@sjcrh/proteinpaint-client 2.219.1 → 2.220.0

package/dist/chunk-DKPAOVJH.js

@@ -1,243 +0,0 @@
-import {
-  keyupEnter
-} from "./chunk-BKW35Z4U.js";
-import {
-  get_bin_label,
-  get_bin_range_equation
-} from "./chunk-CJHNPYFQ.js";
-import {
-  toStoredUnit,
-  toUserUnit
-} from "./chunk-W5J3LTYS.js";
-
-// termsetting/handlers/NumCustomBinEditor.ts
-var NumCustomBinEditor = class {
-  constructor(editHandler) {
-    this.dom = {};
-    this.editHandler = editHandler;
-    this.opts = editHandler.opts;
-    this.tw = editHandler.tw;
-    this.termsetting = editHandler.termsetting;
-  }
-  /* bin boundaries are stored in the term's own unit but entered and shown in its user-facing one.
-  both are identity functions unless the term declares valueConversion{} */
-  toDisplay(v) {
-    return toUserUnit(v, this.tw.term);
-  }
-  toStored(v) {
-    return toStoredUnit(v, this.tw.term);
-  }
-  async render(div) {
-    this.tw = this.editHandler.tw;
-    const isRemounting = !!this.dom.inputsDiv && this.editHandler.dom.binsDiv?.node().contains(this.dom.inputsDiv.node());
-    if (!isRemounting) this.q = this.getDefaultQ();
-    await this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-    if (isRemounting) return;
-    if (this.dom.inputsDiv) {
-      this.dom.inputsDiv.remove();
-      delete this.dom.inputsDiv;
-    }
-    this.dom.inputsDiv = div.append("div").style("display", "flex").style("width", "100%");
-    this.renderCustomBinInputs();
-  }
-  getBoundaryOpts() {
-    return {
-      values: this.q.lst.slice(1).map((bin) => ({ x: this.toDisplay(bin.startunbounded ? bin.stop : bin.start), isDraggable: true })),
-      // the dragged value arrives in display units, matching what the textarea holds
-      callback: (d, value) => {
-        const boundaryValues = this.q.lst.slice(1).map((d2) => "start" in d2 ? this.toDisplay(d2.start) : "");
-        boundaryValues[d.index] = value;
-        this.dom.customBinBoundaryInput.property("value", boundaryValues.join("\n"));
-        this.handleInputChange("drag");
-        return 0;
-      }
-    };
-  }
-  getDefaultQ() {
-    if (this.tw.q.mode == "discrete" && this.tw.q.type == "custom-bin") {
-      const copy = JSON.parse(JSON.stringify(this.tw.q));
-      copy.lst.forEach((bin) => {
-        if (!bin.label) bin.label = get_bin_label(bin, this.tw.q, this.tw.term.valueConversion);
-        bin.range = get_bin_range_equation(bin, this.tw.q, this.tw.term.valueConversion);
-      });
-      return copy;
-    }
-    const { min, max } = this.editHandler.handler.density_data;
-    const defaultCustomBoundary = (
-      /* when no sample is annotated by this term,
-      minvalue and maxvalue are both null
-      setting defaultCustomBoundary to arbitrary "0" will allow existing UI to work
-      but remains to be evaluated if is really okay to use 0
-      */
-      !Number.isFinite(min) || !Number.isFinite(max) ? 0 : (
-        // minvalue and maxvalue is valid number
-        max != min ? min + (max - min) / 2 : max
-      )
-    );
-    const firstBin = {
-      startunbounded: true,
-      startinclusive: false,
-      stopinclusive: false,
-      stop: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
-    };
-    const lastBin = {
-      stopunbounded: true,
-      startinclusive: true,
-      stopinclusive: false,
-      start: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
-    };
-    return {
-      mode: "discrete",
-      type: "custom-bin",
-      lst: [
-        // Type '{ label: any; range: any; startunbounded: boolean; startinclusive: boolean; stopinclusive: boolean; stop: number; }' is not assignable to type 'StartUnboundedBin | FullyBoundedBin'.
-        // Property 'start' is missing in type '{ label: any; range: any; startunbounded: boolean; startinclusive: boolean; stopinclusive: boolean; stop: number; }' but required in type 'FullyBoundedBin'.
