@sjcrh/proteinpaint-client 2.193.0 → 2.195.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-GTD3AXGT.js +1373 -0
- package/dist/AIProjectAdmin-ALMSVHFX.js +958 -0
- package/dist/AppHeader-RK2YRITI.js +835 -0
- package/dist/BoxPlot-6ZXLPA5Q.js +1217 -0
- package/dist/CorrelationVolcano-PJB3QCXB.js +619 -0
- package/dist/DE-MEWV5RTV.js +95 -0
- package/dist/DEinput-I62VHD2U.js +301 -0
- package/dist/DEinput-I62VHD2U.js.map +7 -0
- package/dist/DifferentialAnalysis-7L3CDPVB.js +245 -0
- package/dist/Disco-FCS7B5DO.js +3297 -0
- package/dist/Disco.UI-BFJ5XFAT.js +249 -0
- package/dist/DmrPlot-362PCE7L.js +642 -0
- package/dist/GB-SX4JENAW.js +1353 -0
- package/dist/GB-SX4JENAW.js.map +7 -0
- package/dist/GeneExpInput-EHWHQTRV.js +367 -0
- package/dist/HicApp-UE4DCUKX.js +2250 -0
- package/dist/IDCViewer-EDF5XJ63.js +10455 -0
- package/dist/IDCViewer-EDF5XJ63.js.map +7 -0
- package/dist/NumBinaryEditor-3TAAJNYY.js +271 -0
- package/dist/NumBinaryEditor.unit.spec-6776472M.js +286 -0
- package/dist/NumContEditor-WLFXTY4M.js +109 -0
- package/dist/NumContEditor.unit.spec-KG5SCOIQ.js +169 -0
- package/dist/NumCustomBinEditor-EKKNCLKI.js +38 -0
- package/dist/NumCustomBinEditor.unit.spec-LSLSKQDW.js +284 -0
- package/dist/NumDiscreteEditor-X2MLECNT.js +179 -0
- package/dist/NumDiscreteEditor.unit.spec-BZG7P4C7.js +202 -0
- package/dist/NumRegularBinEditor-CAGJ4ZWD.js +38 -0
- package/dist/NumRegularBinEditor.unit.spec-GJSJC4DK.js +227 -0
- package/dist/NumSplineEditor-ND3RC7R6.js +198 -0
- package/dist/NumSplineEditor.unit.spec-F67JQKPY.js +199 -0
- package/dist/NumericDensity-VW7NIZU7.js +38 -0
- package/dist/NumericDensity.unit.spec-YHIMU23C.js +221 -0
- package/dist/NumericHandler-HCU6B2XV.js +39 -0
- package/dist/NumericHandler.unit.spec-6GVWAUED.js +219 -0
- package/dist/ProteomeInput-SONQSTVD.js +396 -0
- package/dist/RunChart2-ZLBNG4JF.js +758 -0
- package/dist/SC-YDRE37LP.js +1127 -0
- package/dist/Volcano-27ZERHXI.js +1379 -0
- package/dist/WSIViewer-2P7ANPBV.js +48562 -0
- package/dist/WsiSamplesPlot-FM4B657P.js +165 -0
- package/dist/adSandbox-M6TBRE5W.js +38 -0
- package/dist/animatedBubbleChart-VYSSX52K.js +555 -0
- package/dist/app-BLJT7ZDG.js +49 -0
- package/dist/app-LSFSUJHF.js +37 -0
- package/dist/app.js +13 -13
- package/dist/bam-ZMHBTBB4.js +860 -0
- package/dist/barchart-EF75MNTN.js +47 -0
- package/dist/barchart.data-VWZB3R2Z.js +22 -0
- package/dist/barchart.events-AMYQOMBQ.js +47 -0
- package/dist/barchart.integration.spec-TCTQ5PKN.js +2196 -0
- package/dist/barchart.integration.spec-TCTQ5PKN.js.map +7 -0
- package/dist/barchart2-LOHN6NSE.js +314 -0
- package/dist/block-23BH5TZ3.js +6226 -0
- package/dist/block.init-3BF6L23D.js +38 -0
- package/dist/block.mds.expressionrank-DSHATA2M.js +359 -0
- package/dist/block.mds.geneboxplot-RXQUOE3Y.js +828 -0
- package/dist/block.mds.junction-PN776TCD.js +1545 -0
- package/dist/block.mds.svcnv-SOWUBH4K.js +6801 -0
- package/dist/block.svg-ZPYMFAGC.js +164 -0
- package/dist/block.tk.aicheck-E22ZJJFP.js +283 -0
- package/dist/block.tk.ase-S54Z5A4G.js +365 -0
- package/dist/block.tk.bam-YOELFYXU.js +1906 -0
- package/dist/block.tk.bedgraphdot-VFUWXPSL.js +384 -0
- package/dist/block.tk.bigwig.ui-2SJYUPR3.js +212 -0
- package/dist/block.tk.hicstraw-GZVE4HQG.js +823 -0
- package/dist/block.tk.junction-RRFX4CAT.js +2364 -0
- package/dist/block.tk.junction-RRFX4CAT.js.map +7 -0
- package/dist/block.tk.junction.textmatrixui-A726SAAL.js +199 -0
- package/dist/block.tk.ld-THUOBW72.js +99 -0
- package/dist/block.tk.menu-V3VGODVI.js +1029 -0
- package/dist/block.tk.pgv-CNUGIK5J.js +944 -0
- package/dist/brainImaging-4PF74IEK.js +423 -0
- package/dist/brainRegions-U5K3KEQF.js +221 -0
- package/dist/bubbleHeatmap-6NL4PUFY.js +383 -0
- package/dist/bubbleHeatmap-6NL4PUFY.js.map +7 -0
- package/dist/chunk-2FTXOPE2.js +368 -0
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- package/dist/chunk-2SZ2VLOG.js +1102 -0
- package/dist/chunk-2XBWB6P2.js +37 -0
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- package/dist/chunk-3DS4HIEH.js +1230 -0
- package/dist/chunk-3DS4HIEH.js.map +7 -0
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- package/dist/chunk-S4L4JCMA.js +102 -0
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- package/dist/chunk-ZDEMAKRA.js +386 -0
- package/dist/chunk-ZTJLENGZ.js +292 -0
- package/dist/chunk-ZTJLENGZ.js.map +7 -0
- package/dist/condition-6UUQ3AAI.js +332 -0
- package/dist/controls-N2NIGPHY.js +41 -0
- package/dist/controls.config-YYIMJHWN.js +39 -0
- package/dist/correlation-DYUMFMTU.js +102 -0
- package/dist/cuminc-EUXCL53V.js +1149 -0
- package/dist/cuminc.integration.spec-ZQFMIBF6.js +678 -0
- package/dist/customdata.inputui-U2VXVWJ3.js +289 -0
- package/dist/dataDownload-QK2VYWYW.js +330 -0
- package/dist/dataDownload.integration.spec-NG4ZASWC.js +193 -0
- package/dist/databrowser.ui-ALW4LSLA.js +433 -0
- package/dist/dictionary-F7BPXOBO.js +118 -0
- package/dist/dnaMethylation-XNRJIBAH.js +38 -0
- package/dist/dnaMethylation.integration.spec-F5ODQTVL.js +203 -0
- package/dist/dofetch-IYEI7WSH.js +51 -0
- package/dist/e2pca-BHB7UMS5.js +350 -0
- package/dist/ep-QRFUVFSK.js +1256 -0
- package/dist/expclust.gdc.spec-LMH7QAU4.js +307 -0
- package/dist/facet-34HXG7MO.js +521 -0
- package/dist/forms2-ZQUPKXE5.js +539 -0
- package/dist/gb-HWZ5KZXX.js +88 -0
- package/dist/geneExpClustering-KFMP553E.js +249 -0
