@sjcrh/proteinpaint-client 2.223.0 → 2.224.1

package/dist/matrix.integration.spec-T5TUAFQN.js

@@ -1,3156 +0,0 @@
-import {
-  getSortOptions
-} from "./chunk-5DI4UNH5.js";
-import "./chunk-C2MCQZWH.js";
-import {
-  getRunPp
-} from "./chunk-DYBH3E6G.js";
-import {
-  detectLst,
-  sleep
-} from "./chunk-WA3C3A2M.js";
-import {
-  termjson
-} from "./chunk-CWWE77DH.js";
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import "./chunk-Q5LG4WR3.js";
-import "./chunk-LVATT455.js";
-import "./chunk-J3LWRVN3.js";
-import "./chunk-UHFO6LHS.js";
-import "./chunk-O6T4SDC7.js";
-import "./chunk-DJK3NKRK.js";
-import "./chunk-MKAF2BHB.js";
-import "./chunk-4FTH4L3A.js";
-import "./chunk-VLIOMJDR.js";
-import "./chunk-2CDIFQPW.js";
-import "./chunk-JP4IU7DO.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-IRAB3OI7.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-4TJO2DGU.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import {
-  CNVClasses,
-  mutationClasses,
-  proteinChangingMutations,
-  synonymousMutations,
-  truncatingMutations
-} from "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// plots/matrix/test/matrix.integration.spec.js
-var import_tape = __toESM(require_tape(), 1);
-(0, import_tape.default)("\n", function(test) {
-  test.comment("-***- plots/matrix -***-");
-  test.end();
-});
-(0, import_tape.default)("only dictionary terms", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(5);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            matrix: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: [
-                {
-                  id: "aaclassic_5",
-                  q: {
-                    mode: "continuous"
-                  }
-                },
-                {
-                  id: "sex"
-                  //q: { mode: 'values' } // or 'groupsetting'
-                },
-                {
-                  id: "agedx",
-                  q: {
-                    mode: "discrete",
-                    type: "regular-bin",
-                    bin_size: 5,
-                    first_bin: {
-                      startunbounded: true,
-                      stop: 5,
-                      stopinclusive: true
-                    }
-                  }
-                  // or 'continuous'
-                },
-                {
-                  id: "Arrhythmias"
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      4,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      240,
-      `should render the expected number of cell rects`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    const sg0rects = matrix.Inner.dom.seriesesG.select(".sjpp-mass-series-g").selectAll("rect");
-    test.equal(
-      sg0rects.filter((d) => d.key <= 0 && d.fill === "transparent").size(),
-      14,
-      `should render special values with transparent rects`
-    );
-    const uniqueHts = /* @__PURE__ */ new Set();
-    sg0rects.each((d) => uniqueHts.add(d.height));
-    test.equal(uniqueHts.size, 45, `should render different rect heights for continuous mode bar plots`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("termCollection", function(test) {
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          termgroups: [
-            {
-              name: "",
-              lst: [getTermCollection()]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: { callbacks: { "postRender.test": runTests } }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      1,
-      `should render the expected number of serieses`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("with divide by terms", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          divideBy: {
-            id: "sex"
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: [
-                { id: "agedx", term: termjson["agedx"] },
-                { id: "diaggrp", term: termjson["diaggrp"] },
-                { id: "aaclassic_5", term: termjson["aaclassic_5"] }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      3,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      180,
-      `should render the expected number of cell rects`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      2,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("long column group labels", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          divideBy: {
-            id: "diaggrp"
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: [
-                { id: "diaggrp", term: termjson["diaggrp"] },
-                { id: "agedx", term: termjson["agedx"] },
-                { id: "aaclassic_5", term: termjson["aaclassic_5"] }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test222": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test222", null);
-    const y = matrix.Inner.dom.clipRect.property("y").baseVal.value;
-    test.true(y > -63 && y < -62, `should adjust the clip-path rect y-value to between -39 and -38, actual=${y}`);
-    const h = matrix.Inner.dom.clipRect.property("height").baseVal.value;
-    test.true(h > 619 && h <= 620, `should adjust the clip-path height to between 595 and 596, actual=${h}`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("divide by continuous terms", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          divideBy: {
-            id: "agedx"
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: [
-                { id: "sex", term: termjson["sex"] },
-                { id: "diaggrp", term: termjson["diaggrp"] },
-                { id: "aaclassic_5", term: termjson["aaclassic_5"] }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      3,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      180,
-      `should render the expected number of cell rects`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      5,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("geneVariant term", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [{ term: { gene: "TP53", name: "TP53", type: "geneVariant", isleaf: true } }]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      1,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      242,
-      `should render the expected number of cell rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("geneVariant terms and dictionary terms", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(3);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [
-                ...getGenes(),
-                { id: "agedx", term: termjson["agedx"] },
-                { id: "diaggrp", term: termjson["diaggrp"] },
-                { id: "aaclassic_5", term: termjson["aaclassic_5"] }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      6,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      902,
-      `should render the expected number of cell rects`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("geneVariant terms with divide by dictionary term", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(3);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          divideBy: {
-            id: "sex"
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      3,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      752,
-      `should render the expected number of cell rects`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      2,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("geneVariant terms and dictionary terms divide by dictionary term", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(3);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          divideBy: {
-            id: "sex"
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [
-                ...getGenes(),
-                { id: "agedx", term: termjson["agedx"] },
-                { id: "diaggrp", term: termjson["diaggrp"] },
-                { id: "aaclassic_5", term: termjson["aaclassic_5"] }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      6,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      962,
