@sjcrh/proteinpaint-client 2.219.1 → 2.220.0

package/dist/chunk-6YGSVJJD.js

@@ -1,54 +0,0 @@
-import {
-  getColors
-} from "./chunk-ME3HB3V6.js";
-
-// termdb/handlers/junction.customTerm.ts
-var junctionCustomTermSource = "junction";
-function makeJunctionCustomTerm(junctions, eventlabel) {
-  if (!junctions.length) throw new Error("junctions[] is empty");
-  if (!eventlabel) {
-    const term = junctions[0];
-    return {
-      id: `junction:${term.id}`,
-      name: term.name,
-      source: junctionCustomTermSource,
-      tw: {
-        term,
-        q: { mode: "continuous" }
-      }
-    };
-  }
-  const termlst = [...new Map(junctions.map((term) => [term.id, term])).values()];
-  const colorScale = getColors(termlst.length);
-  const termIds = termlst.map((term) => term.id);
-  return {
-    id: `junction-event:${eventlabel}`,
-    name: eventlabel,
-    source: junctionCustomTermSource,
-    eventlabel,
-    tw: {
-      term: {
-        type: "termCollection",
-        isCustom: true,
-        memberType: "numeric",
-        name: eventlabel,
-        termIds,
-        termlst,
-        propsByTermId: Object.fromEntries(termlst.map((term) => [term.id, { color: colorScale(term.id) }])),
-        isleaf: true
-      },
-      q: {
-        mode: "continuous",
-        type: "values",
-        lst: termIds,
-        numerators: termIds
-      }
-    }
-  };
-}
-
-export {
-  junctionCustomTermSource,
-  makeJunctionCustomTerm
-};
-//# sourceMappingURL=chunk-6YGSVJJD.js.map

package/dist/chunk-7PQVNQFR.js

@@ -1,255 +0,0 @@
-import {
-  first_genetrack_tolist
-} from "./chunk-BKW35Z4U.js";
-import {
-  HYPER_COLOR,
-  HYPO_COLOR
-} from "./chunk-CJHNPYFQ.js";
-
-// plots/dmr/settings/defaults.ts
-function getDefaultDMRSettings(opts) {
-  const overrides = opts.settings || {};
-  const dm = opts?.app?.vocabApi?.termdbConfig?.queries?.dnaMethylation;
-  const chr = opts?.coordinateOverride?.chr;
-  const elementScale = dm?.regionAnalysis == "element" || Array.isArray(dm?.cpgChroms) && !!chr && !dm.cpgChroms.includes(chr);
-  const defaults = {
-    blockWidth: 800,
-    pad: elementScale ? 1e5 : 2e3,
-    lambda: elementScale ? 5e4 : 1e3,
-    C: 2,
-    fdr_cutoff: 0.05,
-    colors: {
-      group1: "#3b5ee6",
-      group2: "#c04e00",
-      hyper: HYPER_COLOR,
-      hypo: HYPO_COLOR
-    },
-    maxLoessRegion: 25e4,
-    minProbesForCi: 10,
-    backend: "rust",
-    maxRegionSize: 5e6
-  };
-  if (overrides.colors) {
-    Object.assign(defaults.colors, overrides.colors);
-    delete overrides.colors;
-  }
-  return Object.assign(defaults, overrides);
-}
-
-// plots/dmr/viewModel/DmrViewModel.ts
-var CCRE_TRACK_NAME = "ENCODE cCREs";
-var DmrViewModel = class {
-  constructor(dmrResult, config, genomeObj, queryChr, queryStart, queryStop) {
-    const { settings } = config;
-    const dmrBedItems = this.makeDmrBedItems(dmrResult, settings);
-    const sigCpgBedItems = this.makeSigCpgBedItems(dmrResult, settings, queryChr, queryStart, queryStop);
-    const xRange = (queryStop ?? 0) - (queryStart ?? 0);
-    const loess = dmrResult.diagnostic?.loess;
-    const showLoess = !!(loess && loess.group1_fitted.length > 0 && loess.group2_fitted.length > 0);