- package/dist/geneExpression-E2GIRM6Z.js +313 -0
- package/dist/geneExpression-QODFRNS4.js +38 -0
- package/dist/geneExpression.unit.spec-HV44ABGV.js +102 -0
- package/dist/geneORA-MJ6MFW2K.js +278 -0
- package/dist/geneRanking-ODKGLJX2.js +553 -0
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- package/dist/geneVariant-QT6E7YZN.js +39 -0
- package/dist/geneVariant-UYQ4XIOQ.js +41 -0
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- package/dist/genefusion.ui-5KYGD7JL.js +309 -0
- package/dist/geneset-M6T24ZYZ.js +208 -0
- package/dist/genomeBrowser.spec-CVH4S5KZ.js +281 -0
- package/dist/grin2-GI2WNWJO.js +968 -0
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- package/dist/grin2-QU2UCKKE.js +75 -0
- package/dist/gsea-EGWJAATJ.js +47 -0
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- package/dist/maf-MBX3S3LS.js +459 -0
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- /package/dist/{snplocus-CP34ABUJ.js.map → snplocus-CQZSC7P6.js.map} +0 -0
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- /package/dist/{spliceevent.noeventdiagram-352M63YB.js.map → spliceevent.noeventdiagram-DJDA6ENK.js.map} +0 -0
- /package/dist/{ssGSEA-BFTCECV3.js.map → ssGSEA-3FTGRUTC.js.map} +0 -0
- /package/dist/{ssGSEA.unit.spec-4OUCKRDQ.js.map → ssGSEA.unit.spec-GF35KBTX.js.map} +0 -0
- /package/dist/{summarizeCnvGeneexp-Y3AWFIZA.js.map → summarizeCnvGeneexp-6IDTNOYE.js.map} +0 -0
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- /package/dist/{summary.integration.spec-MZTJISLP.js.map → summary.integration.spec-IV6I6SNJ.js.map} +0 -0
- /package/dist/{summaryInput-5Z3XVIL6.js.map → summaryInput-NET6SPM4.js.map} +0 -0
- /package/dist/{sunburst-WVSQJYP2.js.map → sunburst-CO3MXFTJ.js.map} +0 -0
- /package/dist/{survival-3R3J2JBE.js.map → survival-MIPCEBS3.js.map} +0 -0
- /package/dist/{survival-XQWFVGCJ.js.map → survival-QQXTCNDU.js.map} +0 -0
- /package/dist/{svg2pdf.es.min-H4DXBG4O.js.map → svg2pdf.es.min-P2F6SSVJ.js.map} +0 -0
- /package/dist/{svgraph-SY2HVMYL.js.map → svgraph-YF7BS7TN.js.map} +0 -0
- /package/dist/{svmr-TIIMFKG7.js.map → svmr-J2JLQGEE.js.map} +0 -0
- /package/dist/{table-5RFTXIQL.js.map → table-7YL7I4GH.js.map} +0 -0
- /package/dist/{termCollection-23QXTZDN.js.map → termCollection-LNEN72IV.js.map} +0 -0
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- /package/dist/{termCollection.unit.spec-4AN2Z4PQ.js.map → termCollection.unit.spec-LTX7UVYP.js.map} +0 -0
- /package/dist/{tk-WW6PJGPQ.js.map → tk-RZDP2YT5.js.map} +0 -0
- /package/dist/{tp.ui-S5PO3MPH.js.map → tp.ui-T6XXBHHD.js.map} +0 -0
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- /package/dist/{tvs.dtcnv.categorical-2OUFOD3W.js.map → tvs.dtcnv.categorical-YIPXQSIL.js.map} +0 -0
- /package/dist/{tvs.dtcnv.continuous-NOOUY5SZ.js.map → tvs.dtcnv.continuous-ITNZE3SH.js.map} +0 -0
- /package/dist/{tvs.dtfusion-KXQMP3UF.js.map → tvs.dtfusion-2JIIPDTN.js.map} +0 -0
- /package/dist/{tvs.dtsnvindel-PWHFTWZU.js.map → tvs.dtsnvindel-HO2PUFN2.js.map} +0 -0
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- /package/dist/{tvs.samplelst-FLXNJFIV.js.map → tvs.samplelst-KKWJQNLW.js.map} +0 -0
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- /package/dist/{violin.integration.spec-6EQ6GC2N.js.map → violin.integration.spec-KESWDSBM.js.map} +0 -0
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- /package/dist/{violin.renderer-3WARZUOH.js.map → violin.renderer-WIRIV7QY.js.map} +0 -0
- /package/dist/{vocabulary-WLHYHDX7.js.map → vocabulary-XXDHHHPJ.js.map} +0 -0
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select_default
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// plots/table.js
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var TdbTable = class _TdbTable {
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static type = "table";
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constructor(opts) {
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this.type = _TdbTable.type;
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}
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async init() {
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const opts = this.opts;
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const controls = opts.controls ? null : opts.holder.append("div");
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const holder = opts.controls ? opts.holder : opts.holder.append("div");
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this.dom = {
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header: opts.header,
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controls,
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holder,
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div: holder.style("margin", "10px 0px").style("display", "none"),
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inputs: ["term1", "overlay"]
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};
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if (this.dom.header) this.dom.header.html("Crosstab");
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setInteractivity(this);
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setRenderers(this);
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await this.setControls();
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}
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async setControls() {
