@sjcrh/proteinpaint-client 2.183.0 → 2.183.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-PBJ3POZQ.js +1371 -0
- package/dist/AIProjectAdmin-5IAXCACJ.js +830 -0
- package/dist/AppHeader-HLUE2IQT.js +833 -0
- package/dist/BoxPlot-NAQS5MHV.js +1217 -0
- package/dist/CorrelationVolcano-TVVUP4L4.js +617 -0
- package/dist/DE-F7LUSAO2.js +93 -0
- package/dist/DEinput-V7MF5IEZ.js +297 -0
- package/dist/DifferentialAnalysis-R2Z7G75Y.js +238 -0
- package/dist/Disco-7S5KUVQ6.js +3235 -0
- package/dist/Disco.UI-6ONZR7GK.js +242 -0
- package/dist/DmrPlot-NZXGFMBY.js +640 -0
- package/dist/GB-3EXBSESG.js +1125 -0
- package/dist/HicApp-WEYV7T46.js +2248 -0
- package/dist/NumBinaryEditor-SNJD6NVL.js +268 -0
- package/dist/NumBinaryEditor.unit.spec-A7C4A2HF.js +284 -0
- package/dist/NumContEditor-TBOEORWJ.js +105 -0
- package/dist/NumContEditor.unit.spec-BJKQNFPL.js +167 -0
- package/dist/NumCustomBinEditor-RNWEGLLB.js +36 -0
- package/dist/NumCustomBinEditor.unit.spec-CW3D5WOW.js +282 -0
- package/dist/NumDiscreteEditor-WXRAMEWQ.js +177 -0
- package/dist/NumDiscreteEditor.unit.spec-SJTHYGMI.js +200 -0
- package/dist/NumRegularBinEditor-LLSKHSJC.js +36 -0
- package/dist/NumRegularBinEditor.unit.spec-G3YRWT52.js +225 -0
- package/dist/NumSplineEditor-W6HG3I53.js +190 -0
- package/dist/NumSplineEditor.unit.spec-BVVTYJY7.js +197 -0
- package/dist/NumericDensity-VYAZXP4D.js +36 -0
- package/dist/NumericDensity.unit.spec-4QCKG6GM.js +219 -0
- package/dist/NumericHandler-PKCERKLB.js +37 -0
- package/dist/NumericHandler.unit.spec-JIYZ3IFG.js +217 -0
- package/dist/RunChart2-I4ZBBKOC.js +756 -0
- package/dist/SC-OLNRPTNS.js +682 -0
- package/dist/Volcano-DEOVDPYB.js +1185 -0
- package/dist/WSIViewer-VA36EDFH.js +47974 -0
- package/dist/WsiSamplesPlot-RA644FK6.js +163 -0
- package/dist/adSandbox-SJ3O3RVJ.js +36 -0
- package/dist/alphaGenome-UTVIVOEF.js +173 -0
- package/dist/app-6UPJNZVS.js +35 -0
- package/dist/app-YFBAT5TM.js +47 -0
- package/dist/app.js +20 -20
- package/dist/bam-C4KHGT7X.js +857 -0
- package/dist/barchart-UOELLJAZ.js +45 -0
- package/dist/barchart.data-EYZ3W4BQ.js +22 -0
- package/dist/barchart.events-SJZZV3TI.js +45 -0
- package/dist/barchart.integration.spec-A4XZNV3B.js +1675 -0
- package/dist/block-ODDURI6Y.js +6200 -0
- package/dist/block.init-TZXJGL7D.js +36 -0
- package/dist/block.mds.expressionrank-UE2D6D3N.js +357 -0
- package/dist/block.mds.geneboxplot-KINAWY6K.js +826 -0
- package/dist/block.mds.junction-HRJQOYBL.js +1543 -0
- package/dist/block.mds.svcnv-7C2IMZXB.js +6799 -0
- package/dist/block.svg-757BH6PD.js +162 -0
- package/dist/block.tk.aicheck-M4VAVJL6.js +281 -0
- package/dist/block.tk.ase-J5HCPECM.js +363 -0
- package/dist/block.tk.bam-7NFAMVLF.js +1904 -0
- package/dist/block.tk.bedgraphdot-HROSDQH5.js +382 -0
- package/dist/block.tk.bigwig.ui-BIMVFUT6.js +209 -0
- package/dist/block.tk.hicstraw-W7CWMNZ7.js +821 -0
- package/dist/block.tk.junction-ZUUBN36V.js +2362 -0
- package/dist/block.tk.junction.textmatrixui-PYJ4UGCF.js +197 -0
- package/dist/block.tk.ld-6E7ZXTCC.js +97 -0
- package/dist/block.tk.menu-SWT3R74J.js +1027 -0
- package/dist/block.tk.pgv-SEDDAV24.js +942 -0
- package/dist/brainImaging-X5WPNTUO.js +421 -0
- package/dist/chat-KZ3LZAQ6.js +148 -0
- package/dist/chunk-2LCTMDCS.js +20649 -0
- package/dist/chunk-2LCTMDCS.js.map +7 -0
- package/dist/chunk-2TMP56TB.js +386 -0
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- package/dist/chunk-4YG57UVZ.js +228 -0
- package/dist/chunk-54P7H5GL.js +1150 -0
- package/dist/chunk-5BBR2HND.js +158 -0
- package/dist/chunk-5BCACIPX.js +2784 -0
- package/dist/chunk-5OHXYXLD.js +46 -0
- package/dist/chunk-5OHXYXLD.js.map +7 -0
- package/dist/chunk-6CRWDKT7.js +289 -0
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- package/dist/chunk-BEWDIM6H.js.map +7 -0
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- package/dist/chunk-ZIAGMGMS.js +381 -0
- package/dist/chunk-ZXNBYIBD.js +129 -0
- package/dist/condition-RQP7JUST.js +330 -0
- package/dist/controls-WFT5GE3D.js +39 -0
- package/dist/controls.config-66ZKRSPU.js +37 -0
- package/dist/correlation-45MFH7X4.js +96 -0
- package/dist/cuminc-44ALCFL4.js +1147 -0
- package/dist/cuminc.integration.spec-I2UTPH3X.js +676 -0
- package/dist/customdata.inputui-PBA5LZRT.js +287 -0
- package/dist/dataDownload-CRGQTCOW.js +328 -0
- package/dist/dataDownload.integration.spec-7SAPXDH4.js +191 -0
- package/dist/databrowser.ui-O5TPKDPL.js +419 -0
- package/dist/dictionary-QGSAJ7FM.js +109 -0
- package/dist/dnaMethylation-4VDQBBGJ.js +36 -0
- package/dist/dnaMethylation.integration.spec-RSO5U6RN.js +165 -0
- package/dist/e2pca-7LPSASDI.js +348 -0
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- package/dist/expclust.gdc.spec-PSXJZCAI.js +305 -0
- package/dist/facet-W3RYRWXJ.js +519 -0
- package/dist/geneExpClustering-SBQWW6IZ.js +246 -0
- package/dist/geneExpression-4WEYCEZV.js +312 -0
- package/dist/geneExpression-JWYJNDN5.js +36 -0
- package/dist/geneExpression.unit.spec-HKD4DJIV.js +100 -0
- package/dist/geneORA-YUVDOZ5X.js +276 -0
