@sjcrh/proteinpaint-client 2.223.0 → 2.224.1

package/dist/tvs.categorical-3X6CO5EA.js

@@ -0,0 +1,28 @@
+import {
+  handler
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+export {
+  handler
+};
+//# sourceMappingURL=tvs.categorical-3X6CO5EA.js.map

package/dist/tvs.condition-YZQSSONN.js

@@ -0,0 +1,160 @@
+import {
+  escapeHtml
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.condition.js
+var handler = {
+  type: "condition",
+  term_name_gen,
+  get_pill_label,
+  getSelectRemovePos,
+  fillMenu,
+  setTvsDefaults
+};
+async function fillMenu(self, div, tvs) {
+  const bar_by_select = div.append("select").attr("class", "value_select").style("display", "block").style("margin", "5px 10px").style("padding", "3px").on("change", () => {
+    const new_tvs = JSON.parse(JSON.stringify(tvs));
+    const value = bar_by_select.node().value;
+    new_tvs.bar_by_grade = value === "grade";
+    new_tvs.bar_by_children = value === "sub";
+    if (value === "grade") {
+      new_tvs.value_by_max_grade = true;
+      delete new_tvs.value_by_most_recent;
+      delete new_tvs.value_by_computable_grade;
+    }
+    div.selectAll("*").remove();
+    fillMenu(self, div, new_tvs);
+  });
+  bar_by_select.append("option").attr("value", "grade").text("By Grade").property("selected", tvs.bar_by_grade);
+  bar_by_select.append("option").attr("value", "sub").text("By Subcondition").property("selected", tvs.bar_by_children);
+  const grade_type_select = div.append("select").attr("class", "grade_select").style("margin", "5px 10px").style("padding", "3px").style("display", tvs.bar_by_grade ? "block" : "none").on("change", () => {
+    const new_tvs = JSON.parse(JSON.stringify(tvs));
+    update_value_by(new_tvs);
+    div.selectAll("*").remove();
+    fillMenu(self, div, new_tvs);
+  });
+  grade_type_select.append("option").attr("value", "max").text("Max grade per patient").property("selected", tvs.value_by_max_grade);
+  grade_type_select.append("option").attr("value", "recent").text("Most recent grade per patient").property("selected", tvs.value_by_most_recent);
+  grade_type_select.append("option").attr("value", "computable").text("Any grade per patient").property("selected", tvs.value_by_computable_grade);
+  div.append("span").style("margin", "5px 10px").style("padding", "3px").style("display", tvs.bar_by_children ? "block" : "none").style("color", "#888").html("Using any grade per patient");
+  const body = { term1_q: {} };
+  for (const key in tvs) {
+    if (key.includes("_by_")) body.term1_q[key] = tvs[key];
+  }
+  const data = await self.opts.vocabApi.getCategories(tvs.term, self.filter, body);
+  const callback = (indexes) => {
+    const new_tvs = JSON.parse(JSON.stringify(tvs));
+    delete new_tvs.groupset_label;
+    new_tvs.values = data.lst.filter((v, i, array) => indexes.includes(i));
+    const bar_by_value = bar_by_select.node().value;
+    new_tvs.bar_by_grade = bar_by_value !== "sub";
+    new_tvs.bar_by_children = bar_by_value === "sub";
+    update_value_by(new_tvs);
+    try {
+      validateConditionTvs(new_tvs);
+    } catch (e) {
+      window.alert(e);
+      return;
+    }
+    self.dom.tip.hide();
+    self.opts.callback(new_tvs);
+  };
+  self.values_table = self.makeValueTable(div, tvs, data.lst, callback).node();
