@sjcrh/proteinpaint-server 2.44.0 → 2.46.1

package/genome/cgc.js

@@ -1,7 +1,743 @@
-"use strict";
-/*
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.CancerGeneCensusLst = void 0;
-var text = "\nA1CF\nABI1\nABL1\nABL2\nACKR3\nACSL3\nACSL6\nACVR1\nACVR1B\nACVR2A\nAFDN\nAFF1\nAFF3\nAFF4\nAKAP9\nAKT1\nAKT2\nAKT3\nALDH2\nALK\nAMER1\nANK1\nAPC\nAPOBEC3B\nAR\nARAF\nARHGAP26\nARHGAP35\nARHGAP5\nARHGEF10\nARHGEF10L\nARHGEF12\nARID1A\nARID1B\nARID2\nARNT\nASPM\nASPSCR1\nASXL1\nASXL2\nATF1\nATIC\nATM\nATP1A1\nATP2B3\nATR\nATRX\nAXIN1\nAXIN2\nB2M\nBAP1\nBARD1\nBAX\nBAZ1A\nBCL10\nBCL11A\nBCL11B\nBCL2\nBCL2L12\nBCL3\nBCL6\nBCL7A\nBCL9\nBCL9L\nBCLAF1\nBCOR\nBCORL1\nBCR\nBIRC3\nBIRC6\nBLM\nBMP5\nBMPR1A\nBRAF\nBRCA1\nBRCA2\nBRD3\nBRD4\nBRIP1\nBTG1\nBTG2\nBTK\nBUB1B\nC15orf65\nCACNA1D\nCALR\nCAMTA1\nCANT1\nCARD11\nCARS\nCASP3\nCASP8\nCASP9\nCBFA2T3\nCBFB\nCBL\nCBLB\nCBLC\nCCDC6\nCCNB1IP1\nCCNC\nCCND1\nCCND2\nCCND3\nCCNE1\nCCR4\nCCR7\nCD209\nCD274\nCD28\nCD74\nCD79A\nCD79B\nCDC73\nCDH1\nCDH10\nCDH11\nCDH17\nCDK12\nCDK4\nCDK6\nCDKN1A\nCDKN1B\nCDKN2A\nCDKN2C\nCDX2\nCEBPA\nCEP89\nCHCHD7\nCHD2\nCHD4\nCHEK2\nCHIC2\nCHST11\nCIC\nCIITA\nCLIP1\nCLP1\nCLTC\nCLTCL1\nCNBD1\nCNBP\nCNOT3\nCNTNAP2\nCNTRL\nCOL1A1\nCOL2A1\nCOL3A1\nCOX6C\nCPEB3\nCREB1\nCREB3L1\nCREB3L2\nCREBBP\nCRLF2\nCRNKL1\nCRTC1\nCRTC3\nCSF1R\nCSF3R\nCSMD3\nCTCF\nCTNNA1\nCTNNA2\nCTNNB1\nCTNND1\nCTNND2\nCUL3\nCUX1\nCXCR4\nCYLD\nCYP2C8\nCYSLTR2\nDAXX\nDCAF12L2\nDCC\nDCTN1\nDDB2\nDDIT3\nDDR2\nDDX10\nDDX3X\nDDX5\nDDX6\nDEK\nDGCR8\nDICER1\nDNAJB1\nDNM2\nDNMT3A\nDROSHA\nDUX4L1\nEBF1\nECT2L\nEED\nEGFR\nEIF1AX\nEIF3E\nEIF4A2\nELF3\nELF4\nELK4\nELL\nELN\nEML4\nEP300\nEPAS1\nEPHA3\nEPHA7\nEPS15\nERBB2\nERBB3\nERBB4\nERC1\nERCC2\nERCC3\nERCC4\nERCC5\nERG\nESR1\nETNK1\nETV1\nETV4\