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if (this.opts.controls) {
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this.opts.controls.on("downloadClick.table", this.download);
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} else {
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this.dom.holder.attr("class", "pp-termdb-plot-viz").style("display", "inline-block").style("min-width", "300px").style("margin-left", "50px");
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this.components = {
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controls: await controlsInit({
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app: this.app,
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id: this.id,
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holder: this.dom.controls.style("display", "inline-block")
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})
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};
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this.components.controls.on("downloadClick.table", this.download);
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}
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}
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getState(appState, sub) {
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const config = appState.plots.find((p) => p.id === this.id);
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if (!config) {
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throw `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`;
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}
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return {
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activeCohort: appState.activeCohort,
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termfilter: appState.termfilter,
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config: {
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term: config.term,
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term2: config.term2,
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settings: {
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common: config.settings.common,
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table: config.settings.table
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}
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}
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};
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}
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async main() {
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try {
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this.config = structuredClone(this.state.config);
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if (!this.config.term2) {
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this.dom.div.style("display", "none");
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throw "term2 is required for table view";
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}
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const c = this.state.config;
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if (this.dom.header) this.dom.header.html(c.term.term.name + " vs " + c.term2.term.name);
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const reqOpts = this.getDataRequestOpts();
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this.data = await this.app.vocabApi.getNestedChartSeriesData(reqOpts);
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this.app.vocabApi.syncTermData(this.state.config, this.data);
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const [columns, rows] = this.processData(this.data);
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this.render(columns, rows);
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} catch (e) {
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throw e;
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}
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}
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// creates an opts object for the vocabApi.getNestedChartsData()
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getDataRequestOpts() {
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const c = this.config;
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const opts = { term: c.term, filter: this.state.termfilter.filter };
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if (c.term2) opts.term2 = c.term2;
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if (c.term0) opts.term0 = c.term0;
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if (this.state.ssid) opts.ssid = this.state.ssid;
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return opts;
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}
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processData(data) {
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const t2 = this.config.term2.term;
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const columns = data.refs.rows.map((key) => {
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const label = t2.values && key in t2.values ? t2.values[key].label : key;
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return { key, label };
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});
