@sjcrh/proteinpaint-client 2.182.0 → 2.182.1

package/dist/chunk-HYZG6OPC.js

@@ -0,0 +1,467 @@
+import {
+  axisLeft,
+  axisTop
+} from "./chunk-LOZEKOES.js";
+import {
+  format,
+  linear,
+  log
+} from "./chunk-OAWQ6LOO.js";
+import {
+  select_default
+} from "./chunk-NDWTN4U5.js";
+
+// plots/bars.renderer.js
+var formatter = format("d");
+function barsRenderer(barsapp, holder) {
+  holder.selectAll("*").remove();
+  const hm = {}, computed = {};
+  const emptyObj = {};
+  let chart;
+  let chartTitle;
+  let svg, mainG, series, collabels, rowlabels;
+  let axisG, yAxis, yTitle, yLine, xAxis, xTitle, xLine;
+  let currCell, currRects, currRowTexts, currColTexts;
+  let defaults;
+  let currserieses = [];
+  let prevBox;
+  function main(_chart) {
+    let prevOrientation = hm.orientation;
+    chart = _chart;
+    Object.assign(hm, chart.settings);
+    hm.handlers = chart.handlers;
+    hm.cols = hm.cols.filter((colId) => hm.colLabels.find((d) => d.id == colId));
+    hm.rows = hm.rows?.filter((d) => !hm.exclude.rows.includes(d)) || [];
+    const nosvg = !svg;
+    if (nosvg) init(_chart);
+    const unadjustedColw = hm.colw;
+    currserieses = chart.visibleSerieses;
+    currserieses.map(setIds);
+    chart.serieses.map(setIds);
+    setDimensions();
+    _chart.name = hm.handlers.chart.title(chart);
+    chartTitle.style("width", hm.svgw + 100 + "px").style("font-size", "1.1em").style("margin-bottom", "24px").html(_chart.name);
+    if (nosvg) {
+      svg.attr("height", 0).attr("width", 0).style("opacity", 0);
+      mainG.attr("transform", "translate(" + hm.rowlabelw + ",0)");
+    }
+    const s = series.attr("transform", seriesGrpTransform).selectAll(".bars-cell-grp").data(currserieses, seriesBindKey);
+    s.exit().each(seriesExit);
+    s.each(seriesUpdate);
+    s.enter().append("g").each(seriesEnter);
+    const c = collabels.attr("transform", colLabelsTransform).style("opacity", prevOrientation != hm.orientation ? 1e-4 : 1).style("display", hm.orientation != "vertical" ? "none" : "").selectAll("g").data(hm.colLabels, (d) => d.id);
+    c.exit().remove();
+    c.each(updateColLabel);
+    c.enter().append("g").each(addColLabel);
+    const r = rowlabels.attr("transform", rowLabelsTransform).style("opacity", prevOrientation != hm.orientation ? 1e-4 : 1).style("display", hm.orientation != "horizontal" ? "none" : "").selectAll("g").data(hm.colLabels, (d) => d.id);
+    r.exit().remove();
+    r.each(updateRowLabel);
+    r.enter().append("g").each(addRowLabel);
+    currRects = series.selectAll("rect");
+    currColTexts = collabels.selectAll("text");
+    hm.delay = 0.35 * hm.duration;
+    renderAxes(hm, prevOrientation, chart.visibleTotal);
+    hm.colw = unadjustedColw;
+    if (prevOrientation != hm.orientation) {
+      const labels = hm.orientation == "vertical" ? collabels : rowlabels;
+      labels.transition().duration(1500).style("opacity", 1);
+    }
+    if (nosvg) {
+      svg.transition().duration(100).attr("height", 1).attr("width", 1).style("opacity", 1);
+    }
+    setTimeout(
+      () => {
+        const extraPad = 20;
+        const currBox = mainG.node().getBBox();
+        const bbox = !prevBox || currBox.width ? currBox : prevBox;
+        prevBox = bbox;