-      `should render the expected number of cell rects`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      2,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("sort samples by sample name", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(4);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortSamplesBy: "name"
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const g = matrix.Inner.dom.sampleLabelsPG.selectAll(".sjpp-matrix-series-label-g g");
-    test.equal(g.size(), 60, `should render the expected number of sample names`);
-    test.equal(g._groups[0][0].textContent, "2646", `should be the expected sample name`);
-    test.equal(g._groups[0][9].textContent, "2772", `should be the expected sample name`);
-    test.equal(g._groups[0][59].textContent, "3472", `should be the expected sample name`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("sort samples by Mutation categories, not sorted by CNV", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(4);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortSamplesBy: "a"
-            }
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.sampleLabelsPG.selectAll(".sjpp-matrix-series-label-g g").size(),
-      60,
-      `should render the expected number of sample names`
-    );
-    const rects = matrix.Inner.dom.sampleLabelsPG.selectAll(".sjpp-matrix-series-label-g g")._groups[0];
-    const index_3346 = Array.from(rects).find((rect) => rect.textContent == "3346").__data__.index;
-    test.true(index_3346 < 10, `sample 3346 should be in the expected order (not sorted by CNV)`);
-    const index_2660 = Array.from(rects).find((rect) => rect.textContent == "2660").__data__.index;
-    test.equal(index_2660, 8, `sample 2660 should be in the expected order (not sorted by CNV)`);
-    const index_3472 = Array.from(rects).find((rect) => rect.textContent == "3472").__data__.index;
-    test.true(index_3472 > 9, `sample 3472 should be in the expected order (not sorted by CNV)`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("sort samples by CNV+SSM > SSM-only", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(5);
-  const sortOptions = getSortOptions(
-    void 0,
-    {},
-    {
-      proteinChangingMutations,
-      truncatingMutations,
-      synonymousMutations,
-      mutationClasses,
-      CNVClasses
-    }
-  );
-  const cnvtb = sortOptions.a.sortPriority[0].tiebreakers[2];
-  cnvtb.disabled = false;
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          legendValueFilter: {
-            type: "tvslst",
-            lst: []
-          },
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortSamplesBy: "a",
-              sortOptions
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.sampleLabelsPG.selectAll(".sjpp-matrix-series-label-g g").size(),
-      60,
-      `should render the expected number of sample names`
-    );
-    const rects = matrix.Inner.dom.sampleLabelsPG.selectAll(".sjpp-matrix-series-label-g g")._groups[0];
-    const r = Array.from(rects);
-    const index_3416 = r.find((rect) => rect.textContent == "3416").__data__.index;
-    test.equal(index_3416, 0, `should be in the expected order`);
-    const index_3346 = r.find((rect) => rect.textContent == "3346").__data__.index;
-    test.equal(index_3346, 9, `should be in the expected order`);
-    const index_2660 = r.find((rect) => rect.textContent == "2660").__data__.index;
-    test.equal(index_2660, 11, `should be in the expected order`);
-    const index_3472 = r.find((rect) => rect.textContent == "3472").__data__.index;
-    test.equal(index_3472, r.length - 1, `should be in the expected order`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("set max number of samples", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(1);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            matrix: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              availContentWidth: 1200,
-              maxSample: 10
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [
-                {
-                  id: "sex"
-                  //q: { mode: 'values' } // or 'groupsetting'
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      10,
-      `should render the expected number of cell rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("sort sample groups by Group Name", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortSampleGrpsBy: "name"
-            }
-          },
-          divideBy: {
-            id: "genetic_race"
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const matrixGroupLabels = matrix.Inner.dom.sampleLabelsPG.selectAll(
-      ".sjpp-matrix-series-group-label-g .sjpp-matrix-label"
-    )._groups[0];
-    test.true(matrixGroupLabels[0].textContent.startsWith("African Ancestry"), `should be the expected group name`);
-    test.true(matrixGroupLabels[2].textContent.startsWith("European Ancestry"), `should be the expected group name`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("sort sample groups by Sample Count", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortSampleGrpsBy: "sampleCount"
-            }
-          },
-          divideBy: {
-            id: "genetic_race"
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const matrixGroupLabels = matrix.Inner.dom.sampleLabelsPG.selectAll(
-      ".sjpp-matrix-series-group-label-g .sjpp-matrix-label"
-    )._groups[0];
-    test.true(matrixGroupLabels[0].textContent.startsWith("European Ancestry"), `should be the expected group name`);
-    test.true(matrixGroupLabels[2].textContent.startsWith("Asian Ancestry"), `should be the expected group name`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("sort sample groups by Hits", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortSampleGrpsBy: "hits"
-            }
-          },
-          divideBy: {
-            id: "Hearing loss"
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const matrixGroupLabels = matrix.Inner.dom.sampleLabelsPG.selectAll(
-      ".sjpp-matrix-series-group-label-g .sjpp-matrix-label"
-    )._groups[0];
-    test.true(matrixGroupLabels[0].textContent.startsWith("3: Severe"), `should be the expected group name`);
-    test.true(matrixGroupLabels[4].textContent.startsWith("1: Mild"), `should be the expected group name`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("sort sample groups by Hits 2", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      plots: [
-        {
-          id: "xyz",
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortSampleGrpsBy: "hits"
-            }
-          },
-          divideBy: {
-            id: "agedx"
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        postRender: runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender", null);
-    const matrixGroupLabels = matrix.Inner.dom.sampleLabelsPG.selectAll(
-      ".sjpp-matrix-series-group-label-g .sjpp-matrix-label"
-    )._groups[0];
-    test.true(matrixGroupLabels[0].textContent.startsWith("10 to <15"), `should have the expected left-most group name`);
-    test.true(matrixGroupLabels[4].textContent.startsWith("\u226520"), `should have the right-most expected group name`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("Display Sample Counts for Gene: Absolute", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              samplecount4gene: "abs"
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const termLabels = matrix.Inner.dom.termLabelG.selectAll(".sjpp-matrix-term-label-g .sjpp-matrix-label")._groups[0];
-    const pattern = /\(\d+\)/;
-    test.true(pattern.test(termLabels[0].textContent), `should display sample counts for gene by absolute number`);
-    test.true(
-      pattern.test(termLabels[termLabels.length - 1].textContent),
-      `should display sample counts for gene by absolute number`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("Display Sample Counts for Gene: Percent", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              samplecount4gene: "pct"
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const termLabels = matrix.Inner.dom.termLabelG.selectAll(".sjpp-matrix-term-label-g .sjpp-matrix-label")._groups[0];
-    const pattern = /\(\d+(\.\d+)? ?%\)/;