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const column_keys = data.refs.rows;
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const t1 = this.config.term.term;
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const rows = data.refs.cols.map((v1) => {
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const series = data.charts[0].serieses.find((d) => d.seriesId == v1);
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const label = t1.values && v1 in t1.values ? t1.values[v1].label : v1;
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return {
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label,
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lst: !series ? [] : series.data.slice().sort((a, b) => column_keys.indexOf(a.dataId) - column_keys.indexOf(b.dataId)).map((d) => {
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return {
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label: d.dataId,
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value: d.total
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};
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})
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};
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});
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return [columns, rows];
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}
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};
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function setInteractivity(self) {
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self.download = () => {
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if (!self.state || !self.state.isVisible) return;
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const data = [];
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self.dom.div.selectAll("tr").each(function() {
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const series = [];
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select_default(this).selectAll("th, td").each(function() {
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series.push(select_default(this).text());
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});
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data.push(series);
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});
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const matrix = data.map((row) => row.join(" ")).join("\n");
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const a = document.createElement("a");
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document.body.appendChild(a);
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a.addEventListener(
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"click",
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function() {
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a.download = self.config.term.term.name + " table.txt";
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a.href = URL.createObjectURL(new Blob([matrix], { type: "text/tab-separated-values" }));
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document.body.removeChild(a);
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},
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false
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);
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a.click();
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};
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}
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function setRenderers(self) {
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self.render = function render(columns, rows) {
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self.dom.div.style("display", "inline-block").selectAll("*").remove();
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const table = self.dom.div.append("table").style("margin-right", "20px").style("border-spacing", "3px").style("border-collapse", "collapse").style("border", "1px solid black");
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const tr = table.append("tr").style("white-space", "normal").style("background-color", "#ececec");
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tr.append("td");
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for (const value of columns) {
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const label = value.label;
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tr.append("th").text(label.length > 20 ? label.slice(0, 16) + "..." : label).attr("aria-label", label).style("border", "1px solid black").style("padding", "3px").style("text-align", "center").style("min-width", "80px").style("max-width", "150px").style("word-break", label.length > 12 ? "break-word" : "normal").style("vertical-align", "top");
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}
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let i = 0;
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for (const t1v of rows) {
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const tr2 = table.append("tr").style("background-color", i++ % 2 == 0 ? "#fff" : "#ececec");
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tr2.append("th").text(t1v.label.length > 20 ? t1v.label.slice(0, 20) + "..." : t1v.label).attr("aria-label", t1v.label).style("border", "1px solid black").style("padding", "3px").style("word-break", t1v.label.length > 12 ? "break-all" : "normal");
