@sjcrh/proteinpaint-client 2.223.0 → 2.224.1

package/dist/grin2-BU5DLVNV.js

@@ -1,66 +0,0 @@
-import {
-  appInit
-} from "./chunk-UKKLAUYO.js";
-import "./chunk-VD4WX5ZG.js";
-import "./chunk-4E2F26CC.js";
-import "./chunk-FE5TCBIT.js";
-import {
-  vocabInit
-} from "./chunk-JP4IU7DO.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-IRAB3OI7.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-4TJO2DGU.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import {
-  copyMerge
-} from "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// gdc/grin2.ts
-async function gdcGRIN2ui(arg, _holder, genomes) {
-  const toolGenome = arg.genome || "hg38";
-  const toolDslabel = arg.dslabel || "GDC";
-  const genome = genomes[toolGenome];
-  if (!genome) throw toolGenome + " missing";
-  if (arg.filter0 && typeof arg.filter0 != "object") throw "arg.filter0 not object";
-  const vocabApi = await vocabInit({
-    state: { vocab: { genome: toolGenome, dslabel: toolDslabel } }
-  });
-  vocabApi.getTermdbConfig();
-  const plotAppApi = await appInit({
-    holder: select_default(arg.holder).select(".sja_root_holder"),
-    genome,
-    state: copyMerge(
-      {
-        genome: toolGenome,
-        dslabel: toolDslabel,
-        termfilter: { filter0: arg.filter0 },
-        plots: [{ chartType: "grin2" }]
-      },
-      arg.state || {}
-    ),
-    app: arg.opts?.app || {}
-  });
-  return plotAppApi;
-}
-export {
-  gdcGRIN2ui
-};
-//# sourceMappingURL=grin2-BU5DLVNV.js.map

package/dist/hierCluster-FMF56N73.js

@@ -1,51 +0,0 @@
-import {
-  HierCluster,
-  componentInit,
-  hierClusterInit
-} from "./chunk-TYEHFGMJ.js";
-import "./chunk-EZGMD2WV.js";
-import "./chunk-J6WTOB2A.js";
-import "./chunk-MEUSRAOE.js";
-import "./chunk-6T4MN7LV.js";
-import "./chunk-Z5ECCUNG.js";
-import "./chunk-GUW7VTUL.js";
-import "./chunk-7NYLCZY5.js";
-import "./chunk-5DI4UNH5.js";
-import "./chunk-GBKQHVKJ.js";
-import "./chunk-W5SPLFIG.js";
-import "./chunk-22DUWEXJ.js";
-import "./chunk-IZPM6TWT.js";
-import "./chunk-C2MCQZWH.js";
-import "./chunk-DDKS3MV3.js";
-import "./chunk-EYKJQJ7R.js";
-import "./chunk-2OMX5AYB.js";
-import "./chunk-PMLMXEER.js";
-import "./chunk-V2OJLJSK.js";
-import "./chunk-JP4IU7DO.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-IRAB3OI7.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-4TJO2DGU.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  HierCluster,
-  componentInit,
-  hierClusterInit
-};
-//# sourceMappingURL=hierCluster-FMF56N73.js.map

package/dist/hierCluster-M57DFUAE.js

@@ -1,55 +0,0 @@
-import {
-  HierCluster,
-  componentInit,
-  hierClusterInit
-} from "./chunk-TYEHFGMJ.js";
-import "./chunk-EZGMD2WV.js";
-import {
-  getPlotConfig
-} from "./chunk-Z4XRHSLY.js";
-import "./chunk-J6WTOB2A.js";
-import "./chunk-MEUSRAOE.js";
-import "./chunk-6T4MN7LV.js";
-import "./chunk-Z5ECCUNG.js";
-import "./chunk-GUW7VTUL.js";
-import "./chunk-7NYLCZY5.js";
-import "./chunk-5DI4UNH5.js";
-import "./chunk-GBKQHVKJ.js";
-import "./chunk-W5SPLFIG.js";
-import "./chunk-22DUWEXJ.js";
-import "./chunk-IZPM6TWT.js";
-import "./chunk-C2MCQZWH.js";
-import "./chunk-DDKS3MV3.js";
-import "./chunk-EYKJQJ7R.js";
-import "./chunk-2OMX5AYB.js";
-import "./chunk-PMLMXEER.js";
-import "./chunk-V2OJLJSK.js";
