@sjcrh/proteinpaint-client 2.191.4 → 2.192.0

package/dist/animatedBubbleChart-Q6Z5W2UL.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/animatedBubbleChart.ts"],
+  "sourcesContent": ["import type { MassState, BasePlotConfig } from '#mass/types/mass'\nimport { getCompInit, copyMerge, type RxComponent } from '#rx'\nimport { PlotBase } from './PlotBase'\nimport { Menu, Tabs } from '#dom'\nimport { dofetch3 } from '#common/dofetch'\nimport { scaleSqrt, arc as d3arc, select, packSiblings, packEnclose } from 'd3'\nimport { forceSimulation, forceCollide, forceX, forceY } from 'd3-force'\nimport { TermTypes } from '#shared/terms.js'\nimport { getColors } from '#shared/common.js'\n\nconst defaultConfig = { chartType: 'animatedBubbleChart' }\n\n// Fixed internal SVG coordinate space \u2014 the force simulation lives in this. The cluster\n// is centered at (SPLIT_W/2, SPLIT_H/2) in every mode. The visible wrapper is sized to the\n// actual bubble bounding box (see viewportW/H) and the SVG is offset so its content stays\n// centered, so toggling combined\u21C4split grows/shrinks the viewport around a fixed point.\nconst SPLIT_W = 1100\nconst SPLIT_H = 900\nconst MIN_R = 6 // smallest bubble total radius\nconst MAX_R = 43 // largest bubble total radius\nconst INNER_CIRCLE_RATIO = 0.75 // inner circle radius = INNER_CIRCLE_RATIO \u00D7 total radius\nconst RING_GAP = 1 // gap between inner circle and start of ring\nconst PADDING = 0 // collision padding outside the bubble's outer radius \u2014 touching bubbles, no whitespace\nconst HOVER_SCALE = 1.2 // how much the hovered bubble visually grows (multiplier, not a px size)\nconst HOVER_COLLIDE_BOOST = 1.4 // collide radius multiplier for hovered bubble\nconst HOVER_REPEL_REACH = 91 // px range over which the hovered bubble radially pushes others\nconst HOVER_REPEL_STRENGTH = 0.17 // intensity of the radial push\nconst GRAVITY_STRENGTH = 0.28 // strong center-gravity \u2014 bubbles stick to their home positions so each sub-cluster keeps its packed-circle shape instead of drifting loose\nconst HOVER_GRAVITY = 0.045 // weakened gravity during hover so neighbors don't snap back instantly\n\ntype Slice = {\n\tassay: string\n\trank: number | null\n\tweight: number | null\n\tangle: number\n\tstartAngle: number\n\tendAngle: number\n}\ntype Bubble = {\n\tgene: string\n\tintegrativeRank: number\n\torderStatQ: number | null\n\tpValue: number | null\n\tfdr: number | null\n\tslices: Slice[]\n\tinnerR: number\n\touterR: number\n\tx: number\n\ty: number\n\t// Velocity fields written by d3-force on every tick (used by hoverRepel to add radial push)\n\tvx?: number\n\tvy?: number\n\t// Target position from packSiblings \u2014 the bubble's \"home\" inside the perfect circle layout.\n\t// Simulation pulls toward these (not toward center), so the cluster settles into a true circle.\n\thomeX: number\n\thomeY: number\n\thovered: boolean\n}\n\nclass AnimatedBubbleChart extends PlotBase implements RxComponent {\n\tstatic type = 'animatedBubbleChart'\n\ttype: string\n\tdom!: { holder: any; controls: any; body: any; tip: Menu; header?: any }\n\tcomponents: any\n\tprivate simulation: any = null\n\tprivate selectedRankingKey: string | null = null\n\tprivate groupBy: 'all' | 'modality' = 'all'\n\t// State for the split-view toggle. Stored on the instance so the toggle handler\n\t// can recompute layout + restart the simulation without re-fetching data.\n\tprivate currentNodes: Bubble[] = []\n\tprivate currentAssays: string[] = []\n\t// 'all'-mode packed-cluster enclosing radius (+slack); set by computeHomes and used by\n\t// the per-tick circular clamp, so we don't pack the same nodes twice.\n\tprivate allModeBoundaryR = 0\n\tprivate modalityLabelsSel: any = null\n\t// Computed each time we enter split mode: where each modality's sub-cluster sits.\n\t// Sizes vary because we hierarchically pack groups by their natural cluster radii.\n\t// `topY` is the topmost EDGE of the cluster (min(homeY - outerR)) \u2014 bubble radii\n\t// aren't scaled with the layout, so the visual extent reaches farther up than\n\t// `cy - r*scale`. Labels use this so they always sit clear of every bubble.\n\tprivate groupCenters: { assay: string; cx: number; cy: number; r: number; topY: number }[] = []\n\tprivate svgSel: any = null\n\tprivate wrapperSel: any = null\n\t// Computed by `computeHomes` from the actual home positions + bubble radii.\n\t// Drives the wrapper's visible width/height so the chart frame hugs the cluster\n\t// instead of inheriting the much larger fixed SPLIT canvas size.