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const column_keys = columns.map((d) => d.key);
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for (const t2label of column_keys) {
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const td = tr2.append("td").style("border", "1px solid black").style("padding", "3px 5px").style("text-align", "center");
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const v = t1v.lst.find((i2) => i2.label == t2label);
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if (v) {
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td.html(v.value);
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}
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}
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}
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};
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}
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var tableInit = getCompInit(TdbTable);
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export {
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tableInit
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};
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//# sourceMappingURL=table-7YL7I4GH.js.map
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SearchHandler
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export {
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SearchHandler
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//# sourceMappingURL=termCollection-LNEN72IV.js.map
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import {
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mayHydrateDictTwLst,
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renderTable
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} from "./chunk-LYULXXGR.js";
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HandlerBase
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// termsetting/handlers/termCollection.ts
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var TermCollectionHandler = class extends HandlerBase {
|
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//main menu dom elements before drag and drop divs are added
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constructor(opts) {
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super(opts);
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this.dom = {};
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this.termsetting = opts.termsetting;
|
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this.tw = opts.termsetting.tw;
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this.dom.holder = opts.holder || this.termsetting.dom.tip.d;
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}
|
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async showEditMenu(div) {
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const self = this.termsetting;
|
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div.selectAll("*").remove();
|
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const termIds = self.vocabApi.termdbConfig.termCollections?.find((c) => c.name === self.term.name)?.termIds || [];
|
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const terms = [];
|
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|
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const toBeHydrated = [];
|
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for (const id of termIds) {
|
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const term = self.term.termlst.find((t) => t.id === id);
|
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|
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if (term) terms.push(term);
|
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|
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else toBeHydrated.push({ id });
|
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|
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}
|
|
59
|
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if (toBeHydrated.length) {
|
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60
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await mayHydrateDictTwLst(toBeHydrated, self.vocabApi);
|
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61
|
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terms.push(...toBeHydrated.map((tw) => tw.term));
|
|
62
|
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}
|
|
63
|
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const groupDiv = div.append("div");
|
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64
|
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const noButtonCallback = (i, node) => {
|
|
65
|
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terms[i].checked = node.checked;
|
|
66
|
+
};
|
|
67
|
+
const callback = this.tw.term.memberType == "numeric" ? addNumericTable(self, groupDiv, terms, noButtonCallback) : addCategoricalTable(self, groupDiv, terms, noButtonCallback);
|
|
68
|
+
div.append("div").append("div").style("float", "right").style("padding", "6px 20px").append("button").attr("class", "sjpp_apply_btn sja_filter_tag_btn").text("Apply").on("click", callback);
|
|
69
|
+
}
|
|
70
|
+
getPillStatus() {
|
|
71
|
+
return this.tw.getStatus(this.termsetting.usecase);
|
|
72
|
+
}
|
|
73
|
