@sjcrh/proteinpaint-client 2.200.0 → 2.202.0

package/dist/chunk-Z2TA7NML.js

@@ -0,0 +1,352 @@
+import {
+  StoreBase,
+  getAppInit,
+  getStoreInit
+} from "./chunk-H6INPPUC.js";
+
+// test/Locator.ts
+var Locator = class _Locator {
+  // arg could be one of the following, must always
+  // - DOM element
+  // - string selector
+  // - d3-selection
+  constructor(arg, opts = {}) {
+    //HTMLElement | SVGElement | SVGGElement | SVGLineElement | SVGRectElement | SVGSVGElement | SVGTextElement
+    this.opts = {
+      intervalWait: 25,
+      maxWait: 3e3
+    };
+    this.pending = [];
+    this.result = [];
+    Object.assign(this.opts, opts);
+    this.setRoot(arg);
+  }
+  // convenience method to allow await Locator.init(elem).whenVisible('')
+  static init(elem) {
+    return new _Locator(elem);
+  }
+  setRoot(arg) {
+    if (typeof arg == "string") {
+      const node = document.body.querySelector(arg);
+      if (!node) throw `missing elem by selector='${arg}'`;
+      this.rootElem = node;
+    } else if (typeof arg.node == "function") {
+      const numMatch = arg.size();
+      if (!numMatch) throw `missing elem from d3-selection`;
+      this.rootElem = arg.node();
+    } else {
+      this.rootElem = arg;
+    }
+    this.pending = [];
+  }
+  root(arg) {
+    if (arg) this.setRoot(arg);
+    return this.rootElem;
+  }
+  // selector: string selector such as '#my-id', '.my-class', `[data-testid='my-id-here']`, `[role='button']`, etc
+  shows(selector, opts = {}) {
+    this.pending.push([
+      shows,
+      {
+        selector,
+        targetCount: opts.count || 1,
+        //'>=1',
+        visibility: opts.visibility ?? true,
+        intervalWait: opts.intervalWait || this.opts.intervalWait,
+        maxWait: opts.maxWait || this.opts.maxWait,
+        attr: opts.attr || {}
+      }
+    ]);
+    return this;
+  }
+  // same argument as this.shows(), but visibility is not checked
+  // and assumes that the elements targeted by the selector are
+  // ready to be queried
+  find(selector) {
+    this.pending.push([find, { selector }]);
+    return this;
+  }
+  // cannot chain another method after get(), since
+  // the retured promise would require wrapping in parentheses
+  //
+  // get()
+  // - run the pending functions in sequence and return the resolved
+  //   queried elems or its properties based on the argument
+  //
+  // Arguments:
+  //  arg: undefined | string | number | callback
+  //
+  // returns
+  //  - no argument: get the matched elements as an array
+  //  - callback function: passes the matched elements to the callback and returns its returned value
+  //  - number: use as index key to return elems[index]
+  //  - string: see the processing in the
+  async get(arg) {
+    const pending = this.pending;
+    this.pending = [];
+    let elems = [this.rootElem];
+    for (const [fxn, opts] of pending) {
+      elems = await fxn(elems, opts);
+    }
+    if (!arguments.length || arg === void 0) return elems;
+    if (typeof arg === "function") return arg(elems);
+    if (typeof arg === "number") return elems[arg];
+    if (typeof arg === "string") {
+      if (arg == "length") return elems.length;
+      const key = arg.slice(1);
+      if (!key) return elems;
+      const char = arg[0];
+      if (char === ".") return elems.map((elem) => elem[key]);
+      if (char === "@") return elems.map((elem) => elem.getAttribute(key));
+      if (char === ":") return elems.map((elem) => elem.style[key]);
+    }
+    throw `invalid Locator.get() argument='${arg}'`;
+  }
+  // propName: string property name, can be dot-separated like 'style.padding'
+  // value: string, number, boolean, any valid value for the given property name
+  async set(propName, value2) {
+    if (!propName) throw `invalid Locator.set() propName='${propName}'`;
+    const keyChain = propName.split(".");
+    const lastKey = keyChain.pop();
+    if (!lastKey) throw `invalid Locator.set() propName='${propName}'`;