\n\tprivate contentBbox: { minX: number; minY: number; maxX: number; maxY: number } = {\n\t\tminX: 0,\n\t\tminY: 0,\n\t\tmaxX: 0,\n\t\tmaxY: 0\n\t}\n\tprivate readonly BBOX_PAD = 20\n\n\t/** Internal SVG coordinate space \u2014 fixed, used by computeHomes for layout math. */\n\tprivate canvasW(): number {\n\t\treturn SPLIT_W\n\t}\n\tprivate canvasH(): number {\n\t\treturn SPLIT_H\n\t}\n\t/** Visible viewport \u2014 sized to the actual content bbox + padding, not a fixed constant. */\n\tprivate viewportW(): number {\n\t\treturn Math.max(50, this.contentBbox.maxX - this.contentBbox.minX + 2 * this.BBOX_PAD)\n\t}\n\tprivate viewportH(): number {\n\t\treturn Math.max(50, this.contentBbox.maxY - this.contentBbox.minY + 2 * this.BBOX_PAD)\n\t}\n\n\tconstructor(opts: any, api) {\n\t\tsuper(opts, api)\n\t\tthis.type = AnimatedBubbleChart.type\n\t\tthis.components = {}\n\t}\n\n\tasync init() {\n\t\tconst holder = this.opts.holder.append('div').style('padding', '10px')\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\tcontrols: holder\n\t\t\t\t.append('div')\n\t\t\t\t.style('display', 'flex')\n\t\t\t\t.style('gap', '14px')\n\t\t\t\t.style('align-items', 'center')\n\t\t\t\t.style('margin-bottom', '10px'),\n\t\t\tbody: holder.append('div'),\n\t\t\ttip: new Menu({ padding: '' }),\n\t\t\theader: this.opts.header\n\t\t}\n\t\tif (this.dom.header) this.dom.header.html('Bubble Chart')\n\t}\n\n\tgetState(appState: MassState) {\n\t\tconst config: any = appState.plots.find((p: BasePlotConfig) => p.id === this.id)\n\t\tif (!config) throw `No plot with id='${this.id}' found`\n\t\treturn { config }\n\t}\n\n\tasync main() {\n\t\tawait this.fetchAndRender(this.selectedRankingKey ?? undefined)\n\t}\n\n\tprivate async fetchAndRender(rankingKey?: string) {\n\t\tconst body: any = {\n\t\t\tgenome: this.app.opts.state.vocab.genome,\n\t\t\tdslabel: this.app.opts.state.vocab.dslabel\n\t\t}\n\t\tif (rankingKey) body.rankingKey = rankingKey\n\n\t\tconst data = await dofetch3('termdb/animatedBubbleChart', { body })\n\n\t\t// Stop any previous simulation before re-rendering\n\t\tif (this.simulation) {\n\t\t\tthis.simulation.stop()\n\t\t\tthis.simulation = null\n\t\t}\n\n\t\tif (data.error) {\n\t\t\t// Keep the dropdown usable so the user can pick another ranking\n\t\t\tif (data.rankingKeys?.length) this.renderControls(data.rankingKeys, rankingKey ?? data.rankingKeys[0])\n\t\t\tthis.dom.body.selectAll('*').remove()\n\t\t\tthis.dom.body.append('div').style('padding', '20px').style('color', '#b00020').text(`Error: ${data.error}`)\n\t\t\treturn\n\t\t}\n\n\t\tthis.selectedRankingKey = data.selectedRankingKey\n\n\t\tthis.renderControls(data.rankingKeys, data.selectedRankingKey)\n\t\tthis.dom.body.selectAll('*').remove()\n\n\t\tif (!data.bubbles?.length) {\n\t\t\tthis.dom.body\n\t\t\t\t.append('div')\n\t\t\t\t.style('padding', '20px')\n\t\t\t\t.style('color', '#666')\n\t\t\t\t.text('No data in the selected ranking file.')\n\t\t\treturn\n\t\t}\n\n\t\t// Auto-width flex container, left-aligned (no `justify-content: center`, no fixed\n\t\t// width) so there's no symmetric whitespace bracketing the chart and the legend sits\n\t\t// directly to the right of the wrapper. The wrapper is sized to the content bbox; the\n\t\t// SVG inside is absolutely positioned and offset (left/top) so the cluster stays\n\t\t// centered as the viewport grows/shrinks on mode toggle.\n\t\tconst container = this.dom.body\n\t\t\t.append('div')\n\t\t\t.style('display', 'flex')\n\t\t\t.style('gap', '24px')\n\t\t\t.style('align-items', 'flex-start')\n\t\t\t.style('flex-wrap', 'nowrap')\n\n\t\t// Assign a color per modality with the shared palette generator (same as\n\t\t// proteinView's getColors), domained on the dataset-ordered assay list so colors\n\t\t// are stable across re-fetches and consistent with other proteome charts.\n\t\tconst colorScale = getColors(data.assays.length).domain(data.assays)\n\t\tconst assayColors: { [a: string]: string } = {}\n\t\tfor (const a of data.assays) assayColors[a] = colorScale(a)\n\n\t\tthis.renderBubbles(container, data.bubbles, assayColors)\n\t\tthis.renderLegend(container, data.assays, assayColors)\n\t}\n\n\tprivate renderControls(rankingKeys: string[], current: string) {\n\t\tthis.dom.controls.selectAll('*').remove()\n\t\tconst sel = this.dom.controls.append('select').style('padding', '4px 8px').style('min-width', '200px')\n\t\tsel\n\t\t\t.selectAll('option')\n\t\t\t.data(rankingKeys)\n\t\t\t.enter()\n\t\t\t.append('option')\n\t\t\t.attr('value', (d: string) => d)\n\t\t\t.text((d: string) => d)\n\t\tsel.property('value', current)\n\t\tsel.on('change', () => this.fetchAndRender(sel.node().value))\n\n\t\t// Two-tab toggle (uses #dom's Tabs component) \u2014 the active mode is highlighted\n\t\t// so users can see at a glance whether the chart is currently combined or split.\n\t\tconst tabsHolder = this.dom.controls.append('div')\n\t\tconst tabsToggle = new Tabs({\n\t\t\tholder: tabsHolder,\n\t\t\tnoContent: true,\n\t\t\ttabs: [\n\t\t\t\t{\n\t\t\t\t\tlabel: 'Combined',\n\t\t\t\t\tactive: this.groupBy === 'all',\n\t\t\t\t\tcallback: () => {\n\t\t\t\t\t\tif (this.groupBy === 'all') return\n\t\t\t\t\t\tthis.groupBy = 'all'\n\t\t\t\t\t\tthis.applyGrouping()\n\t\t\t\t\t}\n\t\t\t\t},\n\t\t\t\t{\n\t\t\t\t\tlabel: 'Split by dominant data type',\n\t\t\t\t\tactive: this.groupBy === 'modality',\n\t\t\t\t\tcallback: () => {\n\t\t\t\t\t\tif (this.groupBy === 'modality') return\n\t\t\t\t\t\tthis.groupBy = 'modality'\n\t\t\t\t\t\tthis.applyGrouping()\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t]\n\t\t})\n\t\ttabsToggle.main()\n\t}\n\n\t/** Find the modality (assay) that contributes the largest slice to this gene's wheel. */\n\tprivate dominantAssay(node: Bubble): string {\n\t\tlet bestAssay = node.slices[0]?.assay ?? this.currentAssays[0]\n\t\tlet bestAngle = -1\n\t\tfor (const s of node.slices) {\n\t\t\tif (s.angle > bestAngle) {\n\t\t\t\tbestAngle = s.angle\n\t\t\t\tbestAssay = s.assay\n\t\t\t}\n\t\t}\n\t\treturn bestAssay\n\t}\n\n\t/** Compute homeX/homeY on every node based on the current `groupBy` mode. */\n\tprivate computeHomes() {\n\t\tconst nodes = this.currentNodes\n\t\tif (!nodes.length) return\n\n\t\tconst W = this.canvasW()\n\t\tconst H = this.canvasH()\n\n\t\tif (this.groupBy === 'all') {\n\t\t\t// One global packed-circle layout (same as the initial view)\n\t\t\tconst packInputs = nodes.map(n => ({ r: n.outerR, x: 0, y: 0 }))\n\t\t\tpackSiblings(packInputs)\n\t\t\tconst enclose = packEnclose(packInputs as any) ?? { x: 0, y: 0, r: Math.min(W, H) / 2 }\n\t\t\tconst dx = W / 2 - enclose.x\n\t\t\tconst dy = H / 2 - enclose.y\n\t\t\tfor (let i = 0; i < nodes.length; i++) {\n\t\t\t\tnodes[i].homeX = packInputs[i].x + dx\n\t\t\t\tnodes[i].homeY = packInputs[i].y + dy\n\t\t\t}\n\t\t\t// boundary for the per-tick clamp (+slack so a hover ripple can briefly bulge it)\n\t\t\tthis.allModeBoundaryR = enclose.r + 2\n\t\t\tthis.groupCenters = []\n\t\t\tthis.recordContentBbox()\n\t\t\treturn\n\t\t}\n\n\t\t// 'modality' mode \u2014 hierarchical packing. Each modality's bubbles are packed\n\t\t// into their own little circle (sizes vary because gene counts vary), and then\n\t\t// those CIRCLES are themselves packed together with packSiblings so a big\n\t\t// modality cluster claims more canvas space than a small one. No fixed grid.\n\t\tconst assays = this.currentAssays\n\t\t// Padding around each sub-cluster. Because `packSiblings` packs the super-circles\n\t\t// to TOUCH each other, the visible empty space between two adjacent clusters ends\n\t\t// up being LABEL_GAP \u00D7 2 (one gap from each cluster's own padding). And because the\n\t\t// whole layout often gets scaled down to fit the canvas, we need this value much\n\t\t// larger than the desired post-scale gap. With a scale around 0.7-0.8 this still\n\t\t// yields ~180-200 px of clearly visible whitespace between clusters.\n\t\tconst LABEL_GAP = 200\n\n\t\tconst buckets = new Map<string, Bubble[]>()\n\t\tfor (const a of assays) buckets.set(a, [])\n\t\tfor (const n of nodes) buckets.get(this.dominantAssay(n))?.push(n)\n\n\t\t// Inner pack \u2014 per-modality sub-cluster\n\t\ttype GroupLayout = {\n\t\t\tassay: string\n\t\t\tnodes: Bubble[]\n\t\t\tpacks: { r: number; x: number; y: number }[]\n\t\t\tenclose: { x: number; y: number; r: number }\n\t\t\tnaturalExtent: number\n\t\t}\n\t\tconst layouts: GroupLayout[] = []\n\t\tfor (const assay of assays) {\n\t\t\tconst groupNodes = buckets.get(assay) ?? []\n\t\t\tif (!groupNodes.length) continue\n\t\t\tconst packs = groupNodes.map(n => ({ r: n.outerR, x: 0, y: 0 }))\n\t\t\tpackSiblings(packs)\n\t\t\tconst enclose = packEnclose(packs as any) ?? { x: 0, y: 0, r: 0 }\n\t\t\t// Natural visible extent of this cluster \u2014 the max reach from enclose center\n\t\t\t// to any bubble's outer edge. Used both to size the super-circle (so adjacent\n\t\t\t// clusters don't overlap) and as the visible boundary radius.\n\t\t\tlet naturalExtent = 0\n\t\t\tfor (let j = 0; j < groupNodes.length; j++) {\n\t\t\t\tconst dx2 = packs[j].x - enclose.x\n\t\t\t\tconst dy2 = packs[j].y - enclose.y\n\t\t\t\tconst reach = Math.sqrt(dx2 * dx2 + dy2 * dy2) + groupNodes[j].outerR\n\t\t\t\tif (reach > naturalExtent) naturalExtent = reach\n\t\t\t}\n\t\t\tlayouts.push({ assay, nodes: groupNodes, packs, enclose, naturalExtent })\n\t\t}\n\n\t\t// Outer pack \u2014 each sub-cluster treated as a super-circle whose radius is its\n\t\t// REAL outer extent (not the smaller enclose) plus LABEL_GAP. Using the real\n\t\t// extent guarantees adjacent clusters don't overlap when their internal layouts\n\t\t// are kept at natural size below.\n\t\tconst superCircles = layouts.map(g => ({ r: g.naturalExtent + LABEL_GAP, x: 0, y: 0 }))\n\t\tpackSiblings(superCircles)\n\t\tconst overallEnclose = packEnclose(superCircles as any) ?? { x: 0, y: 0, r: 1 }\n\n\t\t// Scale to fit within the canvas if the arrangement is wider/taller than the\n\t\t// current mode's dimensions. (Lots of small bubbles can produce a large enclose.)\n\t\tconst margin = 10\n\t\tconst maxR = Math.min(W, H) / 2 - margin\n\t\tconst scale = overallEnclose.r > maxR ? maxR / overallEnclose.r : 1\n\t\tconst dx = W / 2 - overallEnclose.x * scale\n\t\tconst dy = H / 2 - overallEnclose.y * scale\n\n\t\tthis.groupCenters = []\n\t\tfor (let i = 0; i < layouts.length; i++) {\n\t\t\tconst g = layouts[i]\n\t\t\t// Cluster center IS scaled (so the overall arrangement of clusters fits the canvas)\n\t\t\tconst groupCx = superCircles[i].x * scale + dx\n\t\t\tconst groupCy = superCircles[i].y * scale + dy\n\t\t\t// But internal bubble positions are NOT scaled \u2014 each cluster keeps its natural\n\t\t\t// packSiblings layout. This is what stops forceCollide from pushing bubbles outside\n\t\t\t// the visible boundary: at natural packing distances, bubbles already don't overlap,\n\t\t\t// so collide does nothing and the cluster's visible extent matches `naturalExtent`.