@sjcrh/proteinpaint-client 2.200.0 → 2.202.0

package/dist/chunk-RL3IRMOA.js

@@ -0,0 +1,236 @@
+import {
+  DownloadMenu,
+  ListSamples,
+  filterJoin,
+  getFilterItemByTag,
+  renderTable
+} from "./chunk-73PFJ2VF.js";
+import {
+  SINGLECELL_GENE_EXPRESSION
+} from "./chunk-GEQUQ3GG.js";
+import {
+  niceNumLabels
+} from "./chunk-WPHUM5S5.js";
+
+// plots/violin.interactivity.js
+function setInteractivity(self) {
+  self.getChartImages = function() {
+    const charts = [];
+    for (const [key, chart] of Object.entries(self.data.charts)) {
+      const title = self.getChartTitle(chart.chartId);
+      const name = `${self.config.term.term.name}  ${title}`;
+      const chartDiv = chart.chartDiv;
+      charts.push({ name, svg: chartDiv.select("svg") });
+    }
+    return charts;
+  };
+  self.download = function(event) {
+    if (!self.state) return;
+    const name2svg = self.getChartImages();
+    const dm = new DownloadMenu(name2svg, self.config.term.term.name);
+    dm.show(event.clientX, event.clientY, event.target);
+  };
+  self.displayLabelClickMenu = function(t1, t2, plot, event) {
+    if (!t2) return;
+    if (self.config.term.term.type == SINGLECELL_GENE_EXPRESSION) return;
+    const label = t1.q.mode === "continuous" ? "term2" : "term";
+    const options = [];
+    if (this.app.getState().nav.header_mode !== "only_buttons")
+      options.push({
+        label: `Add filter: ${plot.label.split(",")[0]}`,
+        testid: "sjpp-violinLabOpt-addf",
+        callback: getAddFilterCallback(self, plot)
+      });
+    options.push({
+      label: `Hide: ${plot.label}`,
+      testid: "sjpp-violinLabOpt-hide",
+      callback: () => {
+        const term = self.config[label];
+        const isHidden = true;
+        self.app.dispatch({
+          type: "plot_edit",
+          id: self.id,
+          config: {
+            [label]: {
+              isAtomic: true,
+              term: term.term,
+              q: getUpdatedQfromClick(plot, term, isHidden)
+            }
+          }
+        });
+      }
+    });
+    const { samples } = self.config.controlLabels;
+    if (self.state.displaySampleIds && self.state.hasVerifiedToken) {
+      options.push({
+        label: `List ${samples}`,
+        testid: "sjpp-violinLabOpt-list",
+        callback: async () => {
+          const [start, end] = [self.data.min, self.data.max];
+          await self.callListSamples(event, plot, start, end);
+        }
+      });
+      if (self.opts.allow2selectSamples) {
+        const ss = self.opts.allow2selectSamples;
+        options.push({
+          label: ss.buttonText,
+          callback: async () => {
+            const [start, end] = [self.data.min, self.data.max];
+            await self.selectSamples(plot, start, end, ss);
+          }
+        });
+      }
+    }
+    self.displayMenu(event, options);
+  };
+  self.displayBrushMenu = function(t1, t2, self2, plot, event, scale, isH) {
+    const selection = event.selection;
+    const [start, end] = isH ? [scale.invert(selection[0]), scale.invert(selection[1])] : [scale.invert(selection[1]), scale.invert(selection[0])];
+    const options = [];
+    if (this.app.getState().nav.header_mode === "with_tabs")
+      options.push({
+        label: `Add filter`,
+        testid: "sjpp-violinBrushOpt-addf",
+        callback: getAddFilterCallback(self2, plot, start, end)
+      });
+    const { samples } = self2.config.controlLabels;
+    if (self2.state.displaySampleIds && self2.state.hasVerifiedToken) {
+      options.push({
+        label: `List ${samples}`,
+        testid: "sjpp-violinBrushOpt-list",
+        callback: async () => self2.callListSamples(event.sourceEvent, plot, start, end)
+      });
+      if (self2.opts.allow2selectSamples) {
+        const ss = self2.opts.allow2selectSamples;
+        options.push({
+          label: ss.buttonText,
+          callback: async () => {
+            await self2.selectSamples(plot, start, end, ss);
+          }
+        });
+      }
+    }
+    self2.displayMenu(event.sourceEvent, options, start, end);
+  };
+  self.displayMenu = function(event, options, start, end) {
+    const tip = self.dom.clicktip.clear().show(event.clientX, event.clientY);