+  function update_value_by(new_tvs) {
+    const bar_by_value = bar_by_select.property("value");
+    const grade_type_value = grade_type_select.property("value");
+    if (bar_by_value === "sub") {
+      new_tvs.value_by_computable_grade = true;
+      delete new_tvs.value_by_max_grade;
+      delete new_tvs.value_by_most_recent;
+    } else {
+      new_tvs.value_by_max_grade = grade_type_value === "max";
+      new_tvs.value_by_most_recent = grade_type_value === "recent";
+      new_tvs.value_by_computable_grade = grade_type_value === "computable";
+    }
+  }
+}
+function term_name_gen(d) {
+  const name = d.term.name;
+  return name.length < 21 ? escapeHtml(name) : '<label title="' + escapeHtml(name) + '">' + escapeHtml(name.substring(0, 18)) + "...</label>";
+}
+function get_pill_label(tvs) {
+  return {
+    txt: escapeHtml(get_value_text(tvs)),
+    grade_type: tvs.bar_by_children ? "" : tvs.value_by_max_grade ? "[Max Grade]" : tvs.value_by_most_recent ? "[Most Recent Grade]" : tvs.value_by_computable_grade ? "[Any Grade]" : ""
+  };
+}
+function get_value_text(tvs) {
+  if (tvs.bar_by_grade || tvs.bar_by_children) {
+    if (tvs.values.length == 1) {
+      return tvs.values[0].label;
+    }
+    if (tvs.groupset_label) return tvs.groupset_label;
+    return tvs.values.length + (tvs.bar_by_grade ? " Grades" : "Subconditions");
+  }
+  if (tvs.grade_and_child) {
+    console.error(term);
+    return "todo";
+  }
+  throw "unknown tvs setting for a condition term";
+}
+function getSelectRemovePos(j) {
+  return j;
+}
+function setTvsDefaults(tvs) {
+  if (!tvs.values) tvs.values = [];
+  if (!tvs.bar_by_grade && !tvs.bar_by_children_) {
+    tvs.bar_by_grade = true;
+  }
+  if (!tvs.value_by_max_grade && !tvs.value_by_most_recent && !tvs.value_by_computable_grade) {
+    tvs.value_by_max_grade = true;
+  }
+}
+function validateConditionTvs(tvs) {
+  if (!tvs.term) throw "tvs.term is not defined";
+  if (!tvs.values) throw `.values[] missing for a term ${tvs.term.name}`;
+  if (!Array.isArray(tvs.values)) throw `.values[] is not an array for a term ${tvs.term.name}`;
+  if (!tvs.values.length) throw `no categories selected for ${tvs.term.name}`;
+  if (!tvs.values.every((v) => v.key !== void 0))
+    throw `every value in tvs.values[] must have 'key' defined for ${tvs.term.name}`;
+  if (tvs.term.isleaf == true) {
+    if (!tvs.bar_by_grade) throw `tvs.bar_by_grade must be true for leaf term ${tvs.term.name}`;
+    if (!tvs.value_by_max_grade && !tvs.value_by_most_recent && !tvs.value_by_computable_grade)
+      throw `unknown value_type for a bar_by_grade for condition term ${tvs.term.name}`;
+  } else {
+    if (tvs.bar_by_grade) {
+      if (!tvs.value_by_max_grade && !tvs.value_by_most_recent && !tvs.value_by_computable_grade)
+        throw `unknown value_type for a bar_by_grade for condition term ${tvs.term.name}`;
+    } else if (tvs.bar_by_children) {
+      if (!tvs.value_by_computable_grade)
+        throw `value_type must be value_by_computable_grade for bar_by_children for condition term ${tvs.term.name}`;
+    } else {
+      throw `neither bar_by_grade or bar_by_children is set for a condition term ${tvs.term.name}`;
+    }
+  }
+}
+export {
+  handler
+};
+//# sourceMappingURL=tvs.condition-YZQSSONN.js.map