-    test.true(pattern.test(termLabels[0].textContent), `should display sample counts for gene by percentage`);
-    test.true(
-      pattern.test(termLabels[termLabels.length - 1].textContent),
-      `should display sample counts for gene by percentage`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("Display Sample Counts for Gene: None", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              samplecount4gene: ""
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const termLabels = matrix.Inner.dom.termLabelG.selectAll(".sjpp-matrix-term-label-g .sjpp-matrix-label")._groups[0];
-    const pattern = /\(\d+(\.\d+)?%\)|\(\d+\)/g;
-    test.true(!pattern.test(termLabels[0].textContent), `should not display sample counts for gene`);
-    test.true(!pattern.test(termLabels[termLabels.length - 1].textContent), `should not display sample counts for gene`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("Sort Genes By Sample Count", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortTermsBy: "sampleCount"
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const termLabels = matrix.Inner.dom.termLabelG.selectAll(".sjpp-matrix-term-label-g .sjpp-matrix-label")._groups[0];
-    test.true(termLabels[0].textContent.startsWith("AKT1"), `should sort genes by sample count`);
-    test.true(termLabels[2].textContent.startsWith("KRAS"), `should sort genes by sample count`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("Sort Genes By Input Data Order", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortTermsBy: "asListed"
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const termLabels = matrix.Inner.dom.termLabelG.selectAll(".sjpp-matrix-term-label-g .sjpp-matrix-label")._groups[0];
-    test.true(termLabels[0].textContent.startsWith("TP53"), `should sort genes by input data order`);
-    test.true(termLabels[2].textContent.startsWith("AKT1"), `should sort genes by input data order`);
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("avoid race condition - plot edit", function(test) {
-  test.timeoutAfter(1500);
-  test.plan(4);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortTermsBy: "asListed"
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    matrix.Inner.app.vocabApi.origGetAnnotatedSampleData = matrix.Inner.app.vocabApi.getAnnotatedSampleData;
-    matrix.Inner.app.vocabApi.getAnnotatedSampleData = async (opts, _refs = {}) => {
-      const j = i;
-      i = 0;
-      const data = await matrix.Inner.app.vocabApi.origGetAnnotatedSampleData(opts, _refs);
-      await sleep(j);
-      return data;
-    };
-    matrix.on("postRender.test", async () => {
-      matrix.on("postRender.test", null);
-      await sleep(responseDelay + 300);
-      const termLabels = matrix.Inner.dom.termLabelG.selectAll(".sjpp-matrix-term-label-g .sjpp-matrix-label");
-      test.equal(termLabels.size(), 1, `should have 1 gene row`);
-      test.true(termLabels._groups?.[0][0].textContent.startsWith("BCR"), `should sort genes by input data order`);
-      const rects = matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect");
-      const hits = rects.filter((d) => d.key === "BCR" && d.value.class != "WT" && d.value.class != "Blank");
-      test.equal(
-        rects.size(),
-        240,
-        "should have the expected total number of matrix cell rects, inlcuding WT and not tested"
-      );
-      test.equal(hits.size(), 2, "should have the expected number of matrix cell rects with hits");
-      if (test._ok) matrix.Inner.app.destroy();
-      test.end();
-    });
-    const responseDelay = 10;
-    let i = responseDelay;
-    try {
-      const results = await Promise.all([
-        matrix.Inner.app.dispatch({
-          type: "plot_edit",
-          id: matrix.id,
-          config: {
-            termgroups: [
-              {
-                name: "",
-                lst: [
-                  // $id is added manually since fillTermWrapper() is not called here and
-                  // cannot be assumed to be called within store.plot_edit()
-                  {
-                    $id: 0,
-                    term: {
-                      gene: "KRAS",
-                      name: "KRAS",
-                      type: "geneVariant",
-                      isleaf: true,
-                      groupsetting: { disabled: false }
-                    },
-                    q: { type: "values" }
-                  },
-                  {
-                    $id: 1,
-                    term: {
-                      gene: "AKT1",
-                      name: "AKT1",
-                      type: "geneVariant",
-                      isleaf: true,
-                      groupsetting: { disabled: false }
-                    },
-                    q: { type: "values" }
-                  }
-                ]
-              }
-            ]
-          }
-        }),
-        (async () => {
-          await sleep(1);
-          matrix.Inner.app.dispatch({
-            type: "plot_edit",
-            id: matrix.id,
-            config: {
-              termgroups: [
-                {
-                  name: "",
-                  // $id is added manually since fillTermWrapper() is not called here and
-                  // cannot be assumed to be called within store.plot_edit()
-                  lst: [
-                    {
-                      $id: 3,
-                      term: {
-                        name: "BCR",
-                        genes: [
-                          {
-                            kind: "gene",
-                            id: "BCR",
-                            gene: "BCR",
-                            name: "BCR",
-                            type: "geneVariant"
-                          }
-                        ],
-                        type: "geneVariant",
-                        isleaf: true,
-                        groupsetting: { disabled: false }
-                      },
-                      q: { type: "values" }
-                    }
-                  ]
-                }
-              ]
-            }
-          });
-        })()
-      ]);
-    } catch (e) {
-      test.fail("error: " + e);
-      throw e;
-    }
-  }
-});
-(0, import_tape.default)("avoid race condition - cohort change", function(test) {
-  test.timeoutAfter(3e3);
-  test.plan(4);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200,
-              sortTermsBy: "asListed"
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: getGenes()
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    matrix.Inner.app.vocabApi.origGetAnnotatedSampleData = matrix.Inner.app.vocabApi.getAnnotatedSampleData;
-    matrix.Inner.app.vocabApi.getAnnotatedSampleData = async (opts, _refs = {}) => {
-      const vkeys = opts.filter.lst?.[0].tvs.values.map((v) => v.key);
-      const j = responseDelays[i];
-      i++;
-      await sleep(j);
-      const data = await matrix.Inner.app.vocabApi.origGetAnnotatedSampleData(opts, _refs);
-      return data;
-    };
-    matrix.on("postRender.test", async () => {
-      matrix.on("postRender.test", null);
-      await sleep(responseDelays.reduce((sum, v) => sum + v, 0) + 300);
-      const termLabels = matrix.Inner.dom.termLabelG.selectAll(".sjpp-matrix-term-label-g .sjpp-matrix-label");
-      test.equal(termLabels.size(), 3, `should have 3 gene rows`);
-      const rects = matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect");
-      test.equal(
-        rects.size(),
-        1202,
-        "should have the expected total number of matrix cell rects, inlcuding WT and not tested"
-      );
-      const hits = rects.filter((d) => d.key === "BCR" && d.value.class != "WT" && d.value.class != "Blank");
-      test.equal(hits.size(), 0, "should have the expected number of matrix cell rects with hits");
-      test.deepEqual(
-        matrix.Inner.app.getState().termfilter.filter.lst?.[0].tvs,
-        matrix.Inner.state.filter.lst?.[0].tvs,
-        `app.state and matrix.state should have the same cohort filter value`
-      );
-      if (test._ok) matrix.Inner.app.destroy();
