@sjcrh/proteinpaint-client 2.220.0 → 2.222.0

package/dist/chunk-C6PMNLN4.js

@@ -0,0 +1,54 @@
+import {
+  addGeneSearchbox,
+  getSCGEunit,
+  getSampleAssayInfo
+} from "./chunk-4ASBDE27.js";
+import {
+  Menu
+} from "./chunk-CNFTQSNE.js";
+import {
+  SINGLECELL_GENE_EXPRESSION
+} from "./chunk-WJLRU5OF.js";
+
+// termdb/handlers/singleCellGeneExpression.ts
+var SearchHandler = class {
+  async init(opts) {
+    this.validateOpts(opts);
+    this.callback = opts.callback;
+    this.app = opts.app;
+    const sample = opts.usecase?.specialCase?.config?.sample;
+    const { genes: geneList } = await getSampleAssayInfo(this.app.vocabApi, sample);
+    const holder = opts.holder.append("div").style("padding", "10px 0px");
+    const geneSearch = addGeneSearchbox({
+      tip: new Menu({ padding: "0px" }),
+      genome: opts.genomeObj,
+      geneList,
+      row: holder,
+      searchOnly: "gene",
+      callback: () => this.selectGene(geneSearch.geneSymbol, sample)
+    });
+  }
+  /**TODO: scge tw handler will validate that a sample is included. Need to resolve issue
+   * with sample info not included.*/
+  async selectGene(gene, sample) {
+    if (!gene) throw new Error("No gene selected");
+    const unit = getSCGEunit(this.app.vocabApi);
+    const name = `${gene} ${unit}`;
+    this.callback({ gene, name, type: SINGLECELL_GENE_EXPRESSION, sample });
+  }
+  validateOpts(opts) {
+    if (opts.callback == null) throw new Error("callback is required");
+    if (opts.app == null) throw new Error("app is required");
+    if (opts.holder == null) throw new Error("holder is required");
+    if (opts.genomeObj == null) throw new Error("genomeObj is required");
+    if (opts.usecase == null) throw new Error("usecase is required");
+    if (!opts.usecase?.specialCase?.config?.sample) {
+      throw new Error("usecase.specialCase.config.sample is required for singleCellGeneExpression handler");
+    }
+  }
+};
+
+export {
+  SearchHandler
+};
+//# sourceMappingURL=chunk-C6PMNLN4.js.map

package/dist/chunk-CSYXTB7F.js

@@ -0,0 +1,418 @@
+import {
+  addBrushes,
+  addNewBrush
+} from "./chunk-OZUF7O2S.js";
+import {
+  escapeHtml,
+  niceNumLabels,
+  violinRenderer
+} from "./chunk-4ASBDE27.js";
+import {
+  convertUnits,
+  getValueConversionFactor
+} from "./chunk-W5J3LTYS.js";
+import {
+  NumericRangeInput
+} from "./chunk-PWYMHUXY.js";
+import {
+  roundValueAuto
+} from "./chunk-TLT4YIG3.js";
+import {
+  select_default
+} from "./chunk-I6Y4O3RR.js";
+
+// filter/tvs.numeric.js
+var handler = {
+  type: "numeric",
+  term_name_gen,
+  get_pill_label,
+  getSelectRemovePos,
+  fillMenu,
+  setTvsDefaults
+};
+function term_name_gen(d) {
+  const name = d.term.name;
+  return name.length < 26 ? escapeHtml(name) : '<label title="' + escapeHtml(name) + '">' + escapeHtml(name.substring(0, 24)) + "...</label>";
+}
+function get_pill_label(tvs) {
+  if (tvs.ranges.length == 1) {
+    const v = tvs.ranges[0];
+    if ("value" in v) {
+      if (v.label) return { txt: escapeHtml(v.label) };
+      if (tvs.term.values && tvs.term.values[v.value] && tvs.term.values[v.value].label)
+        return { txt: escapeHtml(tvs.term.values[v.value].label) };
+      console.error(`key "${v.value}" not found in values{} of ${tvs.term.name}`);
+      return { txt: escapeHtml(v.value) };
+    }
+    return { txt: format_val_text(v, tvs.term) + mafDepthText(tvs) };
+  }
+  return { txt: tvs.ranges.length + " intervals" + mafDepthText(tvs) };
+}
+function mafDepthText(tvs) {
+  if (tvs.term.mafFilterMode != "maf") return "";
+  if (!Number.isFinite(tvs.minAllelicDepth) || tvs.minAllelicDepth < 1) return "";
+  return `, Total depth &ge; ${tvs.minAllelicDepth}`;
+}
+function format_val_text(range, term) {
+  const x = '<span style="font-family:Times;font-style:italic;font-size:1em; vertical-align:top">x</span>';
+  if (range.startunbounded && range.stopunbounded) {
+    const inf = (sign = "") => `<span style='vertical-align: middle; font-size:1.1em; line-height: 0.9em'>${sign}\u221E</span>`;
+    const lt = `<span style='vertical-align: top; font-size: 0.9em'>&lt;</span>`;
+    return `<span>${inf("\uFE63")} ${lt} ${x} ${lt} ${inf("\uFE62")}</span>`;
+  }
+  const vc = term.valueConversion;
+  if (range.startunbounded)
+    return `${x} ${range.stopinclusive ? "&le;" : "&lt;"} ${vc ? convertUnits(range.stop, vc.fromUnit, vc.toUnit, vc.scaleFactor) : range.stop}`;
+  if (range.stopunbounded)
+    return `${x} ${range.startinclusive ? "&ge;" : "&gt;"} ${vc ? convertUnits(range.start, vc.fromUnit, vc.toUnit, vc.scaleFactor) : range.start}`;
+  let startName, stopName;
+  if (vc) {
+    startName = convertUnits(range.start, vc.fromUnit, vc.toUnit, vc.scaleFactor);
+    stopName = convertUnits(range.stop, vc.fromUnit, vc.toUnit, vc.scaleFactor);
+  } else {
+    ;
+    [startName, stopName] = niceNumLabels([range.start, range.stop]);
+  }
+  return `${startName} 
+			${range.startinclusive ? "&le;" : "&lt;"}
+			${x}
+			${range.stopinclusive ? "&le;" : "&lt;"}
+			${stopName}`;
+}
+function getSelectRemovePos(j, tvs) {
+  return j - tvs.ranges.slice(0, j).filter((a) => a.start || a.stop).length;
+}
+async function fillMenu(self, div, tvs) {
+  const num_parent_div = div.append("div");
+  self.num_obj = {};
+  self.num_obj.num_div = num_parent_div.append("div").attr("class", "num_div").style("padding", "5px").style("color", "#000");
+  self.num_obj.plot_size = {
+    width: 450,
+    height: 100,
+    xpad: 10,
+    ypad: 20,
+    radius: 8
+  };
+  if (typeof self.opts.vocabApi.getViolinBox == "function") {
+    try {
+      const data = await self.opts.vocabApi.getViolinBox(
+        {
+          plotType: "violin",
+          tw: { term: tvs.term, q: { mode: "continuous" } },
+          // must supply this filter and override state filter in function, so the density plot will not be limited to range defined by current numeric tvs but will show whole range
+          filter: self.filter,
+          svgw: self.num_obj.plot_size.width,
+          radius: self.num_obj.plot_size.radius
+        },
+        self.opts.getCategoriesArguments
+      );
+      if (data.error) throw data.error;
+      if (data.max === null && data.min === null) {
+        throw `No data available under current filter conditions.`;
+      }
+      self.num_obj.density_data = data;
+    } catch (err) {
+      throw err;
+    }
+  } else {
+    self.num_obj.density_data = {};
+  }
+  if (self.num_obj.density_data.error) throw self.num_obj.density_data.error;
+  if (!self.num_obj.density_data.charts?.[""]?.plots?.[0]?.density?.bins) {
+    addRangeTableNoDensity(self, tvs);
+    return;
+  }
+  self.vr = new violinRenderer({
+    holder: self.num_obj.num_div,
+    rd: self.num_obj.density_data,
+    width: self.num_obj.plot_size.width,
+    radius: self.num_obj.plot_size.radius,
+    height: self.num_obj.plot_size.height,
+    // axis ticks are labeled in the term's user-facing unit, e.g. years and not days
+    scaleFactor: getValueConversionFactor(tvs.term)
+  });
+  self.vr.render();
+  self.num_obj.svg = self.vr.svg;
+  self.num_obj.range_table = self.num_obj.num_div.append("table").style("table-layout", "fixed").style("border-collapse", "collapse");
+  const ranges = [];
+  for (const [index, range] of tvs.ranges.entries()) {
+    range.index = index;
+    ranges.push(range);
+  }
+  self.num_obj.brush_g = self.vr.brushG.attr("class", "brush_g");
+  self.num_obj.xscale = self.vr.axisScale;
+  self.num_obj.ranges = ranges;