package/dist/tvs.dt-GCMLLAJC.js

@@ -0,0 +1,34 @@
+import {
+  getDtTermValues,
+  getTvsByOrigin,
+  getTvsOrigins,
+  handler2 as handler
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+export {
+  getDtTermValues,
+  getTvsByOrigin,
+  getTvsOrigins,
+  handler
+};
+//# sourceMappingURL=tvs.dt-GCMLLAJC.js.map

package/dist/tvs.dtcnv.categorical-ZSYUQQXP.js

@@ -0,0 +1,31 @@
+import {
+  handler2 as handler
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.dtcnv.categorical.js
+var handler2 = Object.assign({}, handler, { type: "dtcnv" });
+export {
+  handler2 as handler
+};
+//# sourceMappingURL=tvs.dtcnv.categorical-ZSYUQQXP.js.map

package/dist/tvs.dtcnv.continuous-T67YFFAE.js

@@ -0,0 +1,72 @@
+import {
+  escapeHtml,
+  getTvsByOrigin,
+  getTvsOrigins,
+  handler2 as handler,
+  renderCnvConfig
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import {
+  getOriginLabel
+} from "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.dtcnv.continuous.js
+var handler2 = Object.assign({}, handler, { type: "dtcnv", fillMenu, get_pill_label });
+function fillMenu(self, div, tvs) {
+  const dscnv = self.opts.vocabApi.termdbConfig.queries?.cnv;
+  if (!dscnv) throw "cnv query is missing";
+  const cnvDefault = dscnv.cnvCutoffsByGene?.[tvs.term.parentTerm.name] || {
+    cnvMaxLength: dscnv.cnvMaxLength,
+    cnvGainCutoff: dscnv.cnvGainCutoff,
+    cnvLossCutoff: dscnv.cnvLossCutoff
+  };
+  const cnv = Object.assign({}, cnvDefault, tvs);
+  const arg = {
+    holder: div,
+    cnvGainCutoff: cnv.cnvGainCutoff,
+    cnvLossCutoff: cnv.cnvLossCutoff,
+    cnvMaxLength: cnv.cnvMaxLength,
+    cnvWT: cnv.cnvWT,
+    genotypeToggle: true,
+    fractionOverlap: cnv.fractionOverlap,
+    showOverlap: true,
+    byOrigin: getTvsByOrigin(self, tvs),
+    selectedOrigins: getTvsOrigins(self, tvs),
+    callback: (config) => {
+      const new_tvs = structuredClone(tvs);
+      Object.assign(new_tvs, config);
+      new_tvs.continuousCnv = true;
+      self.dom.tip.hide();
+      self.opts.callback(new_tvs);
+    }
+  };
+  renderCnvConfig(arg);
+}
+function get_pill_label(tvs, self) {
+  const txt = tvs.cnvWT ? "Wildtype" : "Altered";
+  const originLabel = getOriginLabel(tvs.origins, self && getTvsByOrigin(self, tvs));
+  return { txt: originLabel ? escapeHtml(`${txt} (${originLabel})`) : txt };
+}
+export {
+  handler2 as handler
+};
+//# sourceMappingURL=tvs.dtcnv.continuous-T67YFFAE.js.map

package/dist/tvs.dtfusion-VR2NAX3F.js

@@ -0,0 +1,31 @@
+import {
+  handler2 as handler
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.dtfusion.js
+var handler2 = Object.assign({}, handler, { type: "dtfusion" });
+export {
+  handler2 as handler
+};
+//# sourceMappingURL=tvs.dtfusion-VR2NAX3F.js.map

package/dist/tvs.dtitd-O3MIZPZO.js

@@ -0,0 +1,31 @@
+import {
+  handler2 as handler
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.dtitd.js
+var handler2 = Object.assign({}, handler, { type: "dtitd" });
+export {
+  handler2 as handler
+};
+//# sourceMappingURL=tvs.dtitd-O3MIZPZO.js.map

package/dist/tvs.dtsnvindel-6G7UNHSQ.js

@@ -0,0 +1,31 @@
+import {
+  handler2 as handler
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.dtsnvindel.js
+var handler2 = Object.assign({}, handler, { type: "dtsnvindel" });
+export {
+  handler2 as handler
+};
+//# sourceMappingURL=tvs.dtsnvindel-6G7UNHSQ.js.map

package/dist/tvs.dtsv-VZ2I4AMH.js

@@ -0,0 +1,31 @@
+import {
+  handler2 as handler
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.dtsv.js
+var handler2 = Object.assign({}, handler, { type: "dtsv" });
+export {
+  handler2 as handler
+};
+//# sourceMappingURL=tvs.dtsv-VZ2I4AMH.js.map