+    const isBrush = start != null && end != null;
+    if (isBrush) {
+      const [niceStart, niceEnd] = self.config.term.term.type == "integer" ? [Math.round(start), Math.round(end)] : niceNumLabels([start, end]);
+      tip.d.append("div").style("margin", "10px").text(`From ${niceStart} to ${niceEnd}`);
+    }
+    tip.d.append("div").selectAll("div").data(options).enter().append("div").attr("class", "sja_menuoption sja_sharp_border").attr("data-testid", (d) => d.testid).text((d) => d.label).on("click", async (event2, d) => {
+      if (event2.target._clicked) return;
+      event2.target._clicked = true;
+      event2.target.textContent = "Loading...";
+      await d.callback();
+      tip.hide();
+    });
+  };
+  self.selectSamples = async function(plot, start, end, ss) {
+    const ls = self.getSampleList(plot, start, end);
+    const data = await ls.getData();
+    const table = ls.setTableData(data);
+    const samples = table[2];
+    ss.callback({
+      samples: await self.app.vocabApi.convertSampleId(samples, ss.attributes),
+      source: ss.defaultSelectionLabel || `Selected from violin`
+    });
+  };
+  self.getSampleList = function(plot, start, end) {
+    const { term, term2, term0 } = self.config;
+    const bins = self.data.bins;
+    const rangeStart = start !== void 0 ? start : null;
+    const rangeStop = end !== void 0 ? end : null;
+    const ls = new ListSamples({
+      app: self.app,
+      termfilter: self.state.termfilter,
+      term,
+      term2,
+      term0,
+      plot,
+      bins,
+      start: rangeStart,
+      end: rangeStop
+    });
+    return ls;
+  };
+  self.callListSamples = async function(event, plot, start, end) {
+    const ls = self.getSampleList(plot, start, end);
+    const data = await ls.getData();
+    const [rows, columns] = ls.setTableData(data);
+    const tip = self.dom.sampletabletip;
+    tip.clear().show(event.clientX, event.clientY, false);
+    renderTable({
+      rows,
+      columns,
+      div: tip.d,
+      showLines: true,
+      maxHeight: "40vh",
+      resize: true,
+      dataTestId: "sjpp-listsampletable"
+    });
+  };
+  self.labelHideLegendClicking = function(t2, plot) {
+    self.dom.legendDiv.selectAll(".sjpp-htmlLegend").on("click", (event) => {
+      event.stopPropagation();
+      const d = event.target.__data__;
+      const termNum = t2?.term.type === "condition" || t2?.term.type === "samplelst" || t2?.term.type === "categorical" || (t2?.term.type === "float" || t2?.term.type === "integer") && self.config.term?.q.mode === "continuous" ? "term2" : "term";
+      const term = self.config[termNum];
+      if (t2) {
+        for (const key of Object.keys(term?.q?.hiddenValues)) {
+          if (d.text === key) {
+            delete term.q.hiddenValues[key];
+          }
+        }
+        const isHidden = false;
+        self.app.dispatch({
+          type: "plot_edit",
+          id: self.id,
+          config: {
+            [termNum]: {
+              isAtomic: true,
+              term: term.term,
+              q: getUpdatedQfromClick(plot, term, isHidden)
+            }
+          }
+        });
+      }
+    }).on("mouseover", (event) => {
+      const q = event.target.__data__;
+      if (q === void 0) return;
+      if (q.isHidden === true && q.isClickable === true) {
+        self.dom.hovertip.clear().show(event.clientX, event.clientY).d.append("span").text("Click to unhide plot");
+      }
+    }).on("mouseout", function() {
+      self.dom.hovertip.hide();
+    });
+  };
+}
+function getAddFilterCallback(self, plot, rangeStart, rangeStop) {
+  const ls = self.getSampleList(plot, rangeStart, rangeStop);
+  return () => {
+    const filterUiRoot = getFilterItemByTag(self.state.termfilter.filter, "filterUiRoot");
+    const filter = filterJoin([filterUiRoot, ls.tvslst]);
+    filter.tag = "filterUiRoot";
+    self.app.dispatch({
+      type: "filter_replace",
+      filter
+    });
+  };
+}
+function getUpdatedQfromClick(plot, term, isHidden = false) {
+  const label = plot.label;
+  const valueId = term?.term?.values ? term?.term?.values?.[label]?.label : label;
