@sjcrh/proteinpaint-client 2.221.0 → 2.222.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-QFXSYOYN.js +1362 -0
- package/dist/AggMatrixInput-7D4ZUYJK.js +402 -0
- package/dist/AggregateMatrix-NVSFZEW3.js +37 -0
- package/dist/AppHeader-5YJWBQP6.js +826 -0
- package/dist/BoxPlot-52WWBGKN.js +1229 -0
- package/dist/CorrelationVolcano-WS23O2JT.js +613 -0
- package/dist/Cuminc-5LJQYFEE.js +1217 -0
- package/dist/DE-Z5GBDXDU.js +85 -0
- package/dist/DEinput-3EAIVG5U.js +479 -0
- package/dist/DM-24NZPPS6.js +86 -0
- package/dist/DifferentialAnalysis-LRAPDIXB.js +236 -0
- package/dist/Disco-IDOTCKSD.js +3384 -0
- package/dist/Disco.UI-SLJKAA6N.js +239 -0
- package/dist/DmrPlot-5CRGQNM3.js +361 -0
- package/dist/GB-YCDIORF3.js +1388 -0
- package/dist/GSEA-IGWX3AG7.js +870 -0
- package/dist/GeneExpInput-PPOTCILZ.js +38 -0
- package/dist/Geomap-D5JPCJ5L.js +80 -0
- package/dist/HicApp-BNMMISAR.js +2240 -0
- package/dist/IDCViewer-IUPPLC5B.js +10808 -0
- package/dist/NumBinaryEditor-45I5YNHI.js +274 -0
- package/dist/NumBinaryEditor.unit.spec-5CJPIDH4.js +308 -0
- package/dist/NumContEditor-VMCE5LUM.js +100 -0
- package/dist/NumContEditor.unit.spec-DKNXTVXT.js +160 -0
- package/dist/NumCustomBinEditor-3EESV7PW.js +29 -0
- package/dist/NumCustomBinEditor.unit.spec-JPOK7BWZ.js +393 -0
- package/dist/NumDiscreteEditor-YZ3Q4J4M.js +165 -0
- package/dist/NumDiscreteEditor.unit.spec-V6NSX72E.js +229 -0
- package/dist/NumRegularBinEditor-6GI63X5V.js +29 -0
- package/dist/NumRegularBinEditor.unit.spec-KCGZLQ6T.js +274 -0
- package/dist/NumSplineEditor-OMJUFDSC.js +205 -0
- package/dist/NumSplineEditor.unit.spec-KUB2OITH.js +220 -0
- package/dist/NumericDensity-M4BIVIB3.js +29 -0
- package/dist/NumericDensity.unit.spec-G3GJMO4S.js +414 -0
- package/dist/NumericHandler-AMV4BETD.js +30 -0
- package/dist/NumericHandler.unit.spec-OJDMQQHX.js +225 -0
- package/dist/ProteomeInput-KB7YRARQ.js +610 -0
- package/dist/Regression-5KSKHUEJ.js +1412 -0
- package/dist/RunChart2-JJ4GQF44.js +744 -0
- package/dist/SC-LKCBWZQX.js +1290 -0
- package/dist/Violin-JRP7R53K.js +1092 -0
- package/dist/Volcano-BDD3PZ4T.js +2661 -0
- package/dist/Wsi-3C3ERYSG.js +636 -0
- package/dist/aboutSunburst-2T5SLCCB.js +93 -0
- package/dist/aboutSunburst-2T5SLCCB.js.map +7 -0
- package/dist/adSandbox-GFF6ZCRM.js +29 -0
- package/dist/animatedBubbleChart-PUPXCFJW.js +542 -0
- package/dist/app-EICBB32X.js +28 -0
- package/dist/app-Z7M3CFWA.js +38 -0
- package/dist/app.js +8 -8
- package/dist/bam-KQ5F34X5.js +872 -0
- package/dist/barchart-WRAEMD7B.js +38 -0
- package/dist/barchart2-5CX3CO4K.js +305 -0
- package/dist/block-53QIZEH3.js +6203 -0
- package/dist/block.init-4V3SIUNX.js +29 -0
- package/dist/block.mds.expressionrank-5YNTX35V.js +350 -0
- package/dist/block.mds.geneboxplot-X5OHLSWT.js +819 -0
- package/dist/block.mds.junction-QBJF6MFG.js +1534 -0
- package/dist/block.mds.svcnv-BNCMHJJB.js +6413 -0
- package/dist/block.svg-KQELYSEO.js +155 -0
- package/dist/block.tk.aicheck-5EDNNXGL.js +274 -0
- package/dist/block.tk.bam-FRPCGSAE.js +1906 -0
- package/dist/block.tk.bigwig.ui-XUJPSA6D.js +202 -0
- package/dist/block.tk.hicstraw-MVLZALFC.js +814 -0
- package/dist/block.tk.junction-DLZNHWSA.js +2353 -0
- package/dist/block.tk.junction.textmatrixui-J3EODITY.js +190 -0
- package/dist/block.tk.ld-4GEJ2Y2K.js +90 -0
- package/dist/block.tk.menu-NM7KA5GZ.js +1050 -0
- package/dist/block.tk.pgv-XFOJACVC.js +934 -0
- package/dist/brainImaging-WFRZQANN.js +550 -0
- package/dist/brainRegions-66KWCUF2.js +213 -0
- package/dist/bubbleHeatmap-VKLIJOMM.js +374 -0
- package/dist/cellTypeBubbleHeatmap-ZPCXC52I.js +274 -0
- package/dist/chunk-2NDFMFNM.js +134 -0
- package/dist/chunk-34AGCF72.js +203 -0
- package/dist/chunk-3KKI63GB.js +96 -0
- package/dist/chunk-3LUHZYIN.js +14 -0
- package/dist/chunk-4ASBDE27.js +26731 -0
- package/dist/chunk-4ASBDE27.js.map +7 -0
- package/dist/chunk-5XXYEKE2.js +237 -0
- package/dist/chunk-6C3USAU5.js +848 -0
- package/dist/chunk-7F2FBQRP.js +35 -0
- package/dist/chunk-7TRD7A2U.js +141 -0
- package/dist/chunk-AG2PISH4.js +257 -0
- package/dist/chunk-BGYZJXYZ.js +2799 -0
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- package/dist/chunk-QI4EZK7S.js +2941 -0
- package/dist/chunk-QNSB6O4W.js +70 -0
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- package/dist/chunk-R55JRVX7.js.map +7 -0
- package/dist/chunk-RSMASA5S.js +340 -0
- package/dist/chunk-S2BMWHFY.js +54 -0
- package/dist/chunk-SKL52OWF.js +466 -0
- package/dist/chunk-TRWUXFVB.js +102 -0
- package/dist/chunk-URCFNXAK.js +2008 -0
- package/dist/chunk-V2D7DA2M.js +194 -0
- package/dist/chunk-V2ZVMDBY.js +480 -0
- package/dist/chunk-VIFY62YA.js +243 -0
- package/dist/chunk-VZ2JWFSX.js +296 -0
- package/dist/chunk-W5GR42L2.js +159 -0
- package/dist/chunk-WDOX6A6T.js +1339 -0
- package/dist/chunk-XPL54FXR.js +6375 -0
- package/dist/chunk-XV3KWMG3.js +103 -0
- package/dist/chunk-YFFQ7JTJ.js +123 -0
- package/dist/chunk-ZD6AIFTS.js +1253 -0
- package/dist/chunk-ZDVYAOWC.js +516 -0
- package/dist/chunk-ZKIC65KR.js +2685 -0
- package/dist/chunk-ZPRI5XCE.js +82 -0
- package/dist/cohort-CI22KICX.js +66 -0
- package/dist/cohortSunburst-Z5DANXVS.js +402 -0
- package/dist/condition-GZOA7BZJ.js +323 -0
- package/dist/controls-OWC25VQN.js +30 -0
- package/dist/controls.config-UVC4Q7BS.js +30 -0
- package/dist/correlation-EBA5YVXA.js +91 -0
- package/dist/customdata.inputui-FZRZCPS3.js +280 -0
- package/dist/dataDownload-WIPQU33P.js +326 -0
- package/dist/databrowser.ui-6L6Q72W4.js +421 -0
- package/dist/dictionary-4VZEPGW5.js +109 -0
- package/dist/dnaMethylation-LN6THRNZ.js +29 -0
- package/dist/dnaMethylation.integration.spec-BXC6EPUV.js +194 -0
- package/dist/e2pca-EXFI4Q2Y.js +340 -0
- package/dist/ep-T7EZ34XV.js +1247 -0
- package/dist/expclust.gdc.spec-NAN4M75R.js +298 -0
- package/dist/facet-BJFUIWHK.js +556 -0
- package/dist/gb-CBC3PDKZ.js +77 -0
- package/dist/geneExpClustering-7JFY7TQT.js +240 -0
- package/dist/geneExpression-FOQOKD34.js +29 -0
- package/dist/geneExpression.unit.spec-XSFC5ZJP.js +151 -0
- package/dist/geneORA-KYPN66QU.js +269 -0
- package/dist/geneRanking-VEHFMRFL.js +544 -0
- package/dist/geneVariant-77V6FNJX.js +289 -0
- package/dist/geneVariant-BS3XZFYM.js +32 -0
- package/dist/geneVariant.integration.spec-US4OY3S5.js +672 -0
- package/dist/genefusion.ui-YNVTTLDE.js +299 -0
- package/dist/geneset-BH5MWNJQ.js +199 -0
- package/dist/genomeBrowser.spec-BFTGLRHG.js +272 -0
- package/dist/grin2-4AXUYJIL.js +66 -0
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- package/dist/hierCluster-IJHBVO2N.js +55 -0