+    const elems = await this.get();
+    for (const elem of elems) {
+      let obj = elem;
+      for (const key of keyChain) obj = obj[key];
+      obj[lastKey] = value2;
+    }
+    return elems;
+  }
+  /*** convenient aliased methods for .get(arg) ***/
+  async length() {
+    return await this.get("length");
+  }
+  async value(val) {
+    if (arguments.length) return await this.set("value", val);
+    return await this.get(".value");
+  }
+  async text(str) {
+    if (arguments.length) return await this.set("innerText", str);
+    return await this.get(".innerText");
+  }
+  hides(selector) {
+    return this.shows(selector, { visibility: false });
+  }
+  async click(arg) {
+    const elems = await this.get(arg);
+    const arr = Array.isArray(elems) ? elems : [elems];
+    for (const elem of arr) {
+      const box = elem.getBoundingClientRect();
+      const clientX = box.x + 0.5 * box.width;
+      const clientY = box.y + box.height;
+      elem.dispatchEvent(new MouseEvent("click", { bubbles: true, clientX, clientY }));
+    }
+    return elems;
+  }
+};
+async function shows(elems, opts) {
+  return new Promise((resolve) => {
+    const { selector, targetCount, intervalWait, maxWait, visibility, attr } = opts;
+    const matchedElems = /* @__PURE__ */ new Set();
+    let elapsed = 0, pending = false;
+    const i = setInterval(() => {
+      if (pending) return;
+      pending = true;
+      for (const elem of elems) {
+        for (const descendant of elem.querySelectorAll(selector)) {
+          if (matchedElems.has(descendant)) continue;
+          if (descendant.checkVisibility() === visibility) {
+            if (!attr) matchedElems.add(descendant);
+            else {
+              const kvEntries = Object.entries(attr);
+              const matchedKeys = [];
+              for (const [key, value2] of kvEntries) {
+                if (elem.getAttribute(key) !== value2) matchedKeys.push(key);
+              }
+              if (matchedKeys.length === kvEntries.length) matchedElems.add(descendant);
+            }
+          }
+        }
+      }
+      elapsed += intervalWait;
+      if (matchedElems.size >= targetCount || elapsed > maxWait) {
+        clearInterval(i);
+        resolve([...matchedElems]);
+      }
+      pending = false;
+    }, intervalWait);
+  });
+}
+async function find(elems, opts) {
+  for (const elem of elems) {
+    const match = elem.querySelector(opts.selector);
+    if (match) {
+      return [match];
+    }
+  }
+  return [];
+}
+
+// test/test.helpers.js
+function sleep(ms) {
+  return new Promise((resolve) => setTimeout(resolve, ms));
+}
+async function detectLst(_opts = {}) {
+  const defaults = {
+    target: _opts.target || _opts.elem,
+    selector: _opts.selector,
+    maxTime: 12e3,
+    // default is increased from 5 to 12 specifically for gdc live tests with high latency
+    observe: {
+      childList: true,
+      subtree: true,
+      attributes: true,
+      characterData: true
+    }
+  };
+  if (!_opts.matcher) {
+    defaults.count = 1;
+    defaults.matchAs = "=";
+  }
+  const opts = Object.assign(defaults, _opts);
+  if (!opts.target) throw `missing opts.target (alias for opts.elem)`;
+  if (!opts.trigger && opts.count > 0) await sleep(0);
+  const start = Date.now();
+  return new Promise((resolve, reject) => {
+    if (!opts.matcher && opts.selector) {
+      const elems = opts.target.querySelectorAll(opts.selector);
+      const matched = matchedCount(elems.length, opts);
+      if (matched) {
+        resolve([...elems]);
+        return;
+      }
+    }
+    const callback = (mutations) => {
+      const elems = opts.selector ? [...opts.target.querySelectorAll(opts.selector)] : [opts.target];
+      const mutated = mutations.filter((m) => elems.includes(m.target));
+      if (!mutated.length && opts.count !== 0) return;
+      const matched = opts.matcher ? opts.matcher(mutated, observer) : matchedCount(elems.length, opts);
+      const expired = Date.now() - start > opts.maxTime;