+        svg.transition().duration(currBox.width ? 100 : 0).attr("width", bbox.width + extraPad).attr("height", bbox.height + extraPad);
+        if (hm.orientation == "vertical") {
+          const cbox = collabels.node().getBBox();
+          const ytbox = yTitle.node().getBBox();
+          const xoffset = Math.max(-cbox.x, -ytbox.x, -bbox.x);
+          mainG.transition().duration(currBox.width ? 100 : 0).attr("transform", "translate(" + xoffset + "," + -extraPad + ")");
+        } else {
+          const rbox = rowlabels.node().getBBox();
+          const ytbox = yTitle.node().getBBox();
+          const xtbox = xTitle.node().getBBox();
+          mainG.transition().duration(currBox.width ? 100 : 0).attr("transform", "translate(" + Math.max(-rbox.x, -ytbox.x) + "," + -xtbox.y + ")");
+        }
+      },
+      nosvg ? 110 : 510
+    );
+  }
+  function init(_chart) {
+    defaults = {
+      geneonrow: hm.geneonrow,
+      nicenames: {},
+      colw: hm.geneonrow ? Math.min(15, Math.max(1, Math.floor(document.body.clientWidth * 0.7 / hm.cols.length))) : 20,
+      rowh: hm.geneonrow ? 20 : Math.min(18, Math.max(10, Math.floor(document.body.clientHeight * 0.7 / hm.rows.length))),
+      rowspace: hm.geneonrow ? 2 : hm.rows.length > 100 ? 0 : 1,
+      colspace: !hm.geneonrow ? 2 : hm.cols.length > 100 ? 0 : 1,
+      rowtick: 8,
+      coltick: 5,
+      rowlabtickspace: 4,
+      collabtickspace: 4,
+      collabelh: 150,
+      rowlabelw: 250,
+      rowheadleft: true,
+      colheadtop: false,
+      samplecount4gene: true,
+      samplecount4legend: false,
+      showgrid: true,
+      gridstroke: "#fff",
+      showEmptyCells: false,
+      cellbg: "#eeeeee",
+      fontsizeratio: 0.9,
+      rowlabelfontsizemax: 16,
+      collabelfontsizemax: 12,
+      crudefill: hm.colw <= 2,
+      duration: 1e3,
+      delay: 0
+    };
+    for (let key in defaults) {
+      if (!(key in hm) || key == "cols" || key == "rows") hm[key] = defaults[key];
+    }
+    if (!svg) {
+      chartTitle = holder.append("div").attr("class", "pp-chart-title").style("text-align", "center");
+      svg = holder.append("svg").attr("class", "pp-bars-svg").style("overflow", "visible").on("mouseover.tphm2", hm.handlers.svg.mouseover).on("mouseout.tphm2", hm.handlers.svg.mouseout).on("click.tphm2", hm.handlers.svg.click);
+      _chart.svg = svg;
+    }
+    mainG = svg.append("g").attr("class", "sjpcb-bars-mainG").attr("data-testid", "sjpcb-bars-mainG");
+    hm.h.svg = svg;
+    hm.h.mainG = mainG;
+    collabels = mainG.append("g").attr("class", "bars-collabels").style("cursor", hm.handlers.barLabel.click ? "pointer" : "").on("mouseover.tphm2", colLabelMouseover).on("mouseout.tphm2", colLabelMouseout).on("click.tphm2", hm.handlers.barLabel.click);
+    rowlabels = mainG.append("g").attr("class", "bars-rowlabels").attr("data-testid", "sjpcb-bars-rowlabels").style("cursor", hm.handlers.barLabel.click ? "pointer" : "").on("mouseover.tphm2", colLabelMouseover).on("mouseout.tphm2", colLabelMouseout).on("click.tphm2", hm.handlers.barLabel.click);
+    series = mainG.append("g").attr("class", "bars-series").attr("data-testid", "sjpcb-bars-series").on("mouseover.tphm2", seriesMouseOver).on("mouseout.tphm2", seriesMouseOut).on("click", seriesClick).style("cursor", "pointer");
