@sjcrh/proteinpaint-client 2.219.1 → 2.221.0

package/dist/block.tk.bedgraphdot-GERXK2O6.js

@@ -1,375 +0,0 @@
-import {
-  appear2 as appear,
-  axisstyle,
-  bwSetting,
-  disappear2 as disappear,
-  rgb2hex
-} from "./chunk-BKW35Z4U.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-ETXOEP4N.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-5NI77Z3O.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import {
-  dofetch
-} from "./chunk-CJHNPYFQ.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-NR6WFCPF.js";
-import "./chunk-GN2A5NL5.js";
-import {
-  axisLeft
-} from "./chunk-ME3HB3V6.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import {
-  format,
-  linear
-} from "./chunk-4OLM3KSB.js";
-import "./chunk-6XKAOSQE.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// src/block.tk.bedgraphdot.js
-async function loadTk(tk, block) {
-  block.tkcloakon(tk);
-  block.block_setheight();
-  const _finish = loadTk_finish_closure(tk, block);
-  try {
-    if (tk.uninitialized) {
-      makeTk(tk, block);
-      delete tk.uninitialized;
-    }
-    await loadTk_do(tk, block);
-    _finish({});
-  } catch (e) {
-    tk.height_main = 50;
-    _finish({ error: e.message || e });
-    if (e.stack) console.log(e.stack);
-    return;
-  }
-}
-function loadTk_finish_closure(tk, block) {
-  return (data) => {
-    block.tkcloakoff(tk, { error: data.error });
-    block.block_setheight();
-    block.setllabel();
-  };
-}
-function makeTk(tk, block) {
-  if (!tk.scale) tk.scale = {};
-  if (Number.isFinite(tk.scale.min) && Number.isFinite(tk.scale.max)) {
-  } else {
-    tk.scale.auto = true;
-  }
-  if (!Number.isFinite(tk.barheight)) tk.barheight = 100;
-  tk.height_main = tk.toppad + tk.barheight + tk.bottompad;
-  if (!tk.ncolor) tk.ncolor = "#BD005E";
-  if (!tk.ncolor2) tk.ncolor2 = "#5E00BD";
-  if (!tk.pcolor) tk.pcolor = "#005EBD";
-  if (!tk.pcolor2) tk.pcolor2 = "#FA7D00";
-  tk.leftaxis = tk.gleft.append("g");
-  tk.config_handle = block.maketkconfighandle(tk).on("click", () => {
-    tk.tkconfigtip.clear().showunder(tk.config_handle.node());
-  });
-}
-async function loadTk_do(tk, block) {
-  block.tkcloakon(tk);
-  const par = block.tkarg_q(tk);
-  par.rglst = rglst_quickfix(tk, block);
-  par.genome = block.genome.name;
-  tk.height_main = tk.toppad + tk.barheight + tk.bottompad;
-  tk.glider.selectAll("*").remove();
-  const data = await dofetch("tkbedgraphdot", par);
-  if (data.error) throw data.error;
-  tk.tklabel.transition().attr("y", tk.barheight / 2);
-  for (const r of data.rglst) {
-    const img = tk.glider.append("g").attr("transform", "translate(" + r.xoff + "," + tk.toppad + ")").append("image").attr("width", r.width).attr("height", tk.barheight).attr("xlink:href", r.img);
-  }
-  tk.leftaxis.selectAll("*").remove();
-  if (data.nodata) {
-    throw "no data in view range";
-  }
-  if (data.minv != void 0) {
-    tk.scale.min = data.minv;
-    tk.scale.max = data.maxv;
-  }
-  const scale = linear().domain([tk.scale.min, tk.scale.max]).range([tk.barheight, 0]);
-  const axis = axisLeft().scale(scale).tickValues([tk.scale.min, tk.scale.max]);
-  if (tk.integer4axis) {
-    axis.tickFormat(format("d"));
-  }
-  axisstyle({
-    axis: tk.leftaxis.call(axis),
-    color: "black",
-    showline: true
-  });
-}
-function bigwigconfigpanel(tk, block, holder, loader) {
-  const config = {
-    pcolor: {},
-    ncolor: {},
-    pcolor2: {},
-    ncolor2: {},
-    // .row
-    // .lab
-    dotplot: {},
-    // .row
-    dividefactor: {}
-  };
-  {
-    const row = holder.append("div").style("margin-bottom", "15px");
-    row.append("span").html("Height  ");
-    row.append("input").attr("size", 5).property("value", tk.barheight).on("keyup", (event) => {
-      if (event.code != "Enter") return;
-      const s = event.target.value;
-      if (s == "") return;
-      const v = Number.parseInt(s);
-      if (Number.isNaN(v) || v <= 1) {
-        alert("track height must be positive integer");
-        return;
-      }
-      tk.barheight = v;
-      loader(bwSetting.height);
-    });
-  }
-  config.pcolor.row = holder.append("div").style("margin-bottom", "15px");
-  config.pcolor.lab = config.pcolor.row.append("span").text("Positive value color").style("padding-right", "10px");
-  config.pcolor.row.append("input").attr("type", "color").property("value", rgb2hex(tk.pcolor)).on("change", (event) => {
-    tk.pcolor = event.target.value;
-    loader(bwSetting.pcolor);
-  });
-  config.ncolor.row = holder.append("div").style("margin-bottom", "15px");
-  config.ncolor.lab = config.ncolor.row.append("span").text("Negative value color").style("padding-right", "10px");
-  config.ncolor.row.append("input").attr("type", "color").property("value", rgb2hex(tk.ncolor)).on("change", (event) => {
-    tk.ncolor = event.target.value;
-    loader(bwSetting.ncolor);
-  });
-  if (!tk.scale.auto) {
-    config.pcolor2.row = holder.append("div").style("margin-bottom", "15px");
-    config.pcolor2.lab = config.pcolor2.row.append("span").html("&ge;Max color").style("padding-right", "10px");
-    config.pcolor2.row.append("input").attr("type", "color").property("value", rgb2hex(tk.pcolor2)).on("change", (event) => {
-      tk.pcolor2 = event.target.value;
-      loader(bwSetting.pcolor2);
-    });
-    config.ncolor2.row = holder.append("div").style("margin-bottom", "15px");
-    config.ncolor2.lab = config.ncolor2.row.append("span").html("&le;Min color").style("padding-right", "10px");