+  const id = !valueId ? label : valueId;
+  const q = term.q;
+  if (!q.hiddenValues) q.hiddenValues = {};
+  if (isHidden) q.hiddenValues[id] = 1;
+  else delete q.hiddenValues[id];
+  return q;
+}
+
+export {
+  setInteractivity
+};
+//# sourceMappingURL=chunk-RL3IRMOA.js.map

package/dist/chunk-RVRRHEUG.js

@@ -0,0 +1,26 @@
+import {
+  plotColor
+} from "./chunk-GEQUQ3GG.js";
+
+// plots/boxplot/defaults.ts
+function getDefaultBoxplotSettings(app, overrides = {}) {
+  const defaults = {
+    plotLength: 550,
+    color: plotColor,
+    displayMode: "default",
+    labelPad: 10,
+    isLogScale: false,
+    isVertical: false,
+    orderByMedian: false,
+    rowHeight: 50,
+    rowSpace: 15,
+    removeOutliers: false,
+    showAssocTests: true
+  };
+  return Object.assign(defaults, overrides);
+}
+
+export {
+  getDefaultBoxplotSettings
+};
+//# sourceMappingURL=chunk-RVRRHEUG.js.map

package/dist/chunk-SCOFWMSE.js

@@ -0,0 +1,240 @@
+import {
+  make_radios
+} from "./chunk-73PFJ2VF.js";
+import {
+  initBinConfig
+} from "./chunk-X4QQRHFB.js";
+import {
+  toStoredUnit,
+  toUserUnit
+} from "./chunk-75T7ESEO.js";
+import {
+  format
+} from "./chunk-UJELJXJG.js";
+
+// termsetting/handlers/NumRegularBinEditor.ts
+var NumRegularBinEditor = class {
+  constructor(editHandler) {
+    this.dom = {};
+    this.editHandler = editHandler;
+    this.opts = editHandler.opts;
+    this.tw = editHandler.tw;
+    this.termsetting = editHandler.termsetting;
+  }
+  /* q holds bin boundaries in the unit the term's values are stored in, while the <input>s and the
+  density plot show them in the term's user-facing unit. toDisplay()/toStored() cross that boundary;
+  both are identity functions unless the term declares valueConversion{} */
+  toDisplay(v) {
+    return toUserUnit(v, this.tw.term);
+  }
+  toStored(v) {
+    return toStoredUnit(v, this.tw.term);
+  }
+  render(div) {
+    this.tw = this.editHandler.tw;
+    const isRemounting = !!this.dom.binsTable && this.editHandler.dom.binsDiv?.node().contains(this.dom.binsTable.node());
+    if (!isRemounting) this.q = this.getDefaultQ();
+    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+    if (isRemounting) return;
+    if (this.dom.binsTable) {
+      this.dom.binsTable.remove();
+      delete this.dom.binsTable;
+    }
+    const binsTable = div.append("table");
+    this.dom.binsTable = binsTable;
+    this.renderBinSizeInput(binsTable.append("tr"));
+    this.renderFirstBinInput(binsTable.append("tr"));
+    this.renderLastBinInputs(binsTable.append("tr"));
+  }
+  getDefaultQ() {
+    if (this.tw.q.type == "regular-bin") return JSON.parse(JSON.stringify(this.tw.q));
+    const t = this.tw.term;
+    const defaultQ = this.termsetting.opts.use_bins_less && t.bins?.less || t.bins?.default;
+    if (defaultQ) return JSON.parse(JSON.stringify(defaultQ));
+    const binConfig = initBinConfig(this.editHandler.handler.density_data);
+    return typeof binConfig == "string" ? JSON.parse(binConfig) : binConfig;
+  }
+  renderBinSizeInput(tr) {
+    const handler = this.editHandler.handler;
+    tr.append("td").style("margin", "5px").style("opacity", 0.5).text("Bin Size");
+    const { min, max } = handler.density_data;
+    const q = this.q;
+    const origBinSize = this.toDisplay(q.bin_size);
+    this.dom.bin_size_input = tr.append("td").append("input").attr("type", "number").attr(
+      "value",
+      handler.density.scaleFactor == 1 && "rounding" in q ? format(q.rounding || ".0f")(q.bin_size) : origBinSize
+    ).attr("data-testid", "sjpp-num-reg-bin-editor-size").style("margin-left", "15px").style("width", "100px").style("color", () => q.bin_size > Math.abs(max - min) ? "red" : "").on("change", (event) => {
+      const newValue = this.toStored(Number(event.target.value));
+      if (newValue <= 0) {
+        window.alert("Please enter non-negative bin size.");
+        event.target.value = origBinSize;
+        return;
+      }
+      if ((max - min) / newValue > 100) {
+        window.alert("Bin size too small. Try setting a bigger value.");
+        event.target.value = origBinSize;
+        return;
+      }
+      q.bin_size = newValue;
+      this.dom.bin_size_input.style(