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- package/dist/hierCluster.config-UUQEFTIG.js +32 -0
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- package/dist/hierCluster.interactivity-6CN5PNFR.js +45 -0
- package/dist/imagePlot-HKPPACFV.js +152 -0
- package/dist/importPlot-EMI6BVPR.js +8 -0
- package/dist/isoformExpression-SFBA3SY7.js +31 -0
- package/dist/isoformExpression.unit.spec-JKYWHGRN.js +233 -0
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- package/dist/launch.adhoc-R7SYX6GF.js +33 -0
- package/dist/leftlabel.sample-XJUDFAKS.js +253 -0
- package/dist/lollipop-V43BWGBT.js +162 -0
- package/dist/maf-KU44HXN3.js +451 -0
- package/dist/maftimeline-JPHVYTTU.js +583 -0
- package/dist/matrix-EABQEAMC.js +50 -0
- package/dist/matrix-HMLF5MDD.js +55 -0
- package/dist/matrix.config-RX5GWHTM.js +33 -0
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- package/dist/matrix.renderers-UGQXONTG.js +30 -0
- package/dist/matrix.sort.unit.spec-FJKIBDTU.js +464 -0
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- package/dist/matrix.unit.spec-7Y3BKFNQ.js +146 -0
- package/dist/mavb-ADD57P2Q.js +726 -0
- package/dist/mds.fimo-7WH5GVFZ.js +509 -0
- package/dist/mds.samplescatterplot-JYFOORUG.js +1545 -0
- package/dist/mds.survivalplot-2V4H3YZY.js +472 -0
- package/dist/multivalue-GLS3RPQ5.js +79 -0
- package/dist/oncomatrix-QA267TP2.js +286 -0
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- package/dist/plot.barplot-KBVYKICH.js +93 -0
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- package/dist/plot.brainImaging-GGUARYRT.js +51 -0
- package/dist/plot.disco-EP274JEW.js +98 -0
- package/dist/plot.ssgq-4VUH3ZWV.js +130 -0
- package/dist/plot.vaf2cov-2FPWA2FS.js +249 -0
- package/dist/polar2-7W5JRMB5.js +228 -0
- package/dist/profileForms-2IKL3SZU.js +937 -0
- package/dist/profilePlot-IURW2HQN.js +45 -0
- package/dist/proteinView-4ZRODQN3.js +1346 -0
- package/dist/proteomeCohortCompare-BK3FLW4Z.js +866 -0
- package/dist/pseudbulk.unit.spec-QGQCCHNF.js +82 -0
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- package/dist/selectGenomeWithTklst-LGBKEN3T.js +125 -0
- package/dist/singleCellCellType-ACQACM6W.js +29 -0
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- package/dist/singleCellGeneExpression-M4RPITJW.js +29 -0
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- /package/dist/{tvs.dtcnv.categorical-PPFQIC42.js.map → tvs.dtcnv.categorical-H7FKTXH4.js.map} +0 -0
- /package/dist/{tvs.dtcnv.continuous-TV2IGHY4.js.map → tvs.dtcnv.continuous-JQ62ZHER.js.map} +0 -0
- /package/dist/{tvs.dtfusion-ON4BA4XJ.js.map → tvs.dtfusion-GC3DZ2BO.js.map} +0 -0
- /package/dist/{tvs.dtitd-VFNROOWQ.js.map → tvs.dtitd-3SHGIDIB.js.map} +0 -0
- /package/dist/{tvs.dtsnvindel-ZXOP37T5.js.map → tvs.dtsnvindel-BEDWZ4A2.js.map} +0 -0
- /package/dist/{tvs.dtsv-EUHPTW7J.js.map → tvs.dtsv-HRIMULVD.js.map} +0 -0
- /package/dist/{tvs.multivalue-NHVXZNDI.js.map → tvs.multivalue-5VC7BLSZ.js.map} +0 -0
- /package/dist/{tvs.numeric-FPWDPO3J.js.map → tvs.numeric-TGEC7G6A.js.map} +0 -0
- /package/dist/{tvs.samplelst-ZZHRNUP4.js.map → tvs.samplelst-Q6EYAUQZ.js.map} +0 -0
- /package/dist/{tvs.survival-F3KSG3U6.js.map → tvs.survival-NJ3DTZIG.js.map} +0 -0
- /package/dist/{tvs.termCollection-B37DZLDY.js.map → tvs.termCollection-TVVLPSTG.js.map} +0 -0
- /package/dist/{vocabulary-XNE5FFDK.js.map → vocabulary-A7ZBBU65.js.map} +0 -0
- /package/dist/{wsi.direct-3YH3QGQD.js.map → wsi.direct-JJGIAH6A.js.map} +0 -0
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import {
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agedx
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} from "./chunk-32AI7I4C.js";
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import {
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termjson
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} from "./chunk-CWWE77DH.js";
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import {
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require_tape
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} from "./chunk-PJYCTAMC.js";
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import {
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NumericDensity
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} from "./chunk-WY3IORKG.js";
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import {
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TwRouter
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} from "./chunk-WD7FZ5EE.js";
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import "./chunk-RIHO7ZD5.js";
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import "./chunk-TVJOSRCH.js";
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import "./chunk-5R63Q5KH.js";
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import {
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select_default
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} from "./chunk-I6Y4O3RR.js";
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import "./chunk-Q5RDQNIT.js";
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import {
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__toESM
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} from "./chunk-HS5PO5ZQ.js";
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// termsetting/handlers/test/NumericDensity.unit.spec.ts
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var import_tape = __toESM(require_tape(), 1);
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async function getNumericDensity(opts = {}) {
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const term = opts.term || JSON.parse(JSON.stringify(termjson.agedx));
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const violinData = opts.violinData || agedx;
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const rawTw = {
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term,
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q: {
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mode: "continuous"
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}
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};
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const tw = await TwRouter.initRaw(rawTw);
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const density = new NumericDensity({
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termsetting: {
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tw,
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term: rawTw.term,