+      if (matched || expired) {
+        observer.disconnect();
+        if (t) clearTimeout(t);
+        if (matched) resolve(Array.isArray(matched) ? matched : elems);
+        else reject(`test exceeded maxTime=${opts.maxTime}`);
+      }
+    };
+    const observer = new MutationObserver(callback);
+    observer.observe(opts.target, opts.observe);
+    let t;
+    if (opts.maxTime) {
+      t = setTimeout(() => {
+        if (opts.count === 0) {
+        } else reject(`the elem '${opts.target}' did not render within ${opts.maxTime} milliseconds`);
+      }, opts.maxTime);
+    }
+    if (opts.trigger) opts.trigger();
+  });
+}
+function matchedCount(actual, opts) {
+  const expected = opts.count;
+  switch (opts.matchAs) {
+    case "=":
+      return actual === expected;
+    case "<":
+      return actual < expected;
+    case "<=":
+      return actual <= expected;
+    case ">":
+      return actual > expected;
+    case ">=":
+      return actual >= expected;
+    default:
+      throw `unknown matchAs='${opts.matchAs}'`;
+  }
+}
+async function detectStyle(opts) {
+  if (!opts.observe) opts.observe = {};
+  opts.observe.attributes = true;
+  opts.observe.attributeFilter = ["style"];
+  const lst = await detectLst(opts);
+  return lst;
+}
+async function detectGt(opts) {
+  opts.matchAs = ">";
+  const lst = await detectLst(opts);
+  return lst;
+}
+async function detectGte(opts) {
+  opts.matchAs = ">=";
+  const lst = await detectLst(opts);
+  return lst;
+}
+async function detectOne(opts) {
+  opts.count = 1;
+  const lst = await detectLst(opts);
+  return lst[0];
+}
+async function whenVisible(elem, opts = {}) {
+  const intervalWait = 25;
+  const totalWait = opts.wait || 5e3;
+  const numRepeats = totalWait / intervalWait;
+  return new Promise((resolve, reject) => {
+    let j = 0;
+    const i = setInterval(() => {
+      if (elem.style.display != "none") {
+        clearInterval(i);
+        resolve(elem);
+      } else {
+        j++;
+        if (j > numRepeats) {
+          reject(`elem did not become visible within 5 seconds`);
+          clearInterval(i);
+        }
+      }
+    }, intervalWait);
+  });
+}
+var TestAppStore = class _TestAppStore extends StoreBase {
+  static type = "store";
+  constructor(opts) {
+    super(opts);
+    this.type = _TestAppStore.type;
+    this.defaultState = {
+      debug: true
+    };
+  }
+  async init() {
+  }
+};
+var storeInit = getStoreInit(TestAppStore);
+var TestApp = class {
+  static type = "app";
+  constructor(opts) {
+    this.type = "app";
+    this.opts = opts;
+    this.fetchOpts = opts.fetchOpts;
+  }
+  async init() {
+    try {
+      this.store = await storeInit({ app: this.api, state: this.opts.state });
+      this.state = await this.store.copyState();
+      if (this.opts.dom) this.dom = this.opts.dom;
+      await this.api.dispatch();
+    } catch (e) {
+      if (e.stack) console.log(e.stack);
+      else throw `TestApp Error: ${e}`;
+    }
+  }
+};
+var testAppInit = getAppInit(TestApp);
+
+export {
+  Locator,
+  sleep,
+  detectLst,
+  detectStyle,
+  detectGt,
+  detectGte,
+  detectOne,
+  whenVisible
+};
+//# sourceMappingURL=chunk-Z2TA7NML.js.map

package/dist/chunk-Z7U74YGW.js

@@ -0,0 +1,222 @@
+import {
+  appInit
+} from "./chunk-E732F6XI.js";
+import {
+  getDefaultViolinSettings
+} from "./chunk-OMIUJ7JT.js";
+import {
+  select_default
+} from "./chunk-I6Y4O3RR.js";
+
+// plots/regression.inputs.values.table.js
+var row_hover_bgcolor = "#fff6dc";
+var InputValuesTable = class {
+  constructor(opts) {
+    this.opts = opts;
+    this.input = opts.input;
+    setRenderers(this);
+    this.setDOM(opts.holder);
+  }
+  main() {
+    try {
+      const term = this.input.term;
+      if (!term || !this.input.termStatus) {
+        this.dom.holder.style("display", "none");
+        this.dom.loading_div.style("display", "none");
+        return;
+      } else if (term) {
+        this.dom.holder.style("display", "block");