+        "color",
+        q.bin_size > max - min ? "red" : this.toDisplay(newValue) != origBinSize ? "green" : ""
+      );
+      handler.density.setBinLines(this.getBoundaryOpts());
+    });
+  }
+  renderFirstBinInput(tr) {
+    const handler = this.editHandler.handler;
+    const q = this.q;
+    if (!q.first_bin) throw "missing q.first_bin";
+    tr.append("td").style("margin", "5px").style("opacity", 0.5).text("First Bin Stop");
+    const { min, max } = handler.density_data;
+    const origValue = this.toDisplay(q.first_bin.stop);
+    this.dom.first_stop_input = tr.append("td").append("input").attr("type", "number").property("value", origValue).style("width", "100px").style("margin-left", "15px").on("change", (event) => {
+      const newValue = this.toStored(Number(event.target.value));
+      if (Number(event.target.value) < this.toDisplay(min) || Number(event.target.value) > this.toDisplay(max)) {
+        window.alert("First bin stop value out of bound.");
+        event.target.value = origValue;
+        return;
+      }
+      this.q.first_bin.stop = newValue;
+      handler.density.setBinLines(this.getBoundaryOpts());
+    });
+    tr.append("td").append("div").style("font-size", ".6em").style("opacity", 0.5).style("display", handler.density.no_density_data ? "none" : "block").text("Indicated by left-most red line. Drag to change.");
+  }
+  renderLastBinInputs(tr) {
+    const handler = this.editHandler.handler;
+    const q = this.q;
+    const isAuto = !q.last_bin || !Number.isFinite(q.last_bin.start);
+    tr.append("td").style("padding-top", "4px").style("opacity", 0.5).style("vertical-align", "top").text("Last Bin Start");
+    const td1 = tr.append("td").style("padding-left", "15px").style("vertical-align", "top");
+    const radio_div = td1.append("div");
+    const radios = make_radios({
+      holder: radio_div,
+      options: [
+        { label: "Automatic", value: "auto", checked: isAuto },
+        { label: "Fixed", value: "fixed", checked: !isAuto }
+      ],
+      callback: (v) => {
+        if (v == "auto") {
+          delete q.last_bin;
+          edit_div.style("display", "none");
+          handler.density.setBinLines(this.getBoundaryOpts());
+          return;
+        }
+        edit_div.style("display", "inline-block");
+        if (this.dom.last_start_input.property("value") == "") {
+          this.dom.last_start_input.property(
+            "value",
+            this.toDisplay(this.tw.q.last_bin?.start || handler.density_data.max)
+          );
+        }
+        this.setLastBinStart();
+      }
+    });
+    this.dom.fixed_radio = radios.inputs.filter((_, i) => i === 1);
+    const edit_div = tr.append("td").append("div").style("display", isAuto ? "none" : "inline-block");
+    this.dom.last_start_input = edit_div.append("input").attr("type", "number").property("value", Number.isFinite(q.last_bin?.start) ? this.toDisplay(q.last_bin.start) : "").style("width", "100px").on("change", () => this.setLastBinStart());
+    edit_div.append("div").style("font-size", ".6em").style("opacity", 0.5).style("display", handler.density.no_density_data ? "none" : "block").text("Indicated by right-most red line. Drag to change.");
+  }
+  setLastBinStart() {
+    const q = this.q;
+    const { max } = this.editHandler.handler.density_data;
+    const strInput = this.dom.last_start_input.property("value");
+    if (strInput === "") return;
+    const inputValue = this.toStored(Number(strInput));
+    if (q.first_bin && Number(strInput) <= this.toDisplay(q.first_bin.stop)) {
+      window.alert("Last bin start cannot be smaller than first bin stop.");
+      this.dom.last_start_input.property("value", this.toDisplay(max));
+      return;
+    }
+    if (Number(strInput) > this.toDisplay(max)) {
+      window.alert("Last bin start value out of bound.");
+      this.dom.last_start_input.property("value", this.toDisplay(max));
+      return;
+    }
+    if (q.last_bin) q.last_bin.start = inputValue;
+    else
+      q.last_bin = {
+        start: inputValue,
+        stopunbounded: true,
+        stopinclusive: false
+      };
+    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+  }