-        {
-          ...firstBin,
-          label: get_bin_label(firstBin, this.tw.q, this.tw.term.valueConversion),
-          range: get_bin_range_equation(firstBin, this.tw.q, this.tw.term.valueConversion)
-        },
-        {
-          ...lastBin,
-          label: get_bin_label(lastBin, this.tw.q, this.tw.term.valueConversion),
-          range: get_bin_range_equation(lastBin, this.tw.q, this.tw.term.valueConversion)
-        }
-        //satisfies StopUnboundedBin
-      ]
-    };
-  }
-  /******************* Functions for Numerical Custom size bins *******************/
-  renderCustomBinInputs() {
-    const q = this.q;
-    const boundaryDiv = this.dom.inputsDiv.append("div").style("margin-right", "20px");
-    this.dom.rangeAndLabelDiv = this.dom.inputsDiv.append("div");
-    boundaryDiv.append("div").style("margin-bottom", "5px").style("color", "rgb(136, 136, 136)").text("Bin boundaries");
-    this.dom.customBinBoundaryInput = boundaryDiv.append("textarea").style("width", "100px").style("height", "70px").text(
-      q.lst.slice(1).map((d) => "start" in d ? this.toDisplay(d.start) : "").join("\n")
-    ).on("change", () => this.handleInputChange()).on("keyup", async (event) => {
-      if (!keyupEnter(event) && event.key != 8 && event.key != "Enter") return;
-      if (!this.dom.inputsDiv.selectAll("input").node().value) return;
-      this.handleInputChange();
-    });
-    boundaryDiv.append("div").style("font-size", ".6em").style("margin-left", "1px").style("color", "#858585").html("Enter numeric values </br>seperated by ENTER");
-    this.renderBoundaryInputDivs();
-  }
-  renderBoundaryInputDivs() {
-    const data = this.q.lst;
-    const holder = this.dom.rangeAndLabelDiv;
-    holder.selectAll("*").remove();
-    const grid = holder.append("div").style("display", "grid").style("grid-template-columns", "auto auto").style("column-gap", "20px").style("align-items", "center");
-    grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Range");
-    grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Bin label");
-    for (const d of data) {
-      grid.append("div").attr("name", "range").html(d.range);
-      grid.append("div").append("input").attr("type", "text").style("margin", "2px 0px").property("value", d.label).on("change", function() {
-        d.label = this.value;
-      });
-    }
-    this.dom.customBinRanges = this.dom.inputsDiv.selectAll('div[name="range"]').data(data);
-    this.dom.customBinLabelInput = this.dom.inputsDiv.selectAll("input").data(data);
-  }
-  handleInputChange(eventType = "") {
-    const self = this.tw;
-    const inputs = this.dom.inputsDiv.selectAll("input");
-    inputs.property("value", "");
-    const data = this.processCustomBinInputs();
-    if (data == void 0) {
-      return;
-    }
-    if (self.q.hiddenValues) this.tw.q.hiddenValues = self.q.hiddenValues;
-    if (this.binsChanged(data, this.q.lst)) {
-      this.q.lst = data;
-    }
-    this.renderBoundaryInputDivs();
-    if (eventType != "drag") this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-  }
-  binsChanged(data, qlst) {
-    if (data.length != qlst.length) return true;
-    if (Object.keys(data[0]).length !== Object.keys(qlst[0]).length) return true;
-    for (const [i, bin] of qlst.entries()) {
-      for (const k of Object.keys(bin)) {
-        if (bin[k] && bin[k] !== data[i][k]) {
-          return true;
-        }
-      }
-    }
-    return false;
-  }
-  processCustomBinInputs() {
-    const self = this.termsetting;
-    const startinclusive = this.editHandler.boundaryInclusion == "startinclusive";
-    const stopinclusive = this.editHandler.boundaryInclusion == "stopinclusive";
-    const inputs = this.dom.inputsDiv.node().querySelectorAll("input");
-    const inputData = this.dom.customBinBoundaryInput.property("value").split("\n").filter((d) => d != "" && !isNaN(d));
-    const trackBins = new Set(inputData);
-    if (!trackBins.size) return this.tw.q.lst;
-    const sortedBins = Array.from(trackBins).map((v) => this.toStored(Number(v))).sort((a, b) => a - b);
-    const data = [
-      // first bin: StartUnbounded type