- package/dist/geneVariant-J3UI6RWM.js +39 -0
- package/dist/geneVariant-ZB7CLFCT.js +37 -0
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- package/dist/geneset-242QGP5Q.js +194 -0
- package/dist/genomeBrowser.spec-NRLKLJQD.js +279 -0
- package/dist/grin2-FD3JTI5R.js +1554 -0
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- package/dist/gsea-YHG57UZ5.js +45 -0
- package/dist/hierCluster-QUAZ7NI6.js +62 -0
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- /package/dist/{regression.inputs.term-G57GL57T.js.map → regression.inputs.term-6FWVBNJT.js.map} +0 -0
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- /package/dist/{regression.results-3YNM6LLQ.js.map → regression.results-27XHC5GE.js.map} +0 -0
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- /package/dist/{sampleScatter.spec-MBJ4XNTX.js.map → sampleScatter.spec-TXZYLGM7.js.map} +0 -0
- /package/dist/{sampleView-IUR3ZEN7.js.map → sampleView-2WKGJUSX.js.map} +0 -0
- /package/dist/{samplelst-C2NBFGH6.js.map → samplelst-NJZOPYYJ.js.map} +0 -0
- /package/dist/{samplematrix-AOK2HHSB.js.map → samplematrix-ZXOLANI5.js.map} +0 -0
- /package/dist/{sc-XT3Z5XJI.js.map → sc-4IYYVV2I.js.map} +0 -0
- /package/dist/{scatter-SAHKZRFL.js.map → scatter-UBF4N6ON.js.map} +0 -0
- /package/dist/{scatter.integration.spec-6KRDNHHH.js.map → scatter.integration.spec-JNGJ4BU5.js.map} +0 -0
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- /package/dist/{snp-UP7WL7WG.js.map → snp-JNV3DX5W.js.map} +0 -0
- /package/dist/{snp.unit.spec-Y5NWQ442.js.map → snp.unit.spec-7KFVZUWR.js.map} +0 -0
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- /package/dist/{sunburst-VJJ3UVYC.js.map → sunburst-CYROEYTG.js.map} +0 -0
- /package/dist/{survival-2ZE3N62A.js.map → survival-5Y3DFIES.js.map} +0 -0
- /package/dist/{survival-ASCLKIII.js.map → survival-WCPGEHW5.js.map} +0 -0
- /package/dist/{svgraph-AYR2UPNK.js.map → svgraph-3T6XL7TR.js.map} +0 -0
- /package/dist/{svmr-MOMW5DNY.js.map → svmr-GUBPSOID.js.map} +0 -0
- /package/dist/{table-PQB6KCEY.js.map → table-NTS6ROT7.js.map} +0 -0
- /package/dist/{termCollection-OQMUUTW6.js.map → termCollection-EE72SAHN.js.map} +0 -0
- /package/dist/{termCollection-5AY2AWT4.js.map → termCollection-ZZXLZ3UE.js.map} +0 -0
- /package/dist/{termCollection.unit.spec-BUAXYIJK.js.map → termCollection.unit.spec-3CTEJRTX.js.map} +0 -0
- /package/dist/{tk-EJLFFA5H.js.map → tk-6FIXPXTM.js.map} +0 -0
- /package/dist/{tp.ui-WUW6A7KP.js.map → tp.ui-4ESL6SCH.js.map} +0 -0
- /package/dist/{tvs.density-HSVPDDGA.js.map → tvs.density-AQ5GD437.js.map} +0 -0
- /package/dist/{tvs.dt-MVJXQMNU.js.map → tvs.dt-G5FMPWPL.js.map} +0 -0
- /package/dist/{tvs.dtcnv.categorical-FIIDWVK7.js.map → tvs.dtcnv.categorical-EYQ6RTHD.js.map} +0 -0
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- /package/dist/{tvs.samplelst-VD2NFFFS.js.map → tvs.samplelst-XZK4BE3H.js.map} +0 -0
- /package/dist/{tvs.termCollection-IKE5Q74D.js.map → tvs.termCollection-ZAX57TN4.js.map} +0 -0
- /package/dist/{violin-DPMJLHQG.js.map → violin-YEMSGTYF.js.map} +0 -0
- /package/dist/{violin.integration.spec-A4PNR4ES.js.map → violin.integration.spec-TULH2DWL.js.map} +0 -0
- /package/dist/{violin.interactivity-TS4DYUE5.js.map → violin.interactivity-RX2CDFVC.js.map} +0 -0
- /package/dist/{violin.renderer-53L4PXUT.js.map → violin.renderer-OJJDZFMZ.js.map} +0 -0
- /package/dist/{vocabulary-4MPFHKYC.js.map → vocabulary-726CSMNM.js.map} +0 -0
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getCompInit
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select_default
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// plots/table.js
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var TdbTable = class _TdbTable {
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static type = "table";
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constructor(opts) {
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}
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async init() {
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const opts = this.opts;
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const controls = opts.controls ? null : opts.holder.append("div");
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const holder = opts.controls ? opts.holder : opts.holder.append("div");
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holder,
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controls: await controlsInit({
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})
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this.components.controls.on("downloadClick.table", this.download);
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}
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getState(appState, sub) {
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settings: {
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common: config.settings.common,
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table: config.settings.table