+    axisG = mainG.append("g").attr("class", "sjpcb-bar-chart-axis-g");
+    yAxis = axisG.append("g").attr("class", "sjpcb-bar-chart-y-axis");
+    yLine = axisG.append("line").attr("class", "sjpcb-bar-chart-y-line").style("stroke", "#000");
+    yTitle = axisG.append("g").attr("class", "sjpcb-bar-chart-y-title").style("cursor", "default");
+    xAxis = axisG.append("g").attr("class", "sjpcb-bar-chart-x-axis");
+    xLine = axisG.append("line").attr("class", "sjpcb-bar-chart-x-line").style("stroke", "#000");
+    xTitle = axisG.append("g").attr("class", "sjpcb-bar-chart-x-title").style("cursor", "default");
+  }
+  function setDimensions() {
+    const maxChartsPerRow = hm.numCharts < 4 ? hm.numCharts : hm.numCharts % 3 == 0 ? 3 : 2;
+    const spacing = hm.cols.length * hm.colspace + (hm.colgrps.length - 1) * hm.colgspace + hm.rowlabelw + hm.rowgrplabelw;
+    if (hm.orientation == "horizontal") {
+      hm.svgw = hm.plotLength + hm.rowlabelw;
+      hm.rowh = Math.max(14, Math.min(22, 0.7 * window.innerHeight / hm.cols.length));
+      hm.svgh = hm.cols.length * (hm.rowh + hm.colspace) - hm.colspace + (hm.colgrps.length - 1) * hm.colgspace + hm.rowlabelw + hm.rowgrplabelw;
+    } else {
+      const maxSvgw = window.innerWidth * 0.92 / maxChartsPerRow;
+      hm.colw = Math.min(Math.max(16, Math.round((maxSvgw - spacing) / hm.cols.length)), 30);
+      hm.svgw = hm.cols.length * (hm.colw + hm.colspace) - hm.colspace + (hm.colgrps.length - 1) * hm.colgspace + hm.rowlabelw + hm.rowgrplabelw;
+      hm.svgh = hm.plotLength + hm.rowlabelw;
+    }
+    chart.svgh = hm.svgh;
+    hm.h.yScale = {};
+    hm.h.xScale = {};
+    hm.h.yPrevBySeries = {};
+    hm.h.xPrevBySeries = {};
+    const ratio = hm.scale == "byChart" ? 1 : chart.maxVisibleSeriesTotal / chart.maxVisibleAcrossCharts;
+    for (const series2 of currserieses) {
+      if (series2.visibleData[0]) {
+        const min = 0;
+        const max = hm.unit == "pct" ? series2.visibleTotal : hm.unit == "log" ? chart.maxSeriesLogTotal : chart.maxVisibleSeriesTotal;
+        hm.h.yScale[series2.seriesId] = linear().domain([min, max / ratio]).range([0, hm.svgh - hm.collabelh]);
+        hm.h.xScale[series2.seriesId] = linear().domain([min, max / ratio]).range([0, hm.svgw - hm.rowlabelw]);
+        hm.h.yPrevBySeries[series2.seriesId] = 0;
+        hm.h.xPrevBySeries[series2.seriesId] = 0;
+        for (const data of series2.visibleData) {
+          data.height = getRectHeight(data);
+          data.y = getRectY(data);
+          data.x = getRectX(data);
+          data.width = getRectWidth(data);
+        }
+      }
+    }
+    computed.colfontsize = Math.min(hm.colw * hm.fontsizeratio, hm.collabelfontsizemax);
+    computed.rowfontsize = Math.min(hm.rowh * hm.fontsizeratio, hm.rowlabelfontsizemax);
+    computed.rowtextyalign = Math.min(hm.rowh, (hm.rowh + computed.rowfontsize) / 2) + hm.rowspace;
+  }
+  function setIds(series2) {
+    if (!("seriesId" in series2)) {
+      series2.data.map((data) => {
+        if (data) series2.seriesId = data[hm.serieskey];
+      });
+    }
+    series2.data.map((d) => {
+      d.rowId = d[hm.rowkey];
+      d.colId = d[hm.colkey];
+    });
+  }
+  function seriesBindKey(series2) {
+    return series2.seriesId;