nETV5\nETV6\nEWSR1\nEXT1\nEXT2\nEZH2\nEZR\nFADD\nFAM131B\nFAM135B\nFAM47C\nFANCA\nFANCC\nFANCD2\nFANCE\nFANCF\nFANCG\nFAS\nFAT1\nFAT3\nFAT4\nFBLN2\nFBXO11\nFBXW7\nFCGR2B\nFCRL4\nFEN1\nFES\nFEV\nFGFR1\nFGFR1OP\nFGFR2\nFGFR3\nFGFR4\nFH\nFHIT\nFIP1L1\nFKBP9\nFLCN\nFLI1\nFLNA\nFLT3\nFLT4\nFNBP1\nFOXA1\nFOXL2\nFOXO1\nFOXO3\nFOXO4\nFOXP1\nFOXR1\nFSTL3\nFUBP1\nFUS\nGAS7\nGATA1\nGATA2\nGATA3\nGLI1\nGMPS\nGNA11\nGNAQ\nGNAS\nGOLGA5\nGOLPH3\nGOPC\nGPC3\nGPC5\nGPHN\nGRIN2A\nGRM3\nH3F3A\nH3F3B\nHERPUD1\nHEY1\nHIF1A\nHIP1\nHIST1H3B\nHIST1H4I\nHLA-A\nHLF\nHMGA1\nHMGA2\nHMGN2P46\nHNF1A\nHNRNPA2B1\nHOOK3\nHOXA11\nHOXA13\nHOXA9\nHOXC11\nHOXC13\nHOXD11\nHOXD13\nHRAS\nHSP90AA1\nHSP90AB1\nID3\nIDH1\nIDH2\nIGF2BP2\nIGH\nIGK\nIGL\nIKBKB\nIKZF1\nIKZF3\nIL2\nIL21R\nIL6ST\nIL7R\nIRF4\nIRS4\nISX\nITGAV\nITK\nJAK1\nJAK2\nJAK3\nJAZF1\nJUN\nKAT6A\nKAT6B\nKAT7\nKCNJ5\nKDM5A\nKDM5C\nKDM6A\nKDR\nKDSR\nKEAP1\nKIAA1549\nKIF5B\nKIT\nKLF4\nKLF6\nKLK2\nKMT2A\nKMT2C\nKMT2D\nKNL1\nKNSTRN\nKRAS\nKTN1\nLARP4B\nLASP1\nLATS1\nLATS2\nLCK\nLCP1\nLEF1\nLEPROTL1\nLHFPL6\nLIFR\nLMNA\nLMO1\nLMO2\nLPP\nLRIG3\nLRP1B\nLSM14A\nLYL1\nLYN\nLZTR1\nMACC1\nMAF\nMAFB\nMALAT1\nMALT1\nMAML2\nMAP2K1\nMAP2K2\nMAP2K4\nMAP3K1\nMAP3K13\nMAPK1\nMAX\nMB21D2\nMDM2\nMDM4\nMDS2\nMECOM\nMED12\nMEN1\nMET\nMGMT\nMITF\nMLF1\nMLH1\nMLLT1\nMLLT10\nMLLT11\nMLLT3\nMLLT6\nMN1\nMNX1\nMPL\nMRTFA\nMSH2\nMSH6\nMSI2\nMSN\nMTCP1\nMTOR\nMUC1\nMUC16\nMUC4\nMUTYH\nMYB\nMYC\nMYCL\nMYCN\nMYD88\nMYH11\nMYH9\nMYO5A\nMYOD1\nN4BP2\nNAB2\nNACA\nNBEA\nNBN\nNCKIPSD\nNCOA1\nNCOA2\nNCOA4\nNCOR1\nNCOR2\nNDRG1\nNF1\nNF2\nNFATC2\nNFE2L2\nNFIB\nNFKB2\nNFKBIE\nNIN\nNKX2-1\nNONO\nNOTCH1\nNOTCH2\nNPM1\nNR4A3\nNRAS\nNRG1\nNSD1\nNSD2\nNSD3\nNT5C2\nNTHL1\nNTRK1\nNTRK2\nNTRK3\nNUMA1\nNUP214\nNUP98\nNUTM1\nNUTM2B\nNUTM2D\