-    const showDots = xRange <= settings.dmr.maxLoessRegion;
-    const betaTrackResult = dmrResult.diagnostic ? this.renderBetaTrack(
-      dmrResult.diagnostic,
-      config,
-      settings.dmr.blockWidth,
-      showLoess,
-      showDots,
-      queryStart,
-      queryStop
-    ) : void 0;
-    this.viewData = {
-      tklst: this.buildTrackList(dmrBedItems, sigCpgBedItems, genomeObj, betaTrackResult?.img),
-      legendRows: this.buildLegendData(
-        config,
-        dmrResult.dmrs,
-        sigCpgBedItems,
-        showLoess,
-        showDots,
-        betaTrackResult?.showCi ?? false
-      ),
-      diagnostic: dmrResult.diagnostic,
-      dmrs: dmrResult.dmrs,
-      dmrBedItems,
-      showLoess,
-      showDots
-    };
-  }
-  buildTrackList(dmrBedItems, sigCpgBedItems, genomeObj, betaTrackImg) {
-    const tklst = [];
-    first_genetrack_tolist(genomeObj, tklst);
-    const ccre = (genomeObj?.tracks || []).find((t) => t.name == CCRE_TRACK_NAME);
-    if (ccre) tklst.push(structuredClone(ccre));
-    tklst.push({ type: "bedj", name: "DMRs", bedItems: dmrBedItems });
-    tklst.push({ type: "bedj", name: "Sig. CpGs", bedItems: sigCpgBedItems });
-    if (betaTrackImg) {
-      tklst.push({
-        type: "bigwig",
-        name: "Per-CpG Means",
-        height: 150,
-        imgData: betaTrackImg
-      });
-    }
-    return tklst;
-  }
-  buildLegendData(config, dmrs, sigCpgBedItems, showLoess, showDots, showCi) {
-    const { colors } = config.settings.dmr;
-    const g1 = config.group1Name || "Group 1";
-    const g2 = config.group2Name || "Group 2";
-    const meansItems = [];
-    if (showDots) {
-      meansItems.push({ text: `${g1} (control)`, color: colors.group1 }, { text: `${g2} (case)`, color: colors.group2 });
-    }
-    if (showLoess) {
-      const ciLabel = showCi ? " + 95% CI" : "";
-      meansItems.push(
-        { text: `${g1} LOESS trend${ciLabel}`, color: colors.group1, style: showCi ? "shaded" : "dashed" },
-        { text: `${g2} LOESS trend${ciLabel}`, color: colors.group2, style: showCi ? "shaded" : "dashed" }
-      );
-    }
-    const rows = [{ label: "Per-CpG Means", items: meansItems }];
-    const hasHyper = dmrs.some((d) => d.direction === "hyper");
-    const hasHypo = dmrs.some((d) => d.direction === "hypo");
-    if (hasHyper || hasHypo) {
-      const items = [];
-      if (hasHyper) items.push({ text: "Hypermethylated", color: colors.hyper });
-      if (hasHypo) items.push({ text: "Hypomethylated", color: colors.hypo });
-      rows.push({ label: "DMR", items });
-    }
-    if (sigCpgBedItems.length) {
-      const items = [];
-      const hasHyperCpg = sigCpgBedItems.some((b) => b.color === colors.hyper);
-      const hasHypoCpg = sigCpgBedItems.some((b) => b.color === colors.hypo);
-      if (hasHyperCpg) items.push({ text: "Hyper (FDR sig.)", color: colors.hyper });
-      if (hasHypoCpg) items.push({ text: "Hypo (FDR sig.)", color: colors.hypo });
-      rows.push({ label: "Sig. CpGs", items });
-    }
-    return rows;
-  }
-  /**
-   * Render the per-CpG means scatter plot to an offscreen canvas and return
-   * a data URI suitable for the bigwig imgData track.