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}
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};
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}
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async main() {
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try {
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this.config = structuredClone(this.state.config);
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if (this.dom.header) this.dom.header.html(c.term.term.name + " vs " + c.term2.term.name);
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this.data = await this.app.vocabApi.getNestedChartSeriesData(reqOpts);
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getDataRequestOpts() {
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}
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processData(data) {
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const columns = data.refs.rows.map((key) => {
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})
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});
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return [columns, rows];
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}
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};
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function setInteractivity(self) {
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self.download = () => {
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if (!self.state || !self.state.isVisible) return;
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const data = [];
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self.dom.div.selectAll("tr").each(function() {
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const series = [];
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select_default(this).selectAll("th, td").each(function() {
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series.push(select_default(this).text());
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});
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});
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const matrix = data.map((row) => row.join(" ")).join("\n");
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document.body.appendChild(a);
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"click",
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function() {
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a.download = self.config.term.term.name + " table.txt";
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a.href = URL.createObjectURL(new Blob([matrix], { type: "text/tab-separated-values" }));
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document.body.removeChild(a);
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},
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false
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);
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};
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}
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function setRenderers(self) {
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self.render = function render(columns, rows) {
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self.dom.div.style("display", "inline-block").selectAll("*").remove();
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const table = self.dom.div.append("table").style("margin-right", "20px").style("border-spacing", "3px").style("border-collapse", "collapse").style("border", "1px solid black");
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const tr = table.append("tr").style("white-space", "normal").style("background-color", "#ececec");
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for (const value of columns) {
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const label = value.label;
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tr.append("th").text(label.length > 20 ? label.slice(0, 16) + "..." : label).attr("aria-label", label).style("border", "1px solid black").style("padding", "3px").style("text-align", "center").style("min-width", "80px").style("max-width", "150px").style("word-break", label.length > 12 ? "break-word" : "normal").style("vertical-align", "top");
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}
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const tr2 = table.append("tr").style("background-color", i++ % 2 == 0 ? "#fff" : "#ececec");
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tr2.append("th").text(t1v.label.length > 20 ? t1v.label.slice(0, 20) + "..." : t1v.label).attr("aria-label", t1v.label).style("border", "1px solid black").style("padding", "3px").style("word-break", t1v.label.length > 12 ? "break-all" : "normal");
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for (const t2label of column_keys) {
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const td = tr2.append("td").style("border", "1px solid black").style("padding", "3px 5px").style("text-align", "center");