+  self.num_obj.brushes = [];
+  addBrushes(self);
+  addRangeTable(self);
+  if (!ranges.length) {
+    const callback = () => addRangeTable(self);
+    addNewBrush(self, "center", callback);
+  }
+  self.num_obj.brushes.forEach((brush) => brush.init());
+  await showCheckList_numeric(self, tvs, div);
+}
+function setTvsDefaults(tvs) {
+  if (!tvs.ranges) tvs.ranges = [];
+}
+function addRangeTableNoDensity(self, tvs) {
+  const termrange = tvs.term.range || {};
+  const range = tvs.ranges && tvs.ranges[0] ? tvs.ranges[0] : termrange;
+  const num_div = self.num_obj.num_div;
+  num_div.selectAll("*").remove();
+  const brush = {};
+  const holder = num_div.append("div").style("padding-left", "5px");
+  const mafFilterMode = tvs.term.mafFilterMode;
+  if (mafFilterMode == "maf" && tvs.term.child_ids?.length > 1) {
+    const ids = tvs.term.child_ids;
+    const list = ids.slice(0, -1).join(", ") + " and " + ids[ids.length - 1];
+    holder.append("div").style("margin-bottom", "8px").style("font-size", ".9em").style("opacity", 0.7).text(`MAF is computed by summing allelic depths from ${list}`);
+  }
+  const rangeRow = holder.append("div").style("display", "flex").style("align-items", "center").style("column-gap", "5px");
+  const rangeLabel = rangeRow.append("span");
+  brush.equation_div = rangeRow.append("div");
+  brush.rangeInput = new NumericRangeInput(brush.equation_div, range, () => {
+  }, {
+    width: "125px",
+    scaleFactor: getValueConversionFactor(tvs.term),
+    // without a density plot, the term's declared bounds are the only check of a typed range
+    min: tvs.term.min,
+    max: tvs.term.max
+  });
+  if (mafFilterMode == "maf") {
+    rangeLabel.text("MAF Range (0-1)");
+    const depthRow = holder.append("div").style("display", "flex").style("align-items", "center").style("column-gap", "5px").style("margin-top", "5px");
+    depthRow.append("span").text("Minimum Total Depth");
+    brush.depthInput = depthRow.append("input").attr("type", "number").attr("min", 1).attr("step", 1).style("width", "125px").property("value", Number.isFinite(tvs.minAllelicDepth) ? tvs.minAllelicDepth : "");
+    brush.apply_btn = addApplyButton(holder.append("div").style("margin-top", "10px"));
+  } else if (mafFilterMode == "value") {
+    rangeLabel.text("Range");
+    brush.apply_btn = addApplyButton(rangeRow);
+  } else if (mafFilterMode == "totalDepth" || mafFilterMode == "altDepth") {
+    rangeLabel.text(mafFilterMode == "totalDepth" ? "Total Depth" : "Alt Allele Depth");
+    brush.apply_btn = addApplyButton(rangeRow);
+  } else {
+    rangeLabel.text("Range");
+    brush.apply_btn = addApplyButton(rangeRow);
+  }
+  if (mafFilterMode) brush.rangeInput.getInput().node().focus();
+  function addApplyButton(holder2) {
+    return holder2.append("button").text("Apply").on("click", clickApply);
+  }
+  function clickApply() {
+    const r = brush.rangeInput.getRange();
+    if (!Number.isFinite(r.start) && !Number.isFinite(r.stop)) {
+      window.alert("Invalid range.");
+      return;
+    }
+    const new_tvs = { term: tvs.term, ranges: [r] };
+    if (brush.depthInput) {
+      const str = brush.depthInput.property("value").trim();
+      if (str) {
+        const minAllelicDepth = Number(str);
+        if (!Number.isFinite(minAllelicDepth)) {
+          window.alert("Minimum allelic depth must be a numeric value.");
+          return;
+        }
+        new_tvs.minAllelicDepth = Math.max(minAllelicDepth, 1);
+      }
+    }
+    self.dom.tip.hide();
+    self.opts.callback(new_tvs);
+  }
+}
+function addRangeTable(self) {
+  const brushes = self.num_obj.brushes;
+  const range_divs = self.num_obj.range_table.selectAll(".range_div").data(brushes);
+  range_divs.exit().each(function() {
+    select_default(this).style("opacity", 1).transition().duration(100).style("opacity", 0).remove();
+  });
+  range_divs.enter().append("tr").attr("class", "range_div").style("white-space", "nowrap").style("padding", "2px").transition().duration(200).each(function(brush, i) {
+    enterRange(self, this, brush, i);
+  });
+}
+function enterRange(self, tr, brush, i) {
+  if (!brush.range_tr) brush.range_tr = select_default(tr);
+  const range_tr = brush.range_tr;
+  const xscale = self.num_obj.xscale;
+  range_tr.append("td").style("margin-left", "10px").style("padding", "3px 10px").style("font-size", ".9em").text("Range " + (i + 1) + ": ");
+  brush.equation_td = range_tr.append("td").style("width", "150px");
+  brush.rangeInput = new NumericRangeInput(brush.equation_td, brush.range, apply, {
+    scaleFactor: getValueConversionFactor(self.tvs.term)
+  });
+  makeRangeButtons(self, brush);
+  if (i == 0) {
+    self.num_obj.range_table.append("tr").attr("class", "note_tr").append("td").attr("colspan", "3").append("div").style("font-size", ".8em").style("margin-left", "20px").style("font-style", "italic").style("color", "#888").html("Option 1: Drag the rectangle to select a range. Overlapping ranges will be merged.");
+  }
+  if (i == 0) {
+    self.num_obj.range_table.append("tr").attr("class", "note_tr").append("td").attr("colspan", "3").append("div").style("font-size", ".8em").style("margin-left", "20px").style("font-style", "italic").style("color", "#888").html(
+      `Option 2: Type in values to select a range.${self.tvs.term.valueConversion ? ` Values are in the unit of ${self.tvs.term.valueConversion.toUnit}.` : ""}`
+    );
+  }
+  function apply(new_range) {
+    const minvalue = self.num_obj.density_data.min;
+    const maxvalue = self.num_obj.density_data.max;
+    validateRangeInData(self, new_range);
+    brush.range = new_range;
+    const start = new_range.value != void 0 ? new_range.value : new_range.start != void 0 ? new_range.start : minvalue;
+    const stop = new_range.value != void 0 ? new_range.value : new_range.stop != void 0 ? new_range.stop : maxvalue;
+    const clamp = (v) => Math.min(Math.max(v, minvalue), maxvalue);
+    brush.elem.call(brush.d3brush).call(brush.d3brush.move, [clamp(start), clamp(stop)].map(xscale));
+  }
+  function makeRangeButtons(self2, brush2) {
+    const buttons_td = brush2.range_tr.append("td");
+    const range = brush2.range;
+    brush2.apply_btn = buttons_td.append("button").style("margin-left", "10px").text("Apply").attr("data-testid", "sjpp-tvsnumeric-range-apply").on("click", async () => {
+      try {
+        const new_range = brush2.rangeInput.parseRange();
+        const new_tvs = JSON.parse(JSON.stringify(self2.tvs));
+        delete new_tvs.groupset_label;
+        if (self2.num_obj.ranges.length > 1) new_tvs.ranges = mergeOverlapRanges(self2, new_range);
+        else new_tvs.ranges[range.index] = new_range;
+        validateNumericTvs(new_tvs);
+        self2.dom.tip.hide();
+        self2.opts.callback(new_tvs);
+      } catch (ex) {
+        alert(ex);
+      }
+    });
+    buttons_td.append("button").attr("class", "sja_filter_tag_btn sjpp_delete_btn").style("display", self2.num_obj.ranges.length > 1 ? "inline-block" : "none").style("margin-left", "10px").style("text-transform", "uppercase").text("Delete").on("click", async () => {
+      const new_tvs = JSON.parse(JSON.stringify(self2.tvs));
+      new_tvs.ranges.splice(range.index, 1);
+      self2.num_obj.ranges.pop();
+      self2.num_obj.brushes.pop();
+      self2.num_obj.num_div.select(".note_tr").remove();
+      addBrushes(self2);
+      addRangeTable(self2);
+      if (new_tvs.ranges.length) self2.opts.callback(new_tvs);
+    });
+  }
+}
+function mergeOverlapRanges(self, new_range) {