-   */
-  renderBetaTrack(diagnostic, config, blockWidth, showLoess, showDots, queryStart, queryStop) {
-    const { probes } = diagnostic;
-    if (!probes.positions.length) return void 0;
-    const { colors, fdr_cutoff, minProbesForCi } = config.settings.dmr;
-    const dpr = typeof window !== "undefined" && window.devicePixelRatio > 1 ? window.devicePixelRatio : 1;
-    const width = blockWidth;
-    const height = 150;
-    const canvas = document.createElement("canvas");
-    canvas.width = width * dpr;
-    canvas.height = height * dpr;
-    const ctx = canvas.getContext("2d");
-    if (!ctx) return void 0;
-    ctx.scale(dpr, dpr);
-    const xMin = queryStart ?? probes.positions[0];
-    const xMax = queryStop ?? probes.positions[probes.positions.length - 1];
-    const xRange = xMax - xMin || 1;
-    const scaleX = (val) => (val - xMin) / xRange * width;
-    const scaleY = (val) => height - val * height;
-    ctx.clearRect(0, 0, width, height);
-    let showCi = false;
-    if (showLoess && diagnostic.loess) {
-      const { loess } = diagnostic;
-      const firstProbePos = probes.positions[0];
-      const lastProbePos = probes.positions[probes.positions.length - 1];
-      showCi = probes.positions.length >= minProbesForCi;
-      for (const [fitted, ciLower, ciUpper, color] of [
-        [loess.group1_fitted, loess.group1_ci_lower, loess.group1_ci_upper, colors.group1],
-        [loess.group2_fitted, loess.group2_ci_lower, loess.group2_ci_upper, colors.group2]
-      ]) {
-        if (!fitted.length) continue;
-        const lPos = loess.positions;
-        let iStart = 0;
-        let iEnd = lPos.length - 1;
-        while (iStart < lPos.length && lPos[iStart] < firstProbePos) iStart++;
-        while (iEnd >= 0 && lPos[iEnd] > lastProbePos) iEnd--;
-        if (iStart > iEnd) continue;
-        if (showCi) {
-          ctx.globalAlpha = 0.12;
-          ctx.fillStyle = color;
-          ctx.beginPath();
-          for (let i = iStart; i <= iEnd; i++) {
-            ctx.lineTo(scaleX(lPos[i]), scaleY(Math.max(0, Math.min(1, ciUpper[i]))));
-          }
-          for (let i = iEnd; i >= iStart; i--) {
-            ctx.lineTo(scaleX(lPos[i]), scaleY(Math.max(0, Math.min(1, ciLower[i]))));
-          }
-          ctx.closePath();
-          ctx.fill();
-        }
-        ctx.globalAlpha = 0.8;
-        ctx.strokeStyle = color;
-        ctx.lineWidth = 2;
-        ctx.setLineDash(showCi ? [] : [6, 4]);
-        ctx.beginPath();
-        for (let i = iStart; i <= iEnd; i++) {
-          ctx.lineTo(scaleX(lPos[i]), scaleY(Math.max(0, Math.min(1, fitted[i]))));
-        }
-        ctx.stroke();
-        ctx.setLineDash([]);
-      }
-    }
-    if (!showDots) {
-      ctx.globalAlpha = 1;
-      return { img: { minv: 0, maxv: 1, src: canvas.toDataURL("image/png") }, showCi };
-    }
-    for (let i = 0; i < probes.positions.length; i++) {
-      const x = scaleX(probes.positions[i]);
-      const isSig = probes.fdr[i] < fdr_cutoff;
-      const alpha = isSig ? 0.85 : 0.3;
-      ctx.globalAlpha = alpha;
-      ctx.fillStyle = colors.group1;
-      const m1 = probes.mean_group1[i];
-      if (m1 != null) {
-        ctx.beginPath();
-        ctx.arc(x, scaleY(m1), 4, 0, Math.PI * 2);
-        ctx.fill();
-      }
-      ctx.fillStyle = colors.group2;
-      const m2 = probes.mean_group2[i];