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const v = t1v.lst.find((i2) => i2.label == t2label);
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td.html(v.value);
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}
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}
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tableInit
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mayHydrateDictTwLst,
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renderTable
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// termsetting/handlers/termCollection.ts
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var TermCollectionHandler = class extends HandlerBase {
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//main menu dom elements before drag and drop divs are added
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constructor(opts) {
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super(opts);
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this.dom = {};
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this.termsetting = opts.termsetting;
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this.tw = opts.termsetting.tw;
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this.dom.holder = opts.holder || this.termsetting.dom.tip.d;
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}
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async showEditMenu(div) {
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const self = this.termsetting;
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div.selectAll("*").remove();
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const termIds = self.vocabApi.termdbConfig.termCollections?.find((c) => c.name === self.term.name)?.termIds || [];
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const terms = [];
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const toBeHydrated = [];
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for (const id of termIds) {
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const term = self.term.termlst.find((t) => t.id === id);
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if (term) terms.push(term);
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else toBeHydrated.push({ id });
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}
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if (toBeHydrated.length) {
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await mayHydrateDictTwLst(toBeHydrated, self.vocabApi);
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terms.push(...toBeHydrated.map((tw) => tw.term));
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}
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const groupDiv = div.append("div");
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const noButtonCallback = (i, node) => {
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terms[i].checked = node.checked;
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};
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const callback = this.tw.term.memberType == "numeric" ? addNumericTable(self, groupDiv, terms, noButtonCallback) : addCategoricalTable(self, groupDiv, terms, noButtonCallback);
|
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div.append("div").append("div").style("float", "right").style("padding", "6px 20px").append("button").attr("class", "sjpp_apply_btn sja_filter_tag_btn").text("Apply").on("click", callback);
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}
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getPillStatus() {
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return this.tw.getStatus(this.termsetting.usecase);
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}
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// inherited from HanlderBase
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// getPillName(d: PillData) {}
|
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};
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function addNumericTable(self, div, terms, noButtonCallback) {
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const rows = [];
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for (const term of terms) {
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const checked = self.q.numerators?.find((tid) => tid === term.id) ? "checked" : "";
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rows.push([{ value: term.name }, { html: `<input type='checkbox' ${checked} />` }]);
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}
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const selectedRows = terms.map((term, index) => self.term.termlst.find((t) => t.id === term.id) ? index : -1).filter((index) => index !== -1);
|
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81
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+
const columns = [{ label: "VARIABLES" }, { label: "Use for sorting" }];
|
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renderTable({