+  let ranges = JSON.parse(JSON.stringify(self.tvs.ranges));
+  let merged_flag = false;
+  for (const [i, range] of ranges.entries()) {
+    if (!range.value && new_range.index != i) {
+      if (new_range.start <= range.start && new_range.stop >= range.stop) {
+        range.start = new_range.start;
+        range.stop = new_range.stop;
+        merged_flag = true;
+      } else if (new_range.start <= range.stop && new_range.stop >= range.stop) {
+        range.stop = new_range.stop;
+        merged_flag = true;
+      } else if (new_range.stop >= range.start && new_range.start <= range.start) {
+        range.start = new_range.start;
+        merged_flag = true;
+      } else if (new_range.start >= range.start && new_range.stop <= range.stop) {
+        merged_flag = true;
+      } else if (new_range.startunbounded) {
+        if (new_range.stop > range.stop) {
+          range.stop = new_range.stop;
+        }
+        delete range.start;
+        range.startunbounded = true;
+        merged_flag = true;
+      } else if (new_range.stopunbounded) {
+        if (new_range.start < range.start) {
+          range.start = new_range.start;
+        }
+        delete range.stop;
+        range.stopunbounded = true;
+        merged_flag = true;
+      }
+    }
+  }
+  if (merged_flag) {
+    if (new_range.index <= ranges.length - 1) ranges.splice(new_range.index, 1);
+  } else {
+    ranges = JSON.parse(JSON.stringify(self.tvs.ranges));
+    if (new_range.index) ranges[new_range.index] = new_range;
+    else ranges.push(new_range);
+  }
+  return ranges;
+}
+async function showCheckList_numeric(self, tvs, div) {
+  if (!tvs.term.values) {
+    return;
+  }
+  const values = await self.opts.vocabApi.getNumericUncomputableCategories(tvs.term, self.filter);
+  const unannotated_cats = [];
+  const lst = values?.lst || values;
+  for (const cat of lst) {
+    const key = "key" in cat ? cat.key : cat.value;
+    if (!("key" in cat)) cat.key = key;
+    if (!("value" in cat)) cat.value = key;
+    if (key in tvs.term.values) {
+      cat.label = tvs.term.values[key].label;
+      unannotated_cats.push(cat);
+    }
+  }
+  const sortedVals = unannotated_cats.sort((a, b) => {
+    return b.samplecount - a.samplecount;
+  });
+  const unanno_div = div.append("div").style("padding", "5px").style("color", "#000");
+  const callback = (indexes) => {
+    try {
+      const new_tvs = JSON.parse(JSON.stringify(tvs));
+      delete new_tvs.groupset_label;
+      new_tvs.ranges = [
+        ...new_tvs.ranges.filter((r) => !("value" in r)),
+        ...indexes.map((i) => ({ value: sortedVals[i].value, label: sortedVals[i].label }))
+      ];
+      self.dom.tip.hide();
+      if (new_tvs.ranges.length == 0) throw "select at least one range or category";
+      if (JSON.parse(JSON.stringify(tvs) != new_tvs)) {
+        try {
+          validateNumericTvs(new_tvs);
+        } catch (e) {
+          window.alert(e);
+          return;
+        }
+        self.opts.callback(new_tvs);
+      }
+    } catch (e) {
+      window.alert(e);
+    }
+  };
+  const values_table = self.makeValueTable(unanno_div, tvs, sortedVals, callback).node();
+}
+function validateRangeInData(self, range) {
+  if (range.value != void 0) return;
+  const { min, max } = self.num_obj.density_data;
+  if (!Number.isFinite(min) || !Number.isFinite(max)) return;
+  const aboveMax = !range.startunbounded && (range.start > max || range.start == max && !range.startinclusive);
+  const belowMin = !range.stopunbounded && (range.stop < min || range.stop == min && !range.stopinclusive);
+  if (!aboveMax && !belowMin) return;
+  const sf = getValueConversionFactor(self.tvs.term);
+  const [minLabel, maxLabel] = [min, max].map((v) => roundValueAuto(v * sf));
+  throw `The range is outside of the data, which ranges from ${minLabel} to ${maxLabel}`;
+}
+function validateNumericTvs(tvs) {
+  if (!tvs.term) throw "tvs.term is not defined";
+  if (!tvs.ranges) throw `.values[] missing for a term ${tvs.term.name}`;
+  if (!Array.isArray(tvs.ranges)) throw `.values[] is not an array for a term ${tvs.term.name}`;
+  if (!tvs.ranges.length) throw `no categories selected for ${tvs.term.name}`;
+  for (const range of tvs.ranges) {
+    if (range.value != void 0) {
+      if (!range.label) throw `.label missing for special category for a term ${tvs.term.name}`;
+    } else {
+      if (range.startunbounded) {
+        if (range.stopunbounded) throw `both start & stop are unbounded for a term ${tvs.term.name}`;
+        if (!Number.isFinite(range.stop)) throw `.stop undefined when start is unbounded for a term ${tvs.term.name}`;
+      } else if (range.stopunbounded) {
+        if (!Number.isFinite(range.start)) throw `.start undefined when stop is unbounded for a term ${tvs.term.name}`;
+      } else {
+        if (!Number.isFinite(range.start))
+          throw `.start undefined when start is not unbounded for a term ${tvs.term.name}`;
+        if (!Number.isFinite(range.stop)) throw `.stop undefined when stop is not unbounded for a term ${tvs.term.name}`;
+        if (range.start >= range.stop) throw `.start is not lower than stop for a term ${tvs.term.name}`;
+      }
+    }
+  }
+}
+
+export {
+  handler,
+  format_val_text
+};
+//# sourceMappingURL=chunk-CSYXTB7F.js.map

package/dist/chunk-CSYXTB7F.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../filter/tvs.numeric.js"],
+  "sourcesContent": ["import { escapeHtml } from '#dom'\nimport { select } from 'd3-selection'\nimport { scaleLinear } from 'd3'\nimport { addBrushes, addNewBrush } from './tvs.density'\nimport { NumericRangeInput } from '#dom/numericRangeInput'\nimport { convertUnits, getValueConversionFactor } from '#shared/helpers.js'\nimport { violinRenderer } from '../dom/violinRenderer'\nimport { niceNumLabels } from '../dom/niceNumLabels.ts'\nimport { roundValueAuto } from '#shared/roundValue.js'\n\n/*\n********************** EXPORTED\nhandler:\n\t// internal functions as part of handler\n\tterm_name_gen()\n\tget_pill_label()\n\t\tformat_val_text()\n\t\tmafDepthText()\n\tgetSelectRemovePos()\n\tfillMenu()\n\tsetTvsDefaults()\n\n********************** INTERNAL\naddRangeTableNoDensity() // for terms without desnity table, show brushes but without density_plot on blank svg\naddRangeTable() // add table for existing ranges or start with empty_range with brush in center \nenterRange() // add row for each range, for existing readonly and for new or edit, show inputs\nmakeRangeButtons() // add buttons for  Apply / DELETE \nmergeOverlapRanges() // when Apply is pressed, check if ranges are overlapping, if so, merge them\nshowCheckList_numeric() // so checklist of uncomputable values\nvalidateRangeInData() // reject a typed range that does not overlap the data range of the density plot\nvalidateNumericTvs() // validate tvs before sending it to callback\n\n*/\n\nexport const handler = {\n\ttype: 'numeric',\n\tterm_name_gen,\n\tget_pill_label,\n\tgetSelectRemovePos,\n\tfillMenu,\n\tsetTvsDefaults\n}\n\nfunction term_name_gen(d) {\n\tconst name = d.term.name\n\treturn name.length < 26\n\t\t? escapeHtml(name)\n\t\t: '<label title=\"' + escapeHtml(name) + '\">' + escapeHtml(name.substring(0, 24)) + '...' + '</label>'\n}\n\nfunction get_pill_label(tvs) {\n\tif (tvs.ranges.length == 1) {\n\t\tconst v = tvs.ranges[0]\n\t\tif ('value' in v) {\n\t\t\t// category\n\t\t\tif (v.label) return { txt: escapeHtml(v.label) }\n\t\t\tif (tvs.term.values && tvs.term.values[v.value] && tvs.term.values[v.value].label)\n\t\t\t\treturn { txt: escapeHtml(tvs.term.values[v.value].label) }\n\t\t\tconsole.error(`key \"${v.value}\" not found in values{} of ${tvs.term.name}`)\n\t\t\treturn { txt: escapeHtml(v.value) }\n\t\t}\n\t\t// numeric range\n\t\treturn { txt: format_val_text(v, tvs.term) + mafDepthText(tvs) }\n\t}\n\t// multiple\n\treturn { txt: tvs.ranges.length + ' intervals' + mafDepthText(tvs) }\n}\n\n/* a maf-mode tvs may also gate samples on total read depth; the range text alone does not show it.