+  getBoundaryOpts() {
+    const { min, max } = this.editHandler.handler.density_data;
+    const binLinesStop = this.q.last_bin?.start ?? max + Math.abs(this.q.first_bin.stop) - Math.min(min, 0);
+    const boundaryValues = [];
+    for (let i = this.q.first_bin.stop; i <= binLinesStop; i = i + this.q.bin_size) {
+      if (this.q.last_bin?.start === i) break;
+      if (i > binLinesStop) boundaryValues[boundaryValues.length - 1].isLastVisibleLine = true;
+      const isDraggable = i === this.q.first_bin.stop || i === this.q.bin_size - 1;
+      boundaryValues.push({ x: this.toDisplay(i), isDraggable, movesWithLineIndex: !isDraggable ? 0 : -1 });
+    }
+    if (this.q.last_bin) {
+      boundaryValues.push({
+        x: this.toDisplay(this.q.last_bin.start),
+        isDraggable: true,
+        isLastVisibleLine: true,
+        movesWithLineIndex: -1
+      });
+    }
+    return {
+      values: boundaryValues,
+      // the dragged value arrives in display units, matching what the <input>s show
+      callback: (d, value) => {
+        if (d.index === 0) {
+          this.dom.first_stop_input.property("value", value);
+          this.q.first_bin.stop = this.toStored(value);
+        } else {
+          this.dom.last_start_input.property("value", value);
+          if (this.q.last_bin) this.q.last_bin.start = this.toStored(value);
+        }
+      }
+    };
+  }
+  getEditedQ(destroyDom = true) {
+    const bin_size = this.dom.bin_size_input.property("value");
+    const config = {
+      mode: "discrete",
+      type: "regular-bin",
+      startinclusive: this.editHandler.boundaryInclusion == "startinclusive",
+      stopinclusive: this.editHandler.boundaryInclusion == "stopinclusive",
+      bin_size: this.toStored(Number(bin_size)),
+      first_bin: {
+        startunbounded: true,
+        stop: this.toStored(Number(this.dom.first_stop_input.property("value")))
+      },
+      /* rounding formats the stored bin size, so it cannot be derived from the decimals of a
+      converted input. a converted term labels its bins through valueConversion instead */
+      rounding: this.editHandler.handler.density.scaleFactor != 1 ? ".0f" : bin_size.includes(".") && !bin_size.endsWith(".") ? `.${bin_size.split(".")[1].length}f` : ".0f"
+    };
+    if (this.dom.fixed_radio.property("checked")) {
+      config.last_bin = {
+        start: this.toStored(Number(this.dom.last_start_input.property("value"))),
+        stopunbounded: true
+      };
+    }
+    if (destroyDom) {
+      for (const name of Object.keys(this.dom)) {
+        this.dom[name].remove();
+        delete this.dom[name];
+      }
+    }
+    return config;
+  }
+  undoEdits() {
+    this.q = this.getDefaultQ();
+    this.dom.binsTable.selectAll("*").remove();
+    this.renderBinSizeInput(this.dom.binsTable.append("tr"));
+    this.renderFirstBinInput(this.dom.binsTable.append("tr"));
+    this.renderLastBinInputs(this.dom.binsTable.append("tr"));
+    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+  }
+};
+
+export {
+  NumRegularBinEditor
+};
+//# sourceMappingURL=chunk-SCOFWMSE.js.map

package/dist/chunk-SCOFWMSE.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../termsetting/handlers/NumRegularBinEditor.ts"],
+  "sourcesContent": ["import { format } from 'd3-format'\n//import { setDensityPlot } from './density'\nimport { make_radios } from '#dom'\nimport initBinConfig from '#shared/termdb.initbinconfig.js'\nimport { toUserUnit, toStoredUnit } from '#shared/helpers.js'\nimport type { NumRegularBin } from '#tw'\nimport type { NumDiscreteEditor } from './NumDiscreteEditor.ts'\nimport type { BoundaryOpts, BoundaryValue, DraggedLineData } from './NumericDensity.ts'\nimport type { TermSetting } from '../TermSetting.ts'\nimport type { RegularNumericBinConfig } from '#types'\n\n// This is a bin editor for NumDiscreteEditor\n// NumericHandler (handler) -> NumDiscreteEditor (editor) -> NumRegularBinEditor (bin editor)\nexport class NumRegularBinEditor {\n\ttw: NumRegularBin\n\tq!: RegularNumericBinConfig\n\teditHandler: NumDiscreteEditor\n\ttermsetting: TermSetting\n\topts: any\n\tdom: {\n\t\t[elemName: string]: any\n\t} = {}\n\n\tconstructor(editHandler) {\n\t\tthis.editHandler = editHandler\n\t\tthis.opts = editHandler.opts\n\t\tthis.tw = editHandler.tw\n\t\tthis.termsetting = editHandler.termsetting\n\t}\n\n\t/* q holds bin boundaries in the unit the term's values are stored in, while the <input>s and the\n\tdensity plot show them in the term's user-facing unit. toDisplay()/toStored() cross that boundary;\n\tboth are identity functions unless the term declares valueConversion{} */\n\ttoDisplay(v) {\n\t\treturn toUserUnit(v, this.tw.term)\n\t}\n\n\ttoStored(v) {\n\t\treturn toStoredUnit(v, this.tw.term)\n\t}\n\n\trender(div) {\n\t\tthis.tw = this.editHandler.tw as NumRegularBin\n\t\t// see the note in NumCustomBinEditor.render(): keep unapplied edits when returning to this tab\n\t\tconst isRemounting =\n\t\t\t!!this.dom.binsTable && this.editHandler.dom.binsDiv?.node().contains(this.dom.binsTable.node())\n\t\tif (!isRemounting) this.q = this.getDefaultQ()\n\t\tthis.editHandler.handler.density.setBinLines(this.getBoundaryOpts())\n\t\tif (isRemounting) return\n\t\tif (this.dom.binsTable) {\n\t\t\tthis.dom.binsTable.remove()\n\t\t\tdelete this.dom.binsTable\n\t\t}\n\t\tconst binsTable = div.append('table')\n\t\tthis.dom.binsTable = binsTable\n\t\tthis.renderBinSizeInput(binsTable.append('tr'))\n\t\tthis.renderFirstBinInput(binsTable.append('tr'))\n\t\tthis.renderLastBinInputs(binsTable.append('tr'))\n\t}\n\n\tgetDefaultQ(): RegularNumericBinConfig {\n\t\tif (this.tw.q.type == 'regular-bin') return JSON.parse(JSON.stringify(this.tw.q))\n\t\tconst t = this.tw.term\n\t\tconst defaultQ = (this.termsetting.opts.use_bins_less && t.bins?.less) || t.bins?.default\n\t\tif (defaultQ) return JSON.parse(JSON.stringify(defaultQ))\n\t\tconst binConfig = initBinConfig(this.editHandler.handler.density_data)\n\t\treturn typeof binConfig == 'string' ? JSON.parse(binConfig) : binConfig\n\t}\n\n\trenderBinSizeInput(tr: any) {\n\t\tconst handler = this.editHandler.handler\n\t\ttr.append('td').style('margin', '5px').style('opacity', 0.5).text('Bin Size')\n\n\t\tconst { min, max } = handler.density_data\n\t\tconst q = this.q\n\t\t// bin size is a span rather than a point, but converts the same way as one\n\t\tconst origBinSize = this.toDisplay(q.bin_size)\n\n\t\tthis.dom.bin_size_input = tr\n\t\t\t.append('td')\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.attr(\n\t\t\t\t'value',\n\t\t\t\thandler.density.scaleFactor == 1 && 'rounding' in q ? format(q.rounding || '.0f')(q.bin_size) : origBinSize\n\t\t\t)\n\t\t\t.attr('data-testid', 'sjpp-num-reg-bin-editor-size')\n\t\t\t.style('margin-left', '15px')\n\t\t\t.style('width', '100px')\n\t\t\t.style('color', () => (q.bin_size > Math.abs(max - min) ? 'red' : ''))\n\t\t\t.on('change', event => {\n\t\t\t\tconst newValue = this.toStored(Number(event.target.value))\n\t\t\t\t// must validate input value\n\t\t\t\tif (newValue <= 0) {\n\t\t\t\t\twindow.alert('Please enter non-negative bin size.')\n\t\t\t\t\t// must reset value in <input>, otherwise the wrong value will be recorded in self.q upon clicking Submit\n\t\t\t\t\tevent.target.value = origBinSize\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tif ((max - min) / newValue > 100) {\n\t\t\t\t\t// avoid rendering too many svg lines and lock up browser\n\t\t\t\t\twindow.alert('Bin size too small. Try setting a bigger value.')\n\t\t\t\t\tevent.target.value = origBinSize\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tq.bin_size = newValue\n\t\t\t\tthis.dom.bin_size_input.style(\n\t\t\t\t\t'color',\n\t\t\t\t\tq.bin_size > max - min ? 'red' : this.toDisplay(newValue) != origBinSize ? 'green' : ''\n\t\t\t\t)\n\t\t\t\thandler.density.setBinLines(this.getBoundaryOpts())\n\t\t\t})\n\t}\n\n\trenderFirstBinInput(tr: any) {\n\t\tconst handler = this.editHandler.handler\n\t\tconst q = this.q\n\t\tif (!q.first_bin) throw 'missing q.first_bin'\n\n\t\ttr.append('td').style('margin', '5px').style('opacity', 0.5).text('First Bin Stop')\n\n\t\tconst { min, max } = handler.density_data\n\t\tconst origValue = this.toDisplay(q.first_bin.stop)\n\n\t\tthis.dom.first_stop_input = tr\n\t\t\t.append('td')\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.property('value', origValue)\n\t\t\t.style('width', '100px')\n\t\t\t.style('margin-left', '15px')\n\t\t\t.on('change', event => {\n\t\t\t\tconst newValue = this.toStored(Number(event.target.value))\n\t\t\t\t// bounds are compared in the unit the value was typed in, see setLastBinStart()\n\t\t\t\tif (Number(event.target.value) < this.toDisplay(min) || Number(event.target.value) > this.toDisplay(max)) {\n\t\t\t\t\twindow.alert('First bin stop value out of bound.')