-import "./chunk-JP4IU7DO.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-IRAB3OI7.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-4TJO2DGU.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  HierCluster,
-  componentInit,
-  getPlotConfig,
-  hierClusterInit
-};
-//# sourceMappingURL=hierCluster-M57DFUAE.js.map

package/dist/hierCluster.config-LD7RO2ZV.js

@@ -1,32 +0,0 @@
-import {
-  getPlotConfig
-} from "./chunk-Z4XRHSLY.js";
-import "./chunk-7NYLCZY5.js";
-import "./chunk-5DI4UNH5.js";
-import "./chunk-C2MCQZWH.js";
-import "./chunk-JP4IU7DO.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-IRAB3OI7.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-4TJO2DGU.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  getPlotConfig
-};
-//# sourceMappingURL=hierCluster.config-LD7RO2ZV.js.map

package/dist/hierCluster.integration.spec-NTIL7TK4.js

@@ -1,479 +0,0 @@
-import "./chunk-DYBH3E6G.js";
-import {
-  appInit
-} from "./chunk-UKKLAUYO.js";
-import "./chunk-VD4WX5ZG.js";
-import "./chunk-4E2F26CC.js";
-import "./chunk-FE5TCBIT.js";
-import {
-  detectOne,
-  sleep
-} from "./chunk-WA3C3A2M.js";
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import "./chunk-Q5LG4WR3.js";
-import "./chunk-LVATT455.js";
-import "./chunk-J3LWRVN3.js";
-import "./chunk-UHFO6LHS.js";
-import "./chunk-O6T4SDC7.js";
-import "./chunk-DJK3NKRK.js";
-import "./chunk-MKAF2BHB.js";
-import "./chunk-4FTH4L3A.js";
-import "./chunk-VLIOMJDR.js";
-import "./chunk-2CDIFQPW.js";
-import {
-  fillTermWrapper
-} from "./chunk-JP4IU7DO.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-IRAB3OI7.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-4TJO2DGU.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import {
-  TermTypes
-} from "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// plots/matrix/test/hierCluster.integration.spec.js
-var import_tape = __toESM(require_tape(), 1);
-(0, import_tape.default)("\n", function(test) {
-  test.comment("-***- plots/hierCluster.js -***-");
-  test.end();
-});
-(0, import_tape.default)("basic render", async (test) => {
-  test.timeoutAfter(4e3);
-  const { app, hc } = await getHierClusterApp({ terms: getGenes() });
-  test.equal(hc.dom.termLabelG.selectAll(".sjpp-matrix-label").size(), 4, "should render 4 gene rows");
-  test.equal(hc.dom.sampleLabelG.selectAll(".sjpp-matrix-label").size(), 60, "should render 60 sample columns");
-  if (test._ok) app.destroy();
-  test.end();
-});
-(0, import_tape.default)("filter", async (test) => {
-  test.timeoutAfter(4e3);
-  const { app, hc } = await getHierClusterApp({
-    terms: getGenes(),
-    filter: {
-      type: "tvslst",
-      join: "",
-      in: true,
-      lst: [{ type: "tvs", tvs: { term: { id: "diaggrp" }, values: [{ key: "Acute lymphoblastic leukemia" }] } }]
-    }
-  });
-  test.equal(hc.dom.sampleLabelG.selectAll(".sjpp-matrix-label").size(), 36, "should render 36 sample columns");
-  if (test._ok) app.destroy();
-  test.end();
-});
-(0, import_tape.default)("avoid race condition - specified gene list", async (test) => {
-  test.timeoutAfter(4e3);
-  test.plan(4);
-  const { app, hc } = await getHierClusterApp({ terms: getGenes() });
-  const termgroups = structuredClone(hc.config.termgroups);
-  const lst = await Promise.all([
-    fillTermWrapper({ term: { gene: "KRAS", name: "KRAS", type: "geneExpression" } }, app.vocabApi),