-      test.end();
-    });
-    const responseDelays = [800, 500, 10];
-    let i = 0;
-    try {
-      const results = await Promise.all([
-        (async () => {
-          await sleep(100);
-          matrix.Inner.app.dispatch({
-            type: "cohort_set",
-            activeCohort: 1
-          });
-        })(),
-        (async () => {
-          await sleep(200);
-          matrix.Inner.app.dispatch({
-            type: "cohort_set",
-            activeCohort: 0
-          });
-        })(),
-        (async () => {
-          await sleep(300);
-          matrix.Inner.app.dispatch({
-            type: "cohort_set",
-            activeCohort: 2
-          });
-        })()
-      ]);
-    } catch (e) {
-      test.fail("error: " + e);
-      throw e;
-    }
-  }
-});
-(0, import_tape.default)('apply "hide" legend filters to a dictionary term', function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(10);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            matrix: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: [
-                {
-                  id: "aaclassic_5",
-                  q: {
-                    mode: "continuous"
-                  }
-                },
-                {
-                  id: "genetic_race"
-                  //q: { mode: 'values' } // or 'groupsetting'
-                },
-                {
-                  id: "agedx",
-                  q: {
-                    mode: "discrete",
-                    type: "regular-bin",
-                    bin_size: 5,
-                    first_bin: {
-                      startunbounded: true,
-                      stop: 5,
-                      stopinclusive: true
-                    }
-                  }
-                  // or 'continuous'
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const legendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("Asian")
-    );
-    legendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(options[0].innerText, "Hide", `First option should be Hide`);
-    test.equal(options[1].innerText, "Show only", `second option should be Show only`);
-    test.equal(options[2].innerText, "Show all", `third option should be Show all`);
-    const rects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 177,
-      trigger: () => {
-        options[0].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      3,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    const legendTexts2 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("Asian")
-    );
-    legendTexts2.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options2 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(options2[0].innerText, "Show", `First option should be Show`);
-    test.equal(options2[1].innerText, "Show only", `second option should be Show only`);
-    test.equal(options2[2].innerText, "Show all", `third option should be Show all`);
-    const rects2 = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 180,
-      trigger: () => {
-        options2[0].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      3,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)('apply "show only" and "show all" legend filters to dictionary terms', function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(14);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            matrix: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: [
-                {
-                  id: "aaclassic_5",
-                  q: {
-                    mode: "continuous"
-                  }
-                },
-                {
-                  id: "sex"
-                  //q: { mode: 'values' } // or 'groupsetting'
-                },
-                {
-                  id: "agedx",
-                  q: {
-                    mode: "discrete",
-                    type: "regular-bin",
-                    bin_size: 5,
-                    first_bin: {
-                      startunbounded: true,
-                      stop: 5,
-                      stopinclusive: true
-                    }
-                  }
-                  // or 'continuous'
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const legendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("Male")
-    );
-    legendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    const rects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 75,
-      trigger: () => {
-        options[1].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      3,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    const secondLegendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("<5")
-    );
-    secondLegendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const secondOptions = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(secondOptions[0].innerText, "Hide", `First option should be Hide`);
-    test.equal(secondOptions[1].innerText, "Show only", `second option should be Show only`);
-    test.equal(secondOptions[2].innerText, "Show all", `third option should be Show all`);
-    const secondRects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 30,
-      trigger: () => {
-        secondOptions[1].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      3,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    const thirdLegendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("<5")
-    );
-    thirdLegendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const thirdOptions = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(thirdOptions[0].innerText, "Hide", `First option should be Hide`);
-    test.equal(thirdOptions[2].innerText, "Show all", `third option should be Show all`);
-    const thirdRects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 0,
-      trigger: () => {
-        thirdOptions[0].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      0,
-      `should render the expected number of serieses`
-    );
-    const fourthLegendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("<5")
-    );
-    fourthLegendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const fourthOptions = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(fourthOptions[0].innerText, "Show", `first option should be Show`);
-    test.equal(fourthOptions[2].innerText, "Show all", `third option should be Show all`);
-    const fourthRects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 75,
-      trigger: () => {
-        fourthOptions[2].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      3,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)(
-  'apply "Hide samples with" and "Do not show" legend filters to a geneVariant term in geneVariant term only matrix',
-  function(test) {
-    test.timeoutAfter(5e3);
-    test.plan(12);
-    runpp({
-      state: {
-        plots: [
-          {
-            chartType: "matrix",
-            settings: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              matrix: {
-                availContentWidth: 1200
-              }
-            },
-            termgroups: [
-              {
-                name: "",
-                lst: [getGenes()[0]]
-              }
-            ]
-          }
-        ]
-      },
-      matrix: {
-        callbacks: {
-          "postRender.test": runTests
-        }
-      }
-    });
-    async function runTests(matrix) {
-      matrix.on("postRender.test", null);
-      const legendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-        (d) => d?.__data__?.$id?.startsWith("Germline Mutations") && d.__data__.text?.startsWith("FRAMESHIFT")
-      );
-      legendTexts.dispatchEvent(
-        new MouseEvent("mouseup", {
-          bubbles: true,
-          cancelable: true
-        })
-      );
-      const options = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-      test.equal(
-        options[0].innerText,
-        "Hide samples with FRAMESHIFT",
-        `First option should be "Hide samples with FRAMESHIFT"`
-      );
-      test.equal(options[1].innerText, "Do not show FRAMESHIFT", `second option should be "Do not show FRAMESHIFT"`);
