asserted below.
+            vi.mocked(fs.rename).mockRejectedValueOnce(new Error('simulated rename failure for call A'));
+            const callA = manager.save({
+                version: '1.0.0',
+                installedSkills: { a: makeEntry({ id: 'a' }) },
+            });
+            const callB = manager.save({
+                version: '1.0.0',
+                installedSkills: { b: makeEntry({ id: 'b' }) },
+            });
+            const results = await Promise.allSettled([callA, callB]);
+            // Order between the two concurrent calls isn't guaranteed by real fs
+            // I/O scheduling — assert the invariant that matters: exactly one
+            // call's rename failed (and was cleaned up), the other succeeded, and
+            // no cross-contamination between their distinct temp files occurred.
+            const rejected = results.filter((r) => r.status === 'rejected');
+            const fulfilled = results.filter((r) => r.status === 'fulfilled');
+            expect(rejected).toHaveLength(1);
+            expect(fulfilled).toHaveLength(1);
+            const files = await fs.readdir(tmpDir);
+            expect(files.some((f) => f.includes('.tmp.'))).toBe(false);
+        });
+    });
+});
+//# sourceMappingURL=skill-manifest.test.js.map

package/dist/src/services/skill-manifest.test.js.map

@@ -0,0 +1 @@
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package/dist/src/types/skill.d.ts

@@ -113,6 +113,16 @@ export interface SearchOptions {
     category?: string;
     safeOnly?: boolean;
     maxRiskScore?: number;
+    /**
+     * SMI-5929: wanted compatibility slugs (e.g. ['cursor']), forwarded to the
+     * skills-search edge function as the `compatibility` CSV query param so it
+     * can rank (and widen its own DB fetch) BEFORE applying LIMIT/OFFSET —
+     * see packages/mcp-server/src/tools/search.helpers.ts's sortByCompatRank
+     * doc and supabase/functions/skills-search/compatibility.ts. Omitted /
+     * empty means no compat filter is active (identical to pre-SMI-5929
+     * behavior).
+     */
+    compatibility?: string[];
 }
 export interface SearchResult {
     skill: Skill;

package/dist/src/types/skill.d.ts.map

@@ -1 +1 @@
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package/dist/src/types.d.ts

@@ -142,12 +142,16 @@ export interface SearchResponse {
     query: string;
     filters: SearchFilters;
     /**
-     * SMI-5178: results on this page hidden by the compatibility filter — the
-     * restrictive cross-tool default (explicit SKILLSMITH_CLIENT) or an explicit
-     * `compatible_with`. 0 / absent when no compat filter applied. `[]`/unknown
-     * rows are never hidden (they always surface).
+     * SMI-5929: count of rank-2 (declared-compatible with OTHER tools only)
+     * results present on THIS returned page — 0 / absent when no compat
+     * filter applied (the restrictive cross-tool default via SKILLSMITH_CLIENT,
+     * or an explicit `compatible_with`). Renamed from `compatibilityHidden`
+     * (SMI-5178): the compatibility filter is now a RANKING signal, not an
+     * exclusion — rank-2 rows are deprioritized (sorted after rank-0/rank-1)
+     * but never dropped, so "hidden" was no longer accurate. `[]`/unknown rows
+     * are always rank 1 and never counted here.
      */
-    compatibilityHidden?: number;
+    compatibilityDeprioritized?: number;
     /**
      * SMI-5178: results on this page hidden by the default-ON installable filter.
      * Present when discovery-only entries were filtered out. Pass

package/dist/src/types.d.ts.map

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package/dist/tests/db/migration-runner-race.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=migration-runner-race.test.d.ts.map

package/dist/tests/db/migration-runner-race.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"migration-runner-race.test.d.ts","sourceRoot":"","sources":["../../../tests/db/migration-runner-race.test.ts"],"names":[],"mappings":""}