\nreturns '' when no cutoff is set, and for any other tvs: 'totalDepth'/'altDepth' filter on depth with\ntheir own range, and minAllelicDepth has no effect on a 'value' term */\nfunction mafDepthText(tvs) {\n\tif (tvs.term.mafFilterMode != 'maf') return ''\n\tif (!Number.isFinite(tvs.minAllelicDepth) || tvs.minAllelicDepth < 1) return ''\n\treturn `, Total depth &ge; ${tvs.minAllelicDepth}`\n}\n\nexport function format_val_text(range, term) {\n\tconst x = '<span style=\"font-family:Times;font-style:italic;font-size:1em; vertical-align:top\">x</span>'\n\tif (range.startunbounded && range.stopunbounded) {\n\t\tconst inf = (sign = '') =>\n\t\t\t`<span style='vertical-align: middle; font-size:1.1em; line-height: 0.9em'>${sign}\u221E</span>`\n\t\tconst lt = `<span style='vertical-align: top; font-size: 0.9em'>&lt;</span>`\n\t\treturn `<span>${inf('\uFE63')} ${lt} ${x} ${lt} ${inf('\uFE62')}</span>`\n\t}\n\n\t/* logic about value converting:\n\tif term.valueConversion is present, will convert e.g. from day to years. this takes higher priority\n\telse, if range is one-sided, return as is\n\telse, apply nice method to adjust digits. this requires a start-stop range\n\t*/\n\n\tconst vc = term.valueConversion\n\n\tif (range.startunbounded)\n\t\treturn `${x} ${range.stopinclusive ? '&le;' : '&lt;'} ${\n\t\t\tvc ? convertUnits(range.stop, vc.fromUnit, vc.toUnit, vc.scaleFactor) : range.stop\n\t\t}`\n\n\tif (range.stopunbounded)\n\t\treturn `${x} ${range.startinclusive ? '&ge;' : '&gt;'} ${\n\t\t\tvc ? convertUnits(range.start, vc.fromUnit, vc.toUnit, vc.scaleFactor) : range.start\n\t\t}`\n\n\t// range is not unbounded and can apply nice method if there's no vc\n\n\tlet startName, stopName\n\tif (vc) {\n\t\tstartName = convertUnits(range.start, vc.fromUnit, vc.toUnit, vc.scaleFactor)\n\t\tstopName = convertUnits(range.stop, vc.fromUnit, vc.toUnit, vc.scaleFactor)\n\t} else {\n\t\t//Rms excessive number of decimals\n\t\t;[startName, stopName] = niceNumLabels([range.start, range.stop])\n\t}\n\n\treturn `${startName} \n\t\t\t${range.startinclusive ? '&le;' : '&lt;'}\n\t\t\t${x}\n\t\t\t${range.stopinclusive ? '&le;' : '&lt;'}\n\t\t\t${stopName}`\n}\n\nfunction getSelectRemovePos(j, tvs) {\n\treturn j - tvs.ranges.slice(0, j).filter(a => a.start || a.stop).length\n}\n\nasync function fillMenu(self, div, tvs) {\n\t//numerical range div\n\tconst num_parent_div = div.append('div')\n\tself.num_obj = {}\n\n\tself.num_obj.num_div = num_parent_div\n\t\t.append('div')\n\t\t.attr('class', 'num_div')\n\t\t.style('padding', '5px')\n\t\t.style('color', '#000')\n\n\tself.num_obj.plot_size = {\n\t\twidth: 450,\n\t\theight: 100,\n\t\txpad: 10,\n\t\typad: 20,\n\t\tradius: 8\n\t}\n\n\tif (typeof self.opts.vocabApi.getViolinBox == 'function') {\n\t\ttry {\n\t\t\tconst data = await self.opts.vocabApi.getViolinBox(\n\t\t\t\t{\n\t\t\t\t\tplotType: 'violin',\n\t\t\t\t\ttw: { term: tvs.term, q: { mode: 'continuous' } },\n\t\t\t\t\t// must supply this filter and override state filter in function, so the density plot will not be limited to range defined by current numeric tvs but will show whole range\n\t\t\t\t\tfilter: self.filter,\n\t\t\t\t\tsvgw: self.num_obj.plot_size.width,\n\t\t\t\t\tradius: self.num_obj.plot_size.radius\n\t\t\t\t},\n\t\t\t\tself.opts.getCategoriesArguments\n\t\t\t)\n\t\t\tif (data.error) throw data.error\n\t\t\tif (data.max === null && data.min === null) {\n\t\t\t\tthrow `No data available under current filter conditions.`\n\t\t\t}\n\t\t\tself.num_obj.density_data = data\n\t\t} catch (err) {\n\t\t\tthrow err\n\t\t}\n\t} else {\n\t\t// frontend vocab lacks this method, return no density data so ui will not show the plot\n\t\t// if the method is added to front vocab, the method must check if sample data is available for the front vocab;\n\t\t// if no sample data then return no density.\n\t\t// such is the case for INFO terms used for variant filtering\n\t\tself.num_obj.density_data = {}\n\t}\n\n\tif (self.num_obj.density_data.error) throw self.num_obj.density_data.error\n\n\tif (!self.num_obj.density_data.charts?.['']?.plots?.[0]?.density?.bins) {\n\t\t// no density data for this term (e.g. bcf numeric info field in a custom filter)\n\t\taddRangeTableNoDensity(self, tvs)\n\t\treturn\n\t}\n\n\tself.vr = new violinRenderer({\n\t\tholder: self.num_obj.num_div,\n\t\trd: self.num_obj.density_data,\n\t\twidth: self.num_obj.plot_size.width,\n\t\tradius: self.num_obj.plot_size.radius,\n\t\theight: self.num_obj.plot_size.height,\n\t\t// axis ticks are labeled in the term's user-facing unit, e.g. years and not days\n\t\tscaleFactor: getValueConversionFactor(tvs.term)\n\t})\n\tself.vr.render()\n\tself.num_obj.svg = self.vr.svg\n\n\tself.num_obj.range_table = self.num_obj.num_div\n\t\t.append('table')\n\t\t.style('table-layout', 'fixed')\n\t\t.style('border-collapse', 'collapse')\n\n\tconst ranges = []\n\n\tfor (const [index, range] of tvs.ranges.entries()) {\n\t\trange.index = index\n\t\tranges.push(range)\n\t}\n\t// add brush_g for tvs brushes\n\tself.num_obj.brush_g = self.vr.brushG.attr('class', 'brush_g')\n\n\tself.num_obj.xscale = self.vr.axisScale\n\n\tself.num_obj.ranges = ranges\n\tself.num_obj.brushes = []\n\taddBrushes(self)\n\taddRangeTable(self)\n\t// const add_range_btn = self.num_obj.num_div\n\t// \t.append('div')\n\t// \t.style('width', '100px')\n\t// \t.attr('class', 'add_range_btn sja_menuoption')\n\t// \t.style('border-radius', '13px')\n\t// \t.style('padding', '7px 6px')\n\t// \t.style('margin', '5px')\n\t// \t.style('margin-left', '20px')\n\t// \t.style('text-align', 'center')\n\t// \t.style('font-size', '.8em')\n\t// \t.text('Add a Range')\n\t// \t.on('click', () => {\n\t// \t\tconst callback = () => addRangeTable(self)\n\t// \t\taddNewBrush(self, ranges.length ? 'end' : 'center', callback)\n\t// \t})\n\n\tif (!ranges.length) {\n\t\tconst callback = () => addRangeTable(self)\n\t\taddNewBrush(self, 'center', callback)\n\t}\n\n\tself.num_obj.brushes.forEach(brush => brush.init())\n\tawait showCheckList_numeric(self, tvs, div)\n}\n\nfunction setTvsDefaults(tvs) {\n\tif (!tvs.ranges) tvs.ranges = []\n}\n\nfunction addRangeTableNoDensity(self, tvs) {\n\tconst termrange = tvs.term.range || {}\n\tconst range = tvs.ranges && tvs.ranges[0] ? tvs.ranges[0] : termrange\n\tconst num_div = self.num_obj.num_div\n\tnum_div.selectAll('*').remove()\n\n\tconst brush = {}\n\tconst holder = num_div.append('div').style('padding-left', '5px')\n\n\t// a maf filter term carries its mode, which determines the metric filtered and the inputs shown.