\n\t\t\tconst offX = groupCx - g.enclose.x\n\t\t\tconst offY = groupCy - g.enclose.y\n\t\t\tfor (let j = 0; j < g.nodes.length; j++) {\n\t\t\t\tg.nodes[j].homeX = g.packs[j].x + offX\n\t\t\t\tg.nodes[j].homeY = g.packs[j].y + offY\n\t\t\t}\n\t\t\tthis.groupCenters.push({\n\t\t\t\tassay: g.assay,\n\t\t\t\tcx: groupCx,\n\t\t\t\tcy: groupCy,\n\t\t\t\tr: g.naturalExtent,\n\t\t\t\ttopY: groupCy - g.naturalExtent\n\t\t\t})\n\t\t}\n\n\t\t// Final centering: `packEnclose` returns the smallest enclosing circle, but its\n\t\t// CENTER doesn't necessarily equal the cluster centroid when sub-cluster sizes\n\t\t// vary a lot (one big modality, several small ones). Shift everything so the\n\t\t// actual bubble bounding box is centered on the canvas \u2014 no asymmetric empty\n\t\t// bands on one side.\n\t\tlet minX = Infinity,\n\t\t\tminY = Infinity,\n\t\t\tmaxX = -Infinity,\n\t\t\tmaxY = -Infinity\n\t\tfor (const n of nodes) {\n\t\t\tif (n.homeX - n.outerR < minX) minX = n.homeX - n.outerR\n\t\t\tif (n.homeY - n.outerR < minY) minY = n.homeY - n.outerR\n\t\t\tif (n.homeX + n.outerR > maxX) maxX = n.homeX + n.outerR\n\t\t\tif (n.homeY + n.outerR > maxY) maxY = n.homeY + n.outerR\n\t\t}\n\t\tif (Number.isFinite(minX)) {\n\t\t\tconst shiftX = W / 2 - (minX + maxX) / 2\n\t\t\tconst shiftY = H / 2 - (minY + maxY) / 2\n\t\t\tfor (const n of nodes) {\n\t\t\t\tn.homeX += shiftX\n\t\t\t\tn.homeY += shiftY\n\t\t\t}\n\t\t\tfor (const g of this.groupCenters) {\n\t\t\t\tg.cx += shiftX\n\t\t\t\tg.cy += shiftY\n\t\t\t\tg.topY += shiftY\n\t\t\t}\n\t\t}\n\n\t\tthis.recordContentBbox()\n\t}\n\n\t/** Record the FINAL content bbox (after recentering) so the wrapper can hug the\n\t *  cluster instead of inheriting a fixed canvas size. Called by both modes. */\n\tprivate recordContentBbox() {\n\t\tconst nodes = this.currentNodes\n\t\tif (!nodes.length) return\n\t\tlet bx0 = Infinity,\n\t\t\tby0 = Infinity,\n\t\t\tbx1 = -Infinity,\n\t\t\tby1 = -Infinity\n\t\tfor (const n of nodes) {\n\t\t\tif (n.homeX - n.outerR < bx0) bx0 = n.homeX - n.outerR\n\t\t\tif (n.homeY - n.outerR < by0) by0 = n.homeY - n.outerR\n\t\t\tif (n.homeX + n.outerR > bx1) bx1 = n.homeX + n.outerR\n\t\t\tif (n.homeY + n.outerR > by1) by1 = n.homeY + n.outerR\n\t\t}\n\t\t// In split mode, extend bbox upward to include modality labels (sit at topY-32).\n\t\tif (this.groupBy === 'modality') {\n\t\t\tfor (const g of this.groupCenters) {\n\t\t\t\tconst labelY = g.topY - 32\n\t\t\t\tif (labelY < by0) by0 = labelY\n\t\t\t}\n\t\t}\n\t\tif (Number.isFinite(bx0)) {\n\t\t\tthis.contentBbox = { minX: bx0, minY: by0, maxX: bx1, maxY: by1 }\n\t\t}\n\t}\n\n\t/** Toggle handler \u2014 recompute homes for the current groupBy and reheat the simulation. */\n\tprivate applyGrouping() {\n\t\tthis.computeHomes()\n\n\t\t// Animate the wrapper's visible viewport (so combined \u21C4 split expands/contracts\n\t\t// AROUND the cluster, which itself stays anchored at the SVG's center). At the\n\t\t// same time, re-offset the SVG's left/top so its center keeps aligning with the\n\t\t// new wrapper's center \u2014 that's what stops the cluster from drifting right-down.\n\t\tif (this.wrapperSel) {\n\t\t\tthis.wrapperSel\n\t\t\t\t.transition()\n\t\t\t\t.duration(900)\n\t\t\t\t.style('width', `${this.viewportW()}px`)\n\t\t\t\t.style('height', `${this.viewportH()}px`)\n\t\t}\n\t\tif (this.svgSel) {\n\t\t\tthis.svgSel\n\t\t\t\t.transition()\n\t\t\t\t.duration(900)\n\t\t\t\t.style('left', `${this.BBOX_PAD - this.contentBbox.minX}px`)\n\t\t\t\t.style('top', `${this.BBOX_PAD - this.contentBbox.minY}px`)\n\t\t}\n\n\t\t// Modality labels share the same per-group center metadata.\n\t\t// In split mode: position the label just above\n\t\t// it (at cy \u2212 r \u2212 12). In combined mode: fade everything out IN PLACE so nothing\n\t\t// flies to a default coordinate.\n\t\tconst centerByAssay = new Map(this.groupCenters.map(g => [g.assay, g]))\n\n\t\tif (this.modalityLabelsSel) {\n\t\t\tconst labels = this.modalityLabelsSel.selectAll('text')\n\t\t\tif (this.groupBy === 'modality') {\n\t\t\t\tlabels\n\t\t\t\t\t.transition()\n\t\t\t\t\t.duration(900)\n\t\t\t\t\t.attr('opacity', (assay: string) => (centerByAssay.has(assay) ? 1 : 0))\n\t\t\t\t\t.attr('x', (assay: string) => centerByAssay.get(assay)?.cx ?? 0)\n\t\t\t\t\t.attr('y', (assay: string) => {\n\t\t\t\t\t\tconst g = centerByAssay.get(assay)\n\t\t\t\t\t\t// 12 px above the cluster's top edge \u2014 accurate since\n\t\t\t\t\t\t// g.r IS the cluster's natural extent (the visible boundary).\n\t\t\t\t\t\treturn g ? g.cy - g.r - 12 : 0\n\t\t\t\t\t})\n\t\t\t} else {\n\t\t\t\tlabels.transition().duration(400).attr('opacity', 0)\n\t\t\t}\n\t\t}\n\n\t\tif (this.simulation) {\n\t\t\t// Replace forceX/forceY (vallandingham pattern) so the force re-reads each node's\n\t\t\t// updated homeX/homeY into its internal target cache. Moderate alpha + higher\n\t\t\t// velocityDecay keeps the motion smooth instead of violent.\n\t\t\tthis.simulation\n\t\t\t\t.force('x', forceX<Bubble>((d: Bubble) => d.homeX).strength(GRAVITY_STRENGTH))\n\t\t\t\t.force('y', forceY<Bubble>((d: Bubble) => d.homeY).strength(GRAVITY_STRENGTH))\n\t\t\t\t.velocityDecay(0.55)\n\t\t\t\t.alpha(0.6)\n\t\t\t\t.alphaDecay(0.018)\n\t\t\t\t.restart()\n\t\t\t// Restore normal velocity decay + alpha decay after the transition has played out\n\t\t\t// so hover ripples behave normally afterwards.