|
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rows,
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columns,
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div,
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maxWidth: "30vw",
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maxHeight: "40vh",
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noButtonCallback,
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striped: false,
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showHeader: true,
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//false,
|
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selectedRows,
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columnButtons: void 0,
|
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//Leave until table.js is typed
|
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|
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buttons: void 0
|
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});
|
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return () => {
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const q = self.q;
|
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|
+
const trs = div.select("table").select("tbody").node().querySelectorAll("tr");
|
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|
+
self.term.termlst = terms.filter((_, i) => trs[i].querySelectorAll("td")[1].querySelector("input")?.checked);
|
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|
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q.numerators = terms.filter((term, i) => {
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const checked = trs[i].querySelectorAll("td")[1].querySelector("input")?.checked;
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return checked === true;
|
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|
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}).map((t) => t.id);
|
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|
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self.api.runCallback();
|
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|
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};
|
|
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|
+
}
|
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|
+
function addCategoricalTable(self, div, terms, noButtonCallback) {
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|
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const rows = [];
|
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110
|
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for (const term of terms) {
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|
+
rows.push([{ value: term.name }]);
|
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|
+
}
|
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113
|
+
const selectedRows = terms.map((term, index) => self.term.termlst.find((t) => t.id === term.id) ? index : -1).filter((index) => index !== -1);
|
|
114
|
+
const columns = [{ label: "VARIABLES" }];
|
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|
+
renderTable({
|
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|
+
rows,
|
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+
columns,
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|
+
div: div.append("div").style("margin-top", "10px"),
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|
+
maxWidth: "30vw",
|
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120
|
+
maxHeight: "40vh",
|
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|
+
noButtonCallback,
|
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|
+
striped: false,
|
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123
|
+
showHeader: true,
|
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124
|
+
//false,
|
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125
|
+
selectedRows,
|
|
126
|
+
columnButtons: void 0,
|
|
127
|
+
//Leave until table.js is typed
|
|
128
|
+
buttons: void 0
|
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129
|
+
});
|
|
130
|
+
const categoryDiv = div.append("div").style("margin-top", "15px");
|
|
131
|
+
const values = Object.assign({}, ...self.tw.term.termlst?.map((t) => t.values || {}) ?? []);
|
|
132
|
+
const categoryTable = categoryDiv.append("div");
|
|
133
|
+
const ckSource = self.tw.q.categoryKeys || self.tw.term.categoryKeys || [];
|
|
134
|
+
renderTable({
|
|
135
|
+
columns: [{ label: "CATEGORIES" }],
|
|
136
|
+
rows: ckSource.map((ck) => {
|
|
137
|
+
return [{ value: values[ck.key]?.label ?? ck.key, checked: ck.shown }];
|
|
138
|
+
}),
|
|
139
|
+
div: categoryTable,
|
|
140
|
+
maxWidth: "30vw",
|
|
141
|
+
maxHeight: "40vh",
|
|
142
|
+
noButtonCallback: () => {
|
|
143
|
+
},
|
|
144
|
+
// FIXME to supply a real callback
|
|
145
|
+
striped: false,
|
|
146
|
+
showHeader: true,
|
|
147
|
+
//false,
|
|
148
|
+
selectAll: true,
|
|
149
|
+
columnButtons: void 0,
|
|
150
|
+
//Leave until table.js is typed
