@sjcrh/proteinpaint-client 2.191.4 → 2.192.0

package/dist/chunk-M7UKOCJA.js

@@ -0,0 +1,234 @@
+import {
+  DownloadMenu,
+  ListSamples,
+  filterJoin,
+  getFilterItemByTag,
+  renderTable
+} from "./chunk-KUZPTJJO.js";
+import {
+  SINGLECELL_GENE_EXPRESSION
+} from "./chunk-2U2CP2Y2.js";
+import {
+  niceNumLabels
+} from "./chunk-BKPDYW5T.js";
+
+// plots/violin.interactivity.js
+function setInteractivity(self) {
+  self.getChartImages = function() {
+    const charts = [];
+    for (const [key, chart] of Object.entries(self.data.charts)) {
+      const title = self.getChartTitle(chart.chartId);
+      const name = `${self.config.term.term.name}  ${title}`;
+      const chartDiv = chart.chartDiv;
+      charts.push({ name, svg: chartDiv.select("svg") });
+    }
+    return charts;
+  };
+  self.download = function(event) {
+    if (!self.state) return;
+    const name2svg = self.getChartImages();
+    const dm = new DownloadMenu(name2svg, self.config.term.term.name);
+    dm.show(event.clientX, event.clientY, event.target);
+  };
+  self.displayLabelClickMenu = function(t1, t2, plot, event) {
+    if (!t2) return;
+    if (self.config.term.term.type == SINGLECELL_GENE_EXPRESSION) return;
+    const label = t1.q.mode === "continuous" ? "term2" : "term";
+    const options = [];
+    if (this.app.getState().nav.header_mode !== "only_buttons")
+      options.push({
+        label: `Add filter: ${plot.label.split(",")[0]}`,
+        testid: "sjpp-violinLabOpt-addf",
+        callback: getAddFilterCallback(self, plot)
+      });
+    options.push({
+      label: `Hide: ${plot.label}`,
+      testid: "sjpp-violinLabOpt-hide",
+      callback: () => {
+        const term = self.config[label];
+        const isHidden = true;
+        self.app.dispatch({
+          type: "plot_edit",
+          id: self.id,
+          config: {
+            [label]: {
+              isAtomic: true,
+              term: term.term,
+              q: getUpdatedQfromClick(plot, term, isHidden)
+            }
+          }
+        });
+      }
+    });
+    if (self.state.displaySampleIds && self.state.hasVerifiedToken) {
+      options.push({
+        label: `List samples`,
+        testid: "sjpp-violinLabOpt-list",
+        callback: async () => {
+          const [start, end] = [self.data.min, self.data.max];
+          await self.callListSamples(event, plot, start, end);
+        }
+      });
+      if (self.opts.allow2selectSamples) {
+        const ss = self.opts.allow2selectSamples;
+        options.push({
+          label: ss.buttonText,
+          callback: async () => {
+            const [start, end] = [self.data.min, self.data.max];
+            await self.selectSamples(plot, start, end, ss);
+          }
+        });
+      }
+    }
+    self.displayMenu(event, options);
+  };
+  self.displayBrushMenu = function(t1, t2, self2, plot, event, scale, isH) {
+    const selection = event.selection;
+    const [start, end] = isH ? [scale.invert(selection[0]), scale.invert(selection[1])] : [scale.invert(selection[1]), scale.invert(selection[0])];
+    const options = [];
+    if (this.app.getState().nav.header_mode === "with_tabs")
+      options.push({
+        label: `Add filter`,
+        testid: "sjpp-violinBrushOpt-addf",
+        callback: getAddFilterCallback(self2, plot, start, end)
+      });
+    if (self2.state.displaySampleIds && self2.state.hasVerifiedToken) {
+      options.push({
+        label: `List samples`,
+        testid: "sjpp-violinBrushOpt-list",
+        callback: async () => self2.callListSamples(event.sourceEvent, plot, start, end)
+      });
+      if (self2.opts.allow2selectSamples) {
+        const ss = self2.opts.allow2selectSamples;
+        options.push({
+          label: ss.buttonText,
+          callback: async () => {
+            await self2.selectSamples(plot, start, end, ss);
+          }
+        });
+      }
+    }
+    self2.displayMenu(event.sourceEvent, options, start, end);
+  };
+  self.displayMenu = function(event, options, start, end) {
+    const tip = self.dom.clicktip.clear().show(event.clientX, event.clientY);
+    const isBrush = start != null && end != null;
+    if (isBrush) {
+      const [niceStart, niceEnd] = self.config.term.term.type == "integer" ? [Math.round(start), Math.round(end)] : niceNumLabels([start, end]);
+      tip.d.append("div").style("margin", "10px").text(`From ${niceStart} to ${niceEnd}`);
+    }
+    tip.d.append("div").selectAll("div").data(options).enter().append("div").attr("class", "sja_menuoption sja_sharp_border").attr("data-testid", (d) => d.testid).text((d) => d.label).on("click", async (event2, d) => {
+      if (event2.target._clicked) return;
+      event2.target._clicked = true;
+      event2.target.textContent = "Loading...";
+      await d.callback();
+      tip.hide();
+    });
+  };
+  self.selectSamples = async function(plot, start, end, ss) {
+    const ls = self.getSampleList(plot, start, end);
+    const data = await ls.getData();
+    const table = ls.setTableData(data);
+    const samples = table[2];
+    ss.callback({
+      samples: await self.app.vocabApi.convertSampleId(samples, ss.attributes),
+      source: ss.defaultSelectionLabel || `Selected from violin`
+    });
+  };
+  self.getSampleList = function(plot, start, end) {
+    const { term, term2, term0 } = self.config;
+    const bins = self.data.bins;
+    const rangeStart = start !== void 0 ? start : null;
+    const rangeStop = end !== void 0 ? end : null;
+    const ls = new ListSamples({
+      app: self.app,
+      termfilter: self.state.termfilter,
+      term,
+      term2,
+      term0,
+      plot,
+      bins,
+      start: rangeStart,
+      end: rangeStop
+    });
+    return ls;
+  };
+  self.callListSamples = async function(event, plot, start, end) {
+    const ls = self.getSampleList(plot, start, end);
+    const data = await ls.getData();
+    const [rows, columns] = ls.setTableData(data);
+    const tip = self.dom.sampletabletip;
+    tip.clear().show(event.clientX, event.clientY, false);
+    renderTable({
+      rows,
+      columns,
+      div: tip.d,
+      showLines: true,
+      maxHeight: "40vh",
+      resize: true,
+      dataTestId: "sjpp-listsampletable"
+    });
+  };
+  self.labelHideLegendClicking = function(t2, plot) {
+    self.dom.legendDiv.selectAll(".sjpp-htmlLegend").on("click", (event) => {
+      event.stopPropagation();
+      const d = event.target.__data__;
+      const termNum = t2?.term.type === "condition" || t2?.term.type === "samplelst" || t2?.term.type === "categorical" || (t2?.term.type === "float" || t2?.term.type === "integer") && self.config.term?.q.mode === "continuous" ? "term2" : "term";
+      const term = self.config[termNum];
+      if (t2) {
+        for (const key of Object.keys(term?.q?.hiddenValues)) {
+          if (d.text === key) {
+            delete term.q.hiddenValues[key];
+          }
+        }
+        const isHidden = false;
+        self.app.dispatch({
+          type: "plot_edit",
+          id: self.id,
+          config: {
+            [termNum]: {
+              isAtomic: true,
+              term: term.term,
+              q: getUpdatedQfromClick(plot, term, isHidden)
+            }
+          }
+        });
+      }
+    }).on("mouseover", (event) => {
+      const q = event.target.__data__;
+      if (q === void 0) return;
+      if (q.isHidden === true && q.isClickable === true) {
+        self.dom.hovertip.clear().show(event.clientX, event.clientY).d.append("span").text("Click to unhide plot");
+      }
+    }).on("mouseout", function() {
+      self.dom.hovertip.hide();
+    });
+  };
+}
+function getAddFilterCallback(self, plot, rangeStart, rangeStop) {
+  const ls = self.getSampleList(plot, rangeStart, rangeStop);
+  return () => {
+    const filterUiRoot = getFilterItemByTag(self.state.termfilter.filter, "filterUiRoot");
+    const filter = filterJoin([filterUiRoot, ls.tvslst]);
+    filter.tag = "filterUiRoot";
+    self.app.dispatch({
+      type: "filter_replace",
+      filter
+    });
+  };
+}
+function getUpdatedQfromClick(plot, term, isHidden = false) {
+  const label = plot.label;
+  const valueId = term?.term?.values ? term?.term?.values?.[label]?.label : label;
+  const id = !valueId ? label : valueId;
+  const q = term.q;
+  if (!q.hiddenValues) q.hiddenValues = {};
+  if (isHidden) q.hiddenValues[id] = 1;
+  else delete q.hiddenValues[id];
+  return q;
+}
+
+export {
+  setInteractivity
+};
+//# sourceMappingURL=chunk-M7UKOCJA.js.map

package/dist/chunk-M7UKOCJA.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/violin.interactivity.js"],
+  "sourcesContent": ["import { filterJoin, getFilterItemByTag } from '#filter'\nimport { DownloadMenu, niceNumLabels, ListSamples, renderTable } from '#dom'\nimport { SINGLECELL_GENE_EXPRESSION } from '#shared/terms.js'\n\nexport function setInteractivity(self) {\n\tself.getChartImages = function () {\n\t\tconst charts = []\n\n\t\tfor (const [key, chart] of Object.entries(self.data.charts)) {\n\t\t\tconst title = self.getChartTitle(chart.chartId)\n\t\t\tconst name = `${self.config.term.term.name}  ${title}`\n\t\t\tconst chartDiv = chart.chartDiv\n\t\t\tcharts.push({ name, svg: chartDiv.select('svg') })\n\t\t}\n\t\treturn charts\n\t}\n\n\tself.download = function (event) {\n\t\tif (!self.state) return\n\t\tconst name2svg = self.getChartImages()\n\t\tconst dm = new DownloadMenu(name2svg, self.config.term.term.name)\n\t\tdm.show(event.clientX, event.clientY, event.target)\n\t}\n\n\tself.displayLabelClickMenu = function (t1, t2, plot, event) {\n\t\tif (!t2) return // when no term 2 do not show options on the sole violin label\n\t\tif (self.config.term.term.type == SINGLECELL_GENE_EXPRESSION) return // is sc gene exp data, none of the options below work, thus disable\n\n\t\tconst label = t1.q.mode === 'continuous' ? 'term2' : 'term'\n\t\tconst options = []\n\t\tif (this.app.getState().nav.header_mode !== 'only_buttons')\n\t\t\toptions.push({\n\t\t\t\tlabel: `Add filter: ${plot.label.split(',')[0]}`,\n\t\t\t\ttestid: 'sjpp-violinLabOpt-addf',\n\t\t\t\tcallback: getAddFilterCallback(self, plot)\n\t\t\t})\n\n\t\toptions.push({\n\t\t\tlabel: `Hide: ${plot.label}`,\n\t\t\ttestid: 'sjpp-violinLabOpt-hide',\n\t\t\tcallback: () => {\n\t\t\t\tconst term = self.config[label]\n\n\t\t\t\tconst isHidden = true\n\n\t\t\t\tself.app.dispatch({\n\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\tid: self.id,\n\t\t\t\t\tconfig: {\n\t\t\t\t\t\t[label]: {\n\t\t\t\t\t\t\tisAtomic: true,\n\t\t\t\t\t\t\tterm: term.term,\n\t\t\t\t\t\t\tq: getUpdatedQfromClick(plot, term, isHidden)\n\t\t\t\t\t\t}\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t}\n\t\t})\n\t\tif (self.state.displaySampleIds && self.state.hasVerifiedToken) {\n\t\t\toptions.push({\n\t\t\t\tlabel: `List samples`,\n\t\t\t\ttestid: 'sjpp-violinLabOpt-list',\n\t\t\t\tcallback: async () => {\n\t\t\t\t\t/** self.data.max * 2 appears to be a workaround for a\n\t\t\t\t\t * previous bug in the list samples logic. Since that logic\n\t\t\t\t\t * has been refined, this appears to be no longer necessary.\n\t\t\t\t\t * Commenting out for now, but leaving in place in case.*/\n\t\t\t\t\t// const [start, end] = [self.data.min, self.data.max * 2]\n\t\t\t\t\tconst [start, end] = [self.data.min, self.data.max]\n\t\t\t\t\tawait self.callListSamples(event, plot, start, end)\n\t\t\t\t}\n\t\t\t})\n\n\t\t\tif (self.opts.allow2selectSamples) {\n\t\t\t\tconst ss = self.opts.allow2selectSamples\n\t\t\t\toptions.push({\n\t\t\t\t\tlabel: ss.buttonText,\n\t\t\t\t\tcallback: async () => {\n\t\t\t\t\t\tconst [start, end] = [self.data.min, self.data.max]\n\t\t\t\t\t\tawait self.selectSamples(plot, start, end, ss)\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t}\n\t\t}\n\t\tself.displayMenu(event, options)\n\t}\n\n\tself.displayBrushMenu = function (t1, t2, self, plot, event, scale, isH) {\n\t\tconst selection = event.selection\n\t\tconst [start, end] = isH\n\t\t\t? [scale.invert(selection[0]), scale.invert(selection[1])]\n\t\t\t: [scale.invert(selection[1]), scale.invert(selection[0])]\n\n\t\tconst options = []\n\n\t\tif (this.app.getState().nav.header_mode === 'with_tabs')\n\t\t\toptions.push({\n\t\t\t\tlabel: `Add filter`,\n\t\t\t\ttestid: 'sjpp-violinBrushOpt-addf',\n\t\t\t\tcallback: getAddFilterCallback(self, plot, start, end)\n\t\t\t})\n\n\t\tif (self.state.displaySampleIds && self.state.hasVerifiedToken) {\n\t\t\toptions.push({\n\t\t\t\tlabel: `List samples`,\n\t\t\t\ttestid: 'sjpp-violinBrushOpt-list',\n\t\t\t\tcallback: async () => self.callListSamples(event.sourceEvent, plot, start, end)\n\t\t\t})\n\n\t\t\tif (self.opts.allow2selectSamples) {\n\t\t\t\tconst ss = self.opts.allow2selectSamples\n\t\t\t\toptions.push({\n\t\t\t\t\tlabel: ss.buttonText,\n\t\t\t\t\tcallback: async () => {\n\t\t\t\t\t\tawait self.selectSamples(plot, start, end, ss)\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t}\n\t\t}\n\n\t\tself.displayMenu(event.sourceEvent, options, start, end)\n\t}\n\n\tself.displayMenu = function (event, options, start, end) {\n\t\tconst tip = self.dom.clicktip.clear().show(event.clientX, event.clientY)\n\n\t\tconst isBrush = start != null && end != null\n\n\t\tif (isBrush) {\n\t\t\tconst [niceStart, niceEnd] =\n\t\t\t\tself.config.term.term.type == 'integer' ? [Math.round(start), Math.round(end)] : niceNumLabels([start, end])\n\n\t\t\ttip.d.append('div').style('margin', '10px').text(`From ${niceStart} to ${niceEnd}`)\n\t\t}\n\t\t//show menu options for label clicking and brush selection\n\t\ttip.d\n\t\t\t.append('div')\n\t\t\t.selectAll('div')\n\t\t\t.data(options)\n\t\t\t.enter()\n\t\t\t.append('div')\n\t\t\t.attr('class', 'sja_menuoption sja_sharp_border')\n\t\t\t.attr('data-testid', d => d.testid)\n\t\t\t.text(d => d.label)\n\t\t\t.on('click', async (event, d) => {\n\t\t\t\tif (event.target._clicked) return\n\t\t\t\tevent.target._clicked = true\n\t\t\t\tevent.target.textContent = 'Loading...'\n\t\t\t\tawait d.callback()\n\t\t\t\ttip.hide()\n\t\t\t})\n\t}\n\n\tself.selectSamples = async function (plot, start, end, ss) {\n\t\tconst ls = self.getSampleList(plot, start, end)\n\t\tconst data = await ls.getData()\n\t\tconst table = ls.setTableData(data)\n\t\tconst samples = table[2]\n\t\tss.callback({\n\t\t\tsamples: await self.app.vocabApi.convertSampleId(samples, ss.attributes),\n\t\t\tsource: ss.defaultSelectionLabel || `Selected from violin`\n\t\t})\n\t}\n\n\t//get sample list for menu option callbacks\n\tself.getSampleList = function (plot, start, end) {\n\t\tconst { term, term2, term0 } = self.config\n\t\tconst bins = self.data.bins\n\t\tconst rangeStart = start !== undefined ? start : null\n\t\tconst rangeStop = end !== undefined ? end : null\n\n\t\tconst ls = new ListSamples({\n\t\t\tapp: self.app,\n\t\t\ttermfilter: self.state.termfilter,\n\t\t\tterm,\n\t\t\tterm2,\n\t\t\tterm0,\n\t\t\tplot,\n\t\t\tbins,\n\t\t\tstart: rangeStart,\n\t\t\tend: rangeStop\n\t\t})\n\t\treturn ls\n\t}\n\n\tself.callListSamples = async function (event, plot, start, end) {\n\t\tconst ls = self.getSampleList(plot, start, end)\n\t\tconst data = await ls.getData()\n\t\tconst [rows, columns] = ls.setTableData(data)\n\n\t\tconst tip = self.dom.sampletabletip\n\t\ttip.clear().show(event.clientX, event.clientY, false)\n\n\t\trenderTable({\n\t\t\trows,\n\t\t\tcolumns,\n\t\t\tdiv: tip.d,\n\t\t\tshowLines: true,\n\t\t\tmaxHeight: '40vh',\n\t\t\tresize: true,\n\t\t\tdataTestId: 'sjpp-listsampletable'\n\t\t})\n\t}\n\n\tself.labelHideLegendClicking = function (t2, plot) {\n\t\t// whoever wrote this tangled mess needs to be fired\n\t\tself.dom.legendDiv\n\t\t\t.selectAll('.sjpp-htmlLegend')\n\t\t\t.on('click', event => {\n\t\t\t\tevent.stopPropagation()\n\t\t\t\tconst d = event.target.__data__\n\t\t\t\tconst termNum =\n\t\t\t\t\tt2?.term.type === 'condition' ||\n\t\t\t\t\tt2?.term.type === 'samplelst' ||\n\t\t\t\t\tt2?.term.type === 'categorical' ||\n\t\t\t\t\t((t2?.term.type === 'float' || t2?.term.type === 'integer') && self.config.term?.q.mode === 'continuous')\n\t\t\t\t\t\t? 'term2'\n\t\t\t\t\t\t: 'term'\n\t\t\t\tconst term = self.config[termNum]\n\t\t\t\tif (t2) {\n\t\t\t\t\tfor (const key of Object.keys(term?.q?.hiddenValues)) {\n\t\t\t\t\t\tif (d.text === key) {\n\t\t\t\t\t\t\tdelete term.q.hiddenValues[key]\n\t\t\t\t\t\t}\n\t\t\t\t\t}\n\t\t\t\t\tconst isHidden = false\n\t\t\t\t\tself.app.dispatch({\n\t\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\t\tid: self.id,\n\t\t\t\t\t\tconfig: {\n\t\t\t\t\t\t\t[termNum]: {\n\t\t\t\t\t\t\t\tisAtomic: true,\n\t\t\t\t\t\t\t\tterm: term.term,\n\t\t\t\t\t\t\t\tq: getUpdatedQfromClick(plot, term, isHidden)\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t})\n\t\t\t.on('mouseover', event => {\n\t\t\t\tconst q = event.target.__data__\n\t\t\t\tif (q === undefined) return\n\t\t\t\tif (q.isHidden === true && q.isClickable === true) {\n\t\t\t\t\tself.dom.hovertip.clear().show(event.clientX, event.clientY).d.append('span').text('Click to unhide plot')\n\t\t\t\t}\n\t\t\t})\n\t\t\t.on('mouseout', function () {\n\t\t\t\tself.dom.hovertip.hide()\n\t\t\t})\n\t}\n}\n\nfunction getAddFilterCallback(self, plot, rangeStart, rangeStop) {\n\tconst ls = self.getSampleList(plot, rangeStart, rangeStop)\n\n\treturn () => {\n\t\tconst filterUiRoot = getFilterItemByTag(self.state.termfilter.filter, 'filterUiRoot')\n\t\tconst filter = filterJoin([filterUiRoot, ls.tvslst])\n\t\tfilter.tag = 'filterUiRoot'\n\t\tself.app.dispatch({\n\t\t\ttype: 'filter_replace',\n\t\t\tfilter\n\t\t})\n\t}\n}\n\nfunction getUpdatedQfromClick(plot, term, isHidden = false) {\n\tconst label = plot.label\n\tconst valueId = term?.term?.values ? term?.term?.values?.[label]?.label : label\n\tconst id = !valueId ? label : valueId\n\tconst q = term.q\n\tif (!q.hiddenValues) q.hiddenValues = {}\n\tif (isHidden) q.hiddenValues[id] = 1\n\telse delete q.hiddenValues[id]\n\treturn q\n}\n"],
+  "mappings": 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+}