+
// inherited from HanlderBase
|
|
74
|
+
// getPillName(d: PillData) {}
|
|
75
|
+
};
|
|
76
|
+
function addNumericTable(self, div, terms, noButtonCallback) {
|
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|
+
const rows = [];
|
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78
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+
for (const term of terms) {
|
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79
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+
const checked = self.q.numerators?.find((tid) => tid === term.id) ? "checked" : "";
|
|
80
|
+
rows.push([{ value: term.name }, { html: `<input type='checkbox' ${checked} />` }]);
|
|
81
|
+
}
|
|
82
|
+
const selectedRows = terms.map((term, index) => self.term.termlst.find((t) => t.id === term.id) ? index : -1).filter((index) => index !== -1);
|
|
83
|
+
const columns = [{ label: "VARIABLES" }, { label: "Use for sorting" }];
|
|
84
|
+
renderTable({
|
|
85
|
+
rows,
|
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86
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+
columns,
|
|
87
|
+
div,
|
|
88
|
+
maxWidth: "30vw",
|
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89
|
+
maxHeight: "40vh",
|
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90
|
+
noButtonCallback,
|
|
91
|
+
striped: false,
|
|
92
|
+
showHeader: true,
|
|
93
|
+
//false,
|
|
94
|
+
selectedRows,
|
|
95
|
+
columnButtons: void 0,
|
|
96
|
+
//Leave until table.js is typed
|
|
97
|
+
buttons: void 0
|
|
98
|
+
});
|
|
99
|
+
return () => {
|
|
100
|
+
const q = self.q;
|
|
101
|
+
const trs = div.select("table").select("tbody").node().querySelectorAll("tr");
|
|
102
|
+
self.term.termlst = terms.filter((_, i) => trs[i].querySelectorAll("td")[1].querySelector("input")?.checked);
|
|
103
|
+
q.numerators = terms.filter((term, i) => {
|
|
104
|
+
const checked = trs[i].querySelectorAll("td")[1].querySelector("input")?.checked;
|
|
105
|
+
return checked === true;
|
|
106
|
+
}).map((t) => t.id);
|
|
107
|
+
self.api.runCallback();
|
|
108
|
+
};
|
|
109
|
+
}
|
|
110
|
+
function addCategoricalTable(self, div, terms, noButtonCallback) {
|
|
111
|
+
const rows = [];
|
|
112
|
+
for (const term of terms) {
|
|
113
|
+
rows.push([{ value: term.name }]);
|
|
114
|
+
}
|
|
115
|
+
const selectedRows = terms.map((term, index) => self.term.termlst.find((t) => t.id === term.id) ? index : -1).filter((index) => index !== -1);
|
|
116
|
+
const columns = [{ label: "VARIABLES" }];
|
|
117
|
+
renderTable({
|
|
118
|
+
rows,
|
|
119
|
+
columns,
|
|
120
|
+
div: div.append("div").style("margin-top", "10px"),
|
|
121
|
+
maxWidth: "30vw",
|
|
122
|
+
maxHeight: "40vh",
|
|
123
|
+
noButtonCallback,
|
|
124
|
+
striped: false,
|
|
125
|
+
showHeader: true,
|
|
126
|
+
//false,
|
|
127
|
+
selectedRows,
|
|
128
|
+
columnButtons: void 0,
|
|
129
|
+
//Leave until table.js is typed
|
|
130
|
+
buttons: void 0
|
|
131
|
+
});
|
|
132
|
+
const categoryDiv = div.append("div").style("margin-top", "15px");
|
|
133
|
+
const values = Object.assign({}, ...self.tw.term.termlst?.map((t) => t.values || {}) ?? []);
|
|
134
|
+
const categoryTable = categoryDiv.append("div");
|
|
135
|
+
const ckSource = self.tw.q.categoryKeys || self.tw.term.categoryKeys || [];
|
|
136
|
+
renderTable({
|
|
137
|
+
columns: [{ label: "CATEGORIES" }],
|
|
138
|
+
rows: ckSource.map((ck) => {
|
|
139
|
+
return [{ value: values[ck.key]?.label ?? ck.key, checked: ck.shown }];
|
|
140
|
+
}),
|
|
141
|
+
div: categoryTable,
|
|
142
|
+
maxWidth: "30vw",
|
|
143
|
+
maxHeight: "40vh",
|
|
144
|
+
noButtonCallback: () => {
|
|
145
|
+
},
|
|
146
|
+
// FIXME to supply a real callback
|
|
147
|
+
striped: false,
|
|
148
|
+
showHeader: true,
|
|
149
|
+
//false,
|
|
150
|
+
selectAll: true,
|
|
151
|
+
columnButtons: void 0,
|
|
152
|
+
//Leave until table.js is typed
|
|
153
|
+
buttons: void 0
|
|
154
|
+
});
|
|
155
|
+
return () => {
|
|
156
|
+
const trs = div.select("table").select("tbody").node().querySelectorAll("tr");
|
|
157
|
+
self.term.termlst = terms.filter((term, i) => {
|
|
158
|
+
const checked = trs[i].querySelectorAll("td")[1].querySelector("input")?.checked;
|
|
159
|
+
return checked === true;
|
|
160
|
+
});
|
|
161
|
+
const catTrs = categoryTable.select("table").select("tbody").node().querySelectorAll("tr");
|
|
162
|
+
self.q.categoryKeys = ckSource.map((ck, i) => {
|
|
163
|
+
const checked = catTrs[i].querySelectorAll("td")[1].querySelector("input")?.checked;
|
|
164
|
+
return { key: ck.key, shown: !!checked };
|
|
165
|
+
});
|
|
166
|
+
self.api.runCallback();
|
|
167
|
+
};
|
|
168
|
+
}
|
|
169
|
+
function fillTW(tw) {
|
|
170
|
+
if (!tw.type) tw.type = "termCollection";
|
|
171
|
+
if (!tw.q) tw.q = { mode: "continuous", type: "compositePercentage" };
|
|
172
|
+
else tw.q.mode = "continuous";
|
|
173
|
+
return tw;
|
|
174
|
+
}
|
|
175
|
+
export {
|
|
176
|
+
TermCollectionHandler,
|
|
177
|
+
fillTW
|
|
178
|
+
};
|
|
179
|
+
//# sourceMappingURL=termCollection-SOLNYAZ4.js.map
|
|
@@ -0,0 +1,208 @@
|
|
|
1
|
+
import {
|
|
2
|
+
SearchHandler
|
|
3
|
+
} from "./chunk-MU3ZC4RW.js";
|
|
4
|
+
import {
|
|
5
|
+
require_tape
|
|
6
|
+
} from "./chunk-TUMA63WX.js";
|
|
7
|
+
import "./chunk-LYULXXGR.js";
|
|
8
|
+
import "./chunk-HJ6L54YS.js";
|
|
9
|
+
import "./chunk-LSEFWW72.js";
|
|
10
|
+
import "./chunk-CPMOBFFR.js";
|
|
11
|
+