-      if (m2 != null) {
-        ctx.beginPath();
-        ctx.arc(x, scaleY(m2), 4, 0, Math.PI * 2);
-        ctx.fill();
-      }
-    }
-    ctx.globalAlpha = 1;
-    return { img: { minv: 0, maxv: 1, src: canvas.toDataURL("image/png") }, showCi };
-  }
-  makeDmrBedItems(dmrResult, settings) {
-    return dmrResult.dmrs.map((dmr) => {
-      const negLog = -Math.log10(Math.max(dmr.min_smoothed_fdr, 1e-300));
-      const alpha = Math.round(Math.min(255, Math.max(50, negLog / 10 * 255)));
-      const hex = alpha.toString(16).padStart(2, "0");
-      const base = dmr.direction === "hyper" ? settings.dmr.colors.hyper : settings.dmr.colors.hypo;
-      return { chr: dmr.chr, start: dmr.start, stop: dmr.stop, color: base + hex };
-    });
-  }
-  makeSigCpgBedItems(dmrResult, settings, chr, queryStart, queryStop) {
-    const diag = dmrResult.diagnostic;
-    if (!diag) return [];
-    const { probes } = diag;
-    const items = [];
-    const minDeltaBeta = 0.05;
-    for (let i = 0; i < probes.positions.length; i++) {
-      if (probes.fdr[i] >= settings.dmr.fdr_cutoff) continue;
-      const pos = probes.positions[i];
-      if (queryStart != null && queryStop != null && (pos < queryStart || pos > queryStop)) continue;
-      const mg1 = probes.mean_group1[i];
-      const mg2 = probes.mean_group2[i];
-      if (mg1 == null || mg2 == null) continue;
-      const deltaBeta = mg2 - mg1;
-      if (Math.abs(deltaBeta) < minDeltaBeta) continue;
-      const color = deltaBeta >= 0 ? settings.dmr.colors.hyper : settings.dmr.colors.hypo;
-      items.push({ chr, start: pos, stop: pos + 1, color });
-    }
-    return items;
-  }
-};
-
-export {
-  getDefaultDMRSettings,
-  CCRE_TRACK_NAME,
-  DmrViewModel
-};
-//# sourceMappingURL=chunk-7PQVNQFR.js.map

package/dist/chunk-7XW4JWMJ.js

@@ -1,170 +0,0 @@
-import {
-  getEmptyCell,
-  maySetEmptyCell,
-  setCellProps
-} from "./chunk-WV44DGEJ.js";
-import {
-  TermTypeGroups
-} from "./chunk-ME3HB3V6.js";
-import {
-  __export
-} from "./chunk-HS5PO5ZQ.js";
-
-// plots/matrix/matrix.serieses.js
-var matrix_serieses_exports = {};
-__export(matrix_serieses_exports, {
-  getSerieses: () => getSerieses
-});
-function getSerieses(data) {
-  const s = this.settings.matrix;
-  const serieses = [];
-  const { colw, dx, dy, xMin, xMax } = this.dimensions;
-  const dvt = this.config.divideBy || {};
-  const divideByTermId = "id" in dvt ? dvt.id : dvt.name;
-  const legendGroups = {};
-  this.colorScaleByTermId = {};
-  for (const t of this.termOrder) {
-    const $id = t.tw.$id;
-    const termid = "id" in t.tw.term ? t.tw.term.id : t.tw.term.name;
-    const isDivideByTerm = termid === divideByTermId;
-    const emptyGridCells = [];
-    const cellht = t.grp.type == "hierCluster" ? s.clusterRowh : dy;
-    const htAdjust = t.grp.type == "hierCluster" ? 0 : t.totalHtAdjustments;
-    const y = s.transpose ? 0 : t.totalIndex * cellht + t.visibleGrpIndex * s.rowgspace + htAdjust;
-    const twSpecificSettings = this.config.settings.matrix.twSpecificSettings;
-    const hoverY0 = (twSpecificSettings[$id]?.contBarGap || 0) + y;
-    const series = {
-      t,
-      tw: t.tw,
-      cells: [],
-      y,
-      hoverY0,
-      hoverY1: hoverY0 + (twSpecificSettings[$id]?.contBarH || cellht)
-    };
-    for (const so of this.unfilteredSampleOrder) {