-    config.ncolor2.row.append("input").attr("type", "color").property("value", rgb2hex(tk.ncolor2)).on("change", (event) => {
-      tk.ncolor2 = event.target.value;
-      loader(bwSetting.ncolor2);
-    });
-  }
-  {
-    const row = holder.append("div").style("margin-bottom", "15px");
-    row.append("span").html("Y scale&nbsp;&nbsp;");
-    const ss = row.append("select");
-    const ssop1 = ss.append("option").text("automatic");
-    const ssop2 = ss.append("option").text("fixed");
-    const ssop3 = ss.append("option").text("percentile");
-    ss.on("change", (event) => {
-      const si = event.target.selectedIndex;
-      if (si == 0) {
-        fixed.style("display", "none");
-        percentile.style("display", "none");
-        tk.scale.auto = 1;
-        loader(bwSetting.autoscale);
-        return;
-      }
-      if (si == 1) {
-        fixed.style("display", "block");
-        percentile.style("display", "none");
-        return;
-      }
-      fixed.style("display", "none");
-      percentile.style("display", "block");
-    });
-    let usingfixed = false, usingperc = false;
-    if (tk.scale.auto) {
-      ssop1.property("selected", 1);
-    } else {
-      if (tk.scale.percentile) {
-        usingperc = true;
-        ssop3.property("selected", 1);
-      } else {
-        usingfixed = true;
-        ssop2.property("selected", 1);
-      }
-    }
-    const fixed = row.append("div").style("margin", "10px").style("display", usingfixed ? "block" : "none");
-    {
-      const row1 = fixed.append("div");
-      row1.append("span").html("Max&nbsp;").style("font-family", "Courier").style("font-size", ".9em");
-      const max = row1.append("input").attr("size", 5);
-      if (usingfixed) {
-        max.property("value", tk.scale.max);
-      }
-      const row2 = fixed.append("div");
-      row2.append("span").html("Min&nbsp;").style("font-family", "Courier").style("font-size", ".9em");
-      const min = row2.append("input").attr("size", 5);
-      if (usingfixed) {
-        min.property("value", tk.scale.min);
-      }
-      row2.append("button").text("Set").style("margin-left", "5px").on("click", () => {
-        const s1 = max.property("value");
-        if (s1 == "") {
-          return;
-        }
-        const v1 = Number.parseFloat(s1);
-        if (Number.isNaN(v1)) {
-          alert("invalid max value");
-          return;
-        }
-        const s2 = min.property("value");
-        if (s2 == "") {
-          return;
-        }
-        const v2 = Number.parseFloat(s2);
-        if (Number.isNaN(v2)) {
-          alert("invalid min value");
-          return;
-        }
-        delete tk.scale.auto;
-        delete tk.scale.percentile;
-        tk.scale.max = v1;
-        tk.scale.min = v2;
-        loader(bwSetting.fixedscale);
-      });
-    }
-    const percentile = row.append("div").style("margin-top", "6px").style("display", usingperc ? "block" : "none");
-    {
-      percentile.append("span").html("Percentile&nbsp;").style("font-family", "Courier").style("font-size", ".9em");
-      const input = percentile.append("input").attr("size", 5);
-      if (usingperc) {
-        input.property("value", tk.scale.percentile);
-      }
-      const setpercentile = (s) => {
-        if (s == "") return;
-        const v = Number.parseInt(s);
-        if (Number.isNaN(v) || v <= 0 || v > 100) {
-          alert("percentile should be integer within range 0-100");
-          return;
-        }
-        delete tk.scale.auto;
-        tk.scale.percentile = v;
-        loader(bwSetting.percentilescale);
-      };
-      input.on("keyup", (event) => {
-        if (event.code != "Enter") return;
-        setpercentile(input.property("value"));
-      });
-      percentile.append("button").text("Set").style("margin-left", "5px").on("click", () => {
-        setpercentile(input.property("value"));
-      });
-    }
-  }
-  {
-    config.dotplot.row = holder.append("div").style("margin-bottom", "15px");
-    config.dotplot.row.append("span").html("Dot plot&nbsp;&nbsp;");
-    const s = config.dotplot.row.append("select").on("change", (event) => {
-      const i = event.target.selectedIndex;
-      if (i == 0) {
-        delete tk.dotplotfactor;
-      } else {
-        tk.dotplotfactor = Number.parseInt(event.target.options[i].innerHTML);
-      }
-      loader(i == 0 ? bwSetting.nodotplot : bwSetting.usedotplot);
-    });
-    let o = s.append("option").text("no");
-    if (!tk.dotplotfactor) {
-      o.property("selected", 1);
-    }
-    o = s.append("option").text("5");
-    if (tk.dotplotfactor == 5) {
-      o.property("selected", 1);
-    }
-    o = s.append("option").text("10");
-    if (tk.dotplotfactor == 10) {
-      o.property("selected", 1);
-    }
-    o = s.append("option").text("15");
-    if (tk.dotplotfactor == 15) {
-      o.property("selected", 1);
-    }
-    o = s.append("option").text("20");
-    if (tk.dotplotfactor == 20) {
-      o.property("selected", 1);
-    }
-  }
-  config.dividefactor.row = holder.append("div");
-  {
-    const id = Math.random().toString();
-    const input = config.dividefactor.row.append("input").attr("type", "checkbox").attr("id", id);
-    if (!tk.normalize.disable) {
-      input.property("checked", 1);
-    }
-    config.dividefactor.row.append("label").html("&nbsp;Apply normalization").attr("for", id);
-    const folder = config.dividefactor.row.append("div").style("margin", "5px 10px 0px 20px").style("display", tk.normalize.disable ? "none" : "block");
-    folder.append("span").html("Divide raw value by&nbsp;");