import "./chunk-HYOEWQ5P.js";
|
|
12
|
+
import "./chunk-HBW42TDT.js";
|
|
13
|
+
import "./chunk-LQJMCE7G.js";
|
|
14
|
+
import "./chunk-FN5XPUPH.js";
|
|
15
|
+
import "./chunk-IIT367QZ.js";
|
|
16
|
+
import "./chunk-RZGEKL77.js";
|
|
17
|
+
import "./chunk-B4VBTVVQ.js";
|
|
18
|
+
import "./chunk-IQTEW3SK.js";
|
|
19
|
+
import "./chunk-MNPTPENH.js";
|
|
20
|
+
import "./chunk-7IYJZZQI.js";
|
|
21
|
+
import "./chunk-M3J4MINX.js";
|
|
22
|
+
import "./chunk-PF4DSFDR.js";
|
|
23
|
+
import "./chunk-I73KUUYG.js";
|
|
24
|
+
import "./chunk-UAALI7MC.js";
|
|
25
|
+
import "./chunk-7KRS7L4U.js";
|
|
26
|
+
import "./chunk-BKPDYW5T.js";
|
|
27
|
+
import "./chunk-JNITUVXP.js";
|
|
28
|
+
import "./chunk-TJYRBEBK.js";
|
|
29
|
+
import "./chunk-LOZEKOES.js";
|
|
30
|
+
import "./chunk-VQZ2Z5YU.js";
|
|
31
|
+
import "./chunk-SOTB4FRE.js";
|
|
32
|
+
import "./chunk-TLT4YIG3.js";
|
|
33
|
+
import "./chunk-KYBIQBXE.js";
|
|
34
|
+
import {
|
|
35
|
+
select_default
|
|
36
|
+
} from "./chunk-I6Y4O3RR.js";
|
|
37
|
+
import "./chunk-OMR2DT66.js";
|
|
38
|
+
import "./chunk-DQC5FFGV.js";
|
|
39
|
+
import {
|
|
40
|
+
__toESM
|
|
41
|
+
} from "./chunk-HFNDKYVF.js";
|
|
42
|
+
|
|
43
|
+
// termdb/handlers/test/termCollection.unit.spec.ts
|
|
44
|
+
var import_tape = __toESM(require_tape(), 1);
|
|
45
|
+
function getHolder() {
|
|
46
|
+
return select_default("body").append("div");
|
|
47
|
+
}
|
|
48
|
+
function getTermCollectionDetails(overrides = {}) {
|
|
49
|
+
return {
|
|
50
|
+
name: "Test Collection",
|
|
51
|
+
type: "gene",
|
|
52
|
+
memberType: "gene",
|
|
53
|
+
termlst: [
|
|
54
|
+
{ id: "gene1", name: "TP53", values: { tissue: "Lung" } },
|
|
55
|
+
{ id: "gene2", name: "KRAS", values: { tissue: "Colon" } },
|
|
56
|
+
{ id: "gene3", name: "BRCA1", values: { tissue: "Breast" } }
|
|
57
|
+
],
|
|
58
|
+
categoryKeys: [
|
|
59
|
+
{ key: "tissue", shown: true },
|
|
60
|
+
{ key: "expression", shown: false }
|
|
61
|
+
],
|
|
62
|
+
propsByTermId: {
|
|
63
|
+
gene1: { color: "#FF0000" },
|
|
64
|
+
gene2: { color: "#00FF00" }
|
|
65
|
+
},
|
|
66
|
+
...overrides
|
|
67
|
+
};
|
|
68
|
+
}
|
|
69
|
+
(0, import_tape.default)("\n", function(test) {
|
|
70
|
+
test.comment("-***- termdb/handlers/termCollection -***-");
|
|
71
|
+
test.end();
|
|
72
|
+
});
|
|
73
|
+
(0, import_tape.default)("init() should render term list table with all terms from details.termlst", async (test) => {
|
|
74
|
+
const handler = new SearchHandler();
|
|
75
|
+
const holder = getHolder();
|
|
76
|
+
const details = getTermCollectionDetails();
|
|
77
|
+
await handler.init({
|
|
78
|
+
holder,
|
|
79
|
+
callback: () => {
|
|
80
|
+
},
|
|
81
|
+
app: {},
|
|
82
|
+
details
|
|
83
|
+
});
|
|
84
|
+
const table = holder.select("table");
|
|
85
|
+
test.ok(table.node(), "Should render a table");
|
|
86
|
+
const rows = table.selectAll("tbody tr");
|
|
87
|
+
test.equal(rows.size(), 3, "Should render three rows for three terms");
|
|
88
|
+
const rowTexts = rows.nodes().map((row) => row.textContent.trim());
|
|
89
|
+
test.ok(rowTexts[0].includes("TP53"), "First row should contain TP53");
|
|
90
|
+
test.ok(rowTexts[1].includes("KRAS"), "Second row should contain KRAS");
|
|
91
|
+
test.ok(rowTexts[2].includes("BRCA1"), "Third row should contain BRCA1");
|
|
92
|
+
if (test["_ok"]) holder.remove();
|
|
93
|
+
test.end();
|
|
94
|
+
});
|
|
95
|
+
(0, import_tape.default)("init() should render category table when details.categoryKeys is present", async (test) => {
|
|
96
|
+
const handler = new SearchHandler();
|
|
97
|
+
const holder = getHolder();
|
|
98
|
+
const details = getTermCollectionDetails();
|
|
99
|
+
await handler.init({
|
|
100
|
+
holder,
|
|
101
|
+
callback: () => {
|
|
102
|
+
},
|
|
103
|
+
app: {},
|
|
104
|
+
details
|
|
105
|
+
});
|
|
106
|
+
const tables = holder.selectAll("table");
|
|
107
|
+
test.equal(tables.size(), 2, "Should render two tables when categoryKeys is present");
|
|
108
|
+
const categoryTable = tables.nodes()[1];
|
|
109
|
+
const categoryRows = select_default(categoryTable).selectAll("tbody tr");
|
|
110
|
+
test.equal(categoryRows.size(), 2, "Should render two rows for two categories");
|
|
111
|
+
const categoryTexts = categoryRows.nodes().map((row) => row.textContent.trim());
|
|
112
|
+
test.ok(categoryTexts[0].includes("tissue"), "Should display tissue category key");
|
|
113
|
+
test.ok(categoryTexts[1].includes("expression"), "Should display expression category key");
|
|
114
|
+
if (test["_ok"]) holder.remove();
|
|
115
|
+
test.end();
|
|
116
|
+
});
|
|
117
|
+
(0, import_tape.default)("init() should call callback with selected terms, categoryKeys, and properties", async (test) => {
|
|
118
|
+
const handler = new SearchHandler();
|
|
119
|
+
const holder = getHolder();
|
|
120
|
+
const details = getTermCollectionDetails();
|
|
121
|
+
let callbackResult;
|
|
122
|
+
await handler.init({
|
|
123
|
+
holder,
|
|
124
|
+
callback: (result) => {
|
|
125
|
+
callbackResult = result;
|
|
126
|
+
},
|
|
127
|
+
app: {},
|
|
128
|
+
details
|
|
129
|
+
});
|
|
130
|
+
const termsTable = holder.selectAll("table").nodes()[0];
|
|
131
|
+
const checkboxes = termsTable.querySelectorAll('tbody input[type="checkbox"]');
|
|
132
|
+
checkboxes[0].checked = true;
|
|
133
|
+
checkboxes[1].checked = true;
|
|
134
|
+
checkboxes[2].checked = false;
|
|
135
|
+