-      const { totalIndex, grpIndex, row } = so;
-      series.x = !s.transpose ? 0 : t.totalIndex * dx + t.visibleGrpIndex * s.colgspace;
-      const anno = row[$id];
-      const cellTemplate = {
-        s: so,
-        sample: row.sample,
-        tw: t.tw,
-        term: t.tw.term,
-        termid,
-        $id,
-        totalIndex,
-        grpIndex,
-        row,
-        t,
-        seriesY: y
-      };
-      if (!anno) {
-        if (!so.grp.isExcluded && (s.useCanvas || so.grp)) {
-          const cell = getEmptyCell(cellTemplate, s, this.dimensions);
-          series.cells.push(cell);
-        }
-        continue;
-      }
-      const key = anno.key;
-      const values = anno.filteredValues || anno.values || [anno.value];
-      const numRects = s.cellEncoding == "oncoprint" ? 1 : values.length;
-      const height = !s.transpose ? s.rowh / numRects : colw;
-      const width = !s.transpose ? colw : colw / values.length;
-      const siblingCells = [];
-      if (!anno || !anno.renderedValues?.length) {
-        if (!so.grp.isExcluded && (s.useCanvas || so.grp)) {
-          const cell = getEmptyCell(cellTemplate, s, this.dimensions);
-          series.cells.push(cell);
-        }
-        continue;
-      }
-      for (const [i, value] of values.entries()) {
-        const cell = Object.assign({ key, siblingCells }, cellTemplate);
-        cell.valueIndex = i;
-        let legend;
-        if (typeof t.tw.setCellProps == "function") {
-          legend = t.tw.setCellProps(cell, anno, value, s, t, this, width, height, dx, dy, i);
-        } else {
-          const cellProps = t.grp.type == "hierCluster" ? setCellProps["hierCluster"] : t.tw.term.type == "samplelst" ? setCellProps["categorical"] : setCellProps[t.tw.term.type];
-          legend = cellProps(cell, t.tw, anno, value, s, t, this, width, height, dx, dy, i);
-        }
-        if (!s.useCanvas && (cell.x + cell.width < xMin || cell.x - cell.width > xMax)) continue;
-        if (legend) {
-          for (const l of [legendGroups, so.grp.legendGroups]) {
-            if (!l) continue;
-            if (!l[legend.group]) {
-              l[legend.group] = {
-                ref: legend.ref,
-                values: {},
-                order: legend.order,
-                $id,
-                origin: legend.entry.origin
-              };
-              if (legend.entry.dt) l[legend.group].dt = [legend.entry.dt];
-            }
-            const lg = l[legend.group];
-            if (lg.dt && !lg.dt.includes(legend.entry.dt)) lg.dt.push(legend.entry.dt);
-            const legendK = legend.entry.origin ? legend.entry.origin + legend.value : legend.value;
-            if (!lg.values[legendK]) {
-              lg.values[legendK] = JSON.parse(JSON.stringify(legend.entry));
-              if (legend.entry.scale) lg.values[legendK].scale = legend.entry.scale;
-            }
-            if (!lg.values[legendK].samples) lg.values[legendK].samples = /* @__PURE__ */ new Set();
-            if (t.tw.term.name === TermTypeGroups.MUTATION_SIGNATURE) {
-              if (value?.value > 0) lg.values[legendK].samples.add(row.sample);
-            } else lg.values[legendK].samples.add(row.sample);
-            if (isDivideByTerm) {
-              lg.values[legend.value].isExcluded = so.grp.isExcluded;
-            }
-          }
-        }