\n\t// undefined for any other numeric term\n\tconst mafFilterMode = tvs.term.mafFilterMode\n\tif (mafFilterMode == 'maf' && tvs.term.child_ids?.length > 1) {\n\t\t// the fraction sums allele counts across several FORMAT fields (e.g. WGS and WES assays); the\n\t\t// term name alone does not say so\n\t\tconst ids = tvs.term.child_ids\n\t\tconst list = ids.slice(0, -1).join(', ') + ' and ' + ids[ids.length - 1]\n\t\tholder\n\t\t\t.append('div')\n\t\t\t.style('margin-bottom', '8px')\n\t\t\t.style('font-size', '.9em')\n\t\t\t.style('opacity', 0.7)\n\t\t\t.text(`MAF is computed by summing allelic depths from ${list}`)\n\t}\n\n\tconst rangeRow = holder\n\t\t.append('div')\n\t\t.style('display', 'flex')\n\t\t.style('align-items', 'center')\n\t\t.style('column-gap', '5px')\n\tconst rangeLabel = rangeRow.append('span')\n\tbrush.equation_div = rangeRow.append('div')\n\tbrush.rangeInput = new NumericRangeInput(brush.equation_div, range, () => {}, {\n\t\twidth: '125px',\n\t\tscaleFactor: getValueConversionFactor(tvs.term),\n\t\t// without a density plot, the term's declared bounds are the only check of a typed range\n\t\tmin: tvs.term.min,\n\t\tmax: tvs.term.max\n\t})\n\n\tif (mafFilterMode == 'maf') {\n\t\t// maf filter tvs\n\t\t// render maf range input and min allelic depth input\n\t\trangeLabel.text('MAF Range (0-1)')\n\t\tconst depthRow = holder\n\t\t\t.append('div')\n\t\t\t.style('display', 'flex')\n\t\t\t.style('align-items', 'center')\n\t\t\t.style('column-gap', '5px')\n\t\t\t.style('margin-top', '5px')\n\t\tdepthRow.append('span').text('Minimum Total Depth')\n\t\tbrush.depthInput = depthRow\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.attr('min', 1)\n\t\t\t.attr('step', 1)\n\t\t\t.style('width', '125px')\n\t\t\t// blank when no cutoff is set, so that it is not applied back as one, see clickApply()\n\t\t\t.property('value', Number.isFinite(tvs.minAllelicDepth) ? tvs.minAllelicDepth : '')\n\t\tbrush.apply_btn = addApplyButton(holder.append('div').style('margin-top', '10px'))\n\t} else if (mafFilterMode == 'value') {\n\t\t// any numerical FORMAT field read as-is; bounds come from the term's min/max, and no depth input\n\t\trangeLabel.text('Range')\n\t\tbrush.apply_btn = addApplyButton(rangeRow)\n\t} else if (mafFilterMode == 'totalDepth' || mafFilterMode == 'altDepth') {\n\t\t// allelic depth filter tvs; render an integer range input\n\t\trangeLabel.text(mafFilterMode == 'totalDepth' ? 'Total Depth' : 'Alt Allele Depth')\n\t\tbrush.apply_btn = addApplyButton(rangeRow)\n\t} else {\n\t\t// tvs is not part of maf filter\n\t\t// render range input\n\t\trangeLabel.text('Range')\n\t\tbrush.apply_btn = addApplyButton(rangeRow)\n\t}\n\n\t// a maf filter term opens with the range input focused, so a cutoff can be typed right away\n\tif (mafFilterMode) brush.rangeInput.getInput().node().focus()\n\n\tfunction addApplyButton(holder) {\n\t\treturn holder.append('button').text('Apply').on('click', clickApply)\n\t}\n\n\tfunction clickApply() {\n\t\tconst r = brush.rangeInput.getRange()\n\t\tif (!Number.isFinite(r.start) && !Number.isFinite(r.stop)) {\n\t\t\twindow.alert('Invalid range.')\n\t\t\treturn\n\t\t}\n\t\tconst new_tvs = { term: tvs.term, ranges: [r] }\n\t\tif (brush.depthInput) {\n\t\t\t/* the depth input is optional: a blank input leaves minAllelicDepth out, rather than storing\n\t\t\tthe depth of 1 that getMetricFromAlleleCnts() defaults to, which would then fill the input\n\t\t\tback in as a cutoff on the next edit of this tvs */\n\t\t\tconst str = brush.depthInput.property('value').trim()\n\t\t\tif (str) {\n\t\t\t\tconst minAllelicDepth = Number(str)\n\t\t\t\tif (!Number.isFinite(minAllelicDepth)) {\n\t\t\t\t\twindow.alert('Minimum allelic depth must be a numeric value.')\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tnew_tvs.minAllelicDepth = Math.max(minAllelicDepth, 1)\n\t\t\t}\n\t\t}\n\t\tself.dom.tip.hide()\n\t\tself.opts.callback(new_tvs)\n\t}\n}\n\nfunction addRangeTable(self) {\n\tconst brushes = self.num_obj.brushes\n\n\tconst range_divs = self.num_obj.range_table.selectAll('.range_div').data(brushes) //, d => brushes.indexOf(d))\n\n\trange_divs.exit().each(function () {\n\t\tselect(this).style('opacity', 1).transition().duration(100).style('opacity', 0).remove()\n\t})\n\n\trange_divs\n\t\t.enter()\n\t\t.append('tr')\n\t\t.attr('class', 'range_div')\n\t\t.style('white-space', 'nowrap')\n\t\t.style('padding', '2px')\n\t\t.transition()\n\t\t.duration(200)\n\t\t.each(function (brush, i) {\n\t\t\tenterRange(self, this, brush, i)\n\t\t})\n}\n\nfunction enterRange(self, tr, brush, i) {\n\tif (!brush.range_tr) brush.range_tr = select(tr)\n\tconst range_tr = brush.range_tr\n\tconst xscale = self.num_obj.xscale\n\n\trange_tr\n\t\t.append('td')\n\t\t.style('margin-left', '10px')\n\t\t.style('padding', '3px 10px')\n\t\t.style('font-size', '.9em')\n\t\t.text('Range ' + (i + 1) + ': ')\n\n\tbrush.equation_td = range_tr.append('td').style('width', '150px')\n\t// brush.range stays in the unit the term's values are stored in; only the <input> text is converted\n\tbrush.rangeInput = new NumericRangeInput(brush.equation_td, brush.range, apply, {\n\t\tscaleFactor: getValueConversionFactor(self.tvs.term)\n\t})\n\n\tmakeRangeButtons(self, brush)\n\t// note for empty range\n\tif (i == 0) {\n\t\tself.num_obj.range_table\n\t\t\t.append('tr')\n\t\t\t.attr('class', 'note_tr')\n\t\t\t.append('td')\n\t\t\t.attr('colspan', '3')\n\t\t\t.append('div')\n\t\t\t.style('font-size', '.8em')\n\t\t\t.style('margin-left', '20px')\n\t\t\t.style('font-style', 'italic')\n\t\t\t.style('color', '#888')\n\t\t\t.html('Option 1: Drag the rectangle to select a range. Overlapping ranges will be merged.')\n\t}\n\n\t// A note showing there is also the option to type values to select range\n\tif (i == 0) {\n\t\tself.num_obj.range_table\n\t\t\t.append('tr')\n\t\t\t.attr('class', 'note_tr')\n\t\t\t.append('td')\n\t\t\t.attr('colspan', '3')\n\t\t\t.append('div')\n\t\t\t.style('font-size', '.8em')\n\t\t\t.style('margin-left', '20px')\n\t\t\t.style('font-style', 'italic')\n\t\t\t.style('color', '#888')\n\t\t\t.html(\n\t\t\t\t`Option 2: Type in values to select a range.${\n\t\t\t\t\tself.tvs.term.valueConversion ? ` Values are in the unit of ${self.tvs.term.valueConversion.toUnit}.` : ''\n\t\t\t\t}`\n\t\t\t)\n\t}\n\n\t/* called by brush.rangeInput.parseRange() on an input change or on clicking Apply, and a thrown\n\terror is alerted by the caller */\n\tfunction apply(new_range) {\n\t\tconst minvalue = self.num_obj.density_data.min\n\t\tconst maxvalue = self.num_obj.density_data.max\n\t\tvalidateRangeInData(self, new_range)\n\t\tbrush.range = new_range\n\n\t\tconst start =\n\t\t\tnew_range.value != undefined ? new_range.value : new_range.start != undefined ? new_range.start : minvalue\n\t\tconst stop =\n\t\t\tnew_range.value != undefined ? new_range.value : new_range.stop != undefined ? new_range.stop : maxvalue\n\t\t// a typed bound beyond the data would place the brush outside of the plot; clamp to the plot.\n\t\t// the brush handler keeps such a bound as typed in the input text, see updateTempRanges()\n\t\tconst clamp = v => Math.min(Math.max(v, minvalue), maxvalue)\n\t\tbrush.elem.call(brush.d3brush).call(brush.d3brush.move, [clamp(start), clamp(stop)].map(xscale))\n\t}\n\n\tfunction makeRangeButtons(self, brush) {\n\t\tconst buttons_td = brush.range_tr.append('td')\n\t\tconst range = brush.range\n\n\t\t//'Apply' button\n\t\tbrush.apply_btn = buttons_td\n\t\t\t.append('button')\n\t\t\t.style('margin-left', '10px')\n\t\t\t.text('Apply')\n\t\t\t.attr('data-testid', 'sjpp-tvsnumeric-range-apply')\n\n\t\t\t.on('click', async () => {\n\t\t\t\ttry {\n\t\t\t\t\t// throws on unparsable text, or on a range that apply() rejects, since the input\n\t\t\t\t\t// keeps a rejected range as typed\n\t\t\t\t\tconst new_range = brush.rangeInput.parseRange()\n\t\t\t\t\tconst new_tvs = JSON.parse(JSON.stringify(self.tvs))\n\t\t\t\t\tdelete new_tvs.groupset_label\n\t\t\t\t\t// merge overlapping ranges\n\t\t\t\t\tif (self.num_obj.ranges.length > 1) new_tvs.ranges = mergeOverlapRanges(self, new_range)\n\t\t\t\t\telse new_tvs.ranges[range.index] = new_range\n\t\t\t\t\tvalidateNumericTvs(new_tvs)\n\t\t\t\t\tself.dom.tip.hide()\n\t\t\t\t\tself.opts.callback(new_tvs)\n\t\t\t\t} catch (ex) {\n\t\t\t\t\talert(ex)\n\t\t\t\t}\n\t\t\t})\n\n\t\t//'Delete' button\n\t\tbuttons_td\n\t\t\t.append('button')\n\t\t\t.attr('class', 'sja_filter_tag_btn sjpp_delete_btn')\n\t\t\t.style('display', self.num_obj.ranges.length > 1 ? 