+  }
+  function cellKey(d) {
+    return d.rowId + " " + d.colId;
+  }
+  function seriesExit() {
+    select_default(this).remove();
+  }
+  function seriesUpdate(series2) {
+    const g = select_default(this).selectAll(".bars-cell").data(series2.data.filter(filterData), cellKey);
+    g.exit().each(function() {
+      select_default(this).remove();
+    });
+    g.style("display", (d) => {
+      return hm.cols.includes(d.colId) ? "block" : "none";
+    });
+    g.select("rect").datum((d) => d).transition().duration(hm.duration).attr("x", (d) => d.x).attr("y", (d) => d.y).attr("width", (d) => d.width).attr("height", (d) => d.height).attr("fill", hm.handlers.series.rectFill).attr("stroke", hm.handlers.series.strokeFill);
+    g.enter().append("g").each(addCell);
+    g.selectAll("text").remove();
+    addAsterisks(g);
+  }
+  function seriesEnter(series2) {
+    if (!series2 || !series2.data.length) return;
+    select_default(this).attr("class", "bars-cell-grp").selectAll("g").data(series2.data.filter(filterData), cellKey).enter().append("g").each(addCell);
+  }
+  function filterData(d) {
+    return hm.rows.includes(d.dataId);
+  }
+  function addCell(d) {
+    const g = select_default(this).attr("class", "bars-cell").datum(d);
+    g.style("display", (d2) => {
+      return hm.cols.includes(d2.colId) ? "block" : "none";
+    });
+    g.append("rect").attr("x", (d2) => d2.x).attr("y", (d2) => d2.y).attr("width", (d2) => d2.width).attr("height", (d2) => d2.height).attr("fill", hm.handlers.series.rectFill).attr("stroke", hm.handlers.series.strokeFill).attr("shape-rendering", "crispEdges").style("opacity", 0).transition().delay(hm.delay).duration(hm.duration).style("opacity", 1);
+    addPercent(g, d);
+    addAsterisks(g);
+  }
+  function addPercent(g, d) {
+    if (!barsapp.config.term2 && barsapp.config.settings.barchart.showPercent) {
+      const x = hm.orientation == "horizontal" ? d.x + d.width + 8 : d.x + 4;
+      const y = hm.orientation == "horizontal" ? d.y + d.height * 0.7 : d.y - 4;
+      const percent = d.seriesTotal / d.chartTotal * 100;
+      g.append("g").attr("transform", `translate(${x}, ${y})`).append("text").style("font-size", "0.8em").text(`${percent.toFixed(0)}%`);
+    }
+  }
+  function addAsterisks(g) {
+    if (!barsapp.config.settings.barchart.asterisksVisible) {
+      return;
+    }
+    g.append("text").text((d) => {
+      const test = d.groupPvalues && d.groupPvalues.term2tests.find((x) => x.term2id == d.dataId);
+      if (!test || test.skipped) return "";
+      if (barsapp.config.settings.barchart.multiTestingCorr) {
+        return test.adjusted_p_value < 0.05 ? "*" : "";
+      } else return test.pvalue < 0.05 ? "*" : "";
+    }).attr("x", (d) => d.x + d.width / 2).attr("y", (d) => d.y + d.height / 2).attr("dy", "0.6em").style("text-anchor", "middle").style("opacity", 0).transition().delay(hm.delay).duration(hm.duration).style("opacity", 1);
+  }
+  function seriesGrpTransform() {
+    const x = hm.colspace;
+    let y = hm.colheadtop ? hm.collabelh : hm.colgrplabelh;
+    if (hm.legendontop) y += hm.legendh;
+    return "translate(" + x + "," + y + ")";
+  }
+  function getRectHeight(d) {
+    const total = hm.unit == "log" ? d.logTotal : d.total;