package/dist/tvs.multivalue-6KFI5ELB.js

@@ -0,0 +1,84 @@
+import {
+  handler
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.multivalue.js
+var handler2 = Object.assign({}, handler, {
+  type: "multivalue",
+  get_pill_label,
+  fillMenu,
+  setTvsDefaults
+});
+async function fillMenu(self, div, tvs) {
+  const data = await self.opts.vocabApi.getCategories(tvs.term, self.filter, self.opts.getCategoriesArguments || {});
+  const sortedVals = data.lst.sort((a, b) => {
+    return b.samplecount - a.samplecount;
+  });
+  const joinDiv = div.append("div").style("margin", "10px 10px 0px 10px").style("font-size", ".9em");
+  joinDiv.append("span").style("opacity", 0.6).text("Sample belongs to ");
+  const joinSelect = joinDiv.append("select");
+  joinSelect.append("option").attr("value", "or").text("any");
+  joinSelect.append("option").attr("value", "and").text("all");
+  joinSelect.property("value", tvs.join == "and" ? "and" : "or");
+  joinDiv.append("span").style("opacity", 0.6).text(" of the checked categories");
+  const callback = (indexes) => {
+    const new_tvs = JSON.parse(JSON.stringify(tvs));
+    delete new_tvs.groupset_label;
+    new_tvs.values = sortedVals.filter((v, index) => indexes.includes(index));
+    new_tvs.join = joinSelect.property("value");
+    try {
+      validateMultivalueTvs(new_tvs);
+    } catch (e) {
+      window.alert(e);
+      return;
+    }
+    self.dom.tip.hide();
+    self.opts.callback(new_tvs);
+  };
+  self.makeValueTable(div, tvs, sortedVals, callback);
+}
+function get_pill_label(tvs) {
+  if (tvs.values.length == 1) {
+    return handler.get_pill_label(tvs);
+  }
+  return { txt: `${tvs.values.length} groups (${tvs.join == "and" ? "all" : "any"})` };
+}
+function setTvsDefaults(tvs) {
+  if (!tvs.values) tvs.values = [];
+  if (!tvs.join) tvs.join = "or";
+}
+function validateMultivalueTvs(tvs) {
+  if (!tvs.term) throw "tvs.term is not defined";
+  if (!tvs.values) throw `.values[] missing for a term ${tvs.term.name}`;
+  if (!Array.isArray(tvs.values)) throw `.values[] is not an array for a term ${tvs.term.name}`;
+  if (!tvs.values.length) throw `no categories selected for ${tvs.term.name}`;
+  if (!tvs.values.every((v) => v.key !== void 0))
+    throw `every value in tvs.values[] must have 'key' defined for ${tvs.term.name}`;
+  if (tvs.values.length > 1 && tvs.join != "or" && tvs.join != "and")
+    throw `invalid tvs.join='${tvs.join}' for ${tvs.term.name}`;
+}
+export {
+  handler2 as handler
+};
+//# sourceMappingURL=tvs.multivalue-6KFI5ELB.js.map

package/dist/tvs.numeric-SFSOLXVF.js

@@ -0,0 +1,32 @@
+import {
+  format_val_text,
+  handler
+} from "./chunk-G4QRB64M.js";
+import "./chunk-OZUF7O2S.js";
+import "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+export {
+  format_val_text,
+  handler
+};
+//# sourceMappingURL=tvs.numeric-SFSOLXVF.js.map

package/dist/tvs.samplelst-WD5UMMTP.js

@@ -0,0 +1,95 @@
+import {
+  escapeHtml,
+  renderTable
+} from "./chunk-3YQYWX4M.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-R3RD3VEX.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.samplelst.js
+var handler = {
+  term_name_gen,
+  get_pill_label,
+  fillMenu,
+  getSelectRemovePos,
+  getNegateText(self) {
+    return self.tvs.isnot ? "NOT IN" : "IN";
+  }
+};
+async function fillMenu(self, div, tvs) {
+  tvs = JSON.parse(JSON.stringify(tvs));
+  div.selectAll("*").remove();
+  div = div.append("div");
+  div.style("font-size", "0.8em");
+  for (const field in tvs.term.values) {
+    if (tvs.term.values[field].in === false) continue;
+    addTable(div, tvs, field);
+  }
+  div.append("div").style("padding", "6px").append("button").attr("data-testid", "sjpp-tvs-samplelst-apply").text("Apply").on("click", () => {
+    for (const field in tvs.term.values) {
+      const value = tvs.term.values[field];
+      value.list = value.list.filter((s) => !("checked" in s) || s.checked);
+    }
+    self.opts.callback(tvs);
+  });
+}
+function addTable(div, tvs, field) {
+  div.style("padding", "6px").append("div").style("margin", "10px").style("font-size", "0.8rem").html(`<b> ${field}</b>.`);
+  const value = tvs.term.values[field];
+  const rows = [];
+  for (const sample of value.list) rows.push([{ value: sample.sample }]);
+  const columns = [{ label: "Sample" }];
+  renderTable({
+    rows,
+    columns,
+    div,
+    maxWidth: "30vw",
+    maxHeight: "40vh",
+    noButtonCallback: (index, node) => {
+      value.list[index].checked = node.checked;
+    },
+    striped: false,
+    showHeader: false,
+    selectAll: true
+  });
+}
+function getSelectRemovePos(j) {
+  return j;
+}
+function term_name_gen() {
+  return "Samples";
+}
+function get_pill_label(tvs) {
+  return { txt: getGroupLabel(tvs.term) };
+}
+function getGroupLabel(term) {
+  let n = 0;
+  for (const item in term.values) {
+    if (term.values[item].in === false) continue;
+    n += term.values[item].list.length;
+  }
+  return `${escapeHtml(term.name)} n=${n}`;
+}
+export {
+  addTable,
+  handler
+};
+//# sourceMappingURL=tvs.samplelst-WD5UMMTP.js.map