|
|
151
|
+
buttons: void 0
|
|
152
|
+
});
|
|
153
|
+
return () => {
|
|
154
|
+
const trs = div.select("table").select("tbody").node().querySelectorAll("tr");
|
|
155
|
+
self.term.termlst = terms.filter((term, i) => {
|
|
156
|
+
const checked = trs[i].querySelectorAll("td")[1].querySelector("input")?.checked;
|
|
157
|
+
return checked === true;
|
|
158
|
+
});
|
|
159
|
+
const catTrs = categoryTable.select("table").select("tbody").node().querySelectorAll("tr");
|
|
160
|
+
self.q.categoryKeys = ckSource.map((ck, i) => {
|
|
161
|
+
const checked = catTrs[i].querySelectorAll("td")[1].querySelector("input")?.checked;
|
|
162
|
+
return { key: ck.key, shown: !!checked };
|
|
163
|
+
});
|
|
164
|
+
self.api.runCallback();
|
|
165
|
+
};
|
|
166
|
+
}
|
|
167
|
+
function fillTW(tw) {
|
|
168
|
+
if (!tw.type) tw.type = "termCollection";
|
|
169
|
+
if (!tw.q) tw.q = { mode: "continuous", type: "compositePercentage" };
|
|
170
|
+
else tw.q.mode = "continuous";
|
|
171
|
+
return tw;
|
|
172
|
+
}
|
|
173
|
+
export {
|
|
174
|
+
TermCollectionHandler,
|
|
175
|
+
fillTW
|
|
176
|
+
};
|
|
177
|
+
//# sourceMappingURL=termCollection-EE72SAHN.js.map
|
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
import {
|
|
2
|
+
SearchHandler
|
|
3
|
+
} from "./chunk-DET76M2J.js";
|
|
4
|
+
import "./chunk-2LCTMDCS.js";
|
|
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|
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import "./chunk-HJ6L54YS.js";
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|
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import "./chunk-E5JQ3PN6.js";
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|
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import "./chunk-RCYTUKAJ.js";
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import "./chunk-A6TQGNDQ.js";
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|
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import "./chunk-HYZG6OPC.js";
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import "./chunk-FN5XPUPH.js";
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import "./chunk-LSEFWW72.js";
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import "./chunk-5EF5U7MX.js";
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import "./chunk-IQIXGTQV.js";
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import "./chunk-UCLS2SVB.js";
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import "./chunk-MVTCBVSX.js";
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import "./chunk-F6V4AYWP.js";
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import "./chunk-5OHXYXLD.js";
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import "./chunk-DQC5FFGV.js";
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import "./chunk-JOT4WDJE.js";
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import "./chunk-OTCYJP7G.js";
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import "./chunk-GXINX3WK.js";
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import "./chunk-SOED2SLH.js";
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import "./chunk-XRVBHNCW.js";
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import "./chunk-BEWDIM6H.js";
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import "./chunk-IH7ILDJS.js";
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|
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import "./chunk-LOZEKOES.js";
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import "./chunk-TOU7EVFQ.js";
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import "./chunk-OAWQ6LOO.js";
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|
+
import "./chunk-SEEYV6P2.js";
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|
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import "./chunk-NDWTN4U5.js";
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31
|
+
import "./chunk-OMR2DT66.js";
|
|
32
|
+
import "./chunk-HFNDKYVF.js";
|
|
33
|
+
export {
|
|
34
|
+
SearchHandler
|
|
35
|
+
};
|
|
36
|
+
//# sourceMappingURL=termCollection-ZZXLZ3UE.js.map
|
|
@@ -0,0 +1,206 @@
|
|
|
1
|
+
import {
|
|
2
|
+
SearchHandler
|
|
3
|
+
} from "./chunk-DET76M2J.js";
|
|
4
|
+
import {
|
|
5
|
+
require_tape
|
|
6
|
+
} from "./chunk-QWOE5YTB.js";
|
|
7
|
+
import "./chunk-2LCTMDCS.js";
|
|
8
|
+
import "./chunk-HJ6L54YS.js";
|
|
9
|
+
import "./chunk-E5JQ3PN6.js";
|
|
10
|
+
import "./chunk-RCYTUKAJ.js";
|
|
11
|
+
import "./chunk-A6TQGNDQ.js";
|
|
12
|
+
import "./chunk-HYZG6OPC.js";
|
|
13
|
+
import "./chunk-FN5XPUPH.js";
|
|
14
|
+
import "./chunk-LSEFWW72.js";
|
|
15
|
+
import "./chunk-5EF5U7MX.js";
|
|
16
|
+
import "./chunk-IQIXGTQV.js";
|
|
17
|
+
import "./chunk-UCLS2SVB.js";
|
|
18
|
+
import "./chunk-MVTCBVSX.js";
|
|
19
|
+
import "./chunk-F6V4AYWP.js";
|
|
20
|
+
import "./chunk-5OHXYXLD.js";
|
|
21
|
+
import "./chunk-DQC5FFGV.js";
|
|
22
|
+
import "./chunk-JOT4WDJE.js";
|
|
23
|
+
import "./chunk-OTCYJP7G.js";
|
|
24
|
+
import "./chunk-GXINX3WK.js";
|
|
25
|
+