-    fillTermWrapper({ term: { gene: "AKT1", name: "AKT1", type: "geneExpression" } }, app.vocabApi),
-    fillTermWrapper({ term: { gene: "TP53", name: "TP53", type: "geneExpression" } }, app.vocabApi),
-    fillTermWrapper({ term: { gene: "BCR", name: "BCR", type: "geneExpression" } }, app.vocabApi)
-  ]);
-  termgroups[0].lst = lst;
-  const responseDelay = 250;
-  hc.origRequestData = hc.requestData;
-  hc.requestData = async () => {
-    const lst2 = hc.config.termgroups[0].lst;
-    const data = await hc.origRequestData({});
-    if (lst2.length === 3) return data;
-    await sleep(250);
-    return data;
-  };
-  const prom = {};
-  const postRenderTest = new Promise((resolve) => {
-    prom.resolve = resolve;
-  });
-  app.on("postRender.test1", () => {
-    app.on("postRender.test1", null);
-    prom.resolve();
-  });
-  await Promise.all([
-    app.dispatch({
-      type: "plot_edit",
-      id: hc.id,
-      config: { termgroups }
-    }),
-    (async () => {
-      await sleep(0);
-      const termgroups2 = structuredClone(hc.config.termgroups);
-      termgroups2[0].lst = lst.slice(0, 3);
-      await app.dispatch({
-        type: "plot_edit",
-        id: hc.id,
-        config: { termgroups: termgroups2 }
-      });
-    })()
-  ]);
-  await postRenderTest;
-  await sleep(responseDelay + 500);
-  test.equal(hc.dom.termLabelG.selectAll(".sjpp-matrix-label").size(), 3, "should render 3 gene rows");
-  const rects = hc.dom.seriesesG.selectAll(".sjpp-mass-series-g rect");
-  const hits = rects.filter((d) => d.key !== "BCR" && d.value.class != "WT" && d.value.class != "Blank");
-  test.equal(
-    rects.size(),
-    180,
-    "should have the expected total number of matrix cell rects, inlcuding WT and not tested"
-  );
-  test.equal(hits.size(), 180, "should have the expected number of matrix cell rects with hits");
-  test.equal(
-    app.Inner.dom.holder.selectAll(".sja_errorbar").filter(function() {
-      return this.style.display != "none";
-    }).size(),
-    0,
-    "should not display errors"
-  );
-  if (test._ok) app.destroy();
-});
-(0, import_tape.default)("avoid race condition - reused fetch response cache", async (test) => {
-  test.timeoutAfter(4e3);
-  test.plan(4);
-  const { app, hc } = await getHierClusterApp({ terms: getGenes() });
-  const termgroups = structuredClone(hc.config.termgroups);
-  const responseDelay = 250;
-  hc.origRequestData = hc.requestData;
-  hc.requestData = async () => {
-    const lst = hc.config.termgroups[0].lst;
-    const data = await hc.origRequestData({});
-    if (lst.length === 3) return data;
-    return data;
-    await sleep(responseDelay);
-    return data;
-  };
-  const prom = {};
-  const postRenderTest = new Promise((resolve) => {
-    prom.resolve = resolve;
-  });
-  app.on("postRender.test1", () => {
-    app.on("postRender.test1", null);
-    prom.resolve();
-  });
-  await Promise.all([
-    app.dispatch({
-      type: "plot_edit",
-      id: hc.id,
-      config: { termgroups }
-    }),
-    (async () => {
-      await sleep(0);
-      const _termgroups = structuredClone(termgroups);
-      _termgroups[0].lst = _termgroups[0].lst.slice(0, 3);
-      await app.dispatch({
-        type: "plot_edit",
-        id: hc.id,
-        config: { termgroups: _termgroups }