-      test.equal(options.length, 2, `Should only show two options`);
-      const rects = await detectLst({
-        elem: matrix.Inner.dom.seriesesG.node(),
-        selector: ".sjpp-mass-series-g rect",
-        count: 237,
-        trigger: () => {
-          options[0].dispatchEvent(
-            new MouseEvent("click", {
-              bubbles: true,
-              cancelable: true
-            })
-          );
-        }
-      });
-      test.equal(
-        matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-        1,
-        `should render the expected number of serieses`
-      );
-      test.equal(
-        matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-        1,
-        `should render the expected number of cluster rects`
-      );
-      const legendTexts2 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-        (d) => d?.__data__?.$id?.startsWith("Germline Mutations") && d.__data__.text?.startsWith("FRAMESHIFT")
-      );
-      legendTexts2.dispatchEvent(
-        new MouseEvent("mouseup", {
-          bubbles: true,
-          cancelable: true
-        })
-      );
-      const options2 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-      test.equal(
-        options2[0].innerText,
-        "Show samples with FRAMESHIFT",
-        `First option should be "Show samples with FRAMESHIFT"`
-      );
-      test.equal(options2.length, 1, `Should only show one option`);
-      const rects2 = await detectLst({
-        elem: matrix.Inner.dom.seriesesG.node(),
-        selector: ".sjpp-mass-series-g rect",
-        count: 242,
-        trigger: () => {
-          options2[0].dispatchEvent(
-            new MouseEvent("click", {
-              bubbles: true,
-              cancelable: true
-            })
-          );
-        }
-      });
-      test.equal(
-        matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-        1,
-        `should render the expected number of serieses`
-      );
-      test.equal(
-        matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-        1,
-        `should render the expected number of cluster rects`
-      );
-      const legendTexts3 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-        (d) => d?.__data__?.$id?.startsWith("Germline Mutations") && d.__data__.text?.startsWith("FRAMESHIFT")
-      );
-      legendTexts3.dispatchEvent(
-        new MouseEvent("mouseup", {
-          bubbles: true,
-          cancelable: true
-        })
-      );
-      const options3 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-      test.equal(options3.length, 2, `Should only show two options`);
-      const rects3 = await detectLst({
-        elem: matrix.Inner.dom.seriesesG.node(),
-        selector: ".sjpp-mass-series-g rect",
-        count: 241,
-        trigger: () => {
-          options3[1].dispatchEvent(
-            new MouseEvent("click", {
-              bubbles: true,
-              cancelable: true
-            })
-          );
-        }
-      });
-      const legendTexts4 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-        (d) => d?.__data__?.$id?.startsWith("Germline Mutations") && d.__data__.text?.startsWith("FRAMESHIFT")
-      );
-      legendTexts4.dispatchEvent(
-        new MouseEvent("mouseup", {
-          bubbles: true,
-          cancelable: true
-        })
-      );
-      const options4 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-      test.equal(
-        options4[0].innerText,
-        "Show samples with FRAMESHIFT",
-        `First option should be "Show samples with FRAMESHIFT"`
-      );
-      test.equal(options4.length, 1, `Should only show one option`);
-      const rects4 = await detectLst({
-        elem: matrix.Inner.dom.seriesesG.node(),
-        selector: ".sjpp-mass-series-g rect",
-        count: 242,
-        trigger: () => {
-          options4[0].dispatchEvent(
-            new MouseEvent("click", {
-              bubbles: true,
-              cancelable: true
-            })
-          );
-        }
-      });
-      if (test._ok) matrix.Inner.app.destroy();
-      test.end();
-    }
-  }
-);
-(0, import_tape.default)("apply legend group filters to a geneVariant term in geneVariant term only matrix", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(15);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [{ term: { gene: "TP53", name: "TP53", type: "geneVariant", isleaf: true } }]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const legendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.name == "Somatic Mutations" && !d.__data__.isLegendItem
-    );
-    legendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(
-      options[0].innerText,
-      "Show only truncating mutations",
-      `First option should be "Show only truncating mutations"`
-    );
-    test.equal(
-      options[1].innerText,
-      "Show only protein-changing mutations",
-      `second option should be "Show only protein-changing mutations"`
-    );
-    test.equal(
-      options[2].innerText,
-      "Do not show Somatic Mutations",
-      `third option should be "Do not show Somatic Mutations"`
-    );
-    test.equal(options.length, 3, `Should show three options`);
-    const rects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 183,
-      trigger: () => {
-        options[0].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      1,
-      `should render the expected number of serieses`
-    );
-    const legendTexts2 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.name == "Somatic Mutations" && !d.__data__.isLegendItem
-    );
-    legendTexts2.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options2 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(
-      options2[2].innerText,
-      "Do not show Somatic Mutations",
-      `third option should be "Do not show Somatic Mutations"`
-    );
-    test.equal(
-      options2[3].innerText,
-      "Show all Somatic Mutations",
-      `fourth option should be "Show all Somatic Mutations"`
-    );
-    test.equal(options2.length, 4, `Should show four options`);
-    const rects2 = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 185,
-      trigger: () => {
-        options2[1].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      1,
-      `should render the expected number of serieses`
-    );
-    const legendTexts3 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.name == "Somatic Mutations" && !d.__data__.isLegendItem
-    );
-    legendTexts3.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options3 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(
-      options3[2].innerText,
-      "Do not show Somatic Mutations",
-      `third option should be "Do not show Somatic Mutations"`
-    );
-    test.equal(options3.length, 4, `Should show four options`);
-    const rects3 = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 182,
-      trigger: () => {
-        options3[2].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      1,
-      `should render the expected number of serieses`
-    );
-    const legendTexts4 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.name == "Somatic Mutations" && !d.__data__.isLegendItem
-    );
-    legendTexts4.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options4 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(
-      options4[0].innerText,
-      "Show all Somatic Mutations",
-      `first option should be "Show all Somatic Mutations"`
-    );
-    test.equal(options4.length, 1, `Should show one option`);
-    const rects4 = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 242,
-      trigger: () => {
-        options4[0].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      1,
-      `should render the expected number of serieses`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)(
-  "apply legend group filters and legend filters to a matrix with both geneVariant and dictionary terms",
-  function(test) {
-    test.timeoutAfter(5e3);
-    test.plan(13);
-    runpp({
-      state: {