-      {
-        startunbounded: true,
-        stop: sortedBins[0],
-        startinclusive: false,
-        stopinclusive,
-        label: inputs[0].value
-      }
-    ];
-    if (!data[0].label) data[0].label = get_bin_label(data[0], self.q, self.term.valueConversion);
-    if (!data[0].range) data[0].range = get_bin_range_equation(data[0], self.q, self.term.valueConversion);
-    for (const [i, d] of sortedBins.entries()) {
-      let bin;
-      const label = inputs[i + 1]?.value || "";
-      if (i !== trackBins.size - 1) {
-        bin = {
-          start: +d,
-          startinclusive,
-          stopinclusive,
-          stop: sortedBins[i + 1],
-          label
-          //range: ''
-        };
-      } else {
-        bin = {
-          start: +d,
-          startinclusive,
-          stopinclusive: false,
-          stopunbounded: true,
-          label
-          //range: ''
-        };
-      }
-      if (bin.label === "" || bin.label === void 0) bin.label = get_bin_label(bin, self.q, self.term.valueConversion);
-      if (bin.range === "" || bin.range === void 0)
-        bin.range = get_bin_range_equation(bin, self.q, self.term.valueConversion);
-      data.push(bin);
-    }
-    return data;
-  }
-  getEditedQ(destroyDom = true) {
-    const lst = this.processCustomBinInputs();
-    if (destroyDom) {
-      for (const name of Object.keys(this.dom)) {
-        this.dom[name].remove();
-        delete this.dom[name];
-      }
-    }
-    return {
-      mode: "discrete",
-      type: "custom-bin",
-      lst
-    };
-  }
-  undoEdits() {
-    this.q = this.getDefaultQ();
-    this.dom.inputsDiv.selectAll("*").remove();
-    this.renderCustomBinInputs();
-    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-  }
-};
-
-export {
-  NumCustomBinEditor
-};
-//# sourceMappingURL=chunk-DKPAOVJH.js.map

package/dist/chunk-DRESQF33.js

@@ -1,38 +0,0 @@
-import {
-  plotColor
-} from "./chunk-ME3HB3V6.js";
-
-// plots/violin/settings/defaults.ts
-function getDefaultViolinSettings(app, overrides = {}) {
-  const defaults = {
-    orientation: "horizontal",
-    rowlabelw: 250,
-    brushRange: null,
-    //object with start and end if there is a brush selection
-    svgw: 500,
-    // span length of a plot/svg, not including margin
-    datasymbol: "rug",
-    radius: 10,
-    axisHeight: 60,
-    rightMargin: 50,
-    lines: [],
-    isLogScale: false,
-    // false: linear scale, true: log scale
-    rowSpace: 10,
-    medianLength: 7,
-    medianColor: "#FF0000",
-    medianThickness: 3,
-    ticks: 15,
-    defaultColor: plotColor,
-    method: 0,
-    orderByMedian: false,
-    showStats: true,
-    showAssociationTests: true
-  };
-  return Object.assign(defaults, overrides);
-}
-
-export {
-  getDefaultViolinSettings
-};
-//# sourceMappingURL=chunk-DRESQF33.js.map

package/dist/chunk-DXM5MQCZ.js

@@ -1,382 +0,0 @@
-import {
-  Menu
-} from "./chunk-CNFTQSNE.js";
-import {
-  mclass
-} from "./chunk-ME3HB3V6.js";
-import {
-  copyMerge
-} from "./chunk-HBNB5TRH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-
-// plots/matrix/matrix.sorterUi.js
-var alphabet = `ABCDEFGHIJKLMNOPQRSTUVWXYZ`.split("");
-function getSorterUi(opts) {
-  const { controls, holder } = opts;
-  const parent = controls.parent;
-  const s = structuredClone(parent.config.settings.matrix);
-  const l = s.controlLabels;
-  const tip = new Menu({ padding: "", parent_menu: parent.app.tip?.d.node() });
-  let input, theads = [], sectionData, dragged = {};
-  const self = {
-    dom: { tip },
-    opts,
-    highlightColor: "none",
-    label: `Sort ${l.Samples}`,
-    title: `Set how to sort ${l.samples}`,
-    type: "custom",
-    expanded: opts.expanded || false,
-    expandedSection: opts.expandedSection || "",
-    init(overrides = {}, _opts = {}) {
-      tip.clear().hide();
-      if (parent.config.settings.matrix != s) copyMerge(s, parent.config.settings.matrix);
-      if (s !== overrides) copyMerge(s, overrides);
-      self.settings = s;
-      self.activeOption = structuredClone(s.sortOptions[s.sortSamplesBy]);
-      sectionData = [