-      });
-    })()
-  ]);
-  await postRenderTest;
-  await sleep(responseDelay + 500);
-  test.equal(hc.dom.termLabelG.selectAll(".sjpp-matrix-label").size(), 3, "should render 3 gene rows");
-  const rects = hc.dom.seriesesG.selectAll(".sjpp-mass-series-g rect");
-  const hits = rects.filter((d) => d.key !== "BCR" && d.value.class != "WT" && d.value.class != "Blank");
-  test.equal(
-    rects.size(),
-    180,
-    "should have the expected total number of matrix cell rects, inlcuding WT and not tested"
-  );
-  test.equal(hits.size(), 180, "should have the expected number of matrix cell rects with hits");
-  test.equal(
-    app.Inner.dom.holder.selectAll(".sja_errorbar").filter(function() {
-      return this.style.display != "none";
-    }).size(),
-    0,
-    "should not display errors"
-  );
-  if (test._ok) app.destroy();
-});
-(0, import_tape.default)("dendrogram click", async function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(3);
-  let numRenders = 0;
-  const { app, hc } = await getHierClusterApp({ terms: getGenes() });
-  const img = await detectOne({ elem: hc.dom.topDendrogram.node(), selector: "image" });
-  const svgBox = hc.dom.svg.node().getBoundingClientRect();
-  const imgBox = img.getBBox();
-  img.dispatchEvent(
-    new MouseEvent("click", {
-      //'view': window,
-      bubbles: true,
-      cancelable: true,
-      clientX: svgBox.x + hc.dimensions.xOffset + imgBox.x + imgBox.width / 2,
-      clientY: svgBox.y + imgBox.y + imgBox.height / 2
-    })
-  );
-  test.deepEqual(
-    hc.clickedClusterIds,
-    [
-      46,
-      54,
-      37,
-      28,
-      27,
-      51,
-      53,
-      44,
-      49,
-      25,
-      34,
-      11,
-      20,
-      41,
-      45,
-      29,
-      33,
-      17,
-      15,
-      2,
-      38,
-      42,
-      30,
-      36,
-      22,
-      9,
-      14,
-      3,
-      4,
-      31,
-      13,
-      26,
-      1,
-      16,
-      8,
-      10,
-      5,
-      6,
-      7,
-      23,
-      47,
-      48,
-      35,
-      43,
-      21,
-      32,
-      18,
-      24,
-      56
-    ],
-    `should give the expected clickedClusterIds`
-  );
-  test.deepEqual(
-    ["Zoom in", "List 50 samples"],
-    [...hc.dom.dendroClickMenu.d.node().querySelectorAll(".sja_menuoption")].map((elem) => elem.__data__.label),
-    "should show the expected menu options on dendrogram click"
-  );
-  hc.dom.dendroClickMenu.d.node().querySelector(".sja_menuoption").parentNode.lastChild.click();
-  await sleep(5);
-  test.equal(
-    hc.dom.dendroClickMenu.d.node().querySelectorAll(".sjpp_row_wrapper").length,
-    50,
-    "should list the expected number of samples"
-  );
-  if (test._ok) {
-    hc.dom.dendroClickMenu.clear().hide();
-    app.destroy();
-  }
-});
-(0, import_tape.default)("numeric dictionary terms (float)", async function(test) {
-  const terms = [
-    {
-      id: "aaclassic_5",
-      // tw.id must be provided
-      term: { id: "aaclassic_5", name: "a1", type: "float" },
-      // requires {id,name,type}; term.name doesn't need to be real, unique name works
-      q: { mode: "continuous" }
-      // set to continuous to avoid validating tw.term.bins
-    },
-    { id: "hrtavg", term: { id: "hrtavg", name: "a2", type: "float" }, q: { mode: "continuous" } },