-        plots: [
-          {
-            chartType: "matrix",
-            settings: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              matrix: {
-                availContentWidth: 1200
-              }
-            },
-            termgroups: [
-              {
-                name: "",
-                lst: [
-                  ...getGenes(),
-                  { id: "agedx", term: termjson["agedx"] },
-                  { id: "diaggrp", term: termjson["diaggrp"] },
-                  { id: "aaclassic_5", term: termjson["aaclassic_5"] }
-                ]
-              }
-            ]
-          }
-        ]
-      },
-      matrix: {
-        callbacks: {
-          "postRender.test": runTests
-        }
-      }
-    });
-    async function runTests(matrix) {
-      matrix.on("postRender.test", null);
-      const legendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-        (d) => d?.__data__?.name == "Somatic Mutations" && !d.__data__.isLegendItem
-      );
-      legendTexts.dispatchEvent(
-        new MouseEvent("mouseup", {
-          bubbles: true,
-          cancelable: true
-        })
-      );
-      const options = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-      test.equal(
-        options[0].innerText,
-        "Show only truncating mutations",
-        `First option should be "Show only truncating mutations"`
-      );
-      test.equal(options.length, 3, `Should show three options`);
-      const rects = await detectLst({
-        elem: matrix.Inner.dom.seriesesG.node(),
-        selector: ".sjpp-mass-series-g rect",
-        count: 723,
-        trigger: () => {
-          options[0].dispatchEvent(
-            new MouseEvent("click", {
-              bubbles: true,
-              cancelable: true
-            })
-          );
-        }
-      });
-      test.equal(
-        matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-        6,
-        `should render the expected number of serieses`
-      );
-      const legendTexts2 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-        (d) => d?.__data__?.name == "Somatic Mutations" && !d.__data__.isLegendItem
-      );
-      legendTexts2.dispatchEvent(
-        new MouseEvent("mouseup", {
-          bubbles: true,
-          cancelable: true
-        })
-      );
-      const options2 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-      test.equal(
-        options2[1].innerText,
-        "Show only protein-changing mutations",
-        `second option should be "Show only protein-changing mutations"`
-      );
-      test.equal(
-        options2[3].innerText,
-        "Show all Somatic Mutations",
-        `fourth option should be "Show all Somatic Mutations"`
-      );
-      test.equal(options2.length, 4, `Should show four options`);
-      const rects2 = await detectLst({
-        elem: matrix.Inner.dom.seriesesG.node(),
-        selector: ".sjpp-mass-series-g rect",
-        count: 726,
-        trigger: () => {
-          options2[1].dispatchEvent(
-            new MouseEvent("click", {
-              bubbles: true,
-              cancelable: true
-            })
-          );
-        }
-      });
-      const legendTexts3 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-        (d) => d?.__data__?.$id?.startsWith("Somatic Mutations") && d.__data__.text?.startsWith("FRAMESHIFT")
-      );
-      legendTexts3.dispatchEvent(
-        new MouseEvent("mouseup", {
-          bubbles: true,
-          cancelable: true
-        })
-      );
-      const options3 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-      test.equal(
-        options3[0].innerText,
-        "Hide samples with FRAMESHIFT",
-        `First option should be "Hide samples with FRAMESHIFT"`
-      );
-      test.equal(options3[1].innerText, "Do not show FRAMESHIFT", `second option should be "Do not show FRAMESHIFT"`);
-      const rects3 = await detectLst({
-        elem: matrix.Inner.dom.seriesesG.node(),
-        selector: ".sjpp-mass-series-g rect",
-        count: 712,
-        trigger: () => {
-          options3[0].dispatchEvent(
-            new MouseEvent("click", {
-              bubbles: true,
-              cancelable: true
-            })
-          );
-        }
-      });
-      test.equal(
-        matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-        6,
-        `should render the expected number of serieses`
-      );
-      const legendTexts4 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-        (d) => d?.__data__?.$id?.startsWith("Somatic Mutations") && d.__data__.text?.startsWith("FRAMESHIFT")
-      );
-      legendTexts4.dispatchEvent(
-        new MouseEvent("mouseup", {
-          bubbles: true,
-          cancelable: true
-        })
-      );
-      const options4 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-      test.equal(
-        options4[0].innerText,
-        "Show samples with FRAMESHIFT",
-        `First option should be "Show samples with FRAMESHIFT"`
-      );
-      test.equal(options4.length, 1, `Should only show one option`);
-      const rects4 = await detectLst({
-        elem: matrix.Inner.dom.seriesesG.node(),
-        selector: ".sjpp-mass-series-g rect",
-        count: 726,
-        trigger: () => {
-          options4[0].dispatchEvent(
-            new MouseEvent("click", {
-              bubbles: true,
-              cancelable: true
-            })
-          );
-        }
-      });
-      const legendTexts5 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-        (d) => d?.__data__?.name == "Somatic Mutations" && !d.__data__.isLegendItem
-      );
-      legendTexts5.dispatchEvent(
-        new MouseEvent("mouseup", {
-          bubbles: true,
-          cancelable: true
-        })
-      );
-      const options5 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-      test.equal(
-        options5[3].innerText,
-        "Show all Somatic Mutations",
-        `fourth option should be "Show all Somatic Mutations"`
-      );
-      test.equal(options5.length, 4, `Should show four options`);
-      const rects5 = await detectLst({
-        elem: matrix.Inner.dom.seriesesG.node(),
-        selector: ".sjpp-mass-series-g rect",
-        count: 902,
-        trigger: () => {
-          options5[3].dispatchEvent(
-            new MouseEvent("click", {
-              bubbles: true,
-              cancelable: true
-            })
-          );
-        }
-      });
-      if (test._ok) matrix.Inner.app.destroy();
-      test.end();
-    }
-  }
-);
-(0, import_tape.default)("cell brush zoom in", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(1);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            matrix: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              availContentWidth: 300
-            }
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: [
-                {
-                  id: "aaclassic_5",
-                  q: {
-                    mode: "continuous"
-                  }
-                },
-                {
-                  id: "sex"
-                  //q: { mode: 'values' } // or 'groupsetting'
-                },
-                {
-                  id: "agedx",
-                  q: {
-                    mode: "discrete",
-                    type: "regular-bin",
-                    bin_size: 5,
-                    first_bin: {
-                      startunbounded: true,
-                      stop: 5,
-                      stopinclusive: true
-                    }
-                  }
-                  // or 'continuous'
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const startCell = matrix.Inner.serieses[1].cells[10];
-    const endCell = matrix.Inner.serieses[1].cells[14];
-    matrix.Inner.clickedSeriesCell = {
-      startCell,
-      endCell
-    };
-    matrix.Inner.zoomWidth = Math.abs(startCell.totalIndex - endCell.totalIndex) * matrix.Inner.dimensions.colw;
-    matrix.on("postRender.test", () => {
-      matrix.on("postRender.test", null);