nOLIG2\nOMD\nP2RY8\nPABPC1\nPAFAH1B2\nPALB2\nPATZ1\nPAX3\nPAX5\nPAX7\nPAX8\nPBRM1\nPBX1\nPCBP1\nPCM1\nPDCD1LG2\nPDE4DIP\nPDGFB\nPDGFRA\nPDGFRB\nPER1\nPHF6\nPHOX2B\nPICALM\nPIK3CA\nPIK3CB\nPIK3R1\nPIM1\nPLAG1\nPLCG1\nPML\nPMS1\nPMS2\nPOLD1\nPOLE\nPOLG\nPOLQ\nPOLR2A\nPOT1\nPOU2AF1\nPOU5F1\nPPARG\nPPFIBP1\nPPM1D\nPPP2R1A\nPPP6C\nPRCC\nPRDM1\nPRDM16\nPRDM2\nPREX2\nPRF1\nPRKACA\nPRKAR1A\nPRKCB\nPRKD1\nPRPF40B\nPRRX1\nPSIP1\nPTCH1\nPTEN\nPTK6\nPTPN11\nPTPN13\nPTPN6\nPTPRB\nPTPRC\nPTPRD\nPTPRK\nPTPRT\nPWWP2A\nQKI\nRABEP1\nRAC1\nRAD17\nRAD21\nRAD51B\nRAF1\nRALGDS\nRANBP2\nRAP1GDS1\nRARA\nRB1\nRBM10\nRBM15\nRECQL4\nREL\nRET\nRFWD3\nRGPD3\nRGS7\nRHOA\nRHOH\nRMI2\nRNF213\nRNF43\nROBO2\nROS1\nRPL10\nRPL22\nRPL5\nRPN1\nRSPO2\nRSPO3\nRUNX1\nRUNX1T1\nS100A7\nSALL4\nSBDS\nSDC4\nSDHA\nSDHAF2\nSDHB\nSDHC\nSDHD\nSEPT5\nSEPT6\nSEPT9\nSET\nSETBP1\nSETD1B\nSETD2\nSETDB1\nSF3B1\nSFPQ\nSFRP4\nSGK1\nSH2B3\nSH3GL1\nSHTN1\nSIRPA\nSIX1\nSIX2\nSKI\nSLC34A2\nSLC45A3\nSMAD2\nSMAD3\nSMAD4\nSMARCA4\nSMARCB1\nSMARCD1\nSMARCE1\nSMC1A\nSMO\nSND1\nSNX29\nSOCS1\nSOX2\nSOX21\nSPECC1\nSPEN\nSPOP\nSRC\nSRGAP3\nSRSF2\nSRSF3\nSS18\nSS18L1\nSSX1\nSSX2\nSSX4\nSTAG1\nSTAG2\nSTAT3\nSTAT5B\nSTAT6\nSTIL\nSTK11\nSTRN\nSUB1\nSUFU\nSUZ12\nSYK\nTAF15\nTAL1\nTAL2\nTBL1XR1\nTBX3\nTCEA1\nTCF12\nTCF3\nTCF7L2\nTCL1A\nTEC\nTENT5C\nTERT\nTET1\nTET2\nTFE3\nTFEB\nTFG\nTFPT\nTFRC\nTGFBR2\nTHRAP3\nTLX1\nTLX3\nTMEM127\nTMPRSS2\nTMSB4X\nTNC\nTNFAIP3\nTNFRSF14\nTNFRSF17\nTOP1\nTP53\nTP63\nTPM3\nTPM4\nTPR\nTRA\nTRAF7\nTRB\nTRD\nTRIM24\nTRIM27\nTRIM33\nTRIP11\nTRRAP\nTSC1\nTSC2\nTSHR\nU2AF1\nUBR5\nUSP44\nUSP6\nUSP8\nUSP9X\nVAV1\nVHL\nVTI1A\nWAS\nWDCP\nWIF1\nWNK2\nWRN\nWT1\nWWTR1\nXPA\nXPC\nXPO1\nYWHAE\nZBTB16\nZCCHC8\nZEB1\nZFHX3\nZMYM2\nZMYM3\nZNF331\nZNF384\nZNF429\nZNF479\nZNF521\nZNRF3\nZRSR2";