package/dist/tests/db/migration-runner-race.test.js

@@ -0,0 +1,75 @@
+/**
+ * SMI-6003: regression test for the unguarded concurrent-migration race in
+ * runMigrations() (packages/core/src/db/migration-runner.ts).
+ *
+ * Two processes opening the same fresh DB concurrently can both read
+ * currentVersion = getSchemaVersion(db) BEFORE either has stamped a row,
+ * both decide the same migration is pending, and the loser's plain
+ * `INSERT INTO schema_version (version) VALUES (?)` throws `UNIQUE
+ * constraint failed: schema_version.version`. This is the exact real-world
+ * failure crash-handler-integration.test.ts's SMI-5999 fix sidesteps by
+ * isolating each spawned mcp-server process's HOME — that test proves the
+ * SYMPTOM is contained by isolation; this test proves the underlying
+ * migration-runner bug itself is fixed, independent of any caller-side
+ * isolation.
+ *
+ * Genuine concurrency is required to reproduce this — see
+ * migration-runner-race-child.mjs's header for why a single-process
+ * Promise.all() over synchronous better-sqlite3 calls cannot do it. This
+ * spawns two REAL child processes (same established pattern as
+ * owned-lock-lost-update.test.ts), each opening its own connection to the
+ * same DB file, barrier-synced so both call the real `runMigrations()` at
+ * effectively the same instant.
+ */
+import { describe, it, expect } from 'vitest';
+import { spawn } from 'node:child_process';
+import { mkdirSync, rmSync } from 'node:fs';
+import * as os from 'node:os';
+import * as path from 'node:path';
+import { fileURLToPath } from 'node:url';
+import { createDatabaseSync } from '../../src/db/createDatabase.js';
+import { SCHEMA_SQL } from '../../src/db/schema-sql.js';
+import { closeDatabase } from '../../src/db/schema.js';
+import { isBetterSqlite3Available } from '../../src/db/drivers/betterSqlite3Driver.js';
+// Evaluated once at module load — used by describe.skipIf() to skip this
+// suite when the native SQLite driver is unavailable (e.g. WASM fallback
+// mode); the race under test is specific to a real, file-backed SQLite
+// connection shared across processes, not the in-memory WASM driver.
+const skipIfNoSqlite = !isBetterSqlite3Available();
+const testDir = path.dirname(fileURLToPath(import.meta.url));
+const childPath = path.join(testDir, '..', 'helpers', 'migration-runner-race-child.mjs');
+function spawnChild(dbPath, barrierDir, id) {
+    return new Promise((resolve) => {
+        const child = spawn(process.execPath, ['--import', 'tsx', childPath, dbPath, barrierDir, String(id)], { stdio: ['ignore', 'ignore', 'pipe'] });
+        let stderr = '';
+        child.stderr.on('data', (d) => (stderr += d.toString()));
+        child.on('exit', (code) => resolve({ code, stderr }));
+    });
+}
+describe.skipIf(skipIfNoSqlite)('SMI-6003 runMigrations concurrent-migration race', () => {
+    it('two concurrent runMigrations() calls against the same fresh DB file do not throw', async () => {
+        const dir = path.join(os.tmpdir(), `migration-runner-race-${Date.now()}-${Math.random().toString(36).slice(2)}`);
+        mkdirSync(dir, { recursive: true });
+        const dbPath = path.join(dir, 'race.db');
+        // Set up a "fresh" DB already stamped at v16 — only migration v17 (the
+        // last entry in MIGRATIONS) is pending, so BOTH children will race to
+        // apply and INSERT the exact same version row. This isolates the test
+        // to the check-then-act bug itself (one contested INSERT) rather than
+        // incidental concurrent DDL from re-running the full 17-migration chain
+        // (which would also happen to trip the same bug, just less
+        // deterministically — v17's own apply() short-circuits to a cheap SELECT
+        // probe on a fresh SCHEMA_SQL base, since the base schema already
+        // includes 'curated' in the trust_tier CHECK — see
+        // migrations/v17-curated-trust-tier.ts).
+        const setupDb = createDatabaseSync(dbPath);
+        setupDb.exec(SCHEMA_SQL);
+        setupDb.prepare('INSERT INTO schema_version (version) VALUES (16)').run();
+        closeDatabase(setupDb);
+        const results = await Promise.all([spawnChild(dbPath, dir, 0), spawnChild(dbPath, dir, 1)]);
+        for (const r of results) {
+            expect(r.code, `child stderr:\n${r.stderr}`).toBe(0);
+        }
+        rmSync(dir, { recursive: true, force: true });
+    }, 30_000);
+});
+//# sourceMappingURL=migration-runner-race.test.js.map

package/dist/tests/db/migration-runner-race.test.js.map

@@ -0,0 +1 @@
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package/dist/tests/db/schema-async.test.js

@@ -6,7 +6,7 @@
  * correctly with automatic driver selection.
  */
 import { describe, it, expect, afterEach } from 'vitest';
-import { existsSync, unlinkSync, mkdirSync, rmSync } from 'node:fs';
+import { existsSync, unlinkSync, mkdirSync, rmSync, writeFileSync } from 'node:fs';
 import { join } from 'node:path';
 import { tmpdir } from 'node:os';
 import { createDatabaseAsync, openDatabaseAsync, closeDatabase, getSchemaVersion, SCHEMA_VERSION, } from '../../src/db/schema.js';
@@ -235,6 +235,42 @@ describe('Async Schema Functions (SMI-2206)', () => {
             expect(version).toBe(SCHEMA_VERSION);
         });
     });
+    describe('openDatabaseAsync — empty/corrupt database detection (SMI-5997)', () => {
+        it('throws an actionable error for a 0-byte file (no tables, no schema_version)', async () => {
+            if (!isBetterSqlite3Available()) {
+                console.log('Skipping test: no SQLite driver available');
+                return;
+            }
+            mkdirSync(TEST_DIR, { recursive: true });
+            const testPath = join(TEST_DIR, `test-empty-corrupt-${Date.now()}.db`);
+            testPaths.push(testPath);
+            // Reproduces the SMI-5997 incident: a 0-byte file left behind by an
+            // interrupted persist() (or any other truncation). SQLite treats a
+            // 0-byte file as a valid, openable, empty database, so this must be
+            // caught by schema.ts's zero-table check rather than SQLITE_CANTOPEN.
+            writeFileSync(testPath, Buffer.alloc(0));
+            await expect(openDatabaseAsync(testPath)).rejects.toThrow(/empty or corrupt/);
+        });
+        it('still treats a file with real tables but no schema_version as a legacy import', async () => {
+            if (!isBetterSqlite3Available()) {
+                console.log('Skipping test: no SQLite driver available');
+                return;
+            }
+            mkdirSync(TEST_DIR, { recursive: true });
+            const testPath = join(TEST_DIR, `test-legacy-import-${Date.now()}.db`);
+            testPaths.push(testPath);
+            // Build a database with a table but no schema_version, without going
+            // through createDatabaseAsync (which would stamp schema_version itself).
+            const seedDb = await createDatabaseAsync(testPath);
+            seedDb.exec('DROP TABLE schema_version');
+            closeDatabase(seedDb);
+            const db = await openDatabaseAsync(testPath);
+            testDatabases.push(db);
+            expect(db.open).toBe(true);
+            const version = getSchemaVersion(db);
+            expect(version).toBe(SCHEMA_VERSION);
+        });
+    });
     describe('FTS5 functionality with async creation', () => {
         it('should sync FTS on insert', async () => {
             if (!isBetterSqlite3Available()) {

package/dist/tests/db/schema-async.test.js.map

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