-        if (!so.grp.isExcluded) {
-          if (anno.renderedValues.includes(value)) series.cells.push(cell);
-          siblingCells.push(cell);
-        }
-      }
-      if (s.showGrid == "rect" && !so.grp.isExcluded) {
-        const cell = t.grp.type == "hierCluster" ? getEmptyCell(cellTemplate, s, this.dimensions) : maySetEmptyCell[t.tw.term.type]?.(siblingCells, cellTemplate, s, this.dimensions, this);
-        if (cell) emptyGridCells.push(cell);
-      }
-    }
-    if (emptyGridCells.length) series.cells.unshift(...emptyGridCells);
-    if (series.cells.length) serieses.push(series);
-  }
-  addAllHiddenLegendGroups(legendGroups, this);
-  this.legendData = this.getLegendData(legendGroups, data.refs, this);
-  for (const grp of this.sampleGroups) {
-    grp.legendData = this.getLegendData(grp.legendGroups, data.refs, this);
-  }
-  return serieses;
-}
-function addAllHiddenLegendGroups(legendGroups, self) {
-  for (const valueFilter of self.config.legendValueFilter.lst) {
-    if (valueFilter.tvs.term.type == "categorical" && !legendGroups[valueFilter.tvs.term.$id]) {
-      legendGroups[valueFilter.tvs.term.$id] = {
-        ref: {},
-        values: {},
-        $id: valueFilter.tvs.term.$id
-      };
-    } else if (valueFilter.tvs.term.type == "geneVariant" && !legendGroups[valueFilter.legendGrpName]) {
-      legendGroups[valueFilter.legendGrpName] = {
-        ref: {},
-        values: {},
-        dt: [valueFilter.tvs.values[0].dt],
-        origin: valueFilter.tvs.values[0].origin
-      };
-    } else if ((valueFilter.tvs.term.type == "integer" || valueFilter.tvs.term.type == "float") && !legendGroups[valueFilter.tvs.term.$id]) {
-      legendGroups[valueFilter.tvs.term.$id] = {
-        ref: {},
-        values: {},
-        $id: valueFilter.tvs.term.$id
-      };
-    }
-  }
-}
-
-export {
-  getSerieses,
-  matrix_serieses_exports
-};
-//# sourceMappingURL=chunk-7XW4JWMJ.js.map

package/dist/chunk-7ZEJKFGW.js

@@ -1,55 +0,0 @@
-import {
-  colorinframe
-} from "./chunk-BKW35Z4U.js";
-import {
-  IN_frame,
-  OUT_frame
-} from "./chunk-ME3HB3V6.js";
-
-// src/spliceevent.phrase.js
-function spliceevent_phrase_default(evt) {
-  const htmls = [];
-  if (evt.isaltexon || evt.isskipexon) {
-    const exonstart = Math.min(...evt.skippedexon);
-    const exonstop = Math.max(...evt.skippedexon);
-    htmls.push(
-      '<div style="display:inline-block">' + (exonstart == exonstop ? "exon " + (exonstart + 1) : "exons " + (exonstart + 1) + "-" + (exonstop + 1)) + " " + (evt.isaltexon ? "alternative usage" : "skipping") + "</div>"
-    );
-    if (evt.isaltexon) {
-      htmls.push(
-        "<div class=sja_tinylogo_body>" + evt.gmB.isoform + ", " + evt.gmA.isoform + "</div><div class=sja_tinylogo_head>ISOFORMS</div>"
-      );
-    } else {
-      htmls.push("<div class=sja_tinylogo_body>" + evt.gm.isoform + "</div><div class=sja_tinylogo_head>ISOFORM</div>");
-    }
-    if (evt.junctionB.data) {
-      htmls.push(
-        "<div class=sja_tinylogo_body>" + evt.junctionB.data.length + "</div><div class=sja_tinylogo_head>SAMPLE" + (evt.junctionB.data.length > 1 ? "S" : "") + "</div>"
-      );
-    }
-    htmls.push("<div class=sja_tinylogo_body>" + evt.percentage + " %</div><div class=sja_tinylogo_head>PERCENT</div>");
-    if (evt.framenocheck) {
-      if (evt.utr3) {