-exports.CancerGeneCensusLst = text.trim().split('\n');
+const text = `
+A1CF
+ABI1
+ABL1
+ABL2
+ACKR3
+ACSL3
+ACSL6
+ACVR1
+ACVR1B
+ACVR2A
+AFDN
+AFF1
+AFF3
+AFF4
+AKAP9
+AKT1
+AKT2
+AKT3
+ALDH2
+ALK
+AMER1
+ANK1
+APC
+APOBEC3B
+AR
+ARAF
+ARHGAP26
+ARHGAP35
+ARHGAP5
+ARHGEF10
+ARHGEF10L
+ARHGEF12
+ARID1A
+ARID1B
+ARID2
+ARNT
+ASPM
+ASPSCR1
+ASXL1
+ASXL2
+ATF1
+ATIC
+ATM
+ATP1A1
+ATP2B3
+ATR
+ATRX
+AXIN1
+AXIN2
+B2M
+BAP1
+BARD1
+BAX
+BAZ1A
+BCL10
+BCL11A
+BCL11B
+BCL2
+BCL2L12
+BCL3
+BCL6
+BCL7A
+BCL9
+BCL9L
+BCLAF1
+BCOR
+BCORL1
+BCR
+BIRC3
+BIRC6
+BLM
+BMP5
+BMPR1A
+BRAF
+BRCA1
+BRCA2
+BRD3
+BRD4
+BRIP1
+BTG1
+BTG2
+BTK
+BUB1B
+C15orf65
+CACNA1D
+CALR
+CAMTA1
+CANT1
+CARD11
+CARS
+CASP3
+CASP8
+CASP9
+CBFA2T3
+CBFB
+CBL
+CBLB
+CBLC
+CCDC6
+CCNB1IP1
+CCNC
+CCND1
+CCND2
+CCND3
+CCNE1
+CCR4
+CCR7
+CD209
+CD274
+CD28
+CD74
+CD79A
+CD79B
+CDC73
+CDH1
+CDH10
+CDH11
+CDH17
+CDK12
+CDK4
+CDK6
+CDKN1A
+CDKN1B
+CDKN2A
+CDKN2C
+CDX2
+CEBPA
+CEP89
+CHCHD7
+CHD2
+CHD4
+CHEK2
+CHIC2
+CHST11
+CIC
+CIITA
+CLIP1
+CLP1
+CLTC
+CLTCL1
+CNBD1
+CNBP
+CNOT3
+CNTNAP2
+CNTRL
+COL1A1
+COL2A1
+COL3A1
+COX6C
+CPEB3
+CREB1
+CREB3L1
+CREB3L2
+CREBBP
+CRLF2
+CRNKL1
+CRTC1
+CRTC3
+CSF1R
+CSF3R
+CSMD3
+CTCF
+CTNNA1
+CTNNA2
+CTNNB1
+CTNND1
+CTNND2
+CUL3
+CUX1
+CXCR4
+CYLD
+CYP2C8
+CYSLTR2
+DAXX
+DCAF12L2
+DCC
+DCTN1
+DDB2
+DDIT3
+DDR2
+DDX10
+DDX3X
+DDX5
+DDX6
+DEK
+DGCR8
+DICER1
+DNAJB1
+DNM2
+DNMT3A
+DROSHA
+DUX4L1
+EBF1
+ECT2L
+EED
+EGFR
+EIF1AX
+EIF3E
+EIF4A2
+ELF3
+ELF4
+ELK4
+ELL
+ELN
+EML4
+EP300
+EPAS1
+EPHA3
+EPHA7
+EPS15
+ERBB2
+ERBB3
+ERBB4
+ERC1
+ERCC2
+ERCC3
+ERCC4
+ERCC5
+ERG
+ESR1
+ETNK1
+ETV1
+ETV4
+ETV5
+ETV6
+EWSR1
+EXT1
+EXT2
+EZH2
+EZR
+FADD
+FAM131B
+FAM135B
+FAM47C
+FANCA
+FANCC
+FANCD2
+FANCE
+FANCF