'inline-block' : 'none')\n\t\t\t.style('margin-left', '10px')\n\t\t\t.style('text-transform', 'uppercase')\n\t\t\t.text('Delete')\n\t\t\t.on('click', async () => {\n\t\t\t\tconst new_tvs = JSON.parse(JSON.stringify(self.tvs))\n\t\t\t\tnew_tvs.ranges.splice(range.index, 1)\n\t\t\t\tself.num_obj.ranges.pop()\n\t\t\t\tself.num_obj.brushes.pop()\n\t\t\t\tself.num_obj.num_div.select('.note_tr').remove()\n\t\t\t\taddBrushes(self)\n\t\t\t\taddRangeTable(self)\n\t\t\t\tif (new_tvs.ranges.length) self.opts.callback(new_tvs) //Remove the filter if no ranges\n\t\t\t})\n\t}\n}\n\nfunction mergeOverlapRanges(self, new_range) {\n\tlet ranges = JSON.parse(JSON.stringify(self.tvs.ranges))\n\tlet merged_flag = false\n\tfor (const [i, range] of ranges.entries()) {\n\t\t// skip unannotated categories and same range edits\n\t\tif (!range.value && new_range.index != i) {\n\t\t\tif (new_range.start <= range.start && new_range.stop >= range.stop) {\n\t\t\t\t// if new range is covering any existing range\n\t\t\t\trange.start = new_range.start\n\t\t\t\trange.stop = new_range.stop\n\t\t\t\tmerged_flag = true\n\t\t\t} else if (new_range.start <= range.stop && new_range.stop >= range.stop) {\n\t\t\t\t// if overlapping only at start of new range\n\t\t\t\trange.stop = new_range.stop\n\t\t\t\tmerged_flag = true\n\t\t\t} else if (new_range.stop >= range.start && new_range.start <= range.start) {\n\t\t\t\t// if overlapping only at end of new range\n\t\t\t\trange.start = new_range.start\n\t\t\t\tmerged_flag = true\n\t\t\t} else if (new_range.start >= range.start && new_range.stop <= range.stop) {\n\t\t\t\t//new_range is covered by existing range\n\t\t\t\tmerged_flag = true\n\t\t\t} else if (new_range.startunbounded) {\n\t\t\t\tif (new_range.stop > range.stop) {\n\t\t\t\t\t// if new_range is startunbounded and covering existing range\n\t\t\t\t\trange.stop = new_range.stop\n\t\t\t\t}\n\t\t\t\tdelete range.start\n\t\t\t\trange.startunbounded = true\n\t\t\t\tmerged_flag = true\n\t\t\t} else if (new_range.stopunbounded) {\n\t\t\t\tif (new_range.start < range.start) {\n\t\t\t\t\t// if new_range is stopunbounded and covering existing range\n\t\t\t\t\trange.start = new_range.start\n\t\t\t\t}\n\t\t\t\tdelete range.stop\n\t\t\t\trange.stopunbounded = true\n\t\t\t\tmerged_flag = true\n\t\t\t}\n\t\t}\n\t}\n\n\tif (merged_flag) {\n\t\t// if overlapped and existing range merged then remove existing merged range\n\t\tif (new_range.index <= ranges.length - 1) ranges.splice(new_range.index, 1)\n\t} else {\n\t\t//if not overlapped then add to ranges[]\n\t\tranges = JSON.parse(JSON.stringify(self.tvs.ranges))\n\t\tif (new_range.index) ranges[new_range.index] = new_range\n\t\telse ranges.push(new_range)\n\t}\n\treturn ranges\n}\n\nasync function showCheckList_numeric(self, tvs, div) {\n\tif (!tvs.term.values) {\n\t\t// no special categories available for this term\n\t\treturn\n\t}\n\t// numerical checkbox for unannotated cats\n\tconst values = await self.opts.vocabApi.getNumericUncomputableCategories(tvs.term, self.filter)\n\tconst unannotated_cats = []\n\tconst lst = values?.lst || values\n\tfor (const cat of lst) {\n\t\tconst key = 'key' in cat ? cat.key : cat.value\n\t\tif (!('key' in cat)) cat.key = key\n\t\tif (!('value' in cat)) cat.value = key\n\t\tif (key in tvs.term.values) {\n\t\t\tcat.label = tvs.term.values[key].label\n\t\t\tunannotated_cats.push(cat)\n\t\t}\n\t}\n\n\tconst sortedVals = unannotated_cats.sort((a, b) => {\n\t\treturn b.samplecount - a.samplecount\n\t})\n\n\t// other categories div\t(only appear if unannotated categories present)\n\tconst unanno_div = div.append('div').style('padding', '5px').style('color', '#000')\n\n\t// 'Apply' button\n\tconst callback = indexes => {\n\t\t//update term values by ckeckbox values\n\t\ttry {\n\t\t\tconst new_tvs = JSON.parse(JSON.stringify(tvs))\n\t\t\tdelete new_tvs.groupset_label\n\t\t\tnew_tvs.ranges = [\n\t\t\t\t...new_tvs.ranges.filter(r => !('value' in r)),\n\t\t\t\t...indexes.map(i => ({ value: sortedVals[i].value, label: sortedVals[i].label }))\n\t\t\t]\n\t\t\tself.dom.tip.hide()\n\t\t\tif (new_tvs.ranges.length == 0) throw 'select at least one range or category'\n\t\t\t//callback only if tvs is changed\n\t\t\tif (JSON.parse(JSON.stringify(tvs) != new_tvs)) {\n\t\t\t\ttry {\n\t\t\t\t\tvalidateNumericTvs(new_tvs)\n\t\t\t\t} catch (e) {\n\t\t\t\t\twindow.alert(e)\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tself.opts.callback(new_tvs)\n\t\t\t}\n\t\t} catch (e) {\n\t\t\twindow.alert(e)\n\t\t}\n\t}\n\n\tconst values_table = self.makeValueTable(unanno_div, tvs, sortedVals, callback).node()\n}\n\n/* a range typed outside of the density plot would select no sample, e.g. x>100 when the data max is 50,\nand would invert the brush selection. only reject a range that has no overlap with the data, as a\npartial overlap still selects samples, and its brush is clamped to the plot */\nfunction validateRangeInData(self, range) {\n\tif (range.value != undefined) return // a single value or special category\n\tconst { min, max } = self.num_obj.density_data\n\tif (!Number.isFinite(min) || !Number.isFinite(max)) return\n\tconst aboveMax = !range.startunbounded && (range.start > max || (range.start == max && !range.startinclusive))\n\tconst belowMin = !range.stopunbounded && (range.stop < min || (range.stop == min && !range.stopinclusive))\n\tif (!aboveMax && !belowMin) return\n\t// the message is in the unit shown to users, same as the input text\n\tconst sf = getValueConversionFactor(self.tvs.term)\n\tconst [minLabel, maxLabel] = [min, max].map(v => roundValueAuto(v * sf))\n\tthrow `The range is outside of the data, which ranges from ${minLabel} to ${maxLabel}`\n}\n\nfunction validateNumericTvs(tvs) {\n\tif (!tvs.term) throw 'tvs.term is not defined'\n\tif (!tvs.ranges) throw `.values[] missing for a term ${tvs.term.name}`\n\tif (!Array.isArray(tvs.ranges)) throw `.values[] is not an array for a term ${tvs.term.name}`\n\tif (!tvs.ranges.length) throw `no categories selected for ${tvs.term.name}`\n\tfor (const range of tvs.ranges) {\n\t\tif (range.value != undefined) {\n\t\t\t// a special category, not a value from numerical range\n\t\t\tif (!range.label) throw `.label missing for special category for a term ${tvs.term.name}`\n\t\t} else {\n\t\t\t// a regular range\n\t\t\tif (range.startunbounded) {\n\t\t\t\tif (range.stopunbounded) throw `both start & stop are unbounded for a term ${tvs.term.name}`\n\t\t\t\tif (!Number.isFinite(range.stop)) throw `.stop undefined when start is unbounded for a term ${tvs.term.name}`\n\t\t\t} else if (range.stopunbounded) {\n\t\t\t\tif (!Number.isFinite(range.start)) throw `.start undefined when stop is unbounded for a term ${tvs.term.name}`\n\t\t\t} else {\n\t\t\t\tif (!Number.isFinite(range.start))\n\t\t\t\t\tthrow `.start undefined when start is not unbounded for a term ${tvs.term.name}`\n\t\t\t\tif (!Number.isFinite(range.stop)) throw `.stop undefined when stop is not unbounded for a term ${tvs.term.name}`\n\t\t\t\tif (range.start >= range.stop) throw `.start is not lower than stop for a term ${tvs.term.name}`\n\t\t\t}\n\t\t}\n\t}\n}\n"],