+        this.dom.loading_div.style("display", "block");
+        this.updateValueCount();
+        this.dom.loading_div.style("display", "none");
+        this.render();
+        return;
+      }
+    } catch (e) {
+      this.dom.loading_div.style("display", "none");
+      throw e;
+    }
+  }
+  updateValueCount() {
+    const i = this.input;
+    try {
+      if (i.pill && i.pill.validateQ) {
+        i.pill.validateQ({
+          term: i.term.term,
+          q: i.term.q,
+          sampleCounts: i.termStatus.sampleCounts
+        });
+      }
+    } catch (e) {
+      i.term.error = e;
+    }
+  }
+};
+function setRenderers(self) {
+  self.setDOM = (holder) => {
+    self.dom = {
+      holder: holder.style("margin", "10px").style("font-size", ".8em").style("text-align", "left").style("color", "#999"),
+      loading_div: holder.append("div").text("Loading..").style("display", "none"),
+      top_info_div: holder.append("div").style("padding-bottom", "5px"),
+      violin_div: holder.append("div").style("color", "black").style("padding-top", "5px"),
+      table_div: holder.append("table").style("margin", "5px 0px 15px 0px").style("border-collapse", "collapse").style("color", "black"),
+      bottom_info_div: holder.append("div"),
+      excluded_div: holder.append("table").style("display", "none").style("margin", "5px 10px").style("border-collapse", "collapse")
+    };
+  };
+  self.render = async () => {
+    const input = self.input;
+    renderTopInfo(input);
+    await renderValuesTable(input);
+    renderBottomInfo(input);
+    renderExcludedValues(input);
+  };
+  function renderTopInfo(input) {
+    if (input.termStatus.topInfoStatus?.length) {
+      self.dom.top_info_div.style("display", "block").html(input.termStatus.topInfoStatus.join("<br>"));
+    } else {
+      self.dom.top_info_div.style("display", "none");
+    }
+  }
+  async function renderValuesTable(input) {
+    if (input.term.q.mode == "continuous" || input.term.q.mode == "spline") {
+      self.dom.violin_div.style("display", "block");
+      self.dom.table_div.style("display", "none");
+      if (self.plotAppApi) {
+        const action = {
+          type: "app_refresh",
+          state: { termfilter: structuredClone(self.input.parent.state?.termfilter) },
+          subactions: [
+            {
+              type: "plot_edit",
+              id: self.violinApi.id,
+              config: {
+                term: input.term
+              }
+            }
+          ]
+        };
+        self.plotAppApi.dispatch(action);
+      } else {
+        const opts = {
+          holder: self.dom.violin_div,
+          vocabApi: self.input.parent.app.vocabApi,
+          state: {
+            vocab: {
+              genome: self.input.parent.app.vocabApi.genome,
+              dslabel: self.input.parent.app.vocabApi.dslabel
+            },
+            termfilter: structuredClone(self.input.parent.state?.termfilter),
+            plots: [
+              {
+                chartType: "violin",
+                term: input.term,
+                settings: {
+                  violin: getDefaultViolinSettings(null, {
+                    svgw: 350,
+                    axisHeight: 25,
+                    rightMargin: 10,
+                    datasymbol: "rug",
+                    radius: 8,
+                    plotThickness: 80
+                  })
+                }
+              }
+            ]
+          },
+          // global options for plotAppApi
+          // opts.violin will apply to all violin plots within the plotApp
+          // rx will pass options by component type, which are not tracked in state
+          // examples are callbacks, event listeners, etc
+          violin: {
+            mode: "minimal"
+          }
+        };
+        self.plotAppApi = await appInit(opts);
+        const plotId = self.plotAppApi.getState().plots[0].id;
+        self.violinApi = self.plotAppApi.getComponents(`plots.${plotId}`);