\n\t\t\tsetTimeout(() => {\n\t\t\t\tif (this.simulation) this.simulation.velocityDecay(0.4).alphaDecay(0.022)\n\t\t\t}, 2500)\n\t\t}\n\t}\n\n\tprivate renderBubbles(container: any, bubbles: any[], assayColors: { [a: string]: string }) {\n\t\t// Total-radius scale: rank 1 \u2192 MAX_R, rank N \u2192 MIN_R. Sqrt softens rank 1's dominance.\n\t\tconst maxRank = Math.max(...bubbles.map(b => b.integrativeRank))\n\t\tconst sizeScale = scaleSqrt().domain([1, maxRank]).range([MAX_R, MIN_R]).clamp(true)\n\n\t\tconst nodes: Bubble[] = bubbles.map(b => {\n\t\t\tconst outerR = sizeScale(b.integrativeRank) // bubble's outer radius (= ring outer radius)\n\t\t\tconst innerR = outerR * INNER_CIRCLE_RATIO // inner circle's visual radius \u2014 smaller now, ring is wider\n\t\t\t// Cumulative angles for slices\n\t\t\tconst slices: Slice[] = []\n\t\t\tlet cum = 0\n\t\t\tfor (const s of b.slices) {\n\t\t\t\tconst start = cum\n\t\t\t\tconst end = cum + s.angle\n\t\t\t\tslices.push({ ...s, startAngle: start, endAngle: end })\n\t\t\t\tcum = end\n\t\t\t}\n\t\t\treturn {\n\t\t\t\tgene: b.gene,\n\t\t\t\tintegrativeRank: b.integrativeRank,\n\t\t\t\torderStatQ: b.orderStatQ,\n\t\t\t\tpValue: b.pValue,\n\t\t\t\tfdr: b.fdr,\n\t\t\t\tslices,\n\t\t\t\tinnerR,\n\t\t\t\touterR,\n\t\t\t\t// Seed positions in a small jitter around center so the simulation pulls them outward to home\n\t\t\t\tx: this.canvasW() / 2 + (Math.random() - 0.5) * 80,\n\t\t\t\ty: this.canvasH() / 2 + (Math.random() - 0.5) * 80,\n\t\t\t\thomeX: 0, // filled in by packSiblings below\n\t\t\t\thomeY: 0,\n\t\t\t\thovered: false\n\t\t\t}\n\t\t})\n\n\t\t// Store state on the instance so the toggle handler can recompute layout later\n\t\t// without re-fetching data.\n\t\tthis.currentNodes = nodes\n\t\tthis.currentAssays = Object.keys(assayColors)\n\n\t\t// Initial layout \u2014 packed circle ('all' mode) or per-modality sub-clusters ('modality').\n\t\t// In 'all' mode this also sets this.allModeBoundaryR (used by the per-tick clamp).\n\t\tthis.computeHomes()\n\n\t\t// Wrapper crops the SVG to the current mode's viewport; the SVG is positioned\n\t\t// absolutely so its content stays centered. The viewport is sized to the content\n\t\t// bbox and re-offset on mode toggle so the cluster doesn't drift on split.\n\t\tconst wrapper = container\n\t\t\t.append('div')\n\t\t\t.style('position', 'relative')\n\t\t\t.style('overflow', 'hidden')\n\t\t\t.style('width', `${this.viewportW()}px`)\n\t\t\t.style('height', `${this.viewportH()}px`)\n\t\tthis.wrapperSel = wrapper\n\n\t\tconst svg = wrapper\n\t\t\t.append('svg')\n\t\t\t.attr('width', this.canvasW())\n\t\t\t.attr('height', this.canvasH())\n\t\t\t.style('position', 'absolute')\n\t\t\t.style('left', `${this.BBOX_PAD - this.contentBbox.minX}px`)\n\t\t\t.style('top', `${this.BBOX_PAD - this.contentBbox.minY}px`)\n\t\tthis.svgSel = svg\n\n\t\tconst root = svg.append('g')\n\n\t\t// Sub-groups (split mode) are identified by their label + the spatial clustering of\n\t\t// bubbles alone \u2014 there are no visible cluster-boundary circles.\n\t\tconst arcGen = d3arc<Slice>()\n\t\t\t.startAngle((d: Slice) => d.startAngle)\n\t\t\t.endAngle((d: Slice) => d.endAngle)\n\n\t\tconst groups = root\n\t\t\t.selectAll('g.sjpp-abc-bubble')\n\t\t\t.data(nodes)\n\t\t\t.enter()\n\t\t\t.append('g')\n\t\t\t.attr('class', 'sjpp-abc-bubble')\n\t\t\t.attr('transform', (d: Bubble) => `translate(${d.x},${d.y})`)\n\t\t\t.style('cursor', 'pointer')\n\t\t\t.attr('role', 'button')\n\t\t\t.attr('tabindex', 0)\n\t\t\t.attr('aria-label', (d: Bubble) => `Open protein view for ${d.gene}`)\n\t\t// Invisible hit-area circle covering the entire bubble (outer radius). Sits behind\n\t\t// every visible element so it doesn't obscure anything, but captures pointer events\n\t\t// across the inner-circle \u2194 ring gap. Without it, mouseenter/mouseleave fires\n\t\t// spuriously when the cursor crosses that gap.\n\t\tgroups\n\t\t\t.append('circle')\n\t\t\t.attr('class', 'hit-area')\n\t\t\t.attr('r', (d: Bubble) => d.outerR)\n\t\t\t.attr('fill', 'transparent')\n\n\t\t// Ring slices \u2014 rendered first so the inner circle sits on top\n\t\tgroups.each(function (this: SVGGElement, d: Bubble) {\n\t\t\tconst slicesG = select(this).append('g').attr('class', 'ring')\n\t\t\tconst visible = d.slices.filter(s => s.angle > 0)\n\t\t\tslicesG\n\t\t\t\t.selectAll('path')\n\t\t\t\t.data(visible)\n\t\t\t\t.enter()\n\t\t\t\t.append('path')\n\t\t\t\t.attr('fill', (s: Slice) => assayColors[s.assay] ?? '#999')\n\t\t\t\t.attr('stroke', '#fff')\n\t\t\t\t.attr('stroke-width', 0.8)\n\t\t\t\t.attr('opacity', 0)\n\t\t\t\t.attr('d', (s: Slice) =>\n\t\t\t\t\tarcGen({\n\t\t\t\t\t\t...s,\n\t\t\t\t\t\tinnerRadius: d.innerR + RING_GAP,\n\t\t\t\t\t\touterRadius: d.outerR\n\t\t\t\t\t} as any)\n\t\t\t\t)\n\t\t})\n\n\t\t// Inner circle \u2014 starts at radius 0 and transitions out\n\t\tgroups\n\t\t\t.append('circle')\n\t\t\t.attr('class', 'inner')\n\t\t\t.attr('r', 0)\n\t\t\t.attr('fill', '#fff')\n\t\t\t.attr('stroke', '#333')\n\t\t\t.attr('stroke-width', 1)\n\n\t\t// Gene label \u2014 font scales with bubble size. Also bounded by label width so long names fit inside small bubbles.