const categoryTable = holder.selectAll("table").nodes()[1];
|
|
136
|
+
const categoryCheckboxes = categoryTable.querySelectorAll('tbody input[type="checkbox"]');
|
|
137
|
+
categoryCheckboxes[0].checked = true;
|
|
138
|
+
categoryCheckboxes[1].checked = false;
|
|
139
|
+
const selectBtn = holder.select("button.sjpp_apply_btn").node();
|
|
140
|
+
selectBtn.click();
|
|
141
|
+
test.equal(callbackResult?.type, "termCollection", "Should set type to termCollection");
|
|
142
|
+
test.equal(callbackResult?.name, "Test Collection", "Should pass collection name");
|
|
143
|
+
test.equal(callbackResult?.memberType, "gene", "Should pass memberType");
|
|
144
|
+
test.deepEqual(callbackResult?.termIds, ["gene1", "gene2"], "Should pass selected term IDs");
|
|
145
|
+
test.equal(callbackResult?.termlst.length, 2, "Should pass selected term list with correct length");
|
|
146
|
+
test.equal(callbackResult?.termlst[0].name, "TP53", "First selected term should be TP53");
|
|
147
|
+
test.equal(callbackResult?.termlst[1].name, "KRAS", "Second selected term should be KRAS");
|
|
148
|
+
test.deepEqual(
|
|
149
|
+
callbackResult?.categoryKeys,
|
|
150
|
+
[
|
|
151
|
+
{ key: "tissue", shown: true },
|
|
152
|
+
{ key: "expression", shown: false }
|
|
153
|
+
],
|
|
154
|
+
"Should pass updated categoryKeys with shown status"
|
|
155
|
+
);
|
|
156
|
+
test.deepEqual(
|
|
157
|
+
callbackResult?.propsByTermId,
|
|
158
|
+
{ gene1: { color: "#FF0000" }, gene2: { color: "#00FF00" } },
|
|
159
|
+
"Should pass propsByTermId for selected terms only"
|
|
160
|
+
);
|
|
161
|
+
if (test["_ok"]) holder.remove();
|
|
162
|
+
test.end();
|
|
163
|
+
});
|
|
164
|
+
(0, import_tape.default)("init() should not render category table when details.categoryKeys is missing", async (test) => {
|
|
165
|
+
const handler = new SearchHandler();
|
|
166
|
+
const holder = getHolder();
|
|
167
|
+
const details = getTermCollectionDetails({ categoryKeys: void 0 });
|
|
168
|
+
await handler.init({
|
|
169
|
+
holder,
|
|
170
|
+
callback: () => {
|
|
171
|
+
},
|
|
172
|
+
app: {},
|
|
173
|
+
details
|
|
174
|
+
});
|
|
175
|
+
const tables = holder.selectAll("table");
|
|
176
|
+
test.equal(tables.size(), 1, "Should render only one table when categoryKeys is missing");
|
|
177
|
+
if (test["_ok"]) holder.remove();
|
|
178
|
+
test.end();
|
|
179
|
+
});
|
|
180
|
+
(0, import_tape.default)("init() should show alert when no terms are selected", async (test) => {
|
|
181
|
+
const handler = new SearchHandler();
|
|
182
|
+
const holder = getHolder();
|
|
183
|
+
const details = getTermCollectionDetails();
|
|
184
|
+
let alertCalled = false;
|
|
185
|
+
const originalAlert = window.alert;
|
|
186
|
+
window.alert = () => {
|
|
187
|
+
alertCalled = true;
|
|
188
|
+
};
|
|
189
|
+
await handler.init({
|
|
190
|
+
holder,
|
|
191
|
+
callback: () => test.fail("Callback should not be called when no terms selected"),
|
|
192
|
+
app: {},
|
|
193
|
+
details
|
|
194
|
+
});
|
|
195
|
+
const termsTable = holder.selectAll("table").nodes()[0];
|
|
196
|
+
const checkboxes = termsTable.querySelectorAll('tbody input[type="checkbox"]');
|
|
197
|
+
for (const cb of checkboxes) {
|
|
198
|
+
;
|
|
199
|
+
cb.checked = false;
|
|
200
|
+
}
|
|
201
|
+
const selectBtn = holder.select("button.sjpp_apply_btn").node();
|
|
202
|
+
selectBtn.click();
|
|
203
|
+
test.ok(alertCalled, "Should show alert when no terms are selected");
|
|
204
|
+
window.alert = originalAlert;
|
|
205
|
+
if (test["_ok"]) holder.remove();
|
|
206
|
+
test.end();
|
|
207
|
+
});
|
|
208
|
+
//# sourceMappingURL=termCollection.unit.spec-LTX7UVYP.js.map
|
|
@@ -0,0 +1,46 @@
|
|
|
1
|
+
import {
|
|
2
|
+
loadTk,
|
|
3
|
+
rangequery_rglst
|
|
4
|
+
} from "./chunk-M7JGRSFA.js";
|
|
5
|
+
import "./chunk-SKMFMGCD.js";
|
|
6
|
+
import "./chunk-Z7UVDJKK.js";
|
|
7
|
+
import "./chunk-44VQIATQ.js";
|
|
8
|
+
import "./chunk-V2OJLJSK.js";
|
|
9
|
+
import "./chunk-WKNI3HRQ.js";
|
|
10
|
+
import "./chunk-5DSLFEAN.js";
|
|
11
|
+
import "./chunk-LYULXXGR.js";
|
|
12
|
+
import "./chunk-HJ6L54YS.js";
|
|
13
|
+
import "./chunk-LSEFWW72.js";
|
|
14
|
+
import "./chunk-CPMOBFFR.js";
|
|
15
|
+
import "./chunk-HYOEWQ5P.js";
|
|
16
|
+
import "./chunk-HBW42TDT.js";
|
|
17
|
+
import "./chunk-LQJMCE7G.js";
|
|
18
|
+
import "./chunk-FN5XPUPH.js";
|
|
19
|
+
import "./chunk-IIT367QZ.js";
|
|
20
|
+
import "./chunk-RZGEKL77.js";
|
|
21
|
+
import "./chunk-B4VBTVVQ.js";
|
|
22
|
+
import "./chunk-IQTEW3SK.js";
|
|
23
|
+
import "./chunk-MNPTPENH.js";
|
|
24
|
+
import "./chunk-7IYJZZQI.js";
|
|
25
|
+
import "./chunk-M3J4MINX.js";
|
|
26
|
+
import "./chunk-PF4DSFDR.js";
|
|
27
|
+
import "./chunk-I73KUUYG.js";
|
|
28
|
+
import "./chunk-UAALI7MC.js";
|
|
29
|
+
import "./chunk-7KRS7L4U.js";
|
|
30
|
+
import "./chunk-BKPDYW5T.js";
|
|
31
|
+
import "./chunk-JNITUVXP.js";
|
|
32
|
+
import "./chunk-TJYRBEBK.js";
|
|
33
|
+
import "./chunk-LOZEKOES.js";
|
|
34
|
+
import "./chunk-VQZ2Z5YU.js";
|
|
35
|
+
import "./chunk-SOTB4FRE.js";
|
|
36
|
+
import "./chunk-TLT4YIG3.js";
|
|
37
|
+
import "./chunk-KYBIQBXE.js";
|
|
38
|
+
import "./chunk-I6Y4O3RR.js";
|
|
39
|
+
import "./chunk-OMR2DT66.js";
|
|
40
|
+
import "./chunk-DQC5FFGV.js";
|
|
41
|
+
import "./chunk-HFNDKYVF.js";
|
|
42
|
+
export {
|
|
43
|
+
loadTk,
|
|
44
|
+
rangequery_rglst
|
|
45
|
+
};
|
|
46
|
+
//# sourceMappingURL=tk-RZDP2YT5.js.map
|