-        htmls.push(`<div class=sja_tinylogo_body style="background-color:#ededed">3' UTR</div>`);
-      } else if (evt.utr5) {
-        htmls.push(`<div class=sja_tinylogo_body style="background-color:#ededed">5' UTR</div>`);
-      }
-    } else if (evt.frame == IN_frame) {
-      htmls.push(
-        '<div class=sja_tinylogo_body style="background-color:' + colorinframe + ';color:white">IN</div><div class=sja_tinylogo_head>FRAME</div>'
-      );
-    } else if (evt.frame == OUT_frame) {
-      htmls.push("<div class=sja_tinylogo_body>OUT</div><div class=sja_tinylogo_head>FRAME</div>");
-    } else {
-      htmls.push("<div class=sja_tinylogo_body>?</div><div class=sja_tinylogo_head>FRAME</div>");
-    }
-  } else {
-    return "unknown event type!!";
-  }
-  return htmls.join(" ");
-}
-
-export {
-  spliceevent_phrase_default
-};
-//# sourceMappingURL=chunk-7ZEJKFGW.js.map

package/dist/chunk-A6ZUYQHO.js

@@ -1,159 +0,0 @@
-import {
-  NumericDensity
-} from "./chunk-CTVPW77S.js";
-import {
-  HandlerBase,
-  Tabs
-} from "./chunk-BKW35Z4U.js";
-
-// termsetting/handlers/NumericHandler.ts
-var NumericHandler = class extends HandlerBase {
-  constructor(opts) {
-    super(opts);
-    this.tabs = [];
-    this.handlerByMode = {};
-    this.dom = {};
-    this.opts = opts;
-    this.termsetting = opts.termsetting;
-    this.tw = opts.termsetting.tw;
-    this.tabs = this.setTabData();
-    this.density = new NumericDensity(opts);
-  }
-  getPillStatus() {
-    this.tw = this.termsetting.tw;
-    const status = this.tw.getStatus(this.termsetting.usecase, this.termsetting.data);
-    if (this.tw.term.type == "geneExpression" && this.tw.term.sampleTypeLabel)
-      status.text += ` (${this.tw.term.sampleTypeLabel})`;
-    return status;
-  }
-  setTabData() {
-    const self = this.termsetting;
-    const tabs = [];
-    const callback = async (event, tabData) => {
-      if (event) event.stopPropagation();
-      try {
-        await this.setEditHandler(tabData);
-        await this.editHandler.showEditMenu(tabData.contentHolder);
-      } catch (e) {
-        this.dom.errdiv.style("display", "").text(e);
-      }
-    };
-    const numTabs = self.opts.numericEditMenuVersion.length;
-    if (self.opts.numericEditMenuVersion.includes("continuous")) {
-      tabs.push({
-        mode: "continuous",
-        label: self.term.type == "survival" ? "Time to Event" : "Continuous",
-        callback,
-        active: this.tw.q.mode === "continuous" || numTabs === 1
-      });
-    }
-    if (self.opts.numericEditMenuVersion.includes("discrete")) {
-      tabs.push({
-        mode: "discrete",
-        label: self.term.type == "survival" ? "Exit code" : "Discrete",
-        callback,
-        active: this.tw.q.mode === "discrete" || numTabs === 1
-      });
-    }
-    if (self.opts.numericEditMenuVersion.includes("spline")) {
-      tabs.push({
-        mode: "spline",
-        label: "Cubic spline",
-        callback,
-        active: this.tw.q.mode === "spline" || numTabs === 1
-      });
-    }
-    if (self.opts.numericEditMenuVersion.includes("binary")) {
-      tabs.push({
-        mode: "binary",
-        label: "Binary",
-        callback,
-        active: this.tw.q.mode === "binary" || numTabs === 1
-      });
-    }
-    return tabs;
-  }
-  async setEditHandler(tabData) {
-    if (!this.handlerByMode[tabData.mode]) {