-        // TODO: add an advanced menu section here for sortBySampleAncestry = 'first'
-        {
-          label: `For each selected row, sort ${l.samples} by matching data`,
-          notDraggable: true,
-          tiebreakers: [],
-          handler: handleSelectedTerms
-        },
-        ...self.activeOption.sortPriority,
-        {
-          label: `Sort ${l.samples} by name, alphabetically`,
-          notDraggable: true,
-          tiebreakers: []
-        }
-      ];
-      Object.assign(opts, _opts);
-      opts.holder.selectAll("*").remove();
-      const topDiv = opts.holder.append("div").style("text-align", "right");
-      topDiv.append("button").html("Apply").on("click", apply);
-      topDiv.append("button").html("Reset").on("click", (event, d) => self.init());
-      const table = opts.holder.append("table");
-      const tr = table.append("thead");
-      tr.append("th").html("Priority").style("text-align", "left").style("max-width", "0px");
-      tr.append("th").html("Description");
-      tr.append("th").html("Action");
-      let i = 0, j = 0;
-      for (const sd of sectionData) {
-        const hasTbOrder = sd.tiebreakers?.[0]?.order || sd.handler;
-        const thead = table.append("thead").datum(sd).property("draggable", !sd.notDraggable).attr("droppable", true).on("dragstart", trackDraggedSection).on("dragover", highlightSection).on("dragleave", unhighlightSection).on("drop", adjustSortPriority);
-        theads.push(select_default(thead));
-        const tr2 = thead.append("tr").style("background-color", "#eee").on("mouseover", undoMouseoverHighlights);
-        tr2.append("th").style("padding", "5px").style("vertical-align", "top").style("font-weight", 400).html(alphabet[j++]).on("click", hasTbOrder ? toggleSection : null);
-        const td2 = tr2.append("th").style("padding", "5px").style("vertical-align", "top").style("text-align", "left").style("cursor", hasTbOrder ? "pointer" : "").on("click", hasTbOrder ? toggleSection : null);
-        td2.append("span").style("margin-right", "12px").style("font-weight", 400).html(sd.label);
-        tr2.append("th").style("padding", "5px").style("vertical-align", "top").style("text-align", "center").style("font-weight", 400).style("cursor", hasTbOrder ? "pointer" : "").append("span").html(hasTbOrder ? "Details" : " ").on("click", hasTbOrder ? toggleSection : null);
-        const tbody = table.append("tbody").datum(sd).style("display", self.expandedSection == "all" || self.expandedSection == sd.label ? "" : "none");
-        for (const tb of sd.tiebreakers) {
-          if (tb.skip) continue;
-          if (!sd.types?.includes("geneVariant")) {
-            continue;
-          }
-          const tr3 = tbody.append("tr").on("mouseover", undoMouseoverHighlights).datum(tb).attr("draggable", !tb.disabled && sd.types?.length !== 0).attr("droppable", !tb.disabled && sd.types?.length !== 0).on("dragstart", trackDraggedTieBreaker).on("dragover", highlightTieBreaker).on("dragleave", unhighlightTieBreaker).on("drop", adjustTieBreakers);
-          if (!tb.disabled) i++;
-          const td1 = tr3.append("td").attr(
-            "title",
-            tb.disabled ? `This tiebreaker is currently not being used to sort ${l.cases}. Check the box to use.` : `The number indicates the order in which this tiebreaker is used. Unched the box to skip.`
-          ).datum(tb);
-          td1.style("padding", "5px").style("vertical-align", "top").style("text-align", "center");
-          td1.append("span").html(!tb.disabled ? i : "");
-          const td22 = tr3.append("td").style("opacity", tb.disabled ? 0.5 : 1).style("padding", "5px").style("vertical-align", "top").style("max-width", "500px");
-          td22.append("span").html(tb.label || "");
-          if (!tb.disabled) {
-            const label = td22.append("label");
-            label.append("span").html("<br>(use data list order ");
-            if (!tb.isOrdered) tb.isOrdered = false;
-            const checkbox = label.append("input").datum(tb).attr("type", "checkbox").property("checked", tb.isOrdered).style("vertical-align", "bottom").on("change", toggleTieBreakerIsOrdered);