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q: rawTw.q,
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opts: {
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// numericEditMenuVersion: ['continuous', 'discrete', 'binary', 'spline'],
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// usecase: opts.usecase
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...opts
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},
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api: {
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runCallback() {
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}
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},
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dom: {
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tip: {
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hide() {
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}
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}
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},
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vocabApi: {
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getViolinBox() {
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return violinData;
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}
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}
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}
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});
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const holder = select_default("body").append("div").style("position", "fixed").style("top", 500).style("left", 500).style("width", "fit-content").style("margin", "20px").style("padding", "5px").style("border", "1px solid #000");
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return {
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rawTw,
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tw,
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holder,
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density,
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destroy: () => {
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density.destroy();
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holder.remove();
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}
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};
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}
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var DAY_TO_YEAR = 1 / 365.25;
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function getConvertedTerm(overrides = {}) {
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const term = JSON.parse(JSON.stringify(termjson.agedx));
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term.valueConversion = { fromUnit: "day", toUnit: "year", scaleFactor: DAY_TO_YEAR };
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return Object.assign(term, overrides);
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}
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async function dragFirstLine(density, values, xOffset = 150) {
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let resolve;
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const dragged = new Promise((res) => resolve = res);
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await density.setBinLines({
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values,
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callback(lineData, value) {
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resolve({ lineData, value });
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}
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});
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const lines = [...density.dom.binsize_g.node().querySelectorAll("line")];
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simulateDrag(lines[0], xOffset);
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return dragged;
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}
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function simulateDrag(elem, xOffset) {
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const box = elem.getBoundingClientRect();
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const draggedX = box.x + xOffset;
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elem.dispatchEvent(
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new MouseEvent("mousedown", {
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bubbles: true,
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cancelable: true,
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clientX: box.x,
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clientY: box.y,
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view: window
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})
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);
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elem.dispatchEvent(
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new MouseEvent("mouseup", {
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bubbles: true,
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cancelable: true,
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clientX: draggedX,
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clientY: 150,
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view: window
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})
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);
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}
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(0, import_tape.default)("violin as density plot", async (test) => {
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const { density, holder, destroy } = await getNumericDensity();
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await density.showViolin(holder);
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test.equal(holder.selectAll("svg").size(), 1, `should render a density plot svg`);
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test.equal(holder.selectAll("svg image").size(), 1, `should render an image inside the svg`);
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if (test._ok) destroy();
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test.end();
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});
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(0, import_tape.default)("1 draggable line without lastVisibleLine", async (test) => {
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test.timeoutAfter(20);