-    const factorinput = folder.append("input").attr("type", "number").style("width", "60px").property("value", tk.normalize.dividefactor).on("keyup", (event) => {
-      if (event.code != "Enter" && event.code != "NumpadEnter") return;
-      const v = event.target.value;
-      if (v <= 0) {
-        return;
-      }
-      tk.normalize.dividefactor = v;
-      loader(bwSetting.usedividefactor);
-    });
-    folder.append("div").text("Enter a value above zero").style("font-size", ".7em").style("color", "#858585");
-    input.on("change", (event) => {
-      if (event.target.checked) {
-        appear(folder);
-        delete tk.normalize.disable;
-        factorinput.property("value", tk.normalize.dividefactor);
-        loader(bwSetting.usedividefactor);
-        return;
-      }
-      disappear(folder);
-      tk.normalize.disable = 1;
-      loader(bwSetting.nodividefactor);
-    });
-  }
-  return config;
-}
-function rglst_quickfix(tk, block) {
-  let rglst = block.tkarg_rglst(tk);
-  if (block.usegm) {
-    const r = rglst[0];
-    r.usegm_isoform = block.usegm.isoform;
-    for (let i = 1; i < rglst.length; i++) {
-      const ri = rglst[i];
-      r.width += ri.width + block.regionspace;
-      r.start = Math.min(r.start, ri.start);
-      r.stop = Math.max(r.stop, ri.stop);
-    }
-    rglst = [r];
-  }
-  let xoff = 0;
-  for (const r of rglst) {
-    r.xoff = 0;
-    xoff += r.width + block.regionspace;
-  }
-  if (block.subpanels.length == tk.subpanels.length) {
-    for (const r of block.subpanels) {
-      rglst.push({
-        chr: r.chr,
-        start: r.start,
-        stop: r.stop,
-        width: r.width,
-        exonsf: r.exonsf,
-        xoff
-      });
-      xoff += r.width + r.leftpad;
-    }
-  }
-  return rglst;
-}
-export {
-  bigwigconfigpanel,
-  loadTk,
-  loadTk_do
-};
-//# sourceMappingURL=block.tk.bedgraphdot-GERXK2O6.js.map

package/dist/block.tk.bedgraphdot-GERXK2O6.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../src/block.tk.bedgraphdot.js"],
-  "sourcesContent": ["import { scaleLinear } from 'd3-scale'\nimport * as d3axis from 'd3-axis'\nimport * as client from './client'\nimport { format as d3format } from 'd3-format'\n\nexport async function loadTk(tk, block) {\n\t/*\n\t */\n\n\tblock.tkcloakon(tk)\n\tblock.block_setheight()\n\n\tconst _finish = loadTk_finish_closure(tk, block) // function used at multiple places\n\n\ttry {\n\t\tif (tk.uninitialized) {\n\t\t\tmakeTk(tk, block)\n\t\t\tdelete tk.uninitialized\n\t\t}\n\n\t\tawait loadTk_do(tk, block)\n\n\t\t_finish({})\n\t} catch (e) {\n\t\ttk.height_main = 50\n\t\t_finish({ error: e.message || e })\n\t\tif (e.stack) console.log(e.stack)\n\t\treturn\n\t}\n}\n\nfunction loadTk_finish_closure(tk, block) {\n\treturn data => {\n\t\tblock.tkcloakoff(tk, { error: data.error })\n\t\tblock.block_setheight()\n\t\tblock.setllabel()\n\t}\n}\n\nfunction makeTk(tk, block) {\n\tif (!tk.scale) tk.scale = {}\n\tif (Number.isFinite(tk.scale.min) && Number.isFinite(tk.scale.max)) {\n\t} else {\n\t\ttk.scale.auto = true\n\t}\n\n\tif (!Number.isFinite(tk.barheight)) tk.barheight = 100\n\ttk.height_main = tk.toppad + tk.barheight + tk.bottompad\n\tif (!tk.ncolor) tk.ncolor = '#BD005E'\n\tif (!tk.ncolor2) tk.ncolor2 = '#5E00BD'\n\tif (!tk.pcolor) tk.pcolor = '#005EBD'\n\tif (!tk.pcolor2) tk.pcolor2 = '#FA7D00'\n\n\ttk.leftaxis = tk.gleft.append('g')\n\n\ttk.config_handle = block.maketkconfighandle(tk).on('click', () => {\n\t\ttk.tkconfigtip.clear().showunder(tk.config_handle.node())\n\t\t//bigwigconfigpanel(tk, block, tk.tkconfigtip.d, ()=>bigwigload(tk,block))\n\t})\n}\n\nexport async function loadTk_do(tk, block) {\n\t/*\n\tcalled by change view range\n\tor updating any rendering style, e.g. height\n\t*/\n\tblock.tkcloakon(tk)\n\tconst par = block.tkarg_q(tk)\n\tpar.rglst = rglst_quickfix(tk, block)\n\tpar.genome = block.genome.name\n\n\ttk.height_main = tk.toppad + tk.barheight + tk.bottompad\n\n\ttk.glider.selectAll('*').remove()\n\n\tconst data = await client.dofetch('tkbedgraphdot', par)\n\tif (data.error) throw data.error\n\n\t// in case height changed\n\ttk.tklabel.transition().attr('y', tk.barheight / 2)\n\n\tfor (const r of data.rglst) {\n\t\tconst img = tk.glider\n\t\t\t.append('g')\n\t\t\t.attr('transform', 'translate(' + r.xoff + ',' + tk.toppad + ')')\n\t\t\t.append('image')\n\t\t\t.attr('width', r.width)\n\t\t\t.attr('height', tk.barheight)\n\t\t\t.attr('xlink:href', r.img)\n\t}\n\n\ttk.leftaxis.selectAll('*').remove()\n\n\tif (data.nodata) {\n\t\tthrow 'no data in view range'\n\t\t// won't update axis\n\t}\n\n\tif (data.minv != undefined) {\n\t\ttk.scale.min = data.minv\n\t\ttk.scale.max = data.maxv\n\t}\n\n\t// update axis\n\tconst scale = scaleLinear()\n\t\t.domain([tk.scale.min, tk.scale.max])\n\t\t.range([tk.barheight, 0])\n\n\tconst axis = d3axis\n\t\t.axisLeft()\n\t\t.scale(scale)\n\t\t.tickValues([tk.scale.min, tk.scale.max])\n\n\tif (tk.integer4axis) {\n\t\taxis.tickFormat(d3format('d'))\n\t}\n\n\tclient.axisstyle({\n\t\taxis: tk.leftaxis.call(axis),\n\t\tcolor: 'black',\n\t\tshowline: true\n\t})\n}\n\nexport function bigwigconfigpanel(tk, block, holder, loader) {\n\t// provide hooks to each component, so that caller can choose to hide certain ones\n\tconst config = {\n\t\tpcolor: {},\n\t\tncolor: {},\n\t\tpcolor2: {},\n\t\tncolor2: {},\n\t\t// .row\n\t\t// .lab\n\n\t\tdotplot: {},\n\t\t// .row\n\n\t\tdividefactor: {}\n\t}\n\n\t// height\n\t{\n\t\tconst row = holder.append('div').style('margin-bottom', '15px')\n\t\trow.append('span').html('Height&nbsp;&nbsp;')\n\t\trow\n\t\t\t.append('input')\n\t\t\t.attr('size', 