-            label.append("span").html(")");
-            const order = tb.order;
-            td22.append("div").attr("class", "sjpp-matrix-sorter-ui-value").selectAll("div").data(
-              order.map((key, index) => ({
-                lstName: "order",
-                key,
-                cls: mclass[key],
-                tb,
-                dragstart: trackDraggedValue,
-                dragover: highlightValue,
-                dragleave: unhighlightValue,
-                drop: adjustValueOrder,
-                filterByClass: s.filterByClass,
-                index
-              }))
-            ).enter().append("div").style("display", tb.isOrdered ? "block" : "inline-block").each(setValueDiv);
-            if (tb.notUsed?.length) {
-              const notUsed = td22.append("div");
-              notUsed.append("div").attr("data-testid", "sjpp-matrix-sorter-ui-hidden-add").style("display", "inline-block").style("padding", "5x").style("vertical-align", "top").style("padding", "3px 5px").style("cursor", "pointer").html(`+Add`).on("click", showNotUsedValues);
-            }
-          }
-          const td3 = tr3.append("td").style("text-align", "center").style("vertical-align", "top");
-          if (tb.mayToggle) {
-            td3.append("button").datum(tb).html(tb.disabled ? "Enable" : "Disable").on("click", toggleTieBreakerDisabled);
-          }
-        }
-        const lastTr = tbody.append("tr").attr("draggable", true).on("mouseover", undoMouseoverHighlights);
-        lastTr.append("td").html("&nbsp;");
-        const tdNew = lastTr.append("td").style("text-align", "left").html(sd.details && !sd.order?.length ? sd.details : "&nbsp;");
-        if (sd.handler) sd.handler(tdNew, lastTr, tbody);
-        lastTr.append("td").html("&nbsp;");
-      }
-    },
-    toggleSection,
-    trackDraggedSection,
-    highlightSection,
-    unhighlightSection,
-    adjustSortPriority,
-    trackDraggedTieBreaker,
-    highlightTieBreaker,
-    unhighlightTieBreaker,
-    adjustTieBreakers,
-    trackDraggedValue,
-    highlightValue,
-    unhighlightValue,
-    adjustValueOrder,
-    apply
-  };
-  function toggleSection(event, d = { label: "all" }) {
-    self.expandedSection = self.expandedSection === d.label ? "" : d.label;
-    self.expanded = !!self.expandedSection;
-    self.init();
-  }
-  function trackDraggedSection(event, d) {
-    dragged.type = "sortPriority";
-    dragged.data = d;
-    dragged.index = self.activeOption.sortPriority.indexOf(d);
-  }
-  function highlightSection(event, d) {
-    if (dragged.type != "sortPriority" || d == dragged.data) return;
-    event.preventDefault();
-    const i = self.activeOption.sortPriority.indexOf(d);
-    const borderSide = i < dragged.index ? "border-top" : i > dragged.index ? "border-bottom" : "";
-    if (!borderSide) return;
-    select_default(this).selectAll("th").style(borderSide, "2px solid blue");
-  }
-  function unhighlightSection(event, d) {
-    if (dragged.type != "sortPriority") return;
-    event.preventDefault();
-    select_default(this).selectAll("th").style("border", "none");
-  }
-  function adjustSortPriority(event, d) {
-    if (d == dragged.data) return;
-    const i = self.activeOption.sortPriority.indexOf(d);
-    const s2 = parent.config.settings.matrix;
-    self.activeOption.sortPriority.splice(dragged.index, 1);
-    self.activeOption.sortPriority.splice(i, 0, dragged.data);
-    self.init({
-      sortOptions: {
-        [s2.sortSamplesBy]: self.activeOption
-      }
-    });
-  }
-  function trackDraggedTieBreaker(event, d) {
-    dragged.type = "tiebreaker";
-    dragged.data = d;
-    dragged.sectionData = event.target.closest("tbody").__data__;
-    dragged.priorityIndex = self.activeOption.sortPriority.indexOf(dragged.sectionData);
-    dragged.index = dragged.sectionData.tiebreakers.indexOf(d);
-  }
-  function highlightTieBreaker(event, d) {
-    if (dragged.type != "tiebreaker" || d == dragged.data) return;
-    event.preventDefault();
-    const i = dragged.sectionData.tiebreakers.indexOf(d);