-      test.deepEqual(matrix.Inner.settings.matrix.zoomLevel, 3.2, "should have the expected zoom level after zoom in");
-      if (test._ok) matrix.Inner.app.destroy();
-      test.end();
-    });
-    matrix.Inner.triggerZoomArea();
-  }
-});
-(0, import_tape.default)("survival term in continous mode", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [
-                {
-                  term: {
-                    name: "Overall survival",
-                    type: "survival",
-                    isleaf: true,
-                    unit: "years",
-                    id: "os"
-                  },
-                  q: {
-                    mode: "continuous"
-                  }
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      1,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      60,
-      `should render the expected number of cell rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("survival term in discrete mode", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [
-                {
-                  term: {
-                    name: "Overall survival",
-                    type: "survival",
-                    isleaf: true,
-                    unit: "years",
-                    id: "os"
-                  },
-                  q: {
-                    mode: "continuous"
-                  }
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      1,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      60,
-      `should render the expected number of cell rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("survival term with divide by dictionary term", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          divideBy: {
-            id: "sex"
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [
-                {
-                  term: {
-                    name: "Overall survival",
-                    type: "survival",
-                    isleaf: true,
-                    unit: "years",
-                    id: "os"
-                  },
-                  q: {
-                    mode: "continuous"
-                  }
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      1,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      60,
-      `should render the expected number of cell rects`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      2,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("dictionary term with divide by survival term", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            // the matrix autocomputes the colw based on available screen width,
-            // need to set an exact screen width for consistent tests using getBBox()
-            matrix: {
-              availContentWidth: 1200
-            }
-          },
-          divideBy: {
-            id: "os"
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: [
-                { id: "agedx", term: termjson["agedx"] },
-                { id: "diaggrp", term: termjson["diaggrp"] },
-                { id: "aaclassic_5", term: termjson["aaclassic_5"] }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      3,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g rect").size(),
-      180,
-      `should render the expected number of cell rects`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      2,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)('apply "hide" and "show" legend filters to a survival term', function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(10);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            matrix: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [
-                {
-                  id: "aaclassic_5",
-                  q: {
-                    mode: "continuous"
-                  }
-                },
-                {
-                  id: "genetic_race"
-                  //q: { mode: 'values' } // or 'groupsetting'
-                },
-                {
-                  id: "agedx",
-                  q: {
-                    mode: "discrete",
-                    type: "regular-bin",
-                    bin_size: 5,
-                    first_bin: {
-                      startunbounded: true,
-                      stop: 5,
-                      stopinclusive: true
-                    }
-                  }
-                },
-                {
-                  term: {
-                    name: "Overall survival",
-                    type: "survival",
-                    isleaf: true,
-                    unit: "years",
-                    id: "os"
-                  }
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const legendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("Alive")
-    );
-    legendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(options[0].innerText, "Hide", `First option should be Hide`);
-    test.equal(options[1].innerText, "Show only", `second option should be Show only`);
-    test.equal(options[2].innerText, "Show all", `third option should be Show all`);
-    const rects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 228,
-      trigger: () => {
-        options[0].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      4,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    const legendTexts2 = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("Alive")
-    );
-    legendTexts2.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options2 = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(options2[0].innerText, "Show", `First option should be Show`);
-    test.equal(options2[1].innerText, "Show only", `second option should be Show only`);
-    test.equal(options2[2].innerText, "Show all", `third option should be Show all`);
-    const rects2 = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 240,
-      trigger: () => {
-        options2[0].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      4,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)('apply "show only" and "show all" legend filters to a survival terms', function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(14);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            matrix: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              availContentWidth: 1200
-            }
-          },
-          termgroups: [
-            {
-              name: "",
-              lst: [
-                {
-                  id: "aaclassic_5",
-                  q: {
-                    mode: "continuous"
-                  }
-                },
-                {
-                  id: "genetic_race"
-                  //q: { mode: 'values' } // or 'groupsetting'
-                },
-                {
-                  id: "agedx",
-                  q: {
-                    mode: "discrete",
-                    type: "regular-bin",
-                    bin_size: 5,
-                    first_bin: {
-                      startunbounded: true,
-                      stop: 5,
-                      stopinclusive: true
-                    }
-                  }
-                },
-                {
-                  term: {
-                    name: "Overall survival",
-                    type: "survival",
-                    isleaf: true,
-                    unit: "years",
-                    id: "os"
-                  }
-                }
-              ]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    const legendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("Alive")
-    );
-    legendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const options = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    const rects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 12,
-      trigger: () => {
-        options[1].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      4,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    const secondLegendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("<5")
-    );
-    secondLegendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const secondOptions = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(secondOptions[0].innerText, "Hide", `First option should be Hide`);