5)\n\t\t\t.property('value', tk.barheight)\n\t\t\t.on('keyup', event => {\n\t\t\t\tif (event.code != 'Enter') return\n\t\t\t\tconst s = event.target.value\n\t\t\t\tif (s == '') return\n\t\t\t\tconst v = Number.parseInt(s)\n\t\t\t\tif (Number.isNaN(v) || v <= 1) {\n\t\t\t\t\talert('track height must be positive integer')\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\ttk.barheight = v\n\t\t\t\tloader(client.bwSetting.height)\n\t\t\t})\n\t}\n\n\t// pcolor\n\tconfig.pcolor.row = holder.append('div').style('margin-bottom', '15px')\n\tconfig.pcolor.lab = config.pcolor.row\n\t\t.append('span')\n\t\t.text('Positive value color')\n\t\t.style('padding-right', '10px')\n\tconfig.pcolor.row\n\t\t.append('input')\n\t\t.attr('type', 'color')\n\t\t.property('value', client.rgb2hex(tk.pcolor))\n\t\t.on('change', event => {\n\t\t\ttk.pcolor = event.target.value\n\t\t\tloader(client.bwSetting.pcolor)\n\t\t})\n\n\t// ncolor\n\tconfig.ncolor.row = holder.append('div').style('margin-bottom', '15px')\n\tconfig.ncolor.lab = config.ncolor.row\n\t\t.append('span')\n\t\t.text('Negative value color')\n\t\t.style('padding-right', '10px')\n\tconfig.ncolor.row\n\t\t.append('input')\n\t\t.attr('type', 'color')\n\t\t.property('value', client.rgb2hex(tk.ncolor))\n\t\t.on('change', event => {\n\t\t\ttk.ncolor = event.target.value\n\t\t\tloader(client.bwSetting.ncolor)\n\t\t})\n\n\tif (!tk.scale.auto) {\n\t\t// pcolor2\n\t\tconfig.pcolor2.row = holder.append('div').style('margin-bottom', '15px')\n\t\tconfig.pcolor2.lab = config.pcolor2.row\n\t\t\t.append('span')\n\t\t\t.html('&ge;Max color')\n\t\t\t.style('padding-right', '10px')\n\t\tconfig.pcolor2.row\n\t\t\t.append('input')\n\t\t\t.attr('type', 'color')\n\t\t\t.property('value', client.rgb2hex(tk.pcolor2))\n\t\t\t.on('change', event => {\n\t\t\t\ttk.pcolor2 = event.target.value\n\t\t\t\tloader(client.bwSetting.pcolor2)\n\t\t\t})\n\t\t// ncolor2\n\t\tconfig.ncolor2.row = holder.append('div').style('margin-bottom', '15px')\n\t\tconfig.ncolor2.lab = config.ncolor2.row\n\t\t\t.append('span')\n\t\t\t.html('&le;Min color')\n\t\t\t.style('padding-right', '10px')\n\t\tconfig.ncolor2.row\n\t\t\t.append('input')\n\t\t\t.attr('type', 'color')\n\t\t\t.property('value', client.rgb2hex(tk.ncolor2))\n\t\t\t.on('change', event => {\n\t\t\t\ttk.ncolor2 = event.target.value\n\t\t\t\tloader(client.bwSetting.ncolor2)\n\t\t\t})\n\t}\n\n\t// y-scale\n\t{\n\t\tconst row = holder.append('div').style('margin-bottom', '15px')\n\t\trow.append('span').html('Y scale&nbsp;&nbsp;')\n\t\tconst ss = row.append('select')\n\t\tconst ssop1 = ss.append('option').text('automatic')\n\t\tconst ssop2 = ss.append('option').text('fixed')\n\t\tconst ssop3 = ss.append('option').text('percentile')\n\t\tss.on('change', event => {\n\t\t\tconst si = event.target.selectedIndex\n\t\t\tif (si == 0) {\n\t\t\t\tfixed.style('display', 'none')\n\t\t\t\tpercentile.style('display', 'none')\n\t\t\t\ttk.scale.auto = 1\n\t\t\t\tloader(client.bwSetting.autoscale)\n\t\t\t\treturn\n\t\t\t}\n\t\t\tif (si == 1) {\n\t\t\t\tfixed.style('display', 'block')\n\t\t\t\tpercentile.style('display', 'none')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tfixed.style('display', 'none')\n\t\t\tpercentile.style('display', 'block')\n\t\t})\n\t\tlet usingfixed = false,\n\t\t\tusingperc = false\n\t\tif (tk.scale.auto) {\n\t\t\tssop1.property('selected', 1)\n\t\t} else {\n\t\t\tif (tk.scale.percentile) {\n\t\t\t\tusingperc = true\n\t\t\t\tssop3.property('selected', 1)\n\t\t\t} else {\n\t\t\t\tusingfixed = true\n\t\t\t\tssop2.property('selected', 1)\n\t\t\t}\n\t\t}\n\t\t// y-scale fixed\n\t\tconst fixed = row\n\t\t\t.append('div')\n\t\t\t.style('margin', '10px')\n\t\t\t.style('display', usingfixed ? 'block' : 'none')\n\t\t{\n\t\t\tconst row1 = fixed.append('div')\n\t\t\trow1\n\t\t\t\t.append('span')\n\t\t\t\t.html('Max&nbsp;')\n\t\t\t\t.style('font-family', 'Courier')\n\t\t\t\t.style('font-size', '.9em')\n\t\t\tconst max = row1.append('input').attr('size', 5)\n\t\t\tif (usingfixed) {\n\t\t\t\tmax.property('value', tk.scale.max)\n\t\t\t}\n\t\t\tconst row2 = fixed.append('div')\n\t\t\trow2\n\t\t\t\t.append('span')\n\t\t\t\t.html('Min&nbsp;')\n\t\t\t\t.style('font-family', 'Courier')\n\t\t\t\t.style('font-size', '.9em')\n\t\t\tconst min = row2.append('input').attr('size', 5)\n\t\t\tif (usingfixed) {\n\t\t\t\tmin.property('value', tk.scale.min)\n\t\t\t}\n\t\t\trow2\n\t\t\t\t.append('button')\n\t\t\t\t.text('Set')\n\t\t\t\t.style('margin-left', '5px')\n\t\t\t\t.on('click', () => {\n\t\t\t\t\tconst s1 = max.property('value')\n\t\t\t\t\tif (s1 == '') {\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\t\t\t\t\tconst v1 = Number.parseFloat(s1)\n\t\t\t\t\tif (Number.isNaN(v1)) {\n\t\t\t\t\t\talert('invalid max value')\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\t\t\t\t\tconst s2 = min.property('value')\n\t\t\t\t\tif (s2 == '') {\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\t\t\t\t\tconst v2 = Number.parseFloat(s2)\n\t\t\t\t\tif (Number.isNaN(v2)) {\n\t\t\t\t\t\talert('invalid min value')\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\t\t\t\t\tdelete tk.scale.auto\n\t\t\t\t\tdelete tk.scale.percentile\n\t\t\t\t\ttk.scale.max = v1\n\t\t\t\t\ttk.scale.min = v2\n\t\t\t\t\tloader(client.bwSetting.fixedscale)\n\t\t\t\t})\n\t\t}\n\t\t// y-scale percentile\n\t\tconst percentile = row\n\t\t\t.append('div')\n\t\t\t.style('margin-top', '6px')\n\t\t\t.style('display', usingperc ? 