+      }
+    } else {
+      self.dom.violin_div.style("display", "none");
+      const data = input.termStatus.sampleCounts;
+      if (!data || !data.length) {
+        self.dom.table_div.style("display", "none");
+        return;
+      }
+      self.dom.table_div.style("display", "block").attr("data-testid", "sjpp-regression-barchart");
+      const l = self.input.orderedLabels;
+      const sortFxn = l && l.length ? (a, b) => l.indexOf(a.label) - l.indexOf(b.label) : (a, b) => b.samplecount - a.samplecount;
+      const tr_data = data.sort(sortFxn);
+      const maxCount = Math.max(...tr_data.map((v) => v.samplecount), 0);
+      tr_data.forEach((v) => v.bar_width_frac = Number((1 - (maxCount - v.samplecount) / maxCount).toFixed(4)));
+      self.dom.table_div.selectAll("tr").remove();
+      const trs = self.dom.table_div.selectAll("tr").data(tr_data, (b) => b.key);
+      trs.enter().append("tr").each(trEnter);
+    }
+  }
+  function renderBottomInfo(input) {
+    if (input.termStatus.bottomSummaryStatus) {
+      self.dom.bottom_info_div.style("display", "block").html(input.termStatus.bottomSummaryStatus);
+    } else {
+      self.dom.bottom_info_div.style("display", "none");
+    }
+  }
+  function renderExcludedValues(input) {
+    const data = input.termStatus.excludeCounts;
+    if (!data || !data.length) {
+      self.dom.excluded_div.style("display", "none");
+      return;
+    }
+    self.dom.excluded_div.style("display", "block").selectAll("tr").remove();
+    const trs = self.dom.excluded_div.selectAll("tr").data(data, (b) => b.key);
+    trs.enter().append("tr").each(trEnter);
+    self.dom.excluded_div.selectAll("td").style("color", "#999");
+  }
+  function trEnter(item) {
+    const tr = select_default(this);
+    const input = this.parentNode.__data__;
+    const t = input.term;
+    const maxBarWidth = 150;
+    tr.style("text-align", "left").style("cursor", input.termStatus.allowToSelectRefGrp ? "pointer" : "default");
+    const tdSpacing = "1px 10px 1px 0px";
+    tr.append("td").style("padding", tdSpacing).style("text-align", "left").style("color", "black").text(item.samplecount !== void 0 ? "n=" + item.samplecount : "");
+    tr.append("td").style("padding", tdSpacing).style("text-align", "left").style("color", "black").text(item.label);
+    const bar_td = tr.append("td").style("padding", tdSpacing);
+    const barWidth = maxBarWidth * item.bar_width_frac;
+    bar_td.append("div").style("margin", tdSpacing).style("width", barWidth + "px").style("height", "15px").style("background-color", "#ddd");
+    addTrBehavior({ input, item, tr, rendered: false });
+  }
+  function addTrBehavior({ input, item, tr, rendered }) {
+    if (!item.bar_width_frac) return;
+    const t = input.term;
+    const hover_flag = input.termStatus.allowToSelectRefGrp;
+    let ref_text;
+    if (rendered) {
+      tr.style("background", "white");
+      ref_text = select_default(tr.node().lastChild).select("div").style("display", item.key === t.refGrp && hover_flag ? "inline-block" : "none").style("border", item.key === t.refGrp && hover_flag ? "1px solid #bbb" : "");
+    } else if (input.term.q.mode != "cutoff") {
+      const reference_td = tr.append("td").style("padding", "1px 5px").style("text-align", "left");
+      ref_text = reference_td.append("div").style("display", item.key === t.refGrp && hover_flag ? "inline-block" : "none").style("padding", "2px 10px").style("border", item.key === t.refGrp && hover_flag ? "1px solid #bbb" : "").style("border-radius", "10px").style("color", "#999").style("font-size", ".7em").text("REFERENCE");
+      if (hover_flag) {
+        tr.on("mouseover", () => {
+          if (t.refGrp !== item.key) {
+            tr.style("background", row_hover_bgcolor);
+            ref_text.style("display", "inline-block").style("border", "").text("Set as reference");
+          } else tr.style("background", "white");
+        }).on("mouseout", () => {
+          tr.style("background", "white");