\n\t\t\t\t\tevent.target.value = origValue\n\t\t\t\t\treturn\n\t\t\t\t}\n\n\t\t\t\t// first_bin should have already been set; adding the check just to skip the tsc error...\n\t\t\t\tthis.q.first_bin.stop = newValue\n\t\t\t\thandler.density.setBinLines(this.getBoundaryOpts())\n\t\t\t})\n\n\t\ttr.append('td')\n\t\t\t.append('div')\n\t\t\t.style('font-size', '.6em')\n\t\t\t.style('opacity', 0.5)\n\t\t\t.style('display', handler.density.no_density_data ? 'none' : 'block')\n\t\t\t.text('Indicated by left-most red line. Drag to change.')\n\t}\n\n\trenderLastBinInputs(tr) {\n\t\tconst handler = this.editHandler.handler\n\t\tconst q = this.q\n\t\t// tell if last bin is automatic (not fixed)\n\t\tconst isAuto = !q.last_bin || !Number.isFinite(q.last_bin.start)\n\n\t\ttr.append('td')\n\t\t\t.style('padding-top', '4px')\n\t\t\t.style('opacity', 0.5)\n\t\t\t.style('vertical-align', 'top')\n\t\t\t.text('Last Bin Start')\n\n\t\tconst td1 = tr.append('td').style('padding-left', '15px').style('vertical-align', 'top')\n\t\tconst radio_div = td1.append('div')\n\n\t\tconst radios = make_radios({\n\t\t\tholder: radio_div,\n\t\t\toptions: [\n\t\t\t\t{ label: 'Automatic', value: 'auto', checked: isAuto },\n\t\t\t\t{ label: 'Fixed', value: 'fixed', checked: !isAuto }\n\t\t\t],\n\t\t\tcallback: v => {\n\t\t\t\tif (v == 'auto') {\n\t\t\t\t\tdelete q.last_bin\n\t\t\t\t\t// if just deleting last_bin.start and keeps q.last_bin{}, density plot may set last_bin.bin='last' and will break bin validation\n\t\t\t\t\tedit_div.style('display', 'none')\n\t\t\t\t\thandler.density.setBinLines(this.getBoundaryOpts())\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\t// v is \"fixed\", to assign a number to self.q.last_bin.start\n\t\t\t\tedit_div.style('display', 'inline-block')\n\t\t\t\tif (this.dom.last_start_input.property('value') == '') {\n\t\t\t\t\t// blank input, fill max\n\t\t\t\t\tthis.dom.last_start_input.property(\n\t\t\t\t\t\t'value',\n\t\t\t\t\t\tthis.toDisplay(this.tw.q.last_bin?.start || handler.density_data.max)\n\t\t\t\t\t)\n\t\t\t\t}\n\t\t\t\tthis.setLastBinStart()\n\t\t\t}\n\t\t})\n\n\t\tthis.dom.fixed_radio = radios.inputs.filter((_, i) => i === 1)\n\n\t\tconst edit_div = tr\n\t\t\t.append('td')\n\t\t\t.append('div')\n\t\t\t.style('display', isAuto ? 'none' : 'inline-block')\n\n\t\tthis.dom.last_start_input = edit_div\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.property('value', Number.isFinite(q.last_bin?.start) ? this.toDisplay(q.last_bin!.start) : '')\n\t\t\t.style('width', '100px')\n\t\t\t.on('change', () => this.setLastBinStart())\n\n\t\tedit_div\n\t\t\t.append('div')\n\t\t\t.style('font-size', '.6em')\n\t\t\t.style('opacity', 0.5)\n\t\t\t.style('display', handler.density.no_density_data ? 'none' : 'block')\n\t\t\t.text('Indicated by right-most red line. Drag to change.')\n\t}\n\n\tsetLastBinStart() {\n\t\tconst q = this.q\n\t\tconst { max } = this.editHandler.handler.density_data\n\t\t// only get value from <input>\n\t\tconst strInput = this.dom.last_start_input.property('value')\n\t\tif (strInput === '') return\n\t\tconst inputValue = this.toStored(Number(strInput))\n\n\t\t/* the bounds are compared in the unit the value was typed in, which is also the unit this\n\t\tinput is filled in. converting a displayed value back is lossy, so the converted maximum is\n\t\tnot the maximum it came from: comparing there would reject the value filled in by the radio\n\t\tcallback above, which is the converted maximum */\n\t\t// TODO first_bin should be required\n\t\tif (q.first_bin && Number(strInput) <= this.toDisplay(q.first_bin.stop)) {\n\t\t\twindow.alert('Last bin start cannot be smaller than first bin stop.')