+FANCG
+FAS
+FAT1
+FAT3
+FAT4
+FBLN2
+FBXO11
+FBXW7
+FCGR2B
+FCRL4
+FEN1
+FES
+FEV
+FGFR1
+FGFR1OP
+FGFR2
+FGFR3
+FGFR4
+FH
+FHIT
+FIP1L1
+FKBP9
+FLCN
+FLI1
+FLNA
+FLT3
+FLT4
+FNBP1
+FOXA1
+FOXL2
+FOXO1
+FOXO3
+FOXO4
+FOXP1
+FOXR1
+FSTL3
+FUBP1
+FUS
+GAS7
+GATA1
+GATA2
+GATA3
+GLI1
+GMPS
+GNA11
+GNAQ
+GNAS
+GOLGA5
+GOLPH3
+GOPC
+GPC3
+GPC5
+GPHN
+GRIN2A
+GRM3
+H3F3A
+H3F3B
+HERPUD1
+HEY1
+HIF1A
+HIP1
+HIST1H3B
+HIST1H4I
+HLA-A
+HLF
+HMGA1
+HMGA2
+HMGN2P46
+HNF1A
+HNRNPA2B1
+HOOK3
+HOXA11
+HOXA13
+HOXA9
+HOXC11
+HOXC13
+HOXD11
+HOXD13
+HRAS
+HSP90AA1
+HSP90AB1
+ID3
+IDH1
+IDH2
+IGF2BP2
+IGH
+IGK
+IGL
+IKBKB
+IKZF1
+IKZF3
+IL2
+IL21R
+IL6ST
+IL7R
+IRF4
+IRS4
+ISX
+ITGAV
+ITK
+JAK1
+JAK2
+JAK3
+JAZF1
+JUN
+KAT6A
+KAT6B
+KAT7
+KCNJ5
+KDM5A
+KDM5C
+KDM6A
+KDR
+KDSR
+KEAP1
+KIAA1549
+KIF5B
+KIT
+KLF4
+KLF6
+KLK2
+KMT2A
+KMT2C
+KMT2D
+KNL1
+KNSTRN
+KRAS
+KTN1
+LARP4B
+LASP1
+LATS1
+LATS2
+LCK
+LCP1
+LEF1
+LEPROTL1
+LHFPL6
+LIFR
+LMNA
+LMO1
+LMO2
+LPP
+LRIG3
+LRP1B
+LSM14A
+LYL1
+LYN
+LZTR1
+MACC1
+MAF
+MAFB
+MALAT1
+MALT1
+MAML2
+MAP2K1
+MAP2K2
+MAP2K4
+MAP3K1
+MAP3K13
+MAPK1
+MAX
+MB21D2
+MDM2
+MDM4
+MDS2
+MECOM
+MED12
+MEN1
+MET
+MGMT
+MITF
+MLF1
+MLH1
+MLLT1
+MLLT10
+MLLT11
+MLLT3
+MLLT6
+MN1
+MNX1
+MPL
+MRTFA
+MSH2
+MSH6
+MSI2
+MSN
+MTCP1
+MTOR
+MUC1
+MUC16
+MUC4
+MUTYH
+MYB
+MYC
+MYCL
+MYCN
+MYD88
+MYH11
+MYH9
+MYO5A
+MYOD1
+N4BP2
+NAB2
+NACA
+NBEA
+NBN
+NCKIPSD
+NCOA1
+NCOA2
+NCOA4
+NCOR1
+NCOR2
+NDRG1
+NF1
+NF2
+NFATC2
+NFE2L2
+NFIB
+NFKB2
+NFKBIE
+NIN
+NKX2-1
+NONO
+NOTCH1
+NOTCH2
+NPM1
+NR4A3
+NRAS
+NRG1
+NSD1
+NSD2
+NSD3
+NT5C2
+NTHL1
+NTRK1
+NTRK2
+NTRK3
+NUMA1
+NUP214
+NUP98
+NUTM1
+NUTM2B
+NUTM2D
+OLIG2
+OMD
+P2RY8
+PABPC1
+PAFAH1B2
+PALB2
+PATZ1
+PAX3
+PAX5
+PAX7
+PAX8
+PBRM1
+PBX1
+PCBP1
+PCM1
+PDCD1LG2