+  "mappings": ";;;;;;;;;;;;;;;;;;;;;;;;AAkCO,IAAM,UAAU;AAAA,EACtB,MAAM;AAAA,EACN;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AACD;AAEA,SAAS,cAAc,GAAG;AACzB,QAAM,OAAO,EAAE,KAAK;AACpB,SAAO,KAAK,SAAS,KAClB,WAAW,IAAI,IACf,mBAAmB,WAAW,IAAI,IAAI,OAAO,WAAW,KAAK,UAAU,GAAG,EAAE,CAAC,IAAI;AACrF;AAEA,SAAS,eAAe,KAAK;AAC5B,MAAI,IAAI,OAAO,UAAU,GAAG;AAC3B,UAAM,IAAI,IAAI,OAAO,CAAC;AACtB,QAAI,WAAW,GAAG;AAEjB,UAAI,EAAE,MAAO,QAAO,EAAE,KAAK,WAAW,EAAE,KAAK,EAAE;AAC/C,UAAI,IAAI,KAAK,UAAU,IAAI,KAAK,OAAO,EAAE,KAAK,KAAK,IAAI,KAAK,OAAO,EAAE,KAAK,EAAE;AAC3E,eAAO,EAAE,KAAK,WAAW,IAAI,KAAK,OAAO,EAAE,KAAK,EAAE,KAAK,EAAE;AAC1D,cAAQ,MAAM,QAAQ,EAAE,KAAK,8BAA8B,IAAI,KAAK,IAAI,EAAE;AAC1E,aAAO,EAAE,KAAK,WAAW,EAAE,KAAK,EAAE;AAAA,IACnC;AAEA,WAAO,EAAE,KAAK,gBAAgB,GAAG,IAAI,IAAI,IAAI,aAAa,GAAG,EAAE;AAAA,EAChE;AAEA,SAAO,EAAE,KAAK,IAAI,OAAO,SAAS,eAAe,aAAa,GAAG,EAAE;AACpE;AAKA,SAAS,aAAa,KAAK;AAC1B,MAAI,IAAI,KAAK,iBAAiB,MAAO,QAAO;AAC5C,MAAI,CAAC,OAAO,SAAS,IAAI,eAAe,KAAK,IAAI,kBAAkB,EAAG,QAAO;AAC7E,SAAO,sBAAsB,IAAI,eAAe;AACjD;AAEO,SAAS,gBAAgB,OAAO,MAAM;AAC5C,QAAM,IAAI;AACV,MAAI,MAAM,kBAAkB,MAAM,eAAe;AAChD,UAAM,MAAM,CAAC,OAAO,OACnB,6EAA6E,IAAI;AAClF,UAAM,KAAK;AACX,WAAO,SAAS,IAAI,QAAG,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,IAAI,QAAG,CAAC;AAAA,EACtD;AAQA,QAAM,KAAK,KAAK;AAEhB,MAAI,MAAM;AACT,WAAO,GAAG,CAAC,IAAI,MAAM,gBAAgB,SAAS,MAAM,IACnD,KAAK,aAAa,MAAM,MAAM,GAAG,UAAU,GAAG,QAAQ,GAAG,WAAW,IAAI,MAAM,IAC/E;AAED,MAAI,MAAM;AACT,WAAO,GAAG,CAAC,IAAI,MAAM,iBAAiB,SAAS,MAAM,IACpD,KAAK,aAAa,MAAM,OAAO,GAAG,UAAU,GAAG,QAAQ,GAAG,WAAW,IAAI,MAAM,KAChF;AAID,MAAI,WAAW;AACf,MAAI,IAAI;AACP,gBAAY,aAAa,MAAM,OAAO,GAAG,UAAU,GAAG,QAAQ,GAAG,WAAW;AAC5E,eAAW,aAAa,MAAM,MAAM,GAAG,UAAU,GAAG,QAAQ,GAAG,WAAW;AAAA,EAC3E,OAAO;AAEN;AAAC,KAAC,WAAW,QAAQ,IAAI,cAAc,CAAC,MAAM,OAAO,MAAM,IAAI,CAAC;AAAA,EACjE;AAEA,SAAO,GAAG,SAAS;AAAA,KACf,MAAM,iBAAiB,SAAS,MAAM;AAAA,KACtC,CAAC;AAAA,KACD,MAAM,gBAAgB,SAAS,MAAM;AAAA,KACrC,QAAQ;AACb;AAEA,SAAS,mBAAmB,GAAG,KAAK;AACnC,SAAO,IAAI,IAAI,OAAO,MAAM,GAAG,CAAC,EAAE,OAAO,OAAK,EAAE,SAAS,EAAE,IAAI,EAAE;AAClE;AAEA,eAAe,SAAS,MAAM,KAAK,KAAK;AAEvC,QAAM,iBAAiB,IAAI,OAAO,KAAK;AACvC,OAAK,UAAU,CAAC;AAEhB,OAAK,QAAQ,UAAU,eACrB,OAAO,KAAK,EACZ,KAAK,SAAS,SAAS,EACvB,MAAM,WAAW,KAAK,EACtB,MAAM,SAAS,MAAM;AAEvB,OAAK,QAAQ,YAAY;AAAA,IACxB,OAAO;AAAA,IACP,QAAQ;AAAA,IACR,MAAM;AAAA,IACN,MAAM;AAAA,IACN,QAAQ;AAAA,EACT;AAEA,MAAI,OAAO,KAAK,KAAK,SAAS,gBAAgB,YAAY;AACzD,QAAI;AACH,YAAM,OAAO,MAAM,KAAK,KAAK,SAAS;AAAA,QACrC;AAAA,UACC,UAAU;AAAA,UACV,IAAI,EAAE,MAAM,IAAI,MAAM,GAAG,EAAE,MAAM,aAAa,EAAE;AAAA;AAAA,UAEhD,QAAQ,KAAK;AAAA,UACb,MAAM,KAAK,QAAQ,UAAU;AAAA,UAC7B,QAAQ,KAAK,QAAQ,UAAU;AAAA,QAChC;AAAA,QACA,KAAK,KAAK;AAAA,MACX;AACA,UAAI,KAAK,MAAO,OAAM,KAAK;AAC3B,UAAI,KAAK,QAAQ,QAAQ,KAAK,QAAQ,MAAM;AAC3C,cAAM;AAAA,MACP;AACA,WAAK,QAAQ,eAAe;AAAA,IAC7B,SAAS,KAAK;AACb,YAAM;AAAA,IACP;AAAA,EACD,OAAO;AAKN,SAAK,QAAQ,eAAe,CAAC;AAAA,EAC9B;AAEA,MAAI,KAAK,QAAQ,aAAa,MAAO,OAAM,KAAK,QAAQ,aAAa;AAErE,MAAI,CAAC,KAAK,QAAQ,aAAa,SAAS,EAAE,GAAG,QAAQ,CAAC,GAAG,SAAS,MAAM;AAEvE,2BAAuB,MAAM,GAAG;AAChC;AAAA,EACD;AAEA,OAAK,KAAK,IAAI,eAAe;AAAA,IAC5B,QAAQ,KAAK,QAAQ;AAAA,IACrB,IAAI,KAAK,QAAQ;AAAA,IACjB,OAAO,KAAK,QAAQ,UAAU;AAAA,IAC9B,QAAQ,KAAK,QAAQ,UAAU;AAAA,IAC/B,QAAQ,KAAK,QAAQ,UAAU;AAAA;AAAA,IAE/B,aAAa,yBAAyB,IAAI,IAAI;AAAA,EAC/C,CAAC;AACD,OAAK,GAAG,OAAO;AACf,OAAK,QAAQ,MAAM,KAAK,GAAG;AAE3B,OAAK,QAAQ,cAAc,KAAK,QAAQ,QACtC,OAAO,OAAO,EACd,MAAM,gBAAgB,OAAO,EAC7B,MAAM,mBAAmB,UAAU;AAErC,QAAM,SAAS,CAAC;AAEhB,aAAW,CAAC,OAAO,KAAK,KAAK,IAAI,OAAO,QAAQ,GAAG;AAClD,UAAM,QAAQ;AACd,WAAO,KAAK,KAAK;AAAA,EAClB;AAEA,OAAK,QAAQ,UAAU,KAAK,GAAG,OAAO,KAAK,SAAS,SAAS;AAE7D,OAAK,QAAQ,SAAS,KAAK,GAAG;AAE9B,OAAK,QAAQ,SAAS;AACtB,OAAK,QAAQ,UAAU,CAAC;AACxB,aAAW,IAAI;AACf,gBAAc,IAAI;AAiBlB,MAAI,CAAC,OAAO,QAAQ;AACnB,UAAM,WAAW,MAAM,cAAc,IAAI;AACzC,gBAAY,MAAM,UAAU,QAAQ;AAAA,EACrC;AAEA,OAAK,QAAQ,QAAQ,QAAQ,WAAS,MAAM,KAAK,CAAC;AAClD,QAAM,sBAAsB,MAAM,KAAK,GAAG;AAC3C;AAEA,SAAS,eAAe,KAAK;AAC5B,MAAI,CAAC,IAAI,OAAQ,KAAI,SAAS,CAAC;AAChC;AAEA,SAAS,uBAAuB,MAAM,KAAK;AAC1C,QAAM,YAAY,IAAI,KAAK,SAAS,CAAC;AACrC,QAAM,QAAQ,IAAI,UAAU,IAAI,OAAO,CAAC,IAAI,IAAI,OAAO,CAAC,IAAI;AAC5D,QAAM,UAAU,KAAK,QAAQ;AAC7B,UAAQ,UAAU,GAAG,EAAE,OAAO;AAE9B,QAAM,QAAQ,CAAC;AACf,QAAM,SAAS,QAAQ,OAAO,KAAK,EAAE,MAAM,gBAAgB,KAAK;AAIhE,QAAM,gBAAgB,IAAI,KAAK;AAC/B,MAAI,iBAAiB,SAAS,IAAI,KAAK,WAAW,SAAS,GAAG;AAG7D,UAAM,MAAM,IAAI,KAAK;AACrB,UAAM,OAAO,IAAI,MAAM,GAAG,EAAE,EAAE,KAAK,IAAI,IAAI,UAAU,IAAI,IAAI,SAAS,CAAC;AACvE,WACE,OAAO,KAAK,EACZ,MAAM,iBAAiB,KAAK,EAC5B,MAAM,aAAa,MAAM,EACzB,MAAM,WAAW,GAAG,EACpB,KAAK,kDAAkD,IAAI,EAAE;AAAA,EAChE;AAEA,QAAM,WAAW,OACf,OAAO,KAAK,EACZ,MAAM,WAAW,MAAM,EACvB,MAAM,eAAe,QAAQ,EAC7B,MAAM,cAAc,KAAK;AAC3B,QAAM,aAAa,SAAS,OAAO,MAAM;AACzC,QAAM,eAAe,SAAS,OAAO,KAAK;AAC1C,QAAM,aAAa,IAAI,kBAAkB,MAAM,cAAc,OAAO,MAAM;AAAA,EAAC,GAAG;AAAA,IAC7E,OAAO;AAAA,IACP,aAAa,yBAAyB,IAAI,IAAI;AAAA;AAAA,IAE9C,KAAK,IAAI,KAAK;AAAA,IACd,KAAK,IAAI,KAAK;AAAA,EACf,CAAC;AAED,MAAI,iBAAiB,OAAO;AAG3B,eAAW,KAAK,iBAAiB;AACjC,UAAM,WAAW,OACf,OAAO,KAAK,EACZ,MAAM,WAAW,MAAM,EACvB,MAAM,eAAe,QAAQ,EAC7B,MAAM,cAAc,KAAK,EACzB,MAAM,cAAc,KAAK;AAC3B,aAAS,OAAO,MAAM,EAAE,KAAK,qBAAqB;AAClD,UAAM,aAAa,SACjB,OAAO,OAAO,EACd,KAAK,QAAQ,QAAQ,EACrB,KAAK,OAAO,CAAC,EACb,KAAK,QAAQ,CAAC,EACd,MAAM,SAAS,OAAO,EAEtB,SAAS,SAAS,OAAO,SAAS,IAAI,eAAe,IAAI,IAAI,kBAAkB,EAAE;AACnF,UAAM,YAAY,eAAe,OAAO,OAAO,KAAK,EAAE,MAAM,cAAc,MAAM,CAAC;AAAA,EAClF,WAAW,iBAAiB,SAAS;AAEpC,eAAW,KAAK,OAAO;AACvB,UAAM,YAAY,eAAe,QAAQ;AAAA,EAC1C,WAAW,iBAAiB,gBAAgB,iBAAiB,YAAY;AAExE,eAAW,KAAK,iBAAiB,eAAe,gBAAgB,kBAAkB;AAClF,UAAM,YAAY,eAAe,QAAQ;AAAA,EAC1C,OAAO;AAGN,eAAW,KAAK,OAAO;AACvB,UAAM,YAAY,eAAe,QAAQ;AAAA,EAC1C;AAGA,MAAI,cAAe,OAAM,WAAW,SAAS,EAAE,KAAK,EAAE,MAAM;AAE5D,WAAS,eAAeA,SAAQ;AAC/B,WAAOA,QAAO,OAAO,QAAQ,EAAE,KAAK,OAAO,EAAE,GAAG,SAAS,UAAU;AAAA,EACpE;AAEA,WAAS,aAAa;AACrB,UAAM,IAAI,MAAM,WAAW,SAAS;AACpC,QAAI,CAAC,OAAO,SAAS,EAAE,KAAK,KAAK,CAAC,OAAO,SAAS,EAAE,IAAI,GAAG;AAC1D,aAAO,MAAM,gBAAgB;AAC7B;AAAA,IACD;AACA,UAAM,UAAU,EAAE,MAAM,IAAI,MAAM,QAAQ,CAAC,CAAC,EAAE;AAC9C,QAAI,MAAM,YAAY;AAIrB,YAAM,MAAM,MAAM,WAAW,SAAS,OAAO,EAAE,KAAK;AACpD,UAAI,KAAK;AACR,cAAM,kBAAkB,OAAO,GAAG;AAClC,YAAI,CAAC,OAAO,SAAS,eAAe,GAAG;AACtC,iBAAO,MAAM,gDAAgD;AAC7D;AAAA,QACD;AACA,gBAAQ,kBAAkB,KAAK,IAAI,iBAAiB,CAAC;AAAA,MACtD;AAAA,IACD;AACA,SAAK,IAAI,IAAI,KAAK;AAClB,SAAK,KAAK,SAAS,OAAO;AAAA,EAC3B;AACD;AAEA,SAAS,cAAc,MAAM;AAC5B,QAAM,UAAU,KAAK,QAAQ;AAE7B,QAAM,aAAa,KAAK,QAAQ,YAAY,UAAU,YAAY,EAAE,KAAK,OAAO;AAEhF,aAAW,KAAK,EAAE,KAAK,WAAY;AAClC,mBAAO,IAAI,EAAE,MAAM,WAAW,CAAC,EAAE,WAAW,EAAE,SAAS,GAAG,EAAE,MAAM,WAAW,CAAC,EAAE,OAAO;AAAA,EACxF,CAAC;AAED,aACE,MAAM,EACN,OAAO,IAAI,EACX,KAAK,SAAS,WAAW,EACzB,MAAM,eAAe,QAAQ,EAC7B,MAAM,WAAW,KAAK,EACtB,WAAW,EACX,SAAS,GAAG,EACZ,KAAK,SAAU,OAAO,GAAG;AACzB,eAAW,MAAM,MAAM,OAAO,CAAC;AAAA,EAChC,CAAC;AACH;AAEA,SAAS,WAAW,MAAM,IAAI,OAAO,GAAG;AACvC,MAAI,CAAC,MAAM,SAAU,OAAM,WAAW,eAAO,EAAE;AAC/C,QAAM,WAAW,MAAM;AACvB,QAAM,SAAS,KAAK,QAAQ;AAE5B,WACE,OAAO,IAAI,EACX,MAAM,eAAe,MAAM,EAC3B,MAAM,WAAW,UAAU,EAC3B,MAAM,aAAa,MAAM,EACzB,KAAK,YAAY,IAAI,KAAK,IAAI;AAEhC,QAAM,cAAc,SAAS,OAAO,IAAI,EAAE,MAAM,SAAS,OAAO;AAEhE,QAAM,aAAa,IAAI,kBAAkB,MAAM,aAAa,MAAM,OAAO,OAAO;AAAA,IAC/E,aAAa,yBAAyB,KAAK,IAAI,IAAI;AAAA,EACpD,CAAC;AAED,mBAAiB,MAAM,KAAK;AAE5B,MAAI,KAAK,GAAG;AACX,SAAK,QAAQ,YACX,OAAO,IAAI,EACX,KAAK,SAAS,SAAS,EACvB,OAAO,IAAI,EACX,KAAK,WAAW,GAAG,EACnB,OAAO,KAAK,EACZ,MAAM,aAAa,MAAM,EACzB,MAAM,eAAe,MAAM,EAC3B,MAAM,cAAc,QAAQ,EAC5B,MAAM,SAAS,MAAM,EACrB,KAAK,oFAAoF;AAAA,EAC5F;AAGA,MAAI,KAAK,GAAG;AACX,SAAK,QAAQ,YACX,OAAO,IAAI,EACX,KAAK,SAAS,SAAS,EACvB,OAAO,IAAI,EACX,KAAK,WAAW,GAAG,EACnB,OAAO,KAAK,EACZ,MAAM,aAAa,MAAM,EACzB,MAAM,eAAe,MAAM,EAC3B,MAAM,cAAc,QAAQ,EAC5B,MAAM,SAAS,MAAM,EACrB;AAAA,MACA,8CACC,KAAK,IAAI,KAAK,