+          if (t.refGrp !== item.key) ref_text.style("display", "none");
+        }).on("click", () => {
+          t.refGrp = item.key;
+          ref_text.style("border", "1px solid #bbb").text("REFERENCE");
+          self.opts.callback(t);
+        });
+      }
+    }
+  }
+}
+
+export {
+  InputValuesTable
+};
+//# sourceMappingURL=chunk-Z7U74YGW.js.map

package/dist/chunk-Z7U74YGW.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/regression.inputs.values.table.js"],
+  "sourcesContent": ["import { select } from 'd3-selection'\nimport { getDefaultViolinSettings } from './violin.js'\nimport { appInit } from './plot.app'\n\n/*\n\tdom elements for values table\n\tholder // main holder\n\t\tloading_div // loading message while updating term info\n\t\ttop_info_div // top info about scale + knots + promopt to select ref group\n\t\tviolin_div // violin plot of values (used when .mode=continuous)\n\t\ttable_div // tabular bar chart of values (used when .mode != continuous)\n\t\tbottom_info_div // total included and excluded samples\n\t\texcluded_div // excluded values with samplecount\n*/\n\nconst row_hover_bgcolor = '#fff6dc'\n\nexport class InputValuesTable {\n\tconstructor(opts) {\n\t\t// opts {holder, input, callback}\n\t\tthis.opts = opts\n\t\tthis.input = opts.input\n\t\tsetRenderers(this)\n\t\tthis.setDOM(opts.holder)\n\t}\n\n\tmain() {\n\t\ttry {\n\t\t\tconst term = this.input.term\n\t\t\t// may allow the values table even if there is a variable error,\n\t\t\t// in case it helps clarify the error message such as having\n\t\t\t// not exactly two samplecount bars available for a binary outcome term\n\n\t\t\tif (!term || !this.input.termStatus) {\n\t\t\t\tthis.dom.holder.style('display', 'none')\n\t\t\t\tthis.dom.loading_div.style('display', 'none')\n\t\t\t\treturn\n\t\t\t} else if (term) {\n\t\t\t\tthis.dom.holder.style('display', 'block')\n\t\t\t\tthis.dom.loading_div.style('display', 'block')\n\t\t\t\tthis.updateValueCount()\n\t\t\t\tthis.dom.loading_div.style('display', 'none')\n\t\t\t\tthis.render()\n\t\t\t\treturn\n\t\t\t}\n\t\t} catch (e) {\n\t\t\tthis.dom.loading_div.style('display', 'none')\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tupdateValueCount() {\n\t\tconst i = this.input\n\t\ttry {\n\t\t\t/* TODO: may need to move validateQ out of a ts.pill */\n\t\t\tif (i.pill && i.pill.validateQ) {\n\t\t\t\ti.pill.validateQ({\n\t\t\t\t\tterm: i.term.term,\n\t\t\t\t\tq: i.term.q,\n\t\t\t\t\tsampleCounts: i.termStatus.sampleCounts\n\t\t\t\t})\n\t\t\t}\n\t\t} catch (e) {\n\t\t\ti.term.error = e\n\t\t}\n\t}\n}\n\nfunction setRenderers(self) {\n\tself.setDOM = holder => {\n\t\tself.dom = {\n\t\t\tholder: holder\n\t\t\t\t.style('margin', '10px')\n\t\t\t\t.style('font-size', '.8em')\n\t\t\t\t.style('text-align', 'left')\n\t\t\t\t.style('color', '#999'),\n\n\t\t\tloading_div: holder.append('div').text('Loading..').style('display', 'none'),\n\n\t\t\ttop_info_div: holder.append('div').style('padding-bottom', '5px'),\n\n\t\t\tviolin_div: holder.append('div').style('color', 'black').style('padding-top', '5px'),\n\n\t\t\ttable_div: holder\n\t\t\t\t.append('table')\n\t\t\t\t.style('margin', '5px 0px 15px 0px')\n\t\t\t\t.style('border-collapse', 'collapse')\n\t\t\t\t.style('color', 'black'),\n\n\t\t\tbottom_info_div: holder.append('div'),\n\n\t\t\texcluded_div: holder\n\t\t\t\t.append('table')\n\t\t\t\t.style('display', 'none')\n\t\t\t\t.style('margin', '5px 10px')\n\t\t\t\t.style('border-collapse', 'collapse')\n\t\t}\n\t}\n\n\tself.render = async () => {\n\t\tconst input = self.input\n\n\t\t// render top info\n\t\trenderTopInfo(input)\n\n\t\t// render included values\n\t\tawait renderValuesTable(input)\n\n\t\t// render bottom info\n\t\trenderBottomInfo(input)\n\n\t\t// render excluded values\n\t\trenderExcludedValues(input)\n\t}\n\n\tfunction renderTopInfo(input) {\n\t\tif (input.termStatus.topInfoStatus?.length) {\n\t\t\tself.dom.top_info_div.style('display', 