'block' : 'none')\n\t\t{\n\t\t\tpercentile\n\t\t\t\t.append('span')\n\t\t\t\t.html('Percentile&nbsp;')\n\t\t\t\t.style('font-family', 'Courier')\n\t\t\t\t.style('font-size', '.9em')\n\t\t\tconst input = percentile.append('input').attr('size', 5)\n\t\t\tif (usingperc) {\n\t\t\t\tinput.property('value', tk.scale.percentile)\n\t\t\t}\n\t\t\tconst setpercentile = s => {\n\t\t\t\tif (s == '') return\n\t\t\t\tconst v = Number.parseInt(s)\n\t\t\t\tif (Number.isNaN(v) || v <= 0 || v > 100) {\n\t\t\t\t\talert('percentile should be integer within range 0-100')\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tdelete tk.scale.auto\n\t\t\t\ttk.scale.percentile = v\n\t\t\t\tloader(client.bwSetting.percentilescale)\n\t\t\t}\n\t\t\tinput.on('keyup', event => {\n\t\t\t\tif (event.code != 'Enter') return\n\t\t\t\tsetpercentile(input.property('value'))\n\t\t\t})\n\t\t\tpercentile\n\t\t\t\t.append('button')\n\t\t\t\t.text('Set')\n\t\t\t\t.style('margin-left', '5px')\n\t\t\t\t.on('click', () => {\n\t\t\t\t\tsetpercentile(input.property('value'))\n\t\t\t\t})\n\t\t}\n\t}\n\n\t// dot plot\n\t{\n\t\tconfig.dotplot.row = holder.append('div').style('margin-bottom', '15px')\n\t\tconfig.dotplot.row.append('span').html('Dot plot&nbsp;&nbsp;')\n\t\tconst s = config.dotplot.row.append('select').on('change', event => {\n\t\t\tconst i = event.target.selectedIndex\n\t\t\tif (i == 0) {\n\t\t\t\tdelete tk.dotplotfactor\n\t\t\t} else {\n\t\t\t\ttk.dotplotfactor = Number.parseInt(event.target.options[i].innerHTML)\n\t\t\t}\n\t\t\tloader(i == 0 ? client.bwSetting.nodotplot : client.bwSetting.usedotplot)\n\t\t})\n\t\tlet o = s.append('option').text('no')\n\t\tif (!tk.dotplotfactor) {\n\t\t\to.property('selected', 1)\n\t\t}\n\t\to = s.append('option').text('5')\n\t\tif (tk.dotplotfactor == 5) {\n\t\t\to.property('selected', 1)\n\t\t}\n\t\to = s.append('option').text('10')\n\t\tif (tk.dotplotfactor == 10) {\n\t\t\to.property('selected', 1)\n\t\t}\n\t\to = s.append('option').text('15')\n\t\tif (tk.dotplotfactor == 15) {\n\t\t\to.property('selected', 1)\n\t\t}\n\t\to = s.append('option').text('20')\n\t\tif (tk.dotplotfactor == 20) {\n\t\t\to.property('selected', 1)\n\t\t}\n\t}\n\n\t// normalization using a divide-by factor\n\tconfig.dividefactor.row = holder.append('div')\n\t//.style('margin-bottom','15px')\n\t{\n\t\tconst id = Math.random().toString()\n\t\tconst input = config.dividefactor.row\n\t\t\t.append('input')\n\t\t\t.attr('type', 'checkbox')\n\t\t\t.attr('id', id)\n\t\tif (!tk.normalize.disable) {\n\t\t\tinput.property('checked', 1)\n\t\t}\n\t\tconfig.dividefactor.row\n\t\t\t.append('label')\n\t\t\t.html('&nbsp;Apply normalization')\n\t\t\t.attr('for', id)\n\n\t\tconst folder = config.dividefactor.row\n\t\t\t.append('div')\n\t\t\t.style('margin', '5px 10px 0px 20px')\n\t\t\t.style('display', tk.normalize.disable ? 'none' : 'block')\n\t\tfolder.append('span').html('Divide raw value by&nbsp;')\n\t\tconst factorinput = folder\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.style('width', '60px')\n\t\t\t.property('value', tk.normalize.dividefactor)\n\t\t\t.on('keyup', event => {\n\t\t\t\tif (event.code != 'Enter' && event.code != 'NumpadEnter') return\n\t\t\t\tconst v = event.target.value\n\t\t\t\tif (v <= 0) {\n\t\t\t\t\t// don't allow\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\ttk.normalize.dividefactor = v\n\t\t\t\tloader(client.bwSetting.usedividefactor)\n\t\t\t})\n\t\tfolder\n\t\t\t.append('div')\n\t\t\t.text('Enter a value above zero')\n\t\t\t.style('font-size', '.7em')\n\t\t\t.style('color', '#858585')\n\t\tinput.on('change', event => {\n\t\t\tif (event.target.checked) {\n\t\t\t\tclient.appear(folder)\n\t\t\t\tdelete tk.normalize.disable\n\t\t\t\tfactorinput.property('value', tk.normalize.dividefactor)\n\t\t\t\tloader(client.bwSetting.usedividefactor)\n\t\t\t\treturn\n\t\t\t}\n\t\t\tclient.disappear(folder)\n\t\t\ttk.normalize.disable = 1\n\t\t\tloader(client.bwSetting.nodividefactor)\n\t\t})\n\t}\n\treturn config\n}\n\nfunction rglst_quickfix(tk, block) {\n\t/*\nthis is just a quick fix, leaving to be resolved in P4\nshould be exported from client\n*/\n\tlet rglst = block.tkarg_rglst(tk) // note here: not tkarg_usegm\n\tif (block.usegm) {\n\t\t/* to merge par.rglst[] into one region\n\t\tthis does not apply to subpanels\n\t\t*/\n\t\tconst r = rglst[0]\n\t\tr.usegm_isoform = block.usegm.isoform\n\t\tfor (let i = 1; i < rglst.length; i++) {\n\t\t\tconst ri = rglst[i]\n\t\t\tr.width += ri.width + block.regionspace\n\t\t\tr.start = Math.min(r.start, ri.start)\n\t\t\tr.stop = Math.max(r.stop, ri.stop)\n\t\t}\n\t\trglst = [r]\n\t}\n\n\t// append xoff to each r from block\n\tlet xoff = 0\n\tfor (const r of rglst) {\n\t\tr.xoff = 0\n\t\txoff += r.width + block.regionspace\n\t}\n\n\tif (block.subpanels.length == tk.subpanels.length) {\n\t\t/*\n\t\tmust wait when subpanels are added to tk\n\t\tthis is only done when block finishes loading data for main tk\n\t\t*/\n\t\tfor (const r of block.subpanels) {\n\t\t\trglst.push({\n\t\t\t\tchr: r.chr,\n\t\t\t\tstart: r.start,\n\t\t\t\tstop: r.stop,\n\t\t\t\twidth: r.width,\n\t\t\t\texonsf: r.exonsf,\n\t\t\t\txoff: xoff\n\t\t\t})\n\t\t\txoff += r.width + r.leftpad\n\t\t}\n\t}\n\treturn rglst\n}\n"],