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test.plan(4);
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const { density, holder, destroy } = await getNumericDensity();
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await density.showViolin(holder);
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let hasTestedCallback = false;
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const values = [
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{ x: 100, isDraggable: true, movesWithLineIndex: -1 },
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{ x: 1e3, movesWithLineIndex: 0 },
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{ x: 3e3, movesWithLineIndex: 0 }
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];
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density.setBinLines({
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values,
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callback(lineData, value) {
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if (hasTestedCallback === true) return;
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hasTestedCallback = true;
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const comparableKeys = Object.keys(values[0]);
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test.deepEqual(
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Object.fromEntries(Object.entries(lineData).filter((kv) => comparableKeys.includes(kv[0]))),
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values[0],
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`should provide a copy of the draggable line data as the first argument to callback`
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);
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test.true((value - 1516.62) / value < 0.01, `should provide the value as the second argument to callback`);
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test.deepEqual(
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lines.filter((l) => l.style.display !== "none").map((l, i) => Math.abs(Math.floor(Number(l.getAttribute("x1")) - x1b4drag[i] - xOffset)) < 2),
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// check that the difference between expected and actual x values is less than a few pixels
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[true, true, true],
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`should also move non-draggable lines in the expected x-positions of the density plot`
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);
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if (test._ok) destroy();
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test.end();
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}
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});
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const lines = [...density.dom.binsize_g.node().querySelectorAll("line")];
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const x1b4drag = [21, 116, 328];
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test.deepEqual(
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lines.filter((l) => l.style.display !== "none").map((l) => Number(l.getAttribute("x1"))),
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x1b4drag,
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`should render 3 visible lines in the expected x-positions of the density plot`
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);
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const xOffset = 150;
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simulateDrag(lines[0], xOffset);
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});
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(0, import_tape.default)("1 draggable line with lastVisibleLine", async (test) => {
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test.timeoutAfter(20);
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test.plan(4);
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const { density, holder, destroy } = await getNumericDensity();
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await density.showViolin(holder);
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let hasTestedCallback = false;
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const values = [
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{ x: 100, isDraggable: true, movesWithLineIndex: -1 },
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{ x: 500, movesWithLineIndex: 0 },
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{ x: 1e3, movesWithLineIndex: 0 },
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{ x: 2e3, isDraggable: true, isLastVisibleLine: true }
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];
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density.setBinLines({
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values,
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callback(lineData, value) {
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if (hasTestedCallback === true) return;
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hasTestedCallback = true;
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const comparableKeys = Object.keys(values[0]);
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test.deepEqual(
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Object.fromEntries(Object.entries(lineData).filter((kv) => comparableKeys.includes(kv[0]))),
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values[0],
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`should provide a copy of the draggable line data as the first argument to callback`
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);
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test.true((value - 1516.62) / value < 0.01, `should provide the value as the second argument to callback`);
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const expectedXDiff = [0, 0, 44];
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test.deepEqual(
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lines.filter((l) => l.style.display !== "none").map(
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(l, i) => Math.abs(Math.floor(Number(l.getAttribute("x1")) - x1b4drag[i] - xOffset) + expectedXDiff[i]) < 2
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),
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// check that the difference between expected and actual x values is less than a few pixels