+    const height = hm.orientation == "vertical" ? hm.h.yScale[d.seriesId](total) : hm.rowh;
+    const rowspace = 0;
+    hm.h.yPrevBySeries[d.seriesId] += height + rowspace;
+    return Math.max(1, height - rowspace);
+  }
+  function getRectY(d) {
+    const grpoffset = hm.colgrps.indexOf(d[hm.colgrpkey]) * hm.colgspace;
+    const h = hm.unit == "log" ? Math.max(0, hm.h.yPrevBySeries[d.seriesId]) : hm.h.yPrevBySeries[d.seriesId];
+    return hm.orientation == "vertical" ? hm.svgh - hm.collabelh - h : hm.cols.indexOf(d.colId) * (hm.rowh + hm.rowspace) + grpoffset;
+  }
+  function getRectWidth(d) {
+    const total = hm.unit == "log" ? d.logTotal : d.total;
+    const width = hm.orientation == "vertical" ? hm.colw : hm.h.xScale[d.seriesId](total);
+    const colspace = 0;
+    hm.h.xPrevBySeries[d.seriesId] += Math.max(1, width + colspace);
+    return Math.max(1, width - colspace);
+  }
+  function getRectX(d) {
+    const grpoffset = hm.colgrps.indexOf(d[hm.colgrpkey]) * hm.colgspace;
+    return hm.orientation == "vertical" ? hm.cols.indexOf(d.colId) * (hm.colw + hm.colspace) + grpoffset : hm.h.xPrevBySeries[d.seriesId];
+  }
+  function colLabelsTransform() {
+    let x = 5 + hm.colspace;
+    let y = hm.colheadtop ? (
+      /*hm.collabelh -*/
+      hm.borderwidth + 1
+    ) : hm.svgh - hm.collabelh + 25;
+    if (hm.legendontop) y += hm.legendh;
+    return "translate(" + x + "," + y + ")";
+  }
+  function colLabelTransform(d) {
+    const grp = hm.col2name[d] ? hm.col2name[d].grp : "";
+    const x = hm.colgrps.indexOf(grp) * hm.colgspace + hm.cols.indexOf("id" in d ? d.id : d) * (hm.colw + hm.colspace) + hm.colw / 2;
+    const y = hm.colheadtop ? -1 * (hm.coltick + hm.collabtickspace) : hm.coltick + hm.collabtickspace;
+    return "translate(" + x + "," + y + ")";
+  }
+  function addColLabel(d) {
+    if (!this || d === void 0) return;
+    const g = select_default(this).attr("transform", colLabelTransform).style("opacity", 0);
+    g.append("text").attr("transform", "rotate(-40)").attr("y", 2).attr("text-anchor", "end").attr("font-size", computed.colfontsize + "px").html(hm.handlers.barLabel.text);
+    g.transition().delay(hm.delay).duration(hm.duration).style("opacity", 1);
+  }
+  function updateColLabel(d) {
+    const g = select_default(this).datum(d);
+    g.attr("transform", colLabelTransform);
+    g.selectAll("text").datum(d).attr("y", 2).attr("text-anchor", "end").attr("font-size", computed.colfontsize + "px").html(hm.handlers.barLabel.text);
+  }
+  function rowLabelsTransform() {
+    const y = hm.colheadtop ? hm.collabelh : hm.colgrplabelh;
+    const x = hm.rowheadleft ? (
+      /*hm.collabelh -*/
+      hm.borderwidth + 1
+    ) : hm.svgw - hm.rowlabelw + 20;
+    return "translate(" + x + "," + y + ")";
+  }
+  function rowLabelTransform(d) {
+    const grp = hm.row2name[d] ? hm.row2name[d].grp : "";
+    const y = hm.colgrps.indexOf(grp) * hm.rowgspace + hm.cols.indexOf("id" in d ? d.id : d) * (hm.rowh + hm.rowspace) + computed.rowtextyalign;
+    const x = hm.rowheadleft ? -1 * (hm.rowtick + hm.rowlabtickspace) : hm.rowtick + hm.rowlabtickspace;
+    return "translate(" + x + "," + y + ")";
+  }
+  function addRowLabel(d) {
+    if (!this || d === void 0) return;