-  "mappings": ";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAKA,eAAsB,OAAO,IAAI,OAAO;AAIvC,QAAM,UAAU,EAAE;AAClB,QAAM,gBAAgB;AAEtB,QAAM,UAAU,sBAAsB,IAAI,KAAK;AAE/C,MAAI;AACH,QAAI,GAAG,eAAe;AACrB,aAAO,IAAI,KAAK;AAChB,aAAO,GAAG;AAAA,IACX;AAEA,UAAM,UAAU,IAAI,KAAK;AAEzB,YAAQ,CAAC,CAAC;AAAA,EACX,SAAS,GAAG;AACX,OAAG,cAAc;AACjB,YAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,CAAC;AACjC,QAAI,EAAE,MAAO,SAAQ,IAAI,EAAE,KAAK;AAChC;AAAA,EACD;AACD;AAEA,SAAS,sBAAsB,IAAI,OAAO;AACzC,SAAO,UAAQ;AACd,UAAM,WAAW,IAAI,EAAE,OAAO,KAAK,MAAM,CAAC;AAC1C,UAAM,gBAAgB;AACtB,UAAM,UAAU;AAAA,EACjB;AACD;AAEA,SAAS,OAAO,IAAI,OAAO;AAC1B,MAAI,CAAC,GAAG,MAAO,IAAG,QAAQ,CAAC;AAC3B,MAAI,OAAO,SAAS,GAAG,MAAM,GAAG,KAAK,OAAO,SAAS,GAAG,MAAM,GAAG,GAAG;AAAA,EACpE,OAAO;AACN,OAAG,MAAM,OAAO;AAAA,EACjB;AAEA,MAAI,CAAC,OAAO,SAAS,GAAG,SAAS,EAAG,IAAG,YAAY;AACnD,KAAG,cAAc,GAAG,SAAS,GAAG,YAAY,GAAG;AAC/C,MAAI,CAAC,GAAG,OAAQ,IAAG,SAAS;AAC5B,MAAI,CAAC,GAAG,QAAS,IAAG,UAAU;AAC9B,MAAI,CAAC,GAAG,OAAQ,IAAG,SAAS;AAC5B,MAAI,CAAC,GAAG,QAAS,IAAG,UAAU;AAE9B,KAAG,WAAW,GAAG,MAAM,OAAO,GAAG;AAEjC,KAAG,gBAAgB,MAAM,mBAAmB,EAAE,EAAE,GAAG,SAAS,MAAM;AACjE,OAAG,YAAY,MAAM,EAAE,UAAU,GAAG,cAAc,KAAK,CAAC;AAAA,EAEzD,CAAC;AACF;AAEA,eAAsB,UAAU,IAAI,OAAO;AAK1C,QAAM,UAAU,EAAE;AAClB,QAAM,MAAM,MAAM,QAAQ,EAAE;AAC5B,MAAI,QAAQ,eAAe,IAAI,KAAK;AACpC,MAAI,SAAS,MAAM,OAAO;AAE1B,KAAG,cAAc,GAAG,SAAS,GAAG,YAAY,GAAG;AAE/C,KAAG,OAAO,UAAU,GAAG,EAAE,OAAO;AAEhC,QAAM,OAAO,MAAa,QAAQ,iBAAiB,GAAG;AACtD,MAAI,KAAK,MAAO,OAAM,KAAK;AAG3B,KAAG,QAAQ,WAAW,EAAE,KAAK,KAAK,GAAG,YAAY,CAAC;AAElD,aAAW,KAAK,KAAK,OAAO;AAC3B,UAAM,MAAM,GAAG,OACb,OAAO,GAAG,EACV,KAAK,aAAa,eAAe,EAAE,OAAO,MAAM,GAAG,SAAS,GAAG,EAC/D,OAAO,OAAO,EACd,KAAK,SAAS,EAAE,KAAK,EACrB,KAAK,UAAU,GAAG,SAAS,EAC3B,KAAK,cAAc,EAAE,GAAG;AAAA,EAC3B;AAEA,KAAG,SAAS,UAAU,GAAG,EAAE,OAAO;AAElC,MAAI,KAAK,QAAQ;AAChB,UAAM;AAAA,EAEP;AAEA,MAAI,KAAK,QAAQ,QAAW;AAC3B,OAAG,MAAM,MAAM,KAAK;AACpB,OAAG,MAAM,MAAM,KAAK;AAAA,EACrB;AAGA,QAAM,QAAQ,OAAY,EACxB,OAAO,CAAC,GAAG,MAAM,KAAK,GAAG,MAAM,GAAG,CAAC,EACnC,MAAM,CAAC,GAAG,WAAW,CAAC,CAAC;AAEzB,QAAM,OACJ,SAAS,EACT,MAAM,KAAK,EACX,WAAW,CAAC,GAAG,MAAM,KAAK,GAAG,MAAM,GAAG,CAAC;AAEzC,MAAI,GAAG,cAAc;AACpB,SAAK,WAAW,OAAS,GAAG,CAAC;AAAA,EAC9B;AAEA,EAAO,UAAU;AAAA,IAChB,MAAM,GAAG,SAAS,KAAK,IAAI;AAAA,IAC3B,OAAO;AAAA,IACP,UAAU;AAAA,EACX,CAAC;AACF;AAEO,SAAS,kBAAkB,IAAI,OAAO,QAAQ,QAAQ;AAE5D,QAAM,SAAS;AAAA,IACd,QAAQ,CAAC;AAAA,IACT,QAAQ,CAAC;AAAA,IACT,SAAS,CAAC;AAAA,IACV,SAAS,CAAC;AAAA;AAAA;AAAA,IAIV,SAAS,CAAC;AAAA;AAAA,IAGV,cAAc,CAAC;AAAA,EAChB;AAGA;AACC,UAAM,MAAM,OAAO,OAAO,KAAK,EAAE,MAAM,iBAAiB,MAAM;AAC9D,QAAI,OAAO,MAAM,EAAE,KAAK,oBAAoB;AAC5C,QACE,OAAO,OAAO,EACd,KAAK,QAAQ,CAAC,EACd,SAAS,SAAS,GAAG,SAAS,EAC9B,GAAG,SAAS,WAAS;AACrB,UAAI,MAAM,QAAQ,QAAS;AAC3B,YAAM,IAAI,MAAM,OAAO;AACvB,UAAI,KAAK,GAAI;AACb,YAAM,IAAI,OAAO,SAAS,CAAC;AAC3B,UAAI,OAAO,MAAM,CAAC,KAAK,KAAK,GAAG;AAC9B,cAAM,uCAAuC;AAC7C;AAAA,MACD;AACA,SAAG,YAAY;AACf,aAAc,UAAU,MAAM;AAAA,IAC/B,CAAC;AAAA,EACH;AAGA,SAAO,OAAO,MAAM,OAAO,OAAO,KAAK,EAAE,MAAM,iBAAiB,MAAM;AACtE,SAAO,OAAO,MAAM,OAAO,OAAO,IAChC,OAAO,MAAM,EACb,KAAK,sBAAsB,EAC3B,MAAM,iBAAiB,MAAM;AAC/B,SAAO,OAAO,IACZ,OAAO,OAAO,EACd,KAAK,QAAQ,OAAO,EACpB,SAAS,SAAgB,QAAQ,GAAG,MAAM,CAAC,EAC3C,GAAG,UAAU,WAAS;AACtB,OAAG,SAAS,MAAM,OAAO;AACzB,WAAc,UAAU,MAAM;AAAA,EAC/B,CAAC;AAGF,SAAO,OAAO,MAAM,OAAO,OAAO,KAAK,EAAE,MAAM,iBAAiB,MAAM;AACtE,SAAO,OAAO,MAAM,OAAO,OAAO,IAChC,OAAO,MAAM,EACb,KAAK,sBAAsB,EAC3B,MAAM,iBAAiB,MAAM;AAC/B,SAAO,OAAO,IACZ,OAAO,OAAO,EACd,KAAK,QAAQ,OAAO,EACpB,SAAS,SAAgB,QAAQ,GAAG,MAAM,CAAC,EAC3C,GAAG,UAAU,WAAS;AACtB,OAAG,SAAS,MAAM,OAAO;AACzB,WAAc,UAAU,MAAM;AAAA,EAC/B,CAAC;AAEF,MAAI,CAAC,GAAG,MAAM,MAAM;AAEnB,WAAO,QAAQ,MAAM,OAAO,OAAO,KAAK,EAAE,MAAM,iBAAiB,MAAM;AACvE,WAAO,QAAQ,MAAM,OAAO,QAAQ,IAClC,OAAO,MAAM,EACb,KAAK,eAAe,EACpB,MAAM,iBAAiB,MAAM;AAC/B,WAAO,QAAQ,IACb,OAAO,OAAO,EACd,KAAK,QAAQ,OAAO,EACpB,SAAS,SAAgB,QAAQ,GAAG,OAAO,CAAC,EAC5C,GAAG,UAAU,WAAS;AACtB,SAAG,UAAU,MAAM,OAAO;AAC1B,aAAc,UAAU,OAAO;AAAA,IAChC,CAAC;AAEF,WAAO,QAAQ,MAAM,OAAO,OAAO,KAAK,EAAE,MAAM,iBAAiB,MAAM;AACvE,WAAO,QAAQ,MAAM,OAAO,QAAQ,IAClC,OAAO,MAAM,EACb,KAAK,eAAe,EACpB,MAAM,iBAAiB,MAAM;AAC/B,WAAO,QAAQ,IACb,OAAO,OAAO,EACd,KAAK,QAAQ,OAAO,EACpB,SAAS,SAAgB,QAAQ,GAAG,OAAO,CAAC,EAC5C,GAAG,UAAU,WAAS;AACtB,SAAG,UAAU,MAAM,OAAO;AAC1B,aAAc,UAAU,OAAO;AAAA,IAChC,CAAC;AAAA,EACH;AAGA;AACC,UAAM,MAAM,OAAO,OAAO,KAAK,EAAE,MAAM,iBAAiB,MAAM;AAC9D,QAAI,OAAO,MAAM,EAAE,KAAK,qBAAqB;AAC7C,UAAM,KAAK,IAAI,OAAO,QAAQ;AAC9B,UAAM,QAAQ,GAAG,OAAO,QAAQ,EAAE,KAAK,WAAW;AAClD,UAAM,QAAQ,GAAG,OAAO,QAAQ,EAAE,KAAK,OAAO;AAC9C,UAAM,QAAQ,GAAG,OAAO,QAAQ,EAAE,KAAK,YAAY;AACnD,OAAG,GAAG,UAAU,WAAS;AACxB,YAAM,KAAK,MAAM,OAAO;AACxB,UAAI,MAAM,GAAG;AACZ,cAAM,MAAM,WAAW,MAAM;AAC7B,mBAAW,MAAM,WAAW,MAAM;AAClC,WAAG,MAAM,OAAO;AAChB,eAAc,UAAU,SAAS;AACjC;AAAA,MACD;AACA,UAAI,MAAM,GAAG;AACZ,cAAM,MAAM,WAAW,OAAO;AAC9B,mBAAW,MAAM,WAAW,MAAM;AAClC;AAAA,MACD;AACA,YAAM,MAAM,WAAW,MAAM;AAC7B,iBAAW,MAAM,WAAW,OAAO;AAAA,IACpC,CAAC;AACD,QAAI,aAAa,OAChB,YAAY;AACb,QAAI,GAAG,MAAM,MAAM;AAClB,YAAM,SAAS,YAAY,CAAC;AAAA,IAC7B,OAAO;AACN,UAAI,GAAG,MAAM,YAAY;AACxB,oBAAY;AACZ,cAAM,SAAS,YAAY,CAAC;AAAA,MAC7B,OAAO;AACN,qBAAa;AACb,cAAM,SAAS,YAAY,CAAC;AAAA,MAC7B;AAAA,IACD;AAEA,UAAM,QAAQ,IACZ,OAAO,KAAK,EACZ,MAAM,UAAU,MAAM,EACtB,MAAM,WAAW,aAAa,UAAU,MAAM;AAChD;AACC,YAAM,OAAO,MAAM,OAAO,KAAK;AAC/B,WACE,OAAO,MAAM,EACb,KAAK,WAAW,EAChB,MAAM,eAAe,SAAS,EAC9B,MAAM,aAAa,MAAM;AAC3B,YAAM,MAAM,KAAK,OAAO,OAAO,EAAE,KAAK,QAAQ,CAAC;AAC/C,UAAI,YAAY;AACf,YAAI,SAAS,SAAS,GAAG,MAAM,GAAG;AAAA,MACnC;AACA,YAAM,OAAO,MAAM,OAAO,KAAK;AAC/B,WACE,OAAO,MAAM,EACb,KAAK,WAAW,EAChB,MAAM,eAAe,SAAS,EAC9B,MAAM,aAAa,MAAM;AAC3B,YAAM,MAAM,KAAK,OAAO,OAAO,EAAE,KAAK,QAAQ,CAAC;AAC/C,UAAI,YAAY;AACf,YAAI,SAAS,SAAS,GAAG,MAAM,GAAG;AAAA,MACnC;AACA,WACE,OAAO,QAAQ,EACf,KAAK,KAAK,EACV,MAAM,eAAe,KAAK,EAC1B,GAAG,SAAS,MAAM;AAClB,cAAM,KAAK,IAAI,SAAS,OAAO;AAC/B,YAAI,MAAM,IAAI;AACb;AAAA,QACD;AACA,cAAM,KAAK,OAAO,WAAW,EAAE;AAC/B,YAAI,OAAO,MAAM,EAAE,GAAG;AACrB,gBAAM,mBAAmB;AACzB;AAAA,QACD;AACA,cAAM,KAAK,IAAI,SAAS,OAAO;AAC/B,YAAI,MAAM,IAAI;AACb;AAAA,QACD;AACA,cAAM,KAAK,OAAO,WAAW,EAAE;AAC/B,YAAI,OAAO,MAAM,EAAE,GAAG;AACrB,gBAAM,mBAAmB;AACzB;AAAA,QACD;AACA,eAAO,GAAG,MAAM;AAChB,eAAO,GAAG,MAAM;AAChB,WAAG,MAAM,MAAM;AACf,WAAG,MAAM,MAAM;AACf,eAAc,UAAU,UAAU;AAAA,MACnC,CAAC;AAAA,IACH;AAEA,UAAM,aAAa,IACjB,OAAO,KAAK,EACZ,MAAM,cAAc,KAAK,EACzB,MAAM,WAAW,YAAY,UAAU,MAAM;AAC/C;AACC,iBACE,OAAO,MAAM,EACb,KAAK,kBAAkB,EACvB,MAAM,eAAe,SAAS,EAC9B,MAAM,aAAa,MAAM;AAC3B,YAAM,QAAQ,WAAW,OAAO,OAAO,EAAE,KAAK,QAAQ,CAAC;AACvD,UAAI,WAAW;AACd,cAAM,SAAS,SAAS,GAAG,MAAM,UAAU;AAAA,MAC5C;AACA,YAAM,gBAAgB,OAAK;AAC1B,YAAI,KAAK,GAAI;AACb,cAAM,IAAI,OAAO,SAAS,CAAC;AAC3B,YAAI,OAAO,MAAM,CAAC,KAAK,KAAK,KAAK,IAAI,KAAK;AACzC,gBAAM,iDAAiD;AACvD;AAAA,QACD;AACA,eAAO,GAAG,MAAM;AAChB,WAAG,MAAM,aAAa;AACtB,eAAc,UAAU,eAAe;AAAA,MACxC;AACA,YAAM,GAAG,SAAS,WAAS;AAC1B,YAAI,MAAM,QAAQ,QAAS;AAC3B,sBAAc,MAAM,SAAS,OAAO,CAAC;AAAA,MACtC,CAAC;AACD,iBACE,OAAO,QAAQ,EACf,KAAK,KAAK,EACV,MAAM,eAAe,KAAK,EAC1B,GAAG,SAAS,MAAM;AAClB,sBAAc,MAAM,SAAS,OAAO,CAAC;AAAA,MACtC,CAAC;AAAA,IACH;AAAA,EACD;AAGA;AACC,WAAO,QAAQ,MAAM,OAAO,OAAO,KAAK,EAAE,MAAM,iBAAiB,MAAM;AACvE,WAAO,QAAQ,IAAI,OAAO,MAAM,EAAE,KAAK,sBAAsB;AAC7D,UAAM,IAAI,OAAO,QAAQ,IAAI,OAAO,QAAQ,EAAE,GAAG,UAAU,WAAS;AACnE,YAAM,IAAI,MAAM,OAAO;AACvB,UAAI,KAAK,GAAG;AACX,eAAO,GAAG;AAAA,MACX,OAAO;AACN,WAAG,gBAAgB,OAAO,SAAS,MAAM,OAAO,QAAQ,CAAC,EAAE,SAAS;AAAA,MACrE;AACA,aAAO,KAAK,IAAW,UAAU,YAAmB,UAAU,UAAU;AAAA,IACzE,CAAC;AACD,QAAI,IAAI,EAAE,OAAO,QAAQ,EAAE,KAAK,IAAI;AACpC,QAAI,CAAC,GAAG,eAAe;AACtB,QAAE,SAAS,YAAY,CAAC;AAAA,IACzB;AACA,QAAI,EAAE,OAAO,QAAQ,EAAE,KAAK,GAAG;AAC/B,QAAI,GAAG,iBAAiB,GAAG;AAC1B,QAAE,SAAS,YAAY,CAAC;AAAA,IACzB;AACA,QAAI,EAAE,OAAO,QAAQ,EAAE,KAAK,IAAI;AAChC,QAAI,GAAG,iBAAiB,IAAI;AAC3B,QAAE,SAAS,YAAY,CAAC;AAAA,IACzB;AACA,QAAI,EAAE,OAAO,QAAQ,EAAE,KAAK,IAAI;AAChC,QAAI,GAAG,iBAAiB,IAAI;AAC3B,QAAE,SAAS,YAAY,CAAC;AAAA,IACzB;AACA,QAAI,EAAE,OAAO,QAAQ,EAAE,KAAK,IAAI;AAChC,QAAI,GAAG,iBAAiB,IAAI;AAC3B,QAAE,SAAS,YAAY,CAAC;AAAA,IACzB;AAAA,EACD;AAGA,SAAO,aAAa,MAAM,OAAO,OAAO,KAAK;AAE7C;AACC,UAAM,KAAK,KAAK,OAAO,EAAE,SAAS;AAClC,UAAM,QAAQ,OAAO,aAAa,IAChC,OAAO,OAAO,EACd,KAAK,QAAQ,UAAU,EACvB,KAAK,MAAM,EAAE;AACf,QAAI,CAAC,GAAG,UAAU,SAAS;AAC1B,YAAM,SAAS,WAAW,CAAC;AAAA,IAC5B;AACA,WAAO,aAAa,IAClB,OAAO,OAAO,EACd,KAAK,2BAA2B,EAChC,KAAK,OAAO,EAAE;AAEhB,UAAM,SAAS,OAAO,aAAa,IACjC,OAAO,KAAK,EACZ,MAAM,UAAU,mBAAmB,EACnC,MAAM,WAAW,GAAG,UAAU,UAAU,SAAS,OAAO;AAC1D,WAAO,OAAO,MAAM,EAAE,KAAK,2BAA2B;AACtD,UAAM,cAAc,OAClB,OAAO,OAAO,EACd,KAAK,QAAQ,QAAQ,EACrB,MAAM,SAAS,MAAM,EACrB,SAAS,SAAS,GAAG,UAAU,YAAY,EAC3C,GAAG,SAAS,WAAS;AACrB,UAAI,MAAM,QAAQ,WAAW,MAAM,QAAQ,cAAe;AAC1D,YAAM,IAAI,MAAM,OAAO;AACvB,UAAI,KAAK,GAAG;AAEX;AAAA,MACD;AACA,SAAG,UAAU,eAAe;AAC5B,aAAc,UAAU,eAAe;AAAA,IACxC,CAAC;AACF,WACE,OAAO,KAAK,EACZ,KAAK,0BAA0B,EAC/B,MAAM,aAAa,MAAM,EACzB,MAAM,SAAS,SAAS;AAC1B,UAAM,GAAG,UAAU,WAAS;AAC3B,UAAI,MAAM,OAAO,SAAS;AACzB,QAAO,OAAO,MAAM;AACpB,eAAO,GAAG,UAAU;AACpB,oBAAY,SAAS,SAAS,GAAG,UAAU,YAAY;AACvD,eAAc,UAAU,eAAe;AACvC;AAAA,MACD;AACA,MAAO,UAAU,MAAM;AACvB,SAAG,UAAU,UAAU;AACvB,aAAc,UAAU,cAAc;AAAA,IACvC,CAAC;AAAA,EACF;AACA,SAAO;AACR;AAEA,SAAS,eAAe,IAAI,OAAO;AAKlC,MAAI,QAAQ,MAAM,YAAY,EAAE;AAChC,MAAI,MAAM,OAAO;AAIhB,UAAM,IAAI,MAAM,CAAC;AACjB,MAAE,gBAAgB,MAAM,MAAM;AAC9B,aAAS,IAAI,GAAG,IAAI,MAAM,QAAQ,KAAK;AACtC,YAAM,KAAK,MAAM,CAAC;AAClB,QAAE,SAAS,GAAG,QAAQ,MAAM;AAC5B,QAAE,QAAQ,KAAK,IAAI,EAAE,OAAO,GAAG,KAAK;AACpC,QAAE,OAAO,KAAK,IAAI,EAAE,MAAM,GAAG,IAAI;AAAA,IAClC;AACA,YAAQ,CAAC,CAAC;AAAA,EACX;AAGA,MAAI,OAAO;AACX,aAAW,KAAK,OAAO;AACtB,MAAE,OAAO;AACT,YAAQ,EAAE,QAAQ,MAAM;AAAA,EACzB;AAEA,MAAI,MAAM,UAAU,UAAU,GAAG,UAAU,QAAQ;AAKlD,eAAW,KAAK,MAAM,WAAW;AAChC,YAAM,KAAK;AAAA,QACV,KAAK,EAAE;AAAA,QACP,OAAO,EAAE;AAAA,QACT,MAAM,EAAE;AAAA,QACR,OAAO,EAAE;AAAA,QACT,QAAQ,EAAE;AAAA,QACV;AAAA,MACD,CAAC;AACD,cAAQ,EAAE,QAAQ,EAAE;AAAA,IACrB;AAAA,EACD;AACA,SAAO;AACR;",
-  "names": []
-}

package/dist/block.tk.bigwig.ui-3KMMZX2M.js

@@ -1,202 +0,0 @@
-import {
-  isURL,
-  makeBtn,
-  makeGenomeDropDown,
-  makePrompt,
-  makeResetBtn,
-  makeTextAreaInput,
-  makeTextInput
-} from "./chunk-5EBRF6Z7.js";
-import {
-  Tabs,
-  appear,
-  first_genetrack_tolist
-} from "./chunk-BKW35Z4U.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-ETXOEP4N.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-5NI77Z3O.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-CJHNPYFQ.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-NR6WFCPF.js";
-import "./chunk-GN2A5NL5.js";
-import "./chunk-ME3HB3V6.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-6XKAOSQE.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// src/block.tk.bigwig.ui.js
-async function bigwigUI(genomes, holder) {
-  const wrapper = holder.append("div").style("margin", "5px 5px 5px 20px").style(
-    "font-family",
-    "'Lucida Sans', 'Lucida Sans Regular', 'Lucida Grande', 'Lucida Sans Unicode', Geneva, Verdana, sans-serif"
-  ).classed("sjpp-bw-ui", true).style("overflow", "hidden");
-  const obj = {};
-  makePrompt(wrapper, "Select Genome").style("font-size", "1.15em").style("padding", "10px 0px").style("color", "#003366");
-  genomeSelection(wrapper, genomes, obj);
-  makePrompt(wrapper, "Provide Data").style("font-size", "1.15em").style("padding", "20px 0px 10px 0px").style("color", "#003366");
-  const tabs_div = wrapper.append("div").style("margin-left", "40px");
-  makeTrackEntryTabs(tabs_div, obj);
-  const controlBtnsDiv = wrapper.append("div").style("display", "flex").style("align-items", "center").style("margin", "40px 0px 40px 130px");
-  submitButton(controlBtnsDiv, obj, holder, genomes);
-  makeResetBtn(controlBtnsDiv, obj, ".sjpp_bigwigUI_input").style("margin", "0px 20px 20px 0px");
-  infoSection(wrapper, obj);
-}
-function makeTrackEntryTabs(tabs_div, obj) {
-  const tabs = [
-    {
-      label: "Single Track",
-      callback: async (event, tab) => {