-    { id: "agedx", term: { id: "agedx", name: "a3", type: "float" }, q: { mode: "continuous" } }
-  ];
-  const { app, hc } = await getHierClusterApp({ terms, dataType: "float", termGroupName: "Numeric Dictionary Terms" });
-  test.equal(hc.dom.termLabelG.selectAll(".sjpp-matrix-label").size(), 3, "should render 3 rows");
-  if (test._ok) app.destroy();
-  test.end();
-});
-(0, import_tape.default)("isoform expression cluster", async function(test) {
-  test.timeoutAfter(4e3);
-  const terms = [
-    {
-      term: { isoform: "ENST00000269305", name: "ENST00000269305", type: "isoformExpression" }
-    },
-    {
-      term: { isoform: "ENST00000256078", name: "ENST00000256078", type: "isoformExpression" }
-    },
-    {
-      term: { isoform: "ENST00000311936", name: "ENST00000311936", type: "isoformExpression" }
-    }
-  ];
-  const { app, hc } = await getHierClusterApp({
-    terms,
-    dataType: "isoformExpression",
-    termGroupName: "Isoform Expression"
-  });
-  test.equal(hc.dom.termLabelG.selectAll(".sjpp-matrix-label").size(), 3, "should render 3 isoform rows");
-  if (test._ok) app.destroy();
-  test.end();
-});
-(0, import_tape.default)("ssGSEA cluster", async function(test) {
-  test.timeoutAfter(4e3);
-  const terms = [
-    { term: { id: "HALLMARK_ADIPOGENESIS", name: "HALLMARK_ADIPOGENESIS", type: "ssGSEA" } },
-    {
-      term: { id: "HALLMARK_ALLOGRAFT_REJECTION", name: "HALLMARK_ALLOGRAFT_REJECTION", type: "ssGSEA" }
-    },
-    {
-      term: { id: "HALLMARK_ANDROGEN_RESPONSE", name: "HALLMARK_ANDROGEN_RESPONSE", type: "ssGSEA" }
-    }
-  ];
-  const { app, hc } = await getHierClusterApp({
-    terms,
-    dataType: "ssGSEA",
-    termGroupName: "Gene Set Enrichment (ssGSEA)"
-  });
-  test.equal(hc.dom.termLabelG.selectAll(".sjpp-matrix-label").size(), 3, "should render 3 ssGSEA rows");
-  if (test._ok) app.destroy();
-  test.end();
-});
-(0, import_tape.default)("dnaMethylation cluster", async function(test) {
-  test.timeoutAfter(4e3);
-  const terms = [
-    {
-      term: { type: "dnaMethylation", chr: "chr17", start: 7673484, stop: 7681953, genomicFeatureType: "gene" }
-    },
-    {
-      term: { type: "dnaMethylation", chr: "chr17", start: 7663195, stop: 7671664, genomicFeatureType: "gene" }
-    },
-    {
-      term: { type: "dnaMethylation", chr: "chr17", start: 7673484, stop: 7681953, genomicFeatureType: "promoter" }
-    }
-  ];
-  const { app, hc } = await getHierClusterApp({ terms, dataType: "dnaMethylation", termGroupName: "DNA Methylation" });
-  test.equal(hc.dom.termLabelG.selectAll(".sjpp-matrix-label").size(), 3, "should render 3 methylation rows");
-  if (test._ok) app.destroy();
-  test.end();
-});
-(0, import_tape.default)("cluster rejects a non-continuous term mode", async function(test) {
-  test.timeoutAfter(4e3);
-  const terms = [
-    { term: { gene: "AKT1", name: "AKT1", type: "geneExpression" }, q: { mode: "discrete" } },
-    { term: { gene: "TP53", name: "TP53", type: "geneExpression" }, q: { mode: "continuous" } },
-    { term: { gene: "BCR", name: "BCR", type: "geneExpression" }, q: { mode: "continuous" } }
-  ];
-  const { app, hc } = await getHierClusterApp({ terms, dataType: "geneExpression" });
-  test.equal(
-    hc.dom.termLabelG.selectAll(".sjpp-matrix-label").size(),
-    0,