'block').html(input.termStatus.topInfoStatus.join('<br>'))\n\t\t} else {\n\t\t\tself.dom.top_info_div.style('display', 'none')\n\t\t}\n\t}\n\n\tasync function renderValuesTable(input) {\n\t\tif (input.term.q.mode == 'continuous' || input.term.q.mode == 'spline') {\n\t\t\t// continuous or spline mode\n\t\t\t// render values as violin plot\n\t\t\tself.dom.violin_div.style('display', 'block')\n\t\t\tself.dom.table_div.style('display', 'none')\n\t\t\tif (self.plotAppApi) {\n\t\t\t\t// violin plot already created, refresh the plot\n\t\t\t\tconst action = {\n\t\t\t\t\ttype: 'app_refresh',\n\t\t\t\t\tstate: { termfilter: structuredClone(self.input.parent.state?.termfilter) },\n\t\t\t\t\tsubactions: [\n\t\t\t\t\t\t{\n\t\t\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\t\t\tid: self.violinApi.id,\n\t\t\t\t\t\t\tconfig: {\n\t\t\t\t\t\t\t\tterm: input.term\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t]\n\t\t\t\t}\n\t\t\t\tself.plotAppApi.dispatch(action)\n\t\t\t} else {\n\t\t\t\t// violin plot does not exist, create the plot\n\t\t\t\tconst opts = {\n\t\t\t\t\tholder: self.dom.violin_div,\n\t\t\t\t\tvocabApi: self.input.parent.app.vocabApi,\n\t\t\t\t\tstate: {\n\t\t\t\t\t\tvocab: {\n\t\t\t\t\t\t\tgenome: self.input.parent.app.vocabApi.genome,\n\t\t\t\t\t\t\tdslabel: self.input.parent.app.vocabApi.dslabel\n\t\t\t\t\t\t},\n\t\t\t\t\t\ttermfilter: structuredClone(self.input.parent.state?.termfilter),\n\t\t\t\t\t\tplots: [\n\t\t\t\t\t\t\t{\n\t\t\t\t\t\t\t\tchartType: 'violin',\n\t\t\t\t\t\t\t\tterm: input.term,\n\t\t\t\t\t\t\t\tsettings: {\n\t\t\t\t\t\t\t\t\tviolin: getDefaultViolinSettings(null, {\n\t\t\t\t\t\t\t\t\t\tsvgw: 350,\n\t\t\t\t\t\t\t\t\t\taxisHeight: 25,\n\t\t\t\t\t\t\t\t\t\trightMargin: 10,\n\t\t\t\t\t\t\t\t\t\tdatasymbol: 'rug',\n\t\t\t\t\t\t\t\t\t\tradius: 8,\n\t\t\t\t\t\t\t\t\t\tplotThickness: 80\n\t\t\t\t\t\t\t\t\t})\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t]\n\t\t\t\t\t},\n\t\t\t\t\t// global options for plotAppApi\n\t\t\t\t\t// opts.violin will apply to all violin plots within the plotApp\n\t\t\t\t\t// rx will pass options by component type, which are not tracked in state\n\t\t\t\t\t// examples are callbacks, event listeners, etc\n\t\t\t\t\tviolin: {\n\t\t\t\t\t\tmode: 'minimal'\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tself.plotAppApi = await appInit(opts)\n\t\t\t\tconst plotId = self.plotAppApi.getState().plots[0].id\n\t\t\t\tself.violinApi = self.plotAppApi.getComponents(`plots.${plotId}`)\n\t\t\t}\n\t\t} else {\n\t\t\t// mode is neither continuous nor spline\n\t\t\t// render values as a tabular bar chart\n\t\t\tself.dom.violin_div.style('display', 'none')\n\t\t\tconst data = input.termStatus.sampleCounts\n\t\t\tif (!data || !data.length) {\n\t\t\t\tself.dom.table_div.style('display', 'none')\n\t\t\t\treturn\n\t\t\t}\n\n\t\t\tself.dom.table_div.style('display', 'block').attr('data-testid', 'sjpp-regression-barchart')\n\t\t\tconst l = self.input.orderedLabels\n\t\t\tconst sortFxn =\n\t\t\t\tl && l.length ? (a, b) => l.indexOf(a.label) - l.indexOf(b.label) : (a, b) => b.samplecount - a.samplecount\n\t\t\tconst tr_data = data.sort(sortFxn)\n\n\t\t\tconst maxCount = Math.max(...tr_data.map(v => v.samplecount), 0)\n\t\t\ttr_data.forEach(v => (v.bar_width_frac = Number((1 - (maxCount - v.samplecount) / maxCount).toFixed(4))))\n\n\t\t\tself.dom.table_div.selectAll('tr').remove()\n\t\t\tconst trs = self.dom.table_div.selectAll('tr').data(tr_data, b => b.key)\n\n\t\t\t//trs.exit().remove()\n\t\t\t//trs.each(trUpdate)\n\t\t\ttrs.enter().append('tr').each(trEnter)\n\t\t}\n\t}\n\n\tfunction renderBottomInfo(input) {\n\t\tif (input.termStatus.bottomSummaryStatus) {\n\t\t\tself.dom.bottom_info_div.style('display', 'block').html(input.termStatus.bottomSummaryStatus)\n\t\t} else {\n\t\t\tself.dom.bottom_info_div.style('display', 'none')\n\t\t}\n\t}\n\n\tfunction renderExcludedValues(input) {\n\t\tconst data = input.termStatus.excludeCounts\n\t\tif (!data || !data.length) {\n\t\t\tself.dom.excluded_div.style('display', 'none')\n\t\t\treturn\n\t\t}\n\t\tself.dom.excluded_div.style('display', 'block').selectAll('tr').remove()\n\t\tconst trs = self.dom.excluded_div.selectAll('tr').data(data, b => b.key)\n\n\t\t//trs.exit().remove()\n\t\t//trs.each(trUpdate)\n\t\ttrs.enter().append('tr').each(trEnter)\n\n\t\tself.dom.excluded_div.selectAll('td').style('color', '#999')\n\t}\n\n\tfunction trEnter(item) {\n\t\tconst tr = select(this)\n\t\tconst input = this.parentNode.