+    const g = select_default(this).attr("transform", rowLabelTransform).style("opacity", 0);
+    g.append("text").attr("x", 2).attr("text-anchor", "end").attr("font-size", computed.rowfontsize + "px").html(hm.handlers.barLabel.text);
+    g.transition().delay(hm.delay).duration(hm.duration).style("opacity", 1);
+  }
+  function updateRowLabel(d) {
+    const g = select_default(this).datum(d);
+    g.attr("transform", rowLabelTransform);
+    g.selectAll("text").datum(d).attr("x", 2).attr("text-anchor", "end").attr("font-size", computed.rowfontsize + "px").html(hm.handlers.barLabel.text);
+  }
+  function rowTextWeight(d) {
+    return d == currCell.rowId ? 700 : "";
+  }
+  function rowTextSize(d) {
+    return d == currCell.rowId ? Math.max(12, computed.rowfontsize) : computed.rowfontsize;
+  }
+  function rowTextColor(d) {
+    return d == currCell.rowId ? "#00f" : "";
+  }
+  function colTextWeight(d) {
+    return d == currCell.colId ? 700 : "";
+  }
+  function colTextSize(d) {
+    return d == currCell.colId ? 12 : computed.colfontsize;
+  }
+  function colTextColor(d) {
+    return d == currCell.colId ? "#00f" : "";
+  }
+  function renderAxes(hm2, prevOrientation, visibleTotal) {
+    axisG.style("opacity", prevOrientation != hm2.orientation ? 0 : 1).transition().duration(1500).style("opacity", 1);
+    if (hm2.orientation == "vertical") {
+      renderAxesOnVertical(hm2, visibleTotal);
+    } else {
+      renderAxesOnHorizontal(hm2, visibleTotal);
+    }
+  }
+  function renderAxesOnVertical(s, visibleTotal) {
+    xAxis.style("display", "none");
+    yLine.style("display", "none");
+    const colLabelBox = collabels.node().getBBox();
+    xTitle.selectAll("*").remove();
+    const xLabel = hm.handlers.xAxis.text(visibleTotal);
+    xTitle.append("text").style("text-anchor", "middle").style("font-size", s.axisTitleFontSize + "px").style("font-weight", 600).text(xLabel);
+    setTimeout(() => {
+      xTitle.attr(
+        "transform",
+        "translate(" + (s.svgw - s.svgPadding.left - s.svgPadding.right - s.rowlabelw) / 2 + "," + (colLabelBox.height + hm.svgh - hm.collabelh + 20 + s.axisTitleFontSize) + ")"
+      );
+    }, 0);
+    const range = [s.colgrplabelh, s.svgh - s.collabelh + s.colgrplabelh - s.borderwidth + 1];
+    yAxis.style("display", "block").call(getAxisScale(axisLeft, range, true));
+    yTitle.selectAll("*").remove();
+    const h = s.svgh - s.collabelh;
+    yTitle.style("font-weight", 600).attr("transform", "translate(" + (-s.svgPadding.left - s.axisTitleFontSize) + "," + h / 2 + ")rotate(-90)").append("text").style("text-anchor", "middle").style("font-size", s.axisTitleFontSize + "px").attr("data-testid", "sjpp-massbarchart-vertical-charttitle").text(hm.handlers.yAxis.text(visibleTotal));
+  }
+  function renderAxesOnHorizontal(s, visibleTotal) {
+    yAxis.style("display", "none");
+    xLine.style("display", "none");
+    yTitle.selectAll("*").remove();
+    const yLabel = hm.handlers.yAxis.text(visibleTotal);
+    yTitle.append("text").style("text-anchor", "end").style("font-size", s.axisTitleFontSize + "px").style("font-weight", 600).text(yLabel);
+    setTimeout(() => {
+      yTitle.style("text-anchor", "end").attr(
+        "transform",
+        "translate(0,0)"
+      );
+    }, 0);