-    "should render no rows when a term is not in continuous mode"
-  );
-  if (test._ok) app.destroy();
-  test.end();
-});
-(0, import_tape.default)("cluster rejects incompatible numeric types", async function(test) {
-  test.timeoutAfter(4e3);
-  const terms = [
-    { term: { gene: "AKT1", name: "AKT1", type: "geneExpression" }, q: { mode: "continuous" } },
-    { term: { gene: "TP53", name: "TP53", type: "geneExpression" }, q: { mode: "continuous" } },
-    { term: { id: "agedx", name: "agedx", type: "float" }, q: { mode: "continuous" } }
-  ];
-  let rejected = false;
-  try {
-    const { app, hc } = await getHierClusterApp({ terms, dataType: "geneExpression" });
-    rejected = hc.dom.termLabelG.selectAll(".sjpp-matrix-label").size() === 0;
-    if (app) app.destroy();
-  } catch (e) {
-    rejected = true;
-  }
-  test.ok(rejected, "should reject a cluster mixing geneExpression and float terms");
-  test.end();
-});
-async function getHierClusterApp(_opts = {}) {
-  const holder = select_default("body").append("div");
-  const defaults = {
-    debug: true,
-    holder,
-    genome: "hg38-test",
-    state: {
-      genome: "hg38-test",
-      dslabel: "TermdbTest",
-      termfilter: { filter0: _opts.filter0 },
-      plots: [
-        {
-          chartType: "hierCluster",
-          dataType: _opts.dataType || TermTypes.GENE_EXPRESSION,
-          settings: {
-            hierCluster: {
-              termGroupName: _opts.termGroupName || "Gene Expression (CGC genes only)"
-            },
-            matrix: {
-              // the matrix autocomputes the colw based on available screen width,
-              // need to set an exact screen width for consistent tests using getBBox()
-              availContentWidth: 1200
-            }
-          },
-          // force empty termgroups, genes since the instance requestData() will not have expression data,
-          // and will cause a non-trival error if using the actual requestData(), which will be mocked below
-          termgroups: [],
-          // _opts.termgroups || [],
-          // !!! there will be an initial load error since this is an empty geneset,
-          // !!! but will be ignored since it's not relevant to this test
-          terms: _opts.terms || [],
-          filter: _opts.filter
-        }
-      ]
-    },
-    app: {
-      features: ["recover"],
-      callbacks: _opts?.app?.callbacks || {}
-    },
-    recover: {
-      undoHtml: "Undo",
-      redoHtml: "Redo",
-      resetHtml: "Restore",
-      adjustTrackedState(state) {
-        const s = structuredClone(state);
-        delete s.termfilter.filter0;
-        return s;
-      }
-    },
-    hierCluster: _opts?.hierCluster || {}
-  };
-  const opts = Object.assign(defaults, _opts);
-  const app = await appInit(opts);
-  holder.select(".sja_errorbar").node()?.lastChild?.click?.();
-  const hc = Object.values(app.Inner.components.plots).find(
-    (p) => p.type == "hierCluster" || p.chartType == "hierCluster"
-  ).Inner;
-  return { app, hc };
-}
-function getGenes() {
-  return [
-    { gene: "AKT1", type: "geneExpression" },
-    { gene: "TP53", type: "geneExpression" },
-    { gene: "BCR", type: "geneExpression" },
-    { gene: "KRAS", type: "geneExpression" }
-  ];
-}
-//# sourceMappingURL=hierCluster.integration.spec-NTIL7TK4.js.map