-    const borderSide = i < dragged.index ? "border-top" : i > dragged.index ? "border-bottom" : "";
-    if (!borderSide) return;
-    select_default(this).selectAll("td:nth-child(2)").style(borderSide, "2px solid blue");
-  }
-  function unhighlightTieBreaker(event, d) {
-    if (dragged.type != "tiebreaker") return;
-    event.preventDefault();
-    select_default(this).selectAll("td:nth-child(2)").style("border", "none");
-  }
-  function toggleTieBreakerIsOrdered(event, tb) {
-    event.stopPropagation();
-    tb.isOrdered = !tb.isOrdered;
-    self.init({
-      sortOptions: {
-        [s.sortSamplesBy]: self.activeOption
-      }
-    });
-  }
-  function toggleTieBreakerDisabled(event, tb) {
-    event.stopPropagation();
-    tb.disabled = !tb.disabled;
-    self.init({
-      sortOptions: {
-        [s.sortSamplesBy]: self.activeOption
-      }
-    });
-  }
-  function adjustTieBreakers(event, d) {
-    if (dragged.type != "tiebreaker" || d == dragged.data) return;
-    event.preventDefault();
-    const i = dragged.sectionData.tiebreakers.indexOf(d);
-    const s2 = parent.config.settings.matrix;
-    dragged.sectionData.tiebreakers.splice(dragged.index, 1);
-    dragged.sectionData.tiebreakers.splice(i, 0, dragged.data);
-    self.init({
-      sortOptions: {
-        [s2.sortSamplesBy]: self.activeOption
-      }
-    });
-  }
-  function setValueDiv(d) {
-    const title = [];
-    if (d.tb.notUsed?.includes(d.key)) title.push(`- Click on this label to include in used data values.`);
-    if (d.filterByClass[d.key])
-      title.unshift("- Click on the corresponding entry in the matrix legend or Mutation/CNV menus to unhide");
-    if (title.length) title.unshift(`To use this data value for sorting ${l.samples}:`);
-    const skipped = d.tb.notUsed?.includes(d.key);
-    const opacity = d.filterByClass[d.key] == "value" ? 0.5 : 1;
-    const div = select_default(this).attr("aria-label", title.length ? title.join("\n") : `Click to not use this data value to sort ${l.samples}`).attr("draggable", d.tb.isOrdered ? true : false).attr("droppable", d.tb.isOrdered ? true : false).style("width", "fit-content").style("margin-right", "10px").style("overflow", "hidden").style("white-space", "nowrap").style("opacity", opacity).style("cursor", "pointer").on("dragstart", d.dragstart).on("dragover", d.dragover).on("dragleave", d.dragleave).on("drop", d.drop).on("mouseenter", () => toggle.style("opacity", 1)).on("mouseleave", () => toggle.style("opacity", 0)).on("click", () => {
-      if (title.length) {
-        const cls = "sjpp-matrix-sorter-value-note";
-        div.selectAll(`.${cls}`).remove();
-        const note = div.append("div").attr("class", cls).style("max-width", "200px").style("padding", "5px");
-        note.html(title.join("<br>"));
-        if (d.filterByClass[d.key]) return;
-      }
-      const targetLstName = d.lstName == "order" ? "notUsed" : "order";
-      if (!d.tb[targetLstName]) d.tb[targetLstName] = [];
-      const targetLst = d.tb[targetLstName];
-      d.tb[d.lstName].splice(d.index, 1);
-      if (d.lstName == "order") targetLst.unshift(d.key);
-      else targetLst.push(d.key);
-      self.init({
-        sortOptions: {
-          [s.sortSamplesBy]: self.activeOption
-        }
-      });
-    });
-    div.append("div").style("display", "inline-block").style("cursor", "pointer").style("width", "12px").style("height", "12px").style("margin-right", "3px").style("background-color", d.cls.color);
-    div.append("span").style("cursor", "pointer").style("text-decoration", d.filterByClass[d.key] == "case" ? "line-through" : "").html(d.cls.label + (d.filterByClass[d.key] ? " (<i>not used since this value is hidden</i>)" : ""));
-    const toggle = div.append("div").style("display", "inline-block").style("width", "12px").style("cursor", "pointer").style("opacity", 0).style("color", d.lstName == "order" ? "red" : "green").html(d.lstName == "order" ? "&cross;" : "&check;");
-  }
-  function trackDraggedValue(event, d) {
-    event.stopPropagation?.();
-    dragged.type = "value";
-    dragged.data = d;