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[true, true, true],
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`should also move non-draggable lines in the expected x-positions of the density plot`
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);
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if (test._ok) destroy();
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test.end();
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}
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});
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const lines = [...density.dom.binsize_g.node().querySelectorAll("line")];
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const x1b4drag = [21, 63, 116, 222];
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test.deepEqual(
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lines.filter((l) => l.style.display !== "none").map((l) => Number(l.getAttribute("x1"))),
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x1b4drag,
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`should render 3 visible lines in the expected x-positions of the density plot`
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);
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const xOffset = 150;
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simulateDrag(lines[0], xOffset);
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});
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(0, import_tape.default)("converted term: plot range in the user-facing unit", async (test) => {
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test.timeoutAfter(1e3);
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const { density, holder, destroy } = await getNumericDensity({ term: getConvertedTerm() });
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await density.showViolin(holder);
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test.equal(density.scaleFactor, DAY_TO_YEAR, `should take the scaleFactor from term.valueConversion`);
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test.equal(
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density.displayMin,
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agedx.min * DAY_TO_YEAR,
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`should state the plot minimum in the user-facing unit`
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);
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test.equal(
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density.displayMax,
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agedx.max * DAY_TO_YEAR,
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`should state the plot maximum in the user-facing unit`
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);
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test.notEqual(
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density.displayMax,
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Number((agedx.max * DAY_TO_YEAR).toFixed(2)),
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`should not round the plot maximum to the decimals an editor input shows`
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);
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await density.setBinLines({ values: [{ x: 2, isDraggable: true }], callback() {
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} });
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test.deepEqual(
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density.xscale.domain(),
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density.vr.axisScaleUI.domain(),
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`should give xscale the same domain as the violin axis it overlays`
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);
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const v = 5;
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test.equal(
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density.xscale(v) + density.plot_size.xpad,
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density.vr.axisScaleUI(v) + density.vr.shiftx,
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`should map a value to the same x as the violin axis, allowing for the two group translations`
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);
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if (test._ok) destroy();
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test.end();
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});
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(0, import_tape.default)("converted term: a range narrower than the rounding of a displayed value", async (test) => {
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test.timeoutAfter(1e3);
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const violinData = { ...agedx, min: 100.5, max: 101.5 };
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const { density, holder, destroy } = await getNumericDensity({ term: getConvertedTerm(), violinData });
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await density.showViolin(holder);
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test.equal(
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Number(density.displayMin.toFixed(2)),
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Number(density.displayMax.toFixed(2)),
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`the test data should be a range that rounds to a single value in the user-facing unit`
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);
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test.notEqual(density.displayMin, density.displayMax, `should keep the two plot endpoints distinct`);
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const { value } = await dragFirstLine(density, [{ x: 101 * DAY_TO_YEAR, isDraggable: true }]);
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test.true(Number.isFinite(value), `should report a value for a drag within the plot`);
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281
|
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test.equal(
|
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282
|
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Math.round(density.xscale(density.displayMax)) - Math.round(density.xscale(density.displayMin)),
|
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283
|
-
density.plot_size.width,
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|
284
|
-
`should scale the range over the full width of the plot`