-    test.equal(secondOptions[1].innerText, "Show only", `second option should be Show only`);
-    test.equal(secondOptions[2].innerText, "Show all", `third option should be Show all`);
-    const secondRects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 4,
-      trigger: () => {
-        secondOptions[1].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      4,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    const thirdLegendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("<5")
-    );
-    thirdLegendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const thirdOptions = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(thirdOptions[0].innerText, "Hide", `First option should be Hide`);
-    test.equal(thirdOptions[2].innerText, "Show all", `third option should be Show all`);
-    const thirdRects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 12,
-      trigger: () => {
-        thirdOptions[2].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      4,
-      `should render the expected number of serieses`
-    );
-    const fourthLegendTexts = [...matrix.Inner.dom.legendG.node().querySelectorAll("g g text")].find(
-      (d) => d?.__data__?.text?.startsWith("Alive")
-    );
-    fourthLegendTexts.dispatchEvent(
-      new MouseEvent("mouseup", {
-        bubbles: true,
-        cancelable: true
-      })
-    );
-    const fourthOptions = matrix.Inner.dom.legendMenu.d.node().querySelectorAll("div.sja_menuoption.sja_sharp_border");
-    test.equal(fourthOptions[0].innerText, "Hide", `first option should be Hide`);
-    test.equal(fourthOptions[2].innerText, "Show all", `third option should be Show all`);
-    const fourthRects = await detectLst({
-      elem: matrix.Inner.dom.seriesesG.node(),
-      selector: ".sjpp-mass-series-g rect",
-      count: 240,
-      trigger: () => {
-        fourthOptions[2].dispatchEvent(
-          new MouseEvent("click", {
-            bubbles: true,
-            cancelable: true
-          })
-        );
-      }
-    });
-    test.equal(
-      matrix.Inner.dom.seriesesG.selectAll(".sjpp-mass-series-g").size(),
-      4,
-      `should render the expected number of serieses`
-    );
-    test.equal(
-      matrix.Inner.dom.cluster.selectAll(".sjpp-matrix-clusteroutlines rect").size(),
-      1,
-      `should render the expected number of cluster rects`
-    );
-    if (test._ok) matrix.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("sample ancestry labels and line spans", function(test) {
-  test.timeoutAfter(8e3);
-  const ancestrySampleIds = [1, 2, 3, 4, 5, 6, 7, 8, 9];
-  const filter = {
-    type: "tvslst",
-    in: true,
-    join: "",
-    lst: [
-      {
-        type: "tvs",
-        noEdit: true,
-        tvs: {
-          term: {
-            name: "ancestry test samples",
-            type: "samplelst",
-            values: { grp: { key: "grp", list: ancestrySampleIds.map((id) => ({ sampleId: id })) } }
-          }
-        }
-      }
-    ]
-  };
-  runpp({
-    state: {
-      // samples 1-9 belong to the XYZ cohort (index 1); the store ANDs the active
-      // cohort filter with the samplelst filter below to yield exactly samples 1-9
-      activeCohort: 1,
-      termfilter: { filter },
-      plots: [
-        {
-          chartType: "matrix",
-          settings: {
-            matrix: {
-              availContentWidth: 1200,
-              sortBySampleAncestry: "last"
-            }
-          },
-          termgroups: [
-            {
-              name: "Demographics",
-              lst: [{ id: "diaggrp" }]
-            }
-          ]
-        }
-      ]
-    },
-    matrix: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(matrix) {
-    matrix.on("postRender.test", null);
-    test.equal(matrix.Inner.sampleOrder.length, 9, "should render the 9 filtered samples");
-    const spanNodes = matrix.Inner.dom.svg.selectAll(".sjpp-matrix-label-span").nodes();
-    test.equal(spanNodes.length, 3, "should render 3 ancestor spans (1_patient, 2_patient, and the nested 3_patient)");
-    const lineX2ByLabel = {};
-    for (const node of spanNodes) {
-      const label = node.querySelector("text")?.textContent;
-      lineX2ByLabel[label] = +node.querySelector("line")?.getAttribute("x2");
-    }
-    test.deepEqual(
-      Object.keys(lineX2ByLabel).sort(),
-      ["1_patient", "2_patient", "3_patient"],
-      "ancestor spans should be labeled by ancestor name (1_patient, 2_patient, 3_patient)"
-    );
-    test.equal(
-      matrix.Inner.dom.svg.selectAll(".sjpp-matrix-label-span line").size(),
-      3,
-      "should render 3 ancestor line spans"
-    );
-    test.ok(
-      lineX2ByLabel["3_patient"] > lineX2ByLabel["1_patient"] && lineX2ByLabel["3_patient"] > lineX2ByLabel["2_patient"],
-      "the nested grandparent span (3_patient) should be wider than the parent spans (1_patient, 2_patient)"
-    );
-    matrix.on("postRender.disableTest", () => {
-      matrix.on("postRender.disableTest", null);
-      test.equal(
-        matrix.Inner.dom.svg.selectAll(".sjpp-matrix-label-span").size(),
-        0,
-        "ancestor spans should be removed after sortBySampleAncestry is disabled"
-      );
-      if (test._ok) matrix.Inner.app.destroy();
-      test.end();
-    });
-    matrix.Inner.app.dispatch({
-      type: "plot_edit",
-      id: matrix.Inner.id,
-      config: { settings: { matrix: { sortBySampleAncestry: false } } }
-    });
-  }
-});
-var runpp = getRunPp("mass", {
-  state: {
-    dslabel: "TermdbTest",
-    genome: "hg38-test",
-    nav: { activeTab: -1 }
-  },
-  debug: 1
-});
-function getGenes() {
-  return [
-    { term: { gene: "TP53", name: "TP53", type: "geneVariant", isleaf: true } },
-    { term: { gene: "KRAS", name: "KRAS", type: "geneVariant", isleaf: true } },
-    { term: { gene: "AKT1", name: "AKT1", type: "geneVariant", isleaf: true } }
-  ];
-}
-function getTermCollection() {
-  return {
-    //isAtomic: true,
-    type: "TermCollectionTWCont",
-    //$id: 'TwBase_0__48243_99155',
-    term: {
-      type: "termCollection",
-      termlst: [
-        {
-          type: "float",
-          bins: {
-            default: {
-              type: "regular-bin",
-              bin_size: 5,
-              startinclusive: true,
-              first_bin: { startunbounded: true, stop: 5 }
-            },
-            label_offset: 1
-          },
-          name: "Age (years) at Cancer Diagnosis",
-          id: "agedx",
-          isleaf: true,
-          values: {},
-          hashtmldetail: true
-        },
-        {
-          type: "float",
-          bins: {
-            default: {
-              type: "regular-bin",
-              startinclusive: true,
-              bin_size: 5,
-              first_bin: { stop: 25 },
-              last_bin: { start: 55 }
-            }
-          },
-          name: "Age (years) at Death",
-          id: "a_death",
-          isleaf: true,
-          values: {},
-          hashtmldetail: true
-        },
-        {
-          type: "float",
-          bins: { default: { type: "regular-bin", startinclusive: true, bin_size: 10, first_bin: { stop: 15 } } },
-          name: "Age (years) at Last NDI Search",
-          id: "a_ndi",
-          isleaf: true,
-          values: {}
-        },
-        {
-          type: "float",
-          bins: { default: { type: "regular-bin", startinclusive: true, bin_size: 10, first_bin: { stop: 15 } } },
-          values: { "-994": { label: "N/A: No campus visit", uncomputable: true } },
-          name: "Age at last ABC assessment",
-          id: "agelastvisit",
-          isleaf: true
-        }
-      ],
-      name: "Fake Collection 1",
-      isleaf: true,
-      propsByTermId: {
-        agedx: { color: "#1b9e77" },
-        a_death: { color: "#d95f02" },
-        a_ndi: { color: "#7570b3" },
-        agelastvisit: { color: "#e7298a" }
-      }
-    },
-    q: { isAtomic: true, mode: "continuous", lst: [] }
-  };
-}
-//# sourceMappingURL=matrix.integration.spec-T5TUAFQN.js.map