-    dragged.sectionData = event.target.closest("tbody").__data__;
-    dragged.priorityIndex = self.activeOption.sortPriority.indexOf(dragged.sectionData);
-    dragged.tiebreaker = event.target.closest("tr").__data__;
-    dragged.tbIndex = dragged.sectionData.tiebreakers.indexOf(dragged.priorityIndex);
-    dragged.order = dragged.tiebreaker.order;
-  }
-  function highlightValue(event, d) {
-    event.stopPropagation?.();
-    if (dragged.type != "value" || d == dragged.data) return;
-    if (d.tb != dragged.data.tb) return;
-    event.preventDefault();
-    const i = dragged.order.indexOf(d);
-    select_default(this).style("border", "2px solid blue");
-  }
-  function unhighlightValue(event, d) {
-    event.stopPropagation?.();
-    if (dragged.type != "value") return;
-    event.preventDefault();
-    select_default(this).style("border", "none");
-  }
-  function adjustValueOrder(event, d) {
-    event.stopPropagation?.();
-    if (dragged.type != "value" || d == dragged.data) return;
-    event.preventDefault();
-    const s2 = self.settings;
-    dragged.data.tb[dragged.data.lstName].splice(dragged.data.index, 1);
-    d.tb[d.lstName].splice(d.index, 0, dragged.data.key);
-    const j = s2.hiddenVariants.indexOf(dragged.data.key);
-    const hiddenVariants = structuredClone(s2.hiddenVariants);
-    const filterByClass = structuredClone(s2.filterByClass);
-    if (j != -1) {
-      hiddenVariants.splice(j, 1);
-      filterByClass[dragged.data.key] = false;
-    }
-    self.init({
-      hiddenVariants,
-      filterByClass,
-      sortOptions: {
-        [s2.sortSamplesBy]: self.activeOption
-      }
-    });
-  }
-  function showNotUsedValues(event, tb) {
-    event?.stopPropagation();
-    const availDiv = tip.clear().d.append("div").attr("data-testid", "sjpp-matrix-sorter-ui-hidden-vals").style("margin-top", "3px").style("vertical-align", "top").style("padding-left", "12px");
-    availDiv.selectAll("div").data(
-      tb.notUsed.map((key, index) => ({
-        lstName: "notUsed",
-        key,
-        cls: mclass[key],
-        tb,
-        dragstart: trackDraggedValue,
-        dragover: highlightValue,
-        dragleave: unhighlightValue,
-        drop: adjustValueOrder,
-        filterByClass: s.filterByClass,
-        index
-      }))
-    ).enter().append("div").style("display", "block").each(setValueDiv);
-    tip.showunder(event.target);
-  }
-  function apply() {
-    parent.app.tip?.hide();
-    parent.app.dispatch({
-      type: "plot_edit",
-      id: parent.id,
-      config: {
-        settings: {
-          matrix: {
-            sortOptions: {
-              [s.sortSamplesBy]: self.activeOption
-            }
-          }
-        }
-      }
-    });
-  }
-  function undoMouseoverHighlights() {
-  }
-  function handleSelectedTerms(td, tr) {
-    if (!parent.selectedTermsToSortAgainst?.length) {
-      td.html(`Click on a matrix row label and the left triangle to add an entry here`);
-      return;
-    }
-    const selectedTerms = parent.selectedTermsToSortAgainst.map((t) => {
-      return {
-        t,
-        label: t.tw.term.name + (t.tw.term.type == "geneVariant" ? " alterations" : " values")
-      };
-    });
-    const tbody = select_default(tr.node().parentNode);
-    tbody.selectAll("tr").remove();
-    tbody.selectAll("tr").data(selectedTerms).enter().append("tr").selectAll("td").data((d, i) => [
-      { label: i + 1, textAlign: "center", cursor: "", t: d.t },
-      { label: d.label, textAlign: "left", cursor: "" },
-      {
-        label: "Delete",
-        textAlign: "center",
-        cursor: "pointer",
-        click: parent.unsortSamplesAgainstTerm,
-        data: d
-      }
-    ]).enter().append("td").style("text-align", (d) => d.textAlign).style("cursor", (d) => d.cursor).html((d) => d.label).on("click", (event, d) => d.click?.(event, d));
-  }
-  self.init();
-  self.api = {
-    main: self.init,
-    destroy: () => {
-      opts.holder.selectAll("*").remove();
-    }
-  };
-  if (opts.debug) self.api.Inner = self;
-  return self.api;
-}
-
-export {
-  getSorterUi
-};
-//# sourceMappingURL=chunk-DXM5MQCZ.js.map