import "./chunk-SOED2SLH.js";
|
|
26
|
+
import "./chunk-XRVBHNCW.js";
|
|
27
|
+
import "./chunk-BEWDIM6H.js";
|
|
28
|
+
import "./chunk-IH7ILDJS.js";
|
|
29
|
+
import "./chunk-LOZEKOES.js";
|
|
30
|
+
import "./chunk-TOU7EVFQ.js";
|
|
31
|
+
import "./chunk-OAWQ6LOO.js";
|
|
32
|
+
import "./chunk-SEEYV6P2.js";
|
|
33
|
+
import {
|
|
34
|
+
select_default
|
|
35
|
+
} from "./chunk-NDWTN4U5.js";
|
|
36
|
+
import "./chunk-OMR2DT66.js";
|
|
37
|
+
import {
|
|
38
|
+
__toESM
|
|
39
|
+
} from "./chunk-HFNDKYVF.js";
|
|
40
|
+
|
|
41
|
+
// termdb/handlers/test/termCollection.unit.spec.ts
|
|
42
|
+
var import_tape = __toESM(require_tape(), 1);
|
|
43
|
+
function getHolder() {
|
|
44
|
+
return select_default("body").append("div");
|
|
45
|
+
}
|
|
46
|
+
function getTermCollectionDetails(overrides = {}) {
|
|
47
|
+
return {
|
|
48
|
+
name: "Test Collection",
|
|
49
|
+
type: "gene",
|
|
50
|
+
memberType: "gene",
|
|
51
|
+
termlst: [
|
|
52
|
+
{ id: "gene1", name: "TP53", values: { tissue: "Lung" } },
|
|
53
|
+
{ id: "gene2", name: "KRAS", values: { tissue: "Colon" } },
|
|
54
|
+
{ id: "gene3", name: "BRCA1", values: { tissue: "Breast" } }
|
|
55
|
+
],
|
|
56
|
+
categoryKeys: [
|
|
57
|
+
{ key: "tissue", shown: true },
|
|
58
|
+
{ key: "expression", shown: false }
|
|
59
|
+
],
|
|
60
|
+
propsByTermId: {
|
|
61
|
+
gene1: { color: "#FF0000" },
|
|
62
|
+
gene2: { color: "#00FF00" }
|
|
63
|
+
},
|
|
64
|
+
...overrides
|
|
65
|
+
};
|
|
66
|
+
}
|
|
67
|
+
(0, import_tape.default)("\n", function(test) {
|
|
68
|
+
test.comment("-***- termdb/handlers/termCollection -***-");
|
|
69
|
+
test.end();
|
|
70
|
+
});
|
|
71
|
+
(0, import_tape.default)("init() should render term list table with all terms from details.termlst", async (test) => {
|
|
72
|
+
const handler = new SearchHandler();
|
|
73
|
+
const holder = getHolder();
|
|
74
|
+
const details = getTermCollectionDetails();
|
|
75
|
+
await handler.init({
|
|
76
|
+
holder,
|
|
77
|
+
callback: () => {
|
|
78
|
+
},
|
|
79
|
+
app: {},
|
|
80
|
+
details
|
|
81
|
+
});
|
|
82
|
+
const table = holder.select("table");
|
|
83
|
+
test.ok(table.node(), "Should render a table");
|
|
84
|
+
const rows = table.selectAll("tbody tr");
|
|
85
|
+
test.equal(rows.size(), 3, "Should render three rows for three terms");
|
|
86
|
+
const rowTexts = rows.nodes().map((row) => row.textContent.trim());
|
|
87
|
+
test.ok(rowTexts[0].includes("TP53"), "First row should contain TP53");
|
|
88
|
+
test.ok(rowTexts[1].includes("KRAS"), "Second row should contain KRAS");
|
|
89
|
+
test.ok(rowTexts[2].includes("BRCA1"), "Third row should contain BRCA1");
|
|
90
|
+
if (test["_ok"]) holder.remove();
|
|
91
|
+
test.end();
|
|
92
|
+
});
|
|
93
|
+
(0, import_tape.default)("init() should render category table when details.categoryKeys is present", async (test) => {
|
|
94
|
+
const handler = new SearchHandler();
|
|
95
|
+
const holder = getHolder();
|
|
96
|
+
const details = getTermCollectionDetails();
|
|
97
|
+
await handler.init({
|
|
98
|
+
holder,
|
|
99
|
+
callback: () => {
|
|
100
|
+
},
|
|
101
|
+
app: {},
|
|
102
|
+
details
|
|
103
|
+
});
|
|
104
|
+
const tables = holder.selectAll("table");
|
|
105
|
+
test.equal(tables.size(), 2, "Should render two tables when categoryKeys is present");
|
|
106
|
+
const categoryTable = tables.nodes()[1];
|
|
107
|
+
const categoryRows = select_default(categoryTable).selectAll("tbody tr");
|
|
108
|
+
test.equal(categoryRows.size(), 2, "Should render two rows for two categories");
|
|
109
|
+
const categoryTexts = categoryRows.nodes().map((row) => row.textContent.trim());
|
|
110
|
+
test.ok(categoryTexts[0].includes("tissue"), "Should display tissue category key");
|
|
111
|
+
test.ok(categoryTexts[1].includes("expression"), "Should display expression category key");
|
|
112
|
+
if (test["_ok"]) holder.remove();
|
|
113
|
+
test.end();
|
|
114
|
+
});
|
|
115
|
+
(0, import_tape.default)("init() should call callback with selected terms, categoryKeys, and properties", async (test) => {
|
|
116
|
+
const handler = new SearchHandler();
|
|
117
|
+
const holder = getHolder();
|
|
118
|
+
const details = getTermCollectionDetails();
|
|
119
|
+
let callbackResult;
|
|
120
|
+
await handler.init({
|
|
121
|
+
holder,
|
|
122
|
+
callback: (result) => {
|
|
123
|
+
callbackResult = result;
|
|
124
|
+
},
|
|
125
|
+
app: {},
|
|
126
|
+
details
|
|
127
|
+
});
|
|
128
|
+
const termsTable = holder.selectAll("table").nodes()[0];
|
|
129
|
+
const checkboxes = termsTable.querySelectorAll('tbody input[type="checkbox"]');
|
|
130
|
+
checkboxes[0].checked = true;
|
|
131
|
+
checkboxes[1].checked = true;
|
|
132
|
+
checkboxes[2].checked = false;
|
|
133
|
+
const categoryTable = holder.selectAll("table").nodes()[1];
|
|
134
|
+
const categoryCheckboxes = categoryTable.querySelectorAll('tbody input[type="checkbox"]');
|
|
135
|
+
categoryCheckboxes[0].checked = true;
|
|
136
|
+
categoryCheckboxes[1].checked = false;
|
|
137
|
+