+    const range = [0, s.svgw - s.rowlabelw];
+    let y = s.colheadtop ? s.collabelh - 2 : s.colgrplabelh - 2;
+    if (s.legendontop) y += s.legendh;
+    xAxis.style("display", "block").attr("transform", "translate(2.5," + y + ")").call(getAxisScale(axisTop, range));
+    xTitle.selectAll("*").remove();
+    const w = s.svgw - s.rowlabelw;
+    xTitle.attr("transform", "translate(" + w / 2 + ",0)").append("text").style("text-anchor", "middle").style("font-size", s.axisTitleFontSize + "px").style("font-weight", 600).attr("data-testid", "sjpp-massbarchart-horizontal-charttitle").text(hm.handlers.xAxis.text(visibleTotal));
+  }
+  function getAxisScale(axisGenerator, range, reverseDomain = false) {
+    const ratio = hm.scale == "byChart" || hm.clickedAge ? 1 : chart.maxVisibleSeriesTotal / chart.maxVisibleAcrossCharts;
+    const min = hm.unit == "log" ? 1 : 0;
+    const max = hm.unit == "pct" ? 100 : chart.maxVisibleSeriesTotal;
+    const domain = [min, max / ratio];
+    if (reverseDomain) domain.reverse();
+    const scale = hm.unit == "log" ? log() : linear();
+    scale.domain(domain).range(range);
+    const tickFormatter = hm.unit == "log" ? (v) => formatter(Math.pow(10, v)) : formatter;
+    if (hm.unit == "log") {
+      const values = [1];
+      for (let i = 1; i < Math.log10(max); i++) {
+        values.push(Math.pow(10, i));
+      }
+      return axisGenerator(scale).tickValues(values).tickFormat(formatter);
+    } else {
+      return axisGenerator(scale).ticks(5).tickFormat(formatter);
+    }
+  }
+  function seriesMouseOver(event) {
+    const t = event.target.tagName == "tspan" ? event.target.parentNode : event.target;
+    const d = t.__data__;
+    if (d && (t.tagName == "rect" || t.nodeName == "text")) {
+      currCell = d;
+      currColTexts.attr("font-weight", colTextWeight).attr("font-size", colTextSize).style("fill", colTextColor);
+    } else {
+      currCell = emptyObj;
+      currRowTexts.attr("font-weight", rowTextWeight).attr("font-size", rowTextSize).style("fill", rowTextColor);
+      currColTexts.attr("font-weight", colTextWeight).attr("font-size", colTextSize).style("fill", colTextColor);
+    }
+    hm.handlers.series.mouseover(event, d);
+  }
+  function seriesMouseOut(event) {
+    event.stopPropagation();
+    currColTexts.attr("font-weight", "").attr("font-size", computed.colfontsize).style("fill", "");
+    currCell = emptyObj;
+    if (hm.handlers.series.mouseout) hm.handlers.series.mouseout(event);
+  }
+  function colLabelMouseover(event) {
+    const d = event.target.__data__;
+    if (!d) return;
+    const r = hm.col2name["id" in d ? d.id : d];
+    const cell = { colId: r.name };
+    cell[hm.colkey] = r.name;
+    cell[hm.colgrpkey] = r.grp;
+    if (hm.handlers.barLabel.mouseover) hm.handlers.barLabel.mouseover(event);
+  }
+  function colLabelMouseout(event) {
+    currCell = emptyObj;
+    if (hm.handlers.barLabel.mouseout) hm.handlers.barLabel.mouseout(event);
+  }
+  function seriesClick(event) {
+    const d = event.target.__data__;
+    barsapp.handlers.series.click(event, d);
+  }
+  main.hm = hm;
+  main.styles = () => {
+    const styles = {};
+    for (const key in defaults) {
+      styles[key] = hm[key];
+    }
+    return styles;
+  };
+  return