\n\t\tconst labelFontSize = (d: Bubble) => {\n\t\t\tconst byRadius = d.innerR * 0.72\n\t\t\t// Heuristic: each character ~0.6 \u00D7 fontSize wide; keep the text inside ~1.8 \u00D7 innerR\n\t\t\tconst maxByWidth = (d.innerR * 1.8) / Math.max(d.gene.length * 0.6, 1)\n\t\t\treturn Math.max(5, Math.min(byRadius, maxByWidth, 20))\n\t\t}\n\t\tgroups\n\t\t\t.append('text')\n\t\t\t.attr('text-anchor', 'middle')\n\t\t\t.attr('dominant-baseline', 'central')\n\t\t\t.attr('font-weight', 'bold')\n\t\t\t.attr('font-size', (d: Bubble) => `${labelFontSize(d)}px`)\n\t\t\t.attr('fill', '#222')\n\t\t\t.attr('pointer-events', 'none')\n\t\t\t.attr('opacity', 0)\n\t\t\t.text((d: Bubble) => d.gene)\n\n\t\t// Tooltip handlers on the entire <g>\n\t\tconst tip = this.dom.tip\n\t\tgroups\n\t\t\t.on('mouseenter', (event: MouseEvent, d: Bubble) => {\n\t\t\t\t// Mark hovered \u2192 collide accessor inflates its radius \u2192 neighbors get pushed outward.\n\t\t\t\t// Weaken center gravity so the displaced neighbors actually move OUT instead of\n\t\t\t\t// being immediately re-clustered toward center.\n\t\t\t\td.hovered = true\n\t\t\t\tif (this.simulation) {\n\t\t\t\t\tthis.simulation.force('x')!.strength(HOVER_GRAVITY)\n\t\t\t\t\tthis.simulation.force('y')!.strength(HOVER_GRAVITY)\n\t\t\t\t\tthis.simulation.alpha(0.5).restart()\n\t\t\t\t}\n\t\t\t\ttip.clear().show(event.clientX, event.clientY)\n\t\t\t\tconst t = tip.d.append('div').style('padding', '8px').style('font-size', '13px').style('min-width', '220px')\n\t\t\t\tt.append('div')\n\t\t\t\t\t.style('font-weight', 'bold')\n\t\t\t\t\t.style('font-size', '15px')\n\t\t\t\t\t.style('margin-bottom', '4px')\n\t\t\t\t\t.text(d.gene)\n\t\t\t\tt.append('div').text(`Integrative rank: ${d.integrativeRank}`)\n\t\t\t\tif (d.orderStatQ != null) t.append('div').text(`Order statistic Q: ${d.orderStatQ.toExponential(3)}`)\n\t\t\t\tif (d.pValue != null)\n\t\t\t\t\tt.append('div').text(`P value: ${d.pValue >= 0.0001 ? d.pValue.toFixed(4) : d.pValue.toExponential(3)}`)\n\t\t\t\tif (d.fdr != null) t.append('div').text(`FDR: ${d.fdr >= 0.0001 ? d.fdr.toFixed(4) : d.fdr.toExponential(3)}`)\n\t\t\t\tconst table = t\n\t\t\t\t\t.append('table')\n\t\t\t\t\t.style('margin-top', '6px')\n\t\t\t\t\t.style('border-collapse', 'collapse')\n\t\t\t\t\t.style('font-size', '12px')\n\t\t\t\tconst header = table.append('tr')\n\t\t\t\theader.append('th').style('text-align', 'left').style('padding', '2px 6px').text('Data Type')\n\t\t\t\theader.append('th').style('text-align', 'right').style('padding', '2px 6px').text('Rank')\n\t\t\t\theader.append('th').style('text-align', 'right').style('padding', '2px 6px').text('Share')\n\t\t\t\tfor (const s of d.slices) {\n\t\t\t\t\tconst row = table.append('tr')\n\t\t\t\t\tconst swatch = row.append('td').style('padding', '2px 6px')\n\t\t\t\t\tswatch\n\t\t\t\t\t\t.append('span')\n\t\t\t\t\t\t.style('display', 'inline-block')\n\t\t\t\t\t\t.style('width', '10px')\n\t\t\t\t\t\t.style('height', '10px')\n\t\t\t\t\t\t.style('background', assayColors[s.assay] ?? '#999')\n\t\t\t\t\t\t.style('margin-right', '6px')\n\t\t\t\t\t\t.style('vertical-align', 'middle')\n\t\t\t\t\tswatch.append('span').text(s.assay)\n\t\t\t\t\trow\n\t\t\t\t\t\t.append('td')\n\t\t\t\t\t\t.style('padding', '2px 6px')\n\t\t\t\t\t\t.style('text-align', 'right')\n\t\t\t\t\t\t.text(s.rank == null ? 'NA' : String(s.rank))\n\t\t\t\t\trow\n\t\t\t\t\t\t.append('td')\n\t\t\t\t\t\t.style('padding', '2px 6px')\n\t\t\t\t\t\t.style('text-align', 'right')\n\t\t\t\t\t\t.text(s.weight == null ? '\u2014' : `${(s.weight * 100).toFixed(1)}%`)\n\t\t\t\t}\n\t\t\t})\n\t\t\t.on('mouseleave', (_event: MouseEvent, d: Bubble) => {\n\t\t\t\td.hovered = false\n\t\t\t\t// Restore center gravity gradually so the cluster eases back together\n\t\t\t\t// instead of snapping. Low alpha + standard gravity = a slow drift inward.\n\t\t\t\tif (this.simulation) {\n\t\t\t\t\tthis.simulation.force('x')!.strength(GRAVITY_STRENGTH)\n\t\t\t\t\tthis.simulation.force('y')!.strength(GRAVITY_STRENGTH)\n\t\t\t\t\tthis.simulation.alpha(0.25).restart()\n\t\t\t\t}\n\t\t\t\ttip.hide()\n\t\t\t})\n\t\t\t.on('click keydown', (event: MouseEvent | KeyboardEvent, d: Bubble) => {\n\t\t\t\tif (event.type === 'keydown') {\n\t\t\t\t\tconst ke = event as KeyboardEvent\n\t\t\t\t\tif (ke.key !== 'Enter' && ke.key !== ' ') return\n\t\t\t\t\tke.preventDefault()\n\t\t\t\t}\n\t\t\t\t// Launch a proteinView chart for the clicked gene \u2014 same dispatch shape used\n\t\t\t\t// by the \"Protein Selection\" chart-button menu after a gene is typed in.\n\t\t\t\ttip.hide()\n\t\t\t\tthis.app.dispatch({\n\t\t\t\t\ttype: 'plot_create',\n\t\t\t\t\tconfig: {\n\t\t\t\t\t\tchartType: 'proteinView',\n\t\t\t\t\t\ttw: {\n\t\t\t\t\t\t\tterm: {\n\t\t\t\t\t\t\t\tgene: d.gene,\n\t\t\t\t\t\t\t\tname: d.gene,\n\t\t\t\t\t\t\t\ttype: TermTypes.PROTEOME_ABUNDANCE\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t})\n\n\t\t// Animate entry \u2014 circles & ring slices grow/fade in\n\t\tgroups\n\t\t\t.select('circle.inner')\n\t\t\t.transition()\n\t\t\t.duration(900)\n\t\t\t.attr('r', (d: any) => d.innerR)\n\t\tgroups.select('g.ring').selectAll('path').transition().delay(200).duration(900).attr('opacity', 0.95)\n\t\tgroups.select('text').transition().delay(500).duration(600).attr('opacity', 1)\n\n\t\t// Modality labels \u2014 appended AFTER the bubble groups so SVG draw order puts them\n\t\t// on top. Each label is data-joined to its assay name; `applyGrouping` reads\n\t\t// `this.groupCenters` to position each label above its sub-cluster.