const selectBtn = holder.select("button.sjpp_apply_btn").node();
|
|
138
|
+
selectBtn.click();
|
|
139
|
+
test.equal(callbackResult?.type, "termCollection", "Should set type to termCollection");
|
|
140
|
+
test.equal(callbackResult?.name, "Test Collection", "Should pass collection name");
|
|
141
|
+
test.equal(callbackResult?.memberType, "gene", "Should pass memberType");
|
|
142
|
+
test.deepEqual(callbackResult?.termIds, ["gene1", "gene2"], "Should pass selected term IDs");
|
|
143
|
+
test.equal(callbackResult?.termlst.length, 2, "Should pass selected term list with correct length");
|
|
144
|
+
test.equal(callbackResult?.termlst[0].name, "TP53", "First selected term should be TP53");
|
|
145
|
+
test.equal(callbackResult?.termlst[1].name, "KRAS", "Second selected term should be KRAS");
|
|
146
|
+
test.deepEqual(
|
|
147
|
+
callbackResult?.categoryKeys,
|
|
148
|
+
[
|
|
149
|
+
{ key: "tissue", shown: true },
|
|
150
|
+
{ key: "expression", shown: false }
|
|
151
|
+
],
|
|
152
|
+
"Should pass updated categoryKeys with shown status"
|
|
153
|
+
);
|
|
154
|
+
test.deepEqual(
|
|
155
|
+
callbackResult?.propsByTermId,
|
|
156
|
+
{ gene1: { color: "#FF0000" }, gene2: { color: "#00FF00" } },
|
|
157
|
+
"Should pass propsByTermId for selected terms only"
|
|
158
|
+
);
|
|
159
|
+
if (test["_ok"]) holder.remove();
|
|
160
|
+
test.end();
|
|
161
|
+
});
|
|
162
|
+
(0, import_tape.default)("init() should not render category table when details.categoryKeys is missing", async (test) => {
|
|
163
|
+
const handler = new SearchHandler();
|
|
164
|
+
const holder = getHolder();
|
|
165
|
+
const details = getTermCollectionDetails({ categoryKeys: void 0 });
|
|
166
|
+
await handler.init({
|
|
167
|
+
holder,
|
|
168
|
+
callback: () => {
|
|
169
|
+
},
|
|
170
|
+
app: {},
|
|
171
|
+
details
|
|
172
|
+
});
|
|
173
|
+
const tables = holder.selectAll("table");
|
|
174
|
+
test.equal(tables.size(), 1, "Should render only one table when categoryKeys is missing");
|
|
175
|
+
if (test["_ok"]) holder.remove();
|
|
176
|
+
test.end();
|
|
177
|
+
});
|
|
178
|
+
(0, import_tape.default)("init() should show alert when no terms are selected", async (test) => {
|
|
179
|
+
const handler = new SearchHandler();
|
|
180
|
+
const holder = getHolder();
|
|
181
|
+
const details = getTermCollectionDetails();
|
|
182
|
+
let alertCalled = false;
|
|
183
|
+
const originalAlert = window.alert;
|
|
184
|
+
window.alert = () => {
|
|
185
|
+
alertCalled = true;
|
|
186
|
+
};
|
|
187
|
+
await handler.init({
|
|
188
|
+
holder,
|
|
189
|
+
callback: () => test.fail("Callback should not be called when no terms selected"),
|
|
190
|
+
app: {},
|
|
191
|
+
details
|
|
192
|
+
});
|
|
193
|
+
const termsTable = holder.selectAll("table").nodes()[0];
|
|
194
|
+
const checkboxes = termsTable.querySelectorAll('tbody input[type="checkbox"]');
|
|
195
|
+
for (const cb of checkboxes) {
|
|
196
|
+
;
|
|
197
|
+
cb.checked = false;
|
|
198
|
+
}
|
|
199
|
+
const selectBtn = holder.select("button.sjpp_apply_btn").node();
|
|
200
|
+
selectBtn.click();
|
|
201
|
+
test.ok(alertCalled, "Should show alert when no terms are selected");
|
|
202
|
+
window.alert = originalAlert;
|
|
203
|
+
if (test["_ok"]) holder.remove();
|
|
204
|
+
test.end();
|
|
205
|
+
});
|
|
206
|
+
//# sourceMappingURL=termCollection.unit.spec-3CTEJRTX.js.map
|
|
@@ -0,0 +1,44 @@
|
|
|
1
|
+
import {
|
|
2
|
+
loadTk,
|
|
3
|
+
rangequery_rglst
|
|
4
|
+
} from "./chunk-SR72NS4M.js";
|
|
5
|
+
import "./chunk-SKMFMGCD.js";
|
|
6
|
+
import "./chunk-JQIR2UG5.js";
|
|
7
|
+
import "./chunk-LO4WNMBO.js";
|
|
8
|
+
import "./chunk-V2OJLJSK.js";
|
|
9
|
+
import "./chunk-I2M62STM.js";
|
|
10
|
+
import "./chunk-DONWY7TP.js";
|
|
11
|
+
import "./chunk-2LCTMDCS.js";
|
|
12
|
+
import "./chunk-HJ6L54YS.js";
|
|
13
|
+
import "./chunk-E5JQ3PN6.js";
|
|
14
|
+
import "./chunk-RCYTUKAJ.js";
|
|
15
|
+
import "./chunk-A6TQGNDQ.js";
|
|
16
|
+
import "./chunk-HYZG6OPC.js";
|
|
17
|
+
import "./chunk-FN5XPUPH.js";
|
|
18
|
+
import "./chunk-LSEFWW72.js";
|
|
19
|
+
import "./chunk-5EF5U7MX.js";
|
|
20
|
+
import "./chunk-IQIXGTQV.js";
|
|
21
|
+
import "./chunk-UCLS2SVB.js";
|
|
22
|
+
import "./chunk-MVTCBVSX.js";
|
|
23
|
+
import "./chunk-F6V4AYWP.js";
|
|
24
|
+
import "./chunk-5OHXYXLD.js";
|
|
25
|
+
import "./chunk-DQC5FFGV.js";
|
|
26
|
+
import "./chunk-JOT4WDJE.js";
|
|
27
|
+
import "./chunk-OTCYJP7G.js";
|
|
28
|
+
import "./chunk-GXINX3WK.js";
|
|
29
|
+
import "./chunk-SOED2SLH.js";
|
|
30
|
+
import "./chunk-XRVBHNCW.js";
|
|
31
|
+
import "./chunk-BEWDIM6H.js";
|
|
32
|
+
import "./chunk-IH7ILDJS.js";
|
|
33
|
+
import "./chunk-LOZEKOES.js";
|
|
34
|
+
import "./chunk-TOU7EVFQ.js";
|
|
35
|
+
import "./chunk-OAWQ6LOO.js";
|
|
36
|
+
import "./chunk-SEEYV6P2.js";
|
|
37
|
+
import "./chunk-NDWTN4U5.js";
|
|
38
|
+
import "./chunk-OMR2DT66.js";
|
|
39
|
+
import "./chunk-HFNDKYVF.js";
|
|
40
|
+
export {
|
|
41
|
+
loadTk,
|
|
42
|
+
rangequery_rglst
|
|
43
|
+
};
|
|
44
|
+
//# sourceMappingURL=tk-6FIXPXTM.js.map
|