-      switch (tabData.mode) {
-        case "continuous": {
-          const { NumContEditor } = await import("./NumContEditor-EN6V4FLQ.js");
-          this.handlerByMode.continuous = new NumContEditor(this.opts, this);
-          break;
-        }
-        case "discrete": {
-          const { NumDiscreteEditor } = await import("./NumDiscreteEditor-H6J67YEL.js");
-          this.handlerByMode.discrete = new NumDiscreteEditor(this.opts, this);
-          break;
-        }
-        case "binary": {
-          const { NumBinaryEditor } = await import("./NumBinaryEditor-5R4EUQOZ.js");
-          this.handlerByMode.binary = new NumBinaryEditor(this.opts, this);
-          break;
-        }
-        case "spline": {
-          const { NumSplineEditor } = await import("./NumSplineEditor-AOR6OAJA.js");
-          this.handlerByMode.spline = new NumSplineEditor(this.opts, this);
-          break;
-        }
-        default:
-          throw `unexpected numeric tabData.mode='${tabData.mode}'`;
-          break;
-      }
-    }
-    this.editHandler = this.handlerByMode[tabData.mode];
-  }
-  async showEditMenu(div) {
-    try {
-      this.showLoading(div);
-      this.dom.errdiv = div.append("div").attr("class", "sja_errorbar").style("display", "none");
-      this.tw = this.termsetting.tw;
-      const self = this.tw;
-      for (const t of this.tabs) {
-        t.active = this.tabs.length === 1 || self.q.mode == t.mode || t.mode == "continuous" && !self.q.mode;
-      }
-      this.density_data = await this.density.setData();
-      await this.setEditHandler(this.tabs.find((t) => t.active));
-      this.dom.editDiv = div.append("div").attr("data-testid", "sjpp-num-ts-edit-div");
-      this.dom.btnDiv = div.append("div").style("margin", "0px 0px 5px 5px");
-      this.renderButtons(this.dom.btnDiv);
-      if (this.tabs.length > 1) {
-        this.dom.topBar = this.dom.editDiv.append("div").attr("data-testid", "sja-ts-numeric-edit-top-bar").style("padding", "10px");
-        this.dom.topBar.append("span").html("Use as ");
-        new Tabs({
-          holder: this.dom.topBar.append("div").style("display", "inline-block"),
-          contentHolder: this.dom.editDiv.append("div"),
-          noTopContentStyle: true,
-          tabs: this.tabs
-        }).main();
-      } else {
-        await this.editHandler.showEditMenu(this.dom.editDiv);
-      }
-      this.dom.loadingDiv.style("display", "none");
-    } catch (e) {
-      this.hideLoading();
-      this.dom.errdiv.style("display", "").text(typeof e == "object" ? e.message || e.error || e : e);
-    }
-  }
-  renderButtons(btnDiv) {
-    btnDiv.append("button").style("margin", "5px").attr("data-testId", "sjpp_numeric_edit_apply").html("Apply").on("click", () => {
-      this.termsetting.q = this.editHandler.getEditedQ();
-      this.termsetting.dom.tip.hide();
-      this.termsetting.api.runCallback();
-    });
-    btnDiv.append("button").style("margin", "5px").attr("data-testId", "sjpp_numeric_edit_reset").html("Reset").on("click", () => {
-      this.editHandler.undoEdits();
-    });
-  }
-  destroy() {
-    for (const s of Object.values(this.dom)) {
-      if (typeof s.remove == "function") s.remove();
-    }
-    this.density.destroy();
-  }
-};
-
-export {
-  NumericHandler
-};
-//# sourceMappingURL=chunk-A6ZUYQHO.js.map