\n\t\tconst assayNames = this.currentAssays\n\t\tconst labelsG = svg.append('g').attr('class', 'modality-labels')\n\t\tlabelsG\n\t\t\t.selectAll('text')\n\t\t\t.data(assayNames)\n\t\t\t.enter()\n\t\t\t.append('text')\n\t\t\t.attr('text-anchor', 'middle')\n\t\t\t.attr('dominant-baseline', 'alphabetic')\n\t\t\t.attr('font-size', '13px')\n\t\t\t.attr('font-weight', 'bold')\n\t\t\t.attr('paint-order', 'stroke') // white outline behind text so it stays readable over bubbles\n\t\t\t.attr('stroke', '#fff')\n\t\t\t.attr('stroke-width', 3)\n\t\t\t.attr('stroke-linejoin', 'round')\n\t\t\t.attr('fill', (d: string) => assayColors[d] ?? '#333')\n\t\t\t.attr('opacity', 0)\n\t\t\t.attr('x', this.canvasW() / 2)\n\t\t\t.attr('y', 12)\n\t\t\t.text((d: string) => d)\n\t\tthis.modalityLabelsSel = labelsG\n\t\t// If we re-rendered while groupBy is already 'modality' (e.g., user switched ranking\n\t\t// file while split), reposition labels immediately for the new node set.\n\t\tif (this.groupBy === 'modality') {\n\t\t\tconst centerByAssay = new Map(this.groupCenters.map(g => [g.assay, g]))\n\t\t\tlabelsG\n\t\t\t\t.selectAll('text')\n\t\t\t\t.attr('opacity', (assay: string) => (centerByAssay.has(assay) ? 1 : 0))\n\t\t\t\t.attr('x', (assay: string) => centerByAssay.get(assay)?.cx ?? this.canvasW() / 2)\n\t\t\t\t.attr('y', (assay: string) => {\n\t\t\t\t\tconst g = centerByAssay.get(assay)\n\t\t\t\t\treturn g ? g.cy - g.r - 8 : 12\n\t\t\t\t})\n\t\t}\n\n\t\t// Force simulation \u2014 each bubble is pulled toward its OWN packed \"home\" position\n\t\t// (computed above by packSiblings), giving a true circle-packed layout instead of\n\t\t// the soft disk that center-only gravity produces.\n\t\tconst collideR = (d: Bubble) => (d.hovered ? d.outerR * HOVER_COLLIDE_BOOST : d.outerR) + PADDING\n\n\t\t// Custom force: when a bubble is hovered, radially push other bubbles away from it.\n\t\t// Reach and strength scale with the hovered bubble's size \u2014 a tiny bubble produces\n\t\t// a small ripple, the biggest produces the full one. Otherwise hovering the smallest\n\t\t// dot would displace neighbors as aggressively as hovering the largest anchor bubble.\n\t\tfunction hoverRepel(alpha: number) {\n\t\t\tconst h = nodes.find(n => n.hovered)\n\t\t\tif (!h) return\n\t\t\tconst sizeRatio = h.outerR / MAX_R // 0..1, where 1 = max-sized bubble\n\t\t\tconst reach = HOVER_REPEL_REACH * sizeRatio\n\t\t\tconst strength = HOVER_REPEL_STRENGTH * sizeRatio\n\t\t\tif (reach < 1) return\n\t\t\tfor (const n of nodes) {\n\t\t\t\tif (n === h) continue\n\t\t\t\tconst dx = n.x - h.x\n\t\t\t\tconst dy = n.y - h.y\n\t\t\t\tconst dist = Math.sqrt(dx * dx + dy * dy) || 0.01\n\t\t\t\tif (dist >= reach) continue\n\t\t\t\tconst falloff = 1 - dist / reach\n\t\t\t\tconst push = strength * falloff * alpha\n\t\t\t\tn.vx = (n.vx ?? 0) + (dx / dist) * push * reach\n\t\t\t\tn.vy = (n.vy ?? 0) + (dy / dist) * push * reach\n\t\t\t}\n\t\t}\n\n\t\tthis.simulation = forceSimulation<Bubble>(nodes)\n\t\t\t.force('collide', forceCollide<Bubble>(collideR).strength(1).iterations(2))\n\t\t\t.force('x', forceX<Bubble>((d: Bubble) => d.homeX).strength(GRAVITY_STRENGTH))\n\t\t\t.force('y', forceY<Bubble>((d: Bubble) => d.homeY).strength(GRAVITY_STRENGTH))\n\t\t\t.force('hoverRepel', hoverRepel)\n\t\t\t.alpha(1)\n\t\t\t.alphaDecay(0.022)\n\t\t\t.alphaMin(0.001)\n\t\t\t.on('tick', () => {\n\t\t\t\t// In 'all' mode the cluster is one big circle, so clamp every bubble inside\n\t\t\t\t// its enclosing radius \u2014 otherwise the perimeter would deform into a square\n\t\t\t\t// against canvas edges. In 'modality' (split) mode, each sub-cluster has its\n\t\t\t\t// own center and the clamp doesn't apply globally; bubbles are kept in place\n\t\t\t\t// by their per-group home-position gravity instead.\n\t\t\t\tif (this.groupBy === 'all') {\n\t\t\t\t\tconst cxC = this.canvasW() / 2\n\t\t\t\t\tconst cyC = this.canvasH() / 2\n\t\t\t\t\tfor (const d of nodes) {\n\t\t\t\t\t\tconst ddx = d.x - cxC\n\t\t\t\t\t\tconst ddy = d.y - cyC\n\t\t\t\t\t\tconst dist = Math.sqrt(ddx * ddx + ddy * ddy) || 0.0001\n\t\t\t\t\t\tconst maxDist = this.allModeBoundaryR - d.outerR\n\t\t\t\t\t\tif (dist > maxDist) {\n\t\t\t\t\t\t\td.x = cxC + (ddx * maxDist) / dist\n\t\t\t\t\t\t\td.y = cyC + (ddy * maxDist) / dist\n\t\t\t\t\t\t}\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tgroups.attr('transform', (d: Bubble) => `translate(${d.x},${d.y})${d.hovered ? ` scale(${HOVER_SCALE})` : ''}`)\n\t\t\t})\n\t}\n\n\tprivate renderLegend(container: any, assays: string[], assayColors: { [a: string]: string }) {\n\t\tconst legend = container\n\t\t\t.append('div')\n\t\t\t.style('display', 'flex')\n\t\t\t.style('flex-direction', 'column')\n\t\t\t.style('gap', '6px')\n\t\t\t.style('padding', '4px 0')\n\t\t\t.style('min-width', '160px')\n\t\tlegend\n\t\t\t.append('div')\n\t\t\t.style('font-weight', 'bold')\n\t\t\t.style('font-size', '13px')\n\t\t\t.style('margin-bottom', '4px')\n\t\t\t.text('Data Type')\n\t\tfor (const assay of assays) {\n\t\t\tconst row = legend\n\t\t\t\t.append('div')\n\t\t\t\t.style('display', 'flex')\n\t\t\t\t.style('align-items', 'center')\n\t\t\t\t.style('gap', '8px')\n\t\t\t\t.style('font-size', '12px')\n\t\t\trow\n\t\t\t\t.append('span')\n\t\t\t\t.style('display', 'inline-block')\n\t\t\t\t.style('width', '14px')\n\t\t\t\t.style('height', '14px')\n\t\t\t\t.style('background', assayColors[assay] ?? '#999')\n\t\t\t\t.style('border', '1px solid #ccc')\n\t\t\trow.append('span').text(assay)\n\t\t}\n\t}\n}\n\nexport const componentInit = getCompInit(AnimatedBubbleChart)\n\nexport async function getPlotConfig(opts: any) {\n\tconst config = structuredClone(defaultConfig)\n\treturn copyMerge(config, opts)\n}\n"],