|
|
285
|
-
);
|
|
286
|
-
if (test._ok) destroy();
|
|
287
|
-
test.end();
|
|
288
|
-
});
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289
|
-
(0, import_tape.default)("dragged value is rounded for the unit it is reported in", async (test) => {
|
|
290
|
-
test.timeoutAfter(1e3);
|
|
291
|
-
const converted = await getNumericDensity({ term: getConvertedTerm() });
|
|
292
|
-
await converted.density.showViolin(converted.holder);
|
|
293
|
-
const convertedDrag = await dragFirstLine(converted.density, [{ x: 2, isDraggable: true }]);
|
|
294
|
-
test.equal(
|
|
295
|
-
Number(convertedDrag.value.toFixed(2)),
|
|
296
|
-
convertedDrag.value,
|
|
297
|
-
`should report a converted value with no more than 2 decimals`
|
|
298
|
-
);
|
|
299
|
-
test.true(
|
|
300
|
-
convertedDrag.value > 2 && convertedDrag.value > converted.density.displayMin && convertedDrag.value < converted.density.displayMax,
|
|
301
|
-
`should report a converted value that moved to the right and stayed within the plot range (got ${convertedDrag.value})`
|
|
302
|
-
);
|
|
303
|
-
if (test._ok) converted.destroy();
|
|
304
|
-
const term = JSON.parse(JSON.stringify(termjson.agedx));
|
|
305
|
-
term.type = "integer";
|
|
306
|
-
const integer = await getNumericDensity({ term });
|
|
307
|
-
await integer.density.showViolin(integer.holder);
|
|
308
|
-
test.equal(integer.density.scaleFactor, 1, `should not convert a term without valueConversion`);
|
|
309
|
-
const integerDrag = await dragFirstLine(integer.density, [{ x: 100, isDraggable: true }]);
|
|
310
|
-
test.equal(
|
|
311
|
-
integerDrag.value,
|
|
312
|
-
Math.round(integerDrag.value),
|
|
313
|
-
`should report a whole number for an unconverted integer term`
|
|
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|
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);
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|
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|
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if (test._ok) integer.destroy();
|
|
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|
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test.end();
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317
|
-
});
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318
|
-
(0, import_tape.default)("a dragged line stops at its neighboring line", async (test) => {
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319
|
-
test.timeoutAfter(1e3);
|
|
320
|
-
const { density, holder, destroy } = await getNumericDensity();
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|
-
await density.showViolin(holder);
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|
-
const calls = [];
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|
323
|
-
const values = [
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324
|
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{ x: 100, isDraggable: true },
|
|
325
|
-
{ x: 2e3, isDraggable: true }
|
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|
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];
|
|
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|
-
await density.setBinLines({
|
|
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|
-
values,
|
|
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|
-
callback(lineData, value) {
|
|
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|
-
calls.push({ index: lineData.index, value });
|
|
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|
-
}
|
|
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|
-
});
|
|
333
|
-
const lines = [...density.dom.binsize_g.node().querySelectorAll("line")];
|
|
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|
-
const lineX = (i) => Number(lines[i].getAttribute("x1"));
|
|
335
|
-
const neighborX = lineX(1);
|
|
336
|
-
simulateDrag(lines[0], 400);
|
|
337
|
-
test.equal(calls.length, 1, `should report the drag of a line that is dragged past its neighbor`);
|
|
338
|
-
test.true(
|
|
339
|
-
calls[0].value < values[1].x,
|
|
340
|
-
`should report a value below the neighboring boundary (got ${calls[0].value})`
|
|
341
|
-
);
|
|
342
|
-
test.true(lineX(0) < neighborX, `should stop the dragged line before the neighboring line`);
|
|
343
|
-
test.equal(lineX(1), neighborX, `should leave the neighboring line where it was`);
|
|
344
|
-
simulateDrag(lines[0], -800);
|
|
345
|
-
test.true(calls[1].value > density.displayMin, `should report a value above the plot minimum (got ${calls[1].value})`);
|
|
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|
-
test.true(lineX(0) > Math.round(density.xscale(density.displayMin)), `should stop the dragged line inside the plot`);
|
|
347
|
-
const draggedX = lineX(0);
|
|
348
|
-
simulateDrag(lines[1], -800);
|
|
349
|
-
test.true(lineX(1) > draggedX, `should stop a line dragged to the left after its neighboring line`);
|
|
350
|
-
test.true(
|
|
351
|
-
calls[calls.length - 1].value > calls[1].value,
|
|
352
|
-
`should report a value above the neighboring boundary (got ${calls[calls.length - 1].value})`
|
|
353
|
-
);
|
|
354
|
-
if (test._ok) destroy();
|
|
355
|
-
test.end();
|
|
356
|
-
});
|
|
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|
-
(0, import_tape.default)("a boundary line drawn outside the plot is still draggable", async (test) => {
|
|
358
|
-
test.timeoutAfter(1e3);
|
|
359
|
-
const { density, holder, destroy } = await getNumericDensity();
|
|
360
|
-
await density.showViolin(holder);
|
|
361
|
-
const calls = [];
|
|
362
|
-
await density.setBinLines({
|
|
363
|
-
// agedx values run to 4710, so a boundary of 9000 is drawn past the right edge of the plot
|
|
364
|
-
values: [
|
|
365
|
-
{ x: 100, isDraggable: true },
|
|
366
|
-
{ x: 9e3, isDraggable: true }
|
|
367
|
-
],
|
|
368
|
-
callback(_, value) {
|
|
369
|
-
calls.push(value);
|
|
370
|
-
}
|
|
371
|
-
});
|
|
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|
-
const lines = [...density.dom.binsize_g.node().querySelectorAll("line")];
|
|
373
|
-
const scaledMaxX = Math.round(density.xscale(density.displayMax));
|
|
374
|
-
test.true(
|
|
375
|
-
Number(lines[1].getAttribute("x1")) > scaledMaxX,
|
|
376
|
-
`the test data should put the second line past the right edge of the plot`
|
|
377
|
-
);
|
|
378
|
-
simulateDrag(lines[1], -30);
|
|
379
|
-
test.equal(calls.length, 1, `should report a drag of a line that is drawn outside the plot`);
|
|
380
|
-
test.true(calls[0] <= density.displayMax, `should report a value within the plot range (got ${calls[0]})`);
|
|
381
|
-