__data__\n\t\tconst t = input.term\n\t\tconst maxBarWidth = 150\n\n\t\ttr.style('text-align', 'left').style('cursor', input.termStatus.allowToSelectRefGrp ? 'pointer' : 'default')\n\n\t\tconst tdSpacing = '1px 10px 1px 0px'\n\t\t// sample count td\n\t\ttr.append('td')\n\t\t\t.style('padding', tdSpacing)\n\t\t\t.style('text-align', 'left')\n\t\t\t.style('color', 'black')\n\t\t\t.text(item.samplecount !== undefined ? 'n=' + item.samplecount : '')\n\n\t\t// label td\n\t\ttr.append('td').style('padding', tdSpacing).style('text-align', 'left').style('color', 'black').text(item.label)\n\n\t\t// sample count bar td\n\t\tconst bar_td = tr.append('td').style('padding', tdSpacing)\n\n\t\t// bar_width\n\t\tconst barWidth = maxBarWidth * item.bar_width_frac\n\t\tbar_td\n\t\t\t.append('div')\n\t\t\t.style('margin', tdSpacing)\n\t\t\t.style('width', barWidth + 'px')\n\t\t\t.style('height', '15px')\n\t\t\t.style('background-color', '#ddd')\n\n\t\taddTrBehavior({ input, item, tr, rendered: false })\n\t}\n\n\t/*\n\t// TODO: to use this function, need to add code that will take into account the order of the rows\n\tfunction trUpdate(item) {\n\t\tselect(this.firstChild).text(item.samplecount !== undefined ? 'n=' + item.samplecount : '')\n\t\tselect(this.firstChild.nextSibling).text(item.label)\n\n\t\tconst input = this.parentNode.__data__\n\t\tconst t = input.term\n\t\tlet rendered = true\n\t\tif ((t.q.mode == 'discrete' || t.q.mode == 'binary') && this.childNodes.length < 4) rendered = false\n\t\taddTrBehavior({ input, item, tr: select(this), rendered })\n\t}\n\t*/\n\n\tfunction addTrBehavior({ input, item, tr, rendered }) {\n\t\t// don't add tr effects for excluded values\n\t\tif (!item.bar_width_frac) return\n\n\t\tconst t = input.term\n\t\tconst hover_flag = input.termStatus.allowToSelectRefGrp\n\t\tlet ref_text\n\n\t\tif (rendered) {\n\t\t\ttr.style('background', 'white')\n\t\t\tref_text = select(tr.node().lastChild)\n\t\t\t\t.select('div')\n\t\t\t\t.style('display', item.key === t.refGrp && hover_flag ? 'inline-block' : 'none')\n\t\t\t\t.style('border', item.key === t.refGrp && hover_flag ? '1px solid #bbb' : '')\n\t\t} else if (input.term.q.mode != 'cutoff') {\n\t\t\tconst reference_td = tr.append('td').style('padding', '1px 5px').style('text-align', 'left')\n\n\t\t\tref_text = reference_td\n\t\t\t\t.append('div')\n\t\t\t\t.style('display', item.key === t.refGrp && hover_flag ? 'inline-block' : 'none')\n\t\t\t\t.style('padding', '2px 10px')\n\t\t\t\t.style('border', item.key === t.refGrp && hover_flag ? '1px solid #bbb' : '')\n\t\t\t\t.style('border-radius', '10px')\n\t\t\t\t.style('color', '#999')\n\t\t\t\t.style('font-size', '.7em')\n\t\t\t\t.text('REFERENCE')\n\n\t\t\tif (hover_flag) {\n\t\t\t\ttr.on('mouseover', () => {\n\t\t\t\t\tif (t.refGrp !== item.key) {\n\t\t\t\t\t\ttr.style('background', row_hover_bgcolor)\n\t\t\t\t\t\tref_text.style('display', 'inline-block').style('border', '').text('Set as reference')\n\t\t\t\t\t} else tr.style('background', 'white')\n\t\t\t\t})\n\t\t\t\t\t.on('mouseout', () => {\n\t\t\t\t\t\ttr.style('background', 'white')\n\t\t\t\t\t\tif (t.refGrp !== item.key) ref_text.style('display', 'none')\n\t\t\t\t\t})\n\t\t\t\t\t.on('click', () => {\n\t\t\t\t\t\tt.refGrp = item.key\n\t\t\t\t\t\tref_text.style('border', '1px solid #bbb').text('REFERENCE')\n\t\t\t\t\t\t// below will save to state, ui code should react to it\n\t\t\t\t\t\tself.opts.callback(t)\n\t\t\t\t\t})\n\t\t\t}\n\t\t}\n\t}\n}\n"],
+  "mappings": 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+}