+PDE4DIP
+PDGFB
+PDGFRA
+PDGFRB
+PER1
+PHF6
+PHOX2B
+PICALM
+PIK3CA
+PIK3CB
+PIK3R1
+PIM1
+PLAG1
+PLCG1
+PML
+PMS1
+PMS2
+POLD1
+POLE
+POLG
+POLQ
+POLR2A
+POT1
+POU2AF1
+POU5F1
+PPARG
+PPFIBP1
+PPM1D
+PPP2R1A
+PPP6C
+PRCC
+PRDM1
+PRDM16
+PRDM2
+PREX2
+PRF1
+PRKACA
+PRKAR1A
+PRKCB
+PRKD1
+PRPF40B
+PRRX1
+PSIP1
+PTCH1
+PTEN
+PTK6
+PTPN11
+PTPN13
+PTPN6
+PTPRB
+PTPRC
+PTPRD
+PTPRK
+PTPRT
+PWWP2A
+QKI
+RABEP1
+RAC1
+RAD17
+RAD21
+RAD51B
+RAF1
+RALGDS
+RANBP2
+RAP1GDS1
+RARA
+RB1
+RBM10
+RBM15
+RECQL4
+REL
+RET
+RFWD3
+RGPD3
+RGS7
+RHOA
+RHOH
+RMI2
+RNF213
+RNF43
+ROBO2
+ROS1
+RPL10
+RPL22
+RPL5
+RPN1
+RSPO2
+RSPO3
+RUNX1
+RUNX1T1
+S100A7
+SALL4
+SBDS
+SDC4
+SDHA
+SDHAF2
+SDHB
+SDHC
+SDHD
+SEPT5
+SEPT6
+SEPT9
+SET
+SETBP1
+SETD1B
+SETD2
+SETDB1
+SF3B1
+SFPQ
+SFRP4
+SGK1
+SH2B3
+SH3GL1
+SHTN1
+SIRPA
+SIX1
+SIX2
+SKI
+SLC34A2
+SLC45A3
+SMAD2
+SMAD3
+SMAD4
+SMARCA4
+SMARCB1
+SMARCD1
+SMARCE1
+SMC1A
+SMO
+SND1
+SNX29
+SOCS1
+SOX2
+SOX21
+SPECC1
+SPEN
+SPOP
+SRC
+SRGAP3
+SRSF2
+SRSF3
+SS18
+SS18L1
+SSX1
+SSX2
+SSX4
+STAG1
+STAG2
+STAT3
+STAT5B
+STAT6
+STIL
+STK11
+STRN
+SUB1
+SUFU
+SUZ12
+SYK
+TAF15
+TAL1
+TAL2
+TBL1XR1
+TBX3
+TCEA1
+TCF12
+TCF3
+TCF7L2
+TCL1A
+TEC
+TENT5C
+TERT
+TET1
+TET2
+TFE3
+TFEB
+TFG
+TFPT
+TFRC
+TGFBR2
+THRAP3
+TLX1
+TLX3
+TMEM127
+TMPRSS2
+TMSB4X
+TNC
+TNFAIP3
+TNFRSF14
+TNFRSF17
+TOP1
+TP53
+TP63
+TPM3
+TPM4
+TPR
+TRA
+TRAF7
+TRB
+TRD
+TRIM24
+TRIM27
+TRIM33
+TRIP11
+TRRAP
+TSC1
+TSC2
+TSHR
+U2AF1
+UBR5
+USP44
+USP6
+USP8
+USP9X
+VAV1
+VHL
+VTI1A
+WAS
+WDCP
+WIF1
+WNK2
+WRN
+WT1
+WWTR1
+XPA
+XPC
+XPO1
+YWHAE
+ZBTB16
+ZCCHC8
+ZEB1
+ZFHX3
+ZMYM2
+ZMYM3
+ZNF331
+ZNF384
+ZNF429
+ZNF479
+ZNF521
+ZNRF3
+ZRSR2`;
+const CancerGeneCensusLst = text.trim().split("\n");
+export {
+  CancerGeneCensusLst
+};