kBAAkB,8BAA8B,KAAK,IAAI,KAAK,gBAAgB,MAAM,MAAM,EACzG;AAAA,IACD;AAAA,EACF;AAIA,WAAS,MAAM,WAAW;AACzB,UAAM,WAAW,KAAK,QAAQ,aAAa;AAC3C,UAAM,WAAW,KAAK,QAAQ,aAAa;AAC3C,wBAAoB,MAAM,SAAS;AACnC,UAAM,QAAQ;AAEd,UAAM,QACL,UAAU,SAAS,SAAY,UAAU,QAAQ,UAAU,SAAS,SAAY,UAAU,QAAQ;AACnG,UAAM,OACL,UAAU,SAAS,SAAY,UAAU,QAAQ,UAAU,QAAQ,SAAY,UAAU,OAAO;AAGjG,UAAM,QAAQ,OAAK,KAAK,IAAI,KAAK,IAAI,GAAG,QAAQ,GAAG,QAAQ;AAC3D,UAAM,KAAK,KAAK,MAAM,OAAO,EAAE,KAAK,MAAM,QAAQ,MAAM,CAAC,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,EAAE,IAAI,MAAM,CAAC;AAAA,EAChG;AAEA,WAAS,iBAAiBC,OAAMC,QAAO;AACtC,UAAM,aAAaA,OAAM,SAAS,OAAO,IAAI;AAC7C,UAAM,QAAQA,OAAM;AAGpB,IAAAA,OAAM,YAAY,WAChB,OAAO,QAAQ,EACf,MAAM,eAAe,MAAM,EAC3B,KAAK,OAAO,EACZ,KAAK,eAAe,6BAA6B,EAEjD,GAAG,SAAS,YAAY;AACxB,UAAI;AAGH,cAAM,YAAYA,OAAM,WAAW,WAAW;AAC9C,cAAM,UAAU,KAAK,MAAM,KAAK,UAAUD,MAAK,GAAG,CAAC;AACnD,eAAO,QAAQ;AAEf,YAAIA,MAAK,QAAQ,OAAO,SAAS,EAAG,SAAQ,SAAS,mBAAmBA,OAAM,SAAS;AAAA,YAClF,SAAQ,OAAO,MAAM,KAAK,IAAI;AACnC,2BAAmB,OAAO;AAC1B,QAAAA,MAAK,IAAI,IAAI,KAAK;AAClB,QAAAA,MAAK,KAAK,SAAS,OAAO;AAAA,MAC3B,SAAS,IAAI;AACZ,cAAM,EAAE;AAAA,MACT;AAAA,IACD,CAAC;AAGF,eACE,OAAO,QAAQ,EACf,KAAK,SAAS,oCAAoC,EAClD,MAAM,WAAWA,MAAK,QAAQ,OAAO,SAAS,IAAI,iBAAiB,MAAM,EACzE,MAAM,eAAe,MAAM,EAC3B,MAAM,kBAAkB,WAAW,EACnC,KAAK,QAAQ,EACb,GAAG,SAAS,YAAY;AACxB,YAAM,UAAU,KAAK,MAAM,KAAK,UAAUA,MAAK,GAAG,CAAC;AACnD,cAAQ,OAAO,OAAO,MAAM,OAAO,CAAC;AACpC,MAAAA,MAAK,QAAQ,OAAO,IAAI;AACxB,MAAAA,MAAK,QAAQ,QAAQ,IAAI;AACzB,MAAAA,MAAK,QAAQ,QAAQ,OAAO,UAAU,EAAE,OAAO;AAC/C,iBAAWA,KAAI;AACf,oBAAcA,KAAI;AAClB,UAAI,QAAQ,OAAO,OAAQ,CAAAA,MAAK,KAAK,SAAS,OAAO;AAAA,IACtD,CAAC;AAAA,EACH;AACD;AAEA,SAAS,mBAAmB,MAAM,WAAW;AAC5C,MAAI,SAAS,KAAK,MAAM,KAAK,UAAU,KAAK,IAAI,MAAM,CAAC;AACvD,MAAI,cAAc;AAClB,aAAW,CAAC,GAAG,KAAK,KAAK,OAAO,QAAQ,GAAG;AAE1C,QAAI,CAAC,MAAM,SAAS,UAAU,SAAS,GAAG;AACzC,UAAI,UAAU,SAAS,MAAM,SAAS,UAAU,QAAQ,MAAM,MAAM;AAEnE,cAAM,QAAQ,UAAU;AACxB,cAAM,OAAO,UAAU;AACvB,sBAAc;AAAA,MACf,WAAW,UAAU,SAAS,MAAM,QAAQ,UAAU,QAAQ,MAAM,MAAM;AAEzE,cAAM,OAAO,UAAU;AACvB,sBAAc;AAAA,MACf,WAAW,UAAU,QAAQ,MAAM,SAAS,UAAU,SAAS,MAAM,OAAO;AAE3E,cAAM,QAAQ,UAAU;AACxB,sBAAc;AAAA,MACf,WAAW,UAAU,SAAS,MAAM,SAAS,UAAU,QAAQ,MAAM,MAAM;AAE1E,sBAAc;AAAA,MACf,WAAW,UAAU,gBAAgB;AACpC,YAAI,UAAU,OAAO,MAAM,MAAM;AAEhC,gBAAM,OAAO,UAAU;AAAA,QACxB;AACA,eAAO,MAAM;AACb,cAAM,iBAAiB;AACvB,sBAAc;AAAA,MACf,WAAW,UAAU,eAAe;AACnC,YAAI,UAAU,QAAQ,MAAM,OAAO;AAElC,gBAAM,QAAQ,UAAU;AAAA,QACzB;AACA,eAAO,MAAM;AACb,cAAM,gBAAgB;AACtB,sBAAc;AAAA,MACf;AAAA,IACD;AAAA,EACD;AAEA,MAAI,aAAa;AAEhB,QAAI,UAAU,SAAS,OAAO,SAAS,EAAG,QAAO,OAAO,UAAU,OAAO,CAAC;AAAA,EAC3E,OAAO;AAEN,aAAS,KAAK,MAAM,KAAK,UAAU,KAAK,IAAI,MAAM,CAAC;AACnD,QAAI,UAAU,MAAO,QAAO,UAAU,KAAK,IAAI;AAAA,QAC1C,QAAO,KAAK,SAAS;AAAA,EAC3B;AACA,SAAO;AACR;AAEA,eAAe,sBAAsB,MAAM,KAAK,KAAK;AACpD,MAAI,CAAC,IAAI,KAAK,QAAQ;AAErB;AAAA,EACD;AAEA,QAAM,SAAS,MAAM,KAAK,KAAK,SAAS,iCAAiC,IAAI,MAAM,KAAK,MAAM;AAC9F,QAAM,mBAAmB,CAAC;AAC1B,QAAM,MAAM,QAAQ,OAAO;AAC3B,aAAW,OAAO,KAAK;AACtB,UAAM,MAAM,SAAS,MAAM,IAAI,MAAM,IAAI;AACzC,QAAI,EAAE,SAAS,KAAM,KAAI,MAAM;AAC/B,QAAI,EAAE,WAAW,KAAM,KAAI,QAAQ;AACnC,QAAI,OAAO,IAAI,KAAK,QAAQ;AAC3B,UAAI,QAAQ,IAAI,KAAK,OAAO,GAAG,EAAE;AACjC,uBAAiB,KAAK,GAAG;AAAA,IAC1B;AAAA,EACD;AAEA,QAAM,aAAa,iBAAiB,KAAK,CAAC,GAAG,MAAM;AAClD,WAAO,EAAE,cAAc,EAAE;AAAA,EAC1B,CAAC;AAGD,QAAM,aAAa,IAAI,OAAO,KAAK,EAAE,MAAM,WAAW,KAAK,EAAE,MAAM,SAAS,MAAM;AAGlF,QAAM,WAAW,aAAW;AAE3B,QAAI;AACH,YAAM,UAAU,KAAK,MAAM,KAAK,UAAU,GAAG,CAAC;AAC9C,aAAO,QAAQ;AACf,cAAQ,SAAS;AAAA,QAChB,GAAG,QAAQ,OAAO,OAAO,OAAK,EAAE,WAAW,EAAE;AAAA,QAC7C,GAAG,QAAQ,IAAI,QAAM,EAAE,OAAO,WAAW,CAAC,EAAE,OAAO,OAAO,WAAW,CAAC,EAAE,MAAM,EAAE;AAAA,MACjF;AACA,WAAK,IAAI,IAAI,KAAK;AAClB,UAAI,QAAQ,OAAO,UAAU,EAAG,OAAM;AAEtC,UAAI,KAAK,MAAM,KAAK,UAAU,GAAG,KAAK,OAAO,GAAG;AAC/C,YAAI;AACH,6BAAmB,OAAO;AAAA,QAC3B,SAAS,GAAG;AACX,iBAAO,MAAM,CAAC;AACd;AAAA,QACD;AACA,aAAK,KAAK,SAAS,OAAO;AAAA,MAC3B;AAAA,IACD,SAAS,GAAG;AACX,aAAO,MAAM,CAAC;AAAA,IACf;AAAA,EACD;AAEA,QAAM,eAAe,KAAK,eAAe,YAAY,KAAK,YAAY,QAAQ,EAAE,KAAK;AACtF;AAKA,SAAS,oBAAoB,MAAM,OAAO;AACzC,MAAI,MAAM,SAAS,OAAW;AAC9B,QAAM,EAAE,KAAK,IAAI,IAAI,KAAK,QAAQ;AAClC,MAAI,CAAC,OAAO,SAAS,GAAG,KAAK,CAAC,OAAO,SAAS,GAAG,EAAG;AACpD,QAAM,WAAW,CAAC,MAAM,mBAAmB,MAAM,QAAQ,OAAQ,MAAM,SAAS,OAAO,CAAC,MAAM;AAC9F,QAAM,WAAW,CAAC,MAAM,kBAAkB,MAAM,OAAO,OAAQ,MAAM,QAAQ,OAAO,CAAC,MAAM;AAC3F,MAAI,CAAC,YAAY,CAAC,SAAU;AAE5B,QAAM,KAAK,yBAAyB,KAAK,IAAI,IAAI;AACjD,QAAM,CAAC,UAAU,QAAQ,IAAI,CAAC,KAAK,GAAG,EAAE,IAAI,OAAK,eAAe,IAAI,EAAE,CAAC;AACvE,QAAM,uDAAuD,QAAQ,OAAO,QAAQ;AACrF;AAEA,SAAS,mBAAmB,KAAK;AAChC,MAAI,CAAC,IAAI,KAAM,OAAM;AACrB,MAAI,CAAC,IAAI,OAAQ,OAAM,gCAAgC,IAAI,KAAK,IAAI;AACpE,MAAI,CAAC,MAAM,QAAQ,IAAI,MAAM,EAAG,OAAM,wCAAwC,IAAI,KAAK,IAAI;AAC3F,MAAI,CAAC,IAAI,OAAO,OAAQ,OAAM,8BAA8B,IAAI,KAAK,IAAI;AACzE,aAAW,SAAS,IAAI,QAAQ;AAC/B,QAAI,MAAM,SAAS,QAAW;AAE7B,UAAI,CAAC,MAAM,MAAO,OAAM,kDAAkD,IAAI,KAAK,IAAI;AAAA,IACxF,OAAO;AAEN,UAAI,MAAM,gBAAgB;AACzB,YAAI,MAAM,cAAe,OAAM,8CAA8C,IAAI,KAAK,IAAI;AAC1F,YAAI,CAAC,OAAO,SAAS,MAAM,IAAI,EAAG,OAAM,sDAAsD,IAAI,KAAK,IAAI;AAAA,MAC5G,WAAW,MAAM,eAAe;AAC/B,YAAI,CAAC,OAAO,SAAS,MAAM,KAAK,EAAG,OAAM,sDAAsD,IAAI,KAAK,IAAI;AAAA,MAC7G,OAAO;AACN,YAAI,CAAC,OAAO,SAAS,MAAM,KAAK;AAC/B,gBAAM,2DAA2D,IAAI,KAAK,IAAI;AAC/E,YAAI,CAAC,OAAO,SAAS,MAAM,IAAI,EAAG,OAAM,yDAAyD,IAAI,KAAK,IAAI;AAC9G,YAAI,MAAM,SAAS,MAAM,KAAM,OAAM,4CAA4C,IAAI,KAAK,IAAI;AAAA,MAC/F;AAAA,IACD;AAAA,EACD;AACD;",
+  "names": ["holder", "self", "brush"]
+}

package/dist/chunk-DFKTWNCC.js

@@ -0,0 +1,55 @@
+import {
+  colorinframe
+} from "./chunk-4ASBDE27.js";
+import {
+  IN_frame,
+  OUT_frame
+} from "./chunk-WJLRU5OF.js";
+
+// src/spliceevent.phrase.js
+function spliceevent_phrase_default(evt) {
+  const htmls = [];
+  if (evt.isaltexon || evt.isskipexon) {
+    const exonstart = Math.min(...evt.skippedexon);
+    const exonstop = Math.max(...evt.skippedexon);
+    htmls.push(
+      '<div style="display:inline-block">' + (exonstart == exonstop ? "exon " + (exonstart + 1) : "exons " + (exonstart + 1) + "-" + (exonstop + 1)) + " " + (evt.isaltexon ? "alternative usage" : "skipping") + "</div>"
+    );
+    if (evt.isaltexon) {
+      htmls.push(
+        "<div class=sja_tinylogo_body>" + evt.gmB.isoform + ", " + evt.gmA.isoform + "</div><div class=sja_tinylogo_head>ISOFORMS</div>"
+      );
+    } else {
+      htmls.push("<div class=sja_tinylogo_body>" + evt.gm.isoform + "</div><div class=sja_tinylogo_head>ISOFORM</div>");
+    }
+    if (evt.junctionB.data) {
+      htmls.push(
+        "<div class=sja_tinylogo_body>" + evt.junctionB.data.length + "</div><div class=sja_tinylogo_head>SAMPLE" + (evt.junctionB.data.length > 1 ? "S" : "") + "</div>"
+      );
+    }
+    htmls.push("<div class=sja_tinylogo_body>" + evt.percentage + " %</div><div class=sja_tinylogo_head>PERCENT</div>");
+    if (evt.framenocheck) {
+      if (evt.utr3) {
+        htmls.push(`<div class=sja_tinylogo_body style="background-color:#ededed">3' UTR</div>`);
+      } else if (evt.utr5) {
+        htmls.push(`<div class=sja_tinylogo_body style="background-color:#ededed">5' UTR</div>`);
+      }
+    } else if (evt.frame == IN_frame) {
+      htmls.push(
+        '<div class=sja_tinylogo_body style="background-color:' + colorinframe + ';color:white">IN</div><div class=sja_tinylogo_head>FRAME</div>'
+      );
+    } else if (evt.frame == OUT_frame) {
+      htmls.push("<div class=sja_tinylogo_body>OUT</div><div class=sja_tinylogo_head>FRAME</div>");
+    } else {
+      htmls.push("<div class=sja_tinylogo_body>?</div><div class=sja_tinylogo_head>FRAME</div>");
+    }
+  } else {
+    return "unknown event type!!";
+  }
+  return htmls.join(" ");
+}
+
+export {
+  spliceevent_phrase_default
+};
+//# sourceMappingURL=chunk-DFKTWNCC.js.map