-        tab.contentHolder.style("border", "none").style("display", "block");
-        const singlediv = tab.contentHolder.append("div").style("border", "none");
-        appear(tab.contentHolder);
-        makePrompt(singlediv, "Name");
-        trackNameInput(singlediv, obj);
-        makePrompt(singlediv, "File Path");
-        trackFilePathInput(singlediv, obj);
-        delete tab.callback;
-      }
-    },
-    {
-      label: "Multiple Tracks",
-      callback: async (event, tab) => {
-        tab.contentHolder.style("border", "none").style("display", "block");
-        appear(tab.contentHolder);
-        tab.contentHolder.append("div").html(
-          '<p style="margin-left: 10px;">Enter one track per line in the following format: [track name],[path/to/file.bw or URL]</p><p style="margin-left: 20px; color: #7d7c7c;">e.g. BigWig Track, proteinpaint_demo/hg19/bigwig/file.bw</p>'
-        );
-        multiTrackInput(tab.contentHolder, obj);
-        delete tab.callback;
-      }
-    }
-  ];
-  new Tabs({ holder: tabs_div, tabs }).main();
-}
-async function genomeSelection(div, genomes, obj) {
-  const genome_div = div.append("div").style("margin-left", "40px");
-  const g = makeGenomeDropDown(genome_div, genomes).style("border", "1px solid rgb(138, 177, 212)");
-  obj.genomeselect = g.node();
-}
-function trackNameInput(div, obj) {
-  const track_div = div.append("div").style("margin-left", "10px");
-  const name = makeTextInput(track_div, "BigWig track").style("border", "1px solid rgb(138, 177, 212)").classed("sjpp_bigwigUI_input", true).on("keyup", async () => {
-    obj.trackname = name.property("value").trim();
-  });
-}
-function trackFilePathInput(div, obj) {
-  const track_div = div.append("div").style("margin-left", "10px");
-  const filepath = makeTextInput(track_div).style("border", "1px solid rgb(138, 177, 212)").classed("sjpp_bigwigUI_input", true).on("keyup", async () => {
-    obj.filepath = filepath.property("value").trim();
-    obj.tabInUse = "single";
-  });
-}
-function multiTrackInput(div, obj) {
-  const pasteTrack_div = div.append("div").style("display", "block");
-  const multi = makeTextAreaInput({ div: pasteTrack_div }).style("border", "1px solid rgb(138, 177, 212)").style("margin", "0px 0px 0px 20px").classed("sjpp_bigwigUI_input", true).on("keyup", async () => {
-    obj.multitrackdata = multi.property("value").trim();
-    obj.tabInUse = "multi";
-  });
-}
-function submitButton(div, obj, holder, genomes) {
-  const submit = makeBtn({
-    div,
-    text: "Submit"
-  });
-  submit.style("margin", "0px 20px 20px 60px").style("font-size", "16px").on("click", () => {
-    const runpp_arg = {
-      holder: holder.append("div").style("margin", "20px").node(),
-      /** Do not use window.location.origin. See comment: line 180, renderContent(), client/appdrawer/adSandbox.js*/
-      host: sessionStorage.getItem("hostURL")
-    };
-    const bigwig_arg = validateInput(obj, genomes);
-    if (!bigwig_arg) return;
-    select_default(".sjpp-bw-ui").remove();
-    runproteinpaint(Object.assign(runpp_arg, bigwig_arg));
-  });
-}
-function validateInput(obj, genomes) {
-  if (!obj.filepath && !obj.multitrackdata) {
-    alert("Provide data for either a single track or multiple tracks.");
-    return;
-  }
-  let genome = obj.genomeselect.options[obj.genomeselect.selectedIndex].text;
-  const runpp_args = {
-    block: true,
-    nobox: 1,
-    noheader: true,
-    genome,
-    tracks: []
-  };
-  const g = genomes[genome];
-  if (obj.tabInUse == "single") {
-    let file, url;
-    if (isURL(obj.filepath)) url = obj.filepath;
-    else file = obj.filepath;
-    const tk = {
-      type: "bigwig",
-      name: obj.trackname || "BigWig track",
-      file,
-      url,
-      scale: {
-        auto: 1
-      }
-    };
-    runpp_args.tracks.push(tk);
-    first_genetrack_tolist(g, runpp_args.tracks);
-    return runpp_args;
-  }
-  if (obj.tabInUse == "multi") {
-    for (const data of obj.multitrackdata.split(/[\r\n]/)) {
-      const line = data.split(",");
-      if (line[0] && !line[1]) alert("Problem with submission. Are commas between the track names and filepaths?");
-      if (line[0] && line[1]) {
-        let file, url;
-        const tmp = line[1].trim();
-        if (isURL(tmp)) url = tmp;
-        else file = tmp;
-        const tk = {
-          type: "bigwig",
-          name: line[0].trim(),
-          file,
-          url,
-          scale: {
-            auto: 1
-          },
-          iscustom: true
-        };
-        runpp_args.tracks.push(tk);
-      }
-    }
-    first_genetrack_tolist(g, runpp_args.tracks);
-    return runpp_args;
-  }
-  throw "unknown option";
-}
-function infoSection(div) {
-  div.append("div").style("margin", "10px").style("opacity", "0.65").style("line-height", "1.5").html(`<ul>
-                <li>
-                    <a href=https://docs.google.com/document/d/1ZnPZKSSajWyNISSLELMozKxrZHQbdxQkkkQFnxw6zTs/edit#heading=h.6spyog171fm9 target=_blank>BigWig track documentation</a>
-                </li>
-                <li>
-                    <a href=https://proteinpaint.stjude.org/ppdemo/hg19/bigwig/file.bw target=_blank>Example file</a>
-                </li>
-                <li>
-                    Please see the <a href=https://genome.ucsc.edu/goldenpath/help/bigWig.html target=_blank>UCSC documention</a> for information on bigWig file formatting.
-                </li>
-            </ul>`);
-}
-export {
-  bigwigUI
-};
-//# sourceMappingURL=block.tk.bigwig.ui-3KMMZX2M.js.map