\n\t\t\tthis.dom.last_start_input.property('value', this.toDisplay(max))\n\t\t\treturn\n\t\t}\n\t\tif (Number(strInput) > this.toDisplay(max)) {\n\t\t\twindow.alert('Last bin start value out of bound.')\n\t\t\tthis.dom.last_start_input.property('value', this.toDisplay(max))\n\t\t\treturn\n\t\t}\n\t\tif (q.last_bin) q.last_bin.start = inputValue\n\t\telse\n\t\t\tq.last_bin = {\n\t\t\t\tstart: inputValue,\n\t\t\t\tstopunbounded: true,\n\t\t\t\tstopinclusive: false\n\t\t\t}\n\n\t\tthis.editHandler.handler.density.setBinLines(this.getBoundaryOpts())\n\t}\n\n\tgetBoundaryOpts(): BoundaryOpts {\n\t\tconst { min, max } = this.editHandler.handler.density_data\n\t\tconst binLinesStop = this.q.last_bin?.start ?? max + Math.abs(this.q.first_bin.stop) - Math.min(min, 0)\n\t\tconst boundaryValues: BoundaryValue[] = []\n\t\tfor (let i = this.q.first_bin.stop; i <= binLinesStop; i = i + this.q.bin_size) {\n\t\t\tif (this.q.last_bin?.start === i) break\n\t\t\tif (i > binLinesStop) boundaryValues[boundaryValues.length - 1].isLastVisibleLine = true\n\t\t\tconst isDraggable = i === this.q.first_bin.stop || i === this.q.bin_size - 1\n\t\t\t// non-draggable lines should move with the first bin boundary line\n\t\t\t// the loop runs in stored units; the plot is drawn in display units\n\t\t\tboundaryValues.push({ x: this.toDisplay(i), isDraggable, movesWithLineIndex: !isDraggable ? 0 : -1 })\n\t\t}\n\t\tif (this.q.last_bin) {\n\t\t\tboundaryValues.push({\n\t\t\t\tx: this.toDisplay(this.q.last_bin.start),\n\t\t\t\tisDraggable: true,\n\t\t\t\tisLastVisibleLine: true,\n\t\t\t\tmovesWithLineIndex: -1\n\t\t\t})\n\t\t}\n\n\t\treturn {\n\t\t\tvalues: boundaryValues,\n\t\t\t// the dragged value arrives in display units, matching what the <input>s show\n\t\t\tcallback: (d: DraggedLineData, value) => {\n\t\t\t\t//d.scaledX = Math.round(xscale(value))\n\t\t\t\tif (d.index === 0) {\n\t\t\t\t\tthis.dom.first_stop_input.property('value', value)\n\t\t\t\t\tthis.q.first_bin.stop = this.toStored(value)\n\t\t\t\t} else {\n\t\t\t\t\t// the input belongs to this bin editor; NumericHandler.dom never holds it\n\t\t\t\t\tthis.dom.last_start_input.property('value', value)\n\t\t\t\t\t//if (!this.q.last_bin) this.q.last_bin = {}\n\t\t\t\t\tif (this.q.last_bin) this.q.last_bin.start = this.toStored(value)\n\t\t\t\t\t//middleLines.style('display', (c: any) => (d.draggedX && c.scaledX >= d.draggedX ? 'none' : ''))\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\tgetEditedQ(destroyDom = true): RegularNumericBinConfig {\n\t\tconst bin_size = this.dom.bin_size_input.property('value')\n\t\tconst config: RegularNumericBinConfig = {\n\t\t\tmode: 'discrete',\n\t\t\ttype: 'regular-bin',\n\t\t\tstartinclusive: this.editHandler.boundaryInclusion == 'startinclusive',\n\t\t\tstopinclusive: this.editHandler.boundaryInclusion == 'stopinclusive',\n\t\t\tbin_size: this.toStored(Number(bin_size)),\n\t\t\tfirst_bin: {\n\t\t\t\tstartunbounded: true,\n\t\t\t\tstop: this.toStored(Number(this.dom.first_stop_input.property('value')))\n\t\t\t},\n\t\t\t/* rounding formats the stored bin size, so it cannot be derived from the decimals of a\n\t\t\tconverted input. a converted term labels its bins through valueConversion instead */\n\t\t\trounding:\n\t\t\t\tthis.editHandler.handler.density.scaleFactor != 1\n\t\t\t\t\t? '.0f'\n\t\t\t\t\t: bin_size.includes('.') && !bin_size.endsWith('.')\n\t\t\t\t\t? `.${bin_size.split('.')[1].length}f`\n\t\t\t\t\t: '.0f'\n\t\t}\n\n\t\tif (this.dom.fixed_radio.property('checked')) {\n\t\t\tconfig.last_bin = {\n\t\t\t\tstart: this.toStored(Number(this.dom.last_start_input.property('value'))),\n\t\t\t\tstopunbounded: true\n\t\t\t}\n\t\t}\n\n\t\tif (destroyDom) {\n\t\t\tfor (const name of Object.keys(this.dom)) {\n\t\t\t\tthis.dom[name].remove()\n\t\t\t\tdelete this.dom[name]\n\t\t\t}\n\t\t}\n\n\t\treturn config\n\t}\n\n\tundoEdits() {\n\t\tthis.q = this.getDefaultQ()\n\t\tthis.dom.binsTable.selectAll('*').remove()\n\t\tthis.renderBinSizeInput(this.dom.binsTable.append('tr'))\n\t\tthis.renderFirstBinInput(this.dom.binsTable.append('tr'))\n\t\tthis.renderLastBinInputs(this.dom.binsTable.append('tr'))\n\t\tthis.editHandler.handler.density.setBinLines(this.getBoundaryOpts())\n\t}\n}\n"],
+  "mappings": 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+}