test.equal(
|
|
382
|
-
Number(lines[1].getAttribute("x1")),
|
|
383
|
-
scaledMaxX - 1,
|
|
384
|
-
`should move the line to just inside the edge of the plot`
|
|
385
|
-
);
|
|
386
|
-
if (test._ok) destroy();
|
|
387
|
-
test.end();
|
|
388
|
-
});
|
|
389
|
-
(0, import_tape.default)("a dragged line does not report the value of its neighboring line", async (test) => {
|
|
390
|
-
test.timeoutAfter(1e3);
|
|
391
|
-
const term = JSON.parse(JSON.stringify(termjson.agedx));
|
|
392
|
-
term.type = "integer";
|
|
393
|
-
const violinData = { ...agedx, min: 0, max: 10 };
|
|
394
|
-
const { density, holder, destroy } = await getNumericDensity({ term, violinData });
|
|
395
|
-
await density.showViolin(holder);
|
|
396
|
-
const calls = [];
|
|
397
|
-
await density.setBinLines({
|
|
398
|
-
values: [
|
|
399
|
-
{ x: 5, isDraggable: true },
|
|
400
|
-
{ x: 6, isDraggable: true }
|
|
401
|
-
],
|
|
402
|
-
callback(_, value) {
|
|
403
|
-
calls.push(value);
|
|
404
|
-
}
|
|
405
|
-
});
|
|
406
|
-
const lines = [...density.dom.binsize_g.node().querySelectorAll("line")];
|
|
407
|
-
simulateDrag(lines[0], 45);
|
|
408
|
-
test.deepEqual(calls, [], `should not report a drag that rounds onto the neighboring boundary`);
|
|
409
|
-
simulateDrag(lines[0], -60);
|
|
410
|
-
test.deepEqual(calls, [4], `should report a drag that rounds to a value between the neighboring boundaries`);
|
|
411
|
-
if (test._ok) destroy();
|
|
412
|
-
test.end();
|
|
413
|
-
});
|
|
414
|
-
//# sourceMappingURL=NumericDensity.unit.spec-2347S76D.js.map
|
|
@@ -1,30 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
NumericHandler
|
|
3
|
-
} from "./chunk-HRTPGNOG.js";
|
|
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|
-
import "./chunk-WY3IORKG.js";
|
|
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|
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import "./chunk-WD7FZ5EE.js";
|
|
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|
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import "./chunk-HJ6L54YS.js";
|
|
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|
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import "./chunk-WXSMUSU7.js";
|
|
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|
-
import "./chunk-CNFTQSNE.js";
|
|
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|
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import "./chunk-RIHO7ZD5.js";
|
|
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|
-
import "./chunk-TVJOSRCH.js";
|
|
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|
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import "./chunk-3CIL7KH7.js";
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|
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import "./chunk-T4XPCSLP.js";
|
|
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|
-
import "./chunk-4TJO2DGU.js";
|
|
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|
-
import "./chunk-W5J3LTYS.js";
|
|
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|
-
import "./chunk-MHWYRNGA.js";
|
|
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|
-
import "./chunk-JHLF2ZC2.js";
|
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|
-
import "./chunk-WJLRU5OF.js";
|
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|
-
import "./chunk-HBNB5TRH.js";
|
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|
-
import "./chunk-PF4DSFDR.js";
|
|
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|
-
import "./chunk-4OLM3KSB.js";
|
|
21
|
-
import "./chunk-PWYMHUXY.js";
|
|
22
|
-
import "./chunk-TLT4YIG3.js";
|
|
23
|
-
import "./chunk-5R63Q5KH.js";
|
|
24
|
-
import "./chunk-I6Y4O3RR.js";
|
|
25
|
-
import "./chunk-Q5RDQNIT.js";
|
|
26
|
-
import "./chunk-HS5PO5ZQ.js";
|
|
27
|
-
export {
|
|
28
|
-
NumericHandler
|
|
29
|
-
};
|
|
30
|
-
//# sourceMappingURL=NumericHandler-3RT32PTR.js.map
|
|
@@ -1,225 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
sleep
|
|
3
|
-
} from "./chunk-WA3C3A2M.js";
|
|
4
|
-
import {
|
|
5
|
-
agedx
|
|
6
|
-
} from "./chunk-32AI7I4C.js";
|
|
7
|
-
import {
|
|
8
|
-
termjson
|
|
9
|
-
} from "./chunk-CWWE77DH.js";
|
|
10
|
-
import {
|
|
11
|
-
require_tape
|
|
12
|
-
} from "./chunk-PJYCTAMC.js";
|
|
13
|
-
import {
|
|
14
|
-
NumericHandler
|
|
15
|
-
} from "./chunk-HRTPGNOG.js";
|
|
16
|
-
import "./chunk-WY3IORKG.js";
|
|
17
|
-
import {
|
|
18
|
-
TwRouter
|
|
19
|
-
} from "./chunk-WD7FZ5EE.js";
|
|
20
|
-
import "./chunk-HJ6L54YS.js";
|
|
21
|
-
import "./chunk-WXSMUSU7.js";
|
|
22
|
-
import "./chunk-CNFTQSNE.js";
|
|
23
|
-
import "./chunk-RIHO7ZD5.js";
|
|
24
|
-
import "./chunk-TVJOSRCH.js";
|
|
25
|
-
import "./chunk-3CIL7KH7.js";
|
|
26
|
-
import "./chunk-T4XPCSLP.js";
|
|
27
|
-
import "./chunk-4TJO2DGU.js";
|
|
28
|
-
import "./chunk-W5J3LTYS.js";
|
|
29
|
-
import "./chunk-MHWYRNGA.js";
|
|
30
|
-
import "./chunk-JHLF2ZC2.js";
|
|
31
|
-
import "./chunk-WJLRU5OF.js";
|
|
32
|
-
import "./chunk-HBNB5TRH.js";
|
|
33
|
-
import "./chunk-PF4DSFDR.js";
|
|
34
|
-
import "./chunk-4OLM3KSB.js";
|
|
35
|
-
import "./chunk-PWYMHUXY.js";
|
|
36
|
-
import "./chunk-TLT4YIG3.js";
|
|
37
|
-
import "./chunk-5R63Q5KH.js";
|
|
38
|
-
import {
|
|
39
|
-
select_default
|
|
40
|
-
} from "./chunk-I6Y4O3RR.js";
|
|
41
|
-
import "./chunk-Q5RDQNIT.js";
|
|
42
|
-
import {
|
|
43
|
-
__toESM
|
|
44
|
-
} from "./chunk-HS5PO5ZQ.js";
|
|
45
|
-
|
|
46
|
-
// termsetting/handlers/test/NumericHandler.unit.spec.ts
|
|
47
|
-
var import_tape = __toESM(require_tape(), 1);
|
|
48
|
-
async function getNumericHandler(_opts = {}) {
|
|
49
|
-
const term = JSON.parse(JSON.stringify(termjson.agedx));
|
|
50
|
-
if (term.bins.default.type == "regular-bin") term.bins.default.bin_size = 500;
|
|
51
|
-
const rawTw = {
|
|
52
|
-
term,
|
|
53
|
-
q: {
|
|
54
|
-
mode: "discrete",
|
|
55
|
-
//type: 'regular-bin',
|
|
56
|
-
...term.bins.default
|
|
57
|
-
}
|
|
58
|
-
};
|
|
59
|
-
const tw = await TwRouter.initRaw(rawTw);
|
|
60
|
-
const handler = new NumericHandler({
|
|
61
|
-
termsetting: {
|
|
62
|
-
tw,
|
|
63
|
-
term: rawTw.term,
|
|
64
|
-
q: rawTw.q,
|
|
65
|
-
opts: {
|
|
66
|
-
numericEditMenuVersion: ["continuous", "discrete", "binary", "spline"],
|
|
67
|
-
// _opts will any matching override previous opts key-values
|
|
68
|
-
..._opts
|
|
69
|
-
},
|
|
70
|
-
api: {
|
|
71
|
-
async runCallback() {
|
|
72
|
-
const self = handler.termsetting;
|
|
73
|
-
const q = handler.editHandler.q;
|
|
74
|
-
self.tw = await TwRouter.initRaw({ term: self.term, q }, self.opts);
|
|
75
|
-
}
|
|
76
|
-
},
|
|
77
|
-
dom: {
|
|
78
|
-
tip: {
|
|
79
|
-
hide() {
|
|
80
|
-
}
|
|
81
|
-
}
|
|
82
|
-
},
|
|
83
|
-
vocabApi: {
|
|
84
|
-
getViolinBox() {
|
|
85
|
-
return agedx;
|
|
86
|
-
},
|
|
87
|
-
getPercentile() {
|
|
88
|
-
return {
|
|
89
|
-
values: [0.03537315665, 3.13072460515, 8.164619357749999, 17.8726813385]
|
|
90
|
-
};
|
|
91
|
-
}
|
|
92
|
-
}
|
|
93
|
-
}
|
|
94
|
-
});
|
|
95
|
-
const holder = select_default("body").append("div").style("width", "fit-content").style("margin", "20px").style("padding", "5px").style("border", "1px solid #000");
|
|
96
|
-
return {
|
|
97
|
-
rawTw,
|
|
98
|
-
tw,
|
|
99
|
-
handler,
|
|
100
|
-
holder,
|
|
101
|
-
destroy: () => {
|
|
102
|
-
if (handler.editHandler && "destroy" in handler.editHandler) handler.editHandler.destroy();
|
|
103
|
-
if (typeof handler.destroy == "function") handler.destroy();
|
|
104
|
-
holder.remove();
|
|
105
|
-
}
|
|
106
|
-
};
|
|
107
|
-
}
|
|
108
|
-
(0, import_tape.default)("\n", (test) => {
|
|
109
|
-
test.comment("-***- NumericHandler.unit.spec -***-");
|
|
110
|
-
test.end();
|
|
111
|
-
});
|
|
112
|
-
(0, import_tape.default)("tabs data and pill status", async (test) => {
|
|
113
|
-
const { handler, destroy } = await getNumericHandler();
|
|
114
|
-
test.deepEqual(
|
|
115
|
-
handler.tabs.map((t) => t.label),
|
|
116
|
-
["Continuous", "Discrete", "Cubic spline", "Binary"],
|
|
117
|
-
"sets the expected tab data"
|
|
118
|
-
);
|
|
119
|
-
test.deepEqual(handler.getPillStatus(), { text: "bin size=500" }, `should give the expected pill status`);
|
|
120
|
-
if (test._ok) destroy();
|
|
121
|
-
test.end();
|
|
122
|
-
});
|
|
123
|
-
(0, import_tape.default)("gene-expression pill status includes the sample-type label", (test) => {
|
|
124
|
-
const handler = Object.create(NumericHandler.prototype);
|
|
125
|
-
handler.termsetting = {
|
|
126
|
-
tw: {
|
|
127
|
-
term: { type: "geneExpression", sampleTypeLabel: "Relapses" },
|
|
128
|
-
getStatus: () => ({ text: "continuous" })
|
|
129
|
-
}
|
|
130
|
-
};
|
|
131
|
-
test.deepEqual(
|
|
132
|
-
handler.getPillStatus(),
|
|
133
|
-
{ text: "continuous (Relapses)" },
|
|
134
|
-
"should append the gene-expression sample-type label"
|
|
135
|
-
);
|
|
136
|
-
test.end();
|
|
137
|
-
});
|
|
138
|
-
(0, import_tape.default)("editHandler", async (test) => {
|
|
139
|
-
const { handler, destroy } = await getNumericHandler();
|
|
140
|
-
handler.density_data = { min: 0, max: 100 };
|
|
141
|
-
await handler.setEditHandler(handler.tabs[0]);
|
|
142
|
-
test.equal(
|
|
143
|
-
handler.editHandler.constructor.name,
|
|
144
|
-
"NumContEditor",
|
|
145
|
-
`sets the expected editHandler for mode='continuous'`
|
|
146
|
-
);
|
|
147
|
-
await handler.setEditHandler(handler.tabs[1]);
|
|
148
|
-
test.equal(
|
|
149
|
-
handler.editHandler.constructor.name,
|
|
150
|
-
"NumDiscreteEditor",
|
|
151
|
-
`sets the expected editHandler for mode='discrete'`
|
|
152
|
-
);
|
|
153
|
-
await handler.setEditHandler(handler.tabs[2]);
|
|
154
|
-
test.equal(handler.editHandler.constructor.name, "NumSplineEditor", `sets the expected editHandler for mode='binary'`);
|
|
155
|
-
await handler.setEditHandler(handler.tabs[3]);
|
|
156
|
-
test.equal(handler.editHandler.constructor.name, "NumBinaryEditor", `sets the expected editHandler for mode='spline'`);
|
|
157
|
-
if (test._ok) destroy();
|
|
158
|
-
test.end();
|
|
159
|
-
});
|
|
160
|
-
(0, import_tape.default)("showEditMenu, multiple modes", async (test) => {
|
|
161
|
-
const { handler, holder, destroy } = await getNumericHandler();
|
|
162
|
-
await handler.showEditMenu(holder);
|
|
163
|
-
await sleep(0);
|
|
164
|
-
test.equal(handler.editHandler.dom.density_div.selectAll("svg").size(), 1, `should render a density plot svg`);
|
|
165
|
-
test.equal(
|
|
166
|
-
handler.dom.topBar?.selectAll(".sj-toggle-button").size(),
|
|
167
|
-
4,
|
|
168
|
-
`should render 4 tabs, one toggle button for each mode`
|
|
169
|
-
);
|
|
170
|
-
test.equal(handler.dom.btnDiv?.selectAll("button").size(), 2, `should render an apply and reset button`);
|
|
171
|
-
test.deepEqual(handler.getPillStatus(), { text: "bin size=500" }, "should have the expected initial pill status");
|
|
172
|
-
const tabBtns = handler.dom.topBar.node().querySelectorAll("button");
|
|
173
|
-
tabBtns[2].click();
|
|
174
|
-
await sleep(10);
|
|
175
|
-
handler.dom.btnDiv.select("button").node().click();
|
|
176
|
-
await sleep(10);
|
|
177
|
-
test.deepEqual(
|
|
178
|
-
handler.getPillStatus(),
|
|
179
|
-
{ text: "cubic spline" },
|
|
180
|
-
"should have a different pill status after switching q.modes"
|
|
181
|
-
);
|
|
182
|
-
if (test._ok) destroy();
|
|
183
|
-
test.end();
|
|
184
|
-
});
|
|
185
|
-
(0, import_tape.default)("showEditMenu, single mode", async (test) => {
|
|
186
|
-
const { handler, holder, destroy } = await getNumericHandler({ numericEditMenuVersion: ["binary"] });
|
|
187
|
-
await handler.showEditMenu(holder);
|
|
188
|
-
await sleep(0);
|
|
189
|
-
test.equal(handler.editHandler.dom.density_div.selectAll("svg").size(), 1, `should render a density plot svg`);
|
|
190
|
-
test.equal(
|
|
191
|
-
handler.dom.topBar?.selectAll(".sj-toggle-button").size(),
|
|
192
|
-
void 0,
|
|
193
|
-
`should not render mode toggle buttons`
|
|
194
|
-
);
|
|
195
|
-
test.equal(handler.dom.btnDiv?.selectAll("button").size(), 2, `should render an apply and reset button`);
|
|
196
|
-
if (test._ok) destroy();
|
|
197
|
-
test.end();
|
|
198
|
-
});
|
|
199
|
-
(0, import_tape.default)("apply and reset", async (test) => {
|
|
200
|
-
test.timeoutAfter(50);
|
|
201
|
-
test.plan(2);
|
|
202
|
-
const { handler, holder, destroy } = await getNumericHandler();
|
|
203
|
-
handler.editHandler = {
|
|
204
|
-
getEditedQ() {
|
|
205
|
-
test.pass("should trigger editHandler.getEditedQ() from applyEdits()");
|
|
206
|
-
return { mode: "discrete", type: "regular-bin" };
|
|
207
|
-
},
|
|
208
|
-
undoEdits() {
|
|
209
|
-
test.pass("should trigger editHandler.undoEdits() from undoEdits()");
|
|
210
|
-
}
|
|
211
|
-
};
|
|
212
|
-
try {
|
|
213
|
-
await handler.renderButtons(holder);
|
|
214
|
-
const btns = holder.node()?.querySelectorAll("button");
|
|
215
|
-
if (btns?.length) {
|
|
216
|
-
btns[0].click();
|
|
217
|
-
btns[1].click();
|
|
218
|
-
}
|
|
219
|
-
if (test._ok) destroy();
|
|
220
|
-
test.end();
|
|
221
|
-
} catch (e) {
|
|
222
|
-
test.fail("should trigger editHandler.getEditedQ and .undoEdits(): " + e);
|
|
223
|
-
}
|
|
224
|
-
});
|
|
225
|
-
//# sourceMappingURL=NumericHandler.unit.spec-4PADL4KZ.js.map
|