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+  "names": ["dx", "dy"]
+}

package/dist/app-FX3KZ67X.js

@@ -0,0 +1,37 @@
+import {
+  appInit
+} from "./chunk-KUZPTJJO.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-LSEFWW72.js";
+import "./chunk-C4BCMAIK.js";
+import "./chunk-HYOEWQ5P.js";
+import "./chunk-HBW42TDT.js";
+import "./chunk-LQJMCE7G.js";
+import "./chunk-FN5XPUPH.js";
+import "./chunk-IIT367QZ.js";
+import "./chunk-RZGEKL77.js";
+import "./chunk-Z457XQSX.js";
+import "./chunk-AI2LUQS6.js";
+import "./chunk-2JR7RPB6.js";
+import "./chunk-7IYJZZQI.js";
+import "./chunk-M3J4MINX.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-TLTS33EY.js";
+import "./chunk-2U2CP2Y2.js";
+import "./chunk-ZF6HNVYD.js";
+import "./chunk-BKPDYW5T.js";
+import "./chunk-JNITUVXP.js";
+import "./chunk-TJYRBEBK.js";
+import "./chunk-LOZEKOES.js";
+import "./chunk-VQZ2Z5YU.js";
+import "./chunk-SOTB4FRE.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-KYBIQBXE.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-OMR2DT66.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-HFNDKYVF.js";
+export {
+  appInit
+};
+//# sourceMappingURL=app-FX3KZ67X.js.map

package/dist/app-X7ZYEOZN.js

@@ -0,0 +1,49 @@
+import {
+  appInit
+} from "./chunk-O6WL7USJ.js";
+import "./chunk-DMSX5PSO.js";
+import "./chunk-SKMFMGCD.js";
+import "./chunk-FVHUROIJ.js";
+import "./chunk-7R63MAPC.js";
+import "./chunk-PXOH4ZN2.js";
+import "./chunk-M7UKOCJA.js";
+import "./chunk-MHFH66I3.js";
+import "./chunk-4KY4XKJV.js";
+import "./chunk-NEKAGDTL.js";
+import "./chunk-IEYDMN3H.js";
+import "./chunk-PRZWSBMA.js";
+import "./chunk-KUZPTJJO.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-LSEFWW72.js";
+import "./chunk-C4BCMAIK.js";
+import "./chunk-HYOEWQ5P.js";
+import "./chunk-HBW42TDT.js";
+import "./chunk-LQJMCE7G.js";
+import "./chunk-FN5XPUPH.js";
+import "./chunk-IIT367QZ.js";
+import "./chunk-RZGEKL77.js";
+import "./chunk-Z457XQSX.js";
+import "./chunk-AI2LUQS6.js";
+import "./chunk-2JR7RPB6.js";
+import "./chunk-7IYJZZQI.js";
+import "./chunk-M3J4MINX.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-TLTS33EY.js";
+import "./chunk-2U2CP2Y2.js";
+import "./chunk-ZF6HNVYD.js";
+import "./chunk-BKPDYW5T.js";
+import "./chunk-JNITUVXP.js";
+import "./chunk-TJYRBEBK.js";
+import "./chunk-LOZEKOES.js";
+import "./chunk-VQZ2Z5YU.js";
+import "./chunk-SOTB4FRE.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-KYBIQBXE.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-OMR2DT66.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-HFNDKYVF.js";
+export {
+  appInit
+};
+//# sourceMappingURL=app-X7ZYEOZN.js.map

package/dist/app.js

@@ -1,41 +1,41 @@
 import {
   bindProteinPaint,
   runproteinpaint
-} from "./chunk-74ZU4BT6.js";
-import "./chunk-IW57W7EQ.js";
-import "./chunk-ZTYNN6G5.js";
-import "./chunk-DKVUOBIE.js";
+} from "./chunk-FDPWWODM.js";
+import "./chunk-UQ5CDHYF.js";
+import "./chunk-TTC4MNEM.js";
+import "./chunk-D5CVYITI.js";
 import "./chunk-PRZWSBMA.js";
-import "./chunk-LTOBEUM2.js";
+import "./chunk-E76O5Z42.js";
 import "./chunk-MKAF2BHB.js";
 import "./chunk-WKNI3HRQ.js";
-import "./chunk-VGYTAYFK.js";
-import "./chunk-67DBIM6H.js";
-import "./chunk-SA7APTJR.js";
+import "./chunk-A4Z3CI24.js";
+import "./chunk-PSJVMAWA.js";
+import "./chunk-KUZPTJJO.js";
 import "./chunk-HJ6L54YS.js";
 import "./chunk-LSEFWW72.js";
-import "./chunk-SKREEF3H.js";
+import "./chunk-C4BCMAIK.js";
 import "./chunk-HYOEWQ5P.js";
 import "./chunk-HBW42TDT.js";
-import "./chunk-G6O3URDN.js";
+import "./chunk-LQJMCE7G.js";
 import "./chunk-FN5XPUPH.js";
 import "./chunk-IIT367QZ.js";
 import "./chunk-RZGEKL77.js";
-import "./chunk-UI7OCM2A.js";
-import "./chunk-YZK37YCC.js";
-import "./chunk-7EMWHCVW.js";
+import "./chunk-Z457XQSX.js";
+import "./chunk-AI2LUQS6.js";
+import "./chunk-2JR7RPB6.js";
 import "./chunk-7IYJZZQI.js";
 import "./chunk-M3J4MINX.js";
 import "./chunk-PF4DSFDR.js";
-import "./chunk-QH6W3NVF.js";
-import "./chunk-NOEAT6CX.js";
-import "./chunk-4UWS5Y3N.js";
-import "./chunk-DD4R5P6W.js";
+import "./chunk-TLTS33EY.js";
+import "./chunk-2U2CP2Y2.js";
+import "./chunk-ZF6HNVYD.js";
+import "./chunk-BKPDYW5T.js";
 import "./chunk-JNITUVXP.js";
-import "./chunk-KSGA62R2.js";
+import "./chunk-TJYRBEBK.js";
 import "./chunk-LOZEKOES.js";
-import "./chunk-TOU7EVFQ.js";
-import "./chunk-OAWQ6LOO.js";
+import "./chunk-VQZ2Z5YU.js";
+import "./chunk-SOTB4FRE.js";
 import "./chunk-TLT4YIG3.js";
 import "./chunk-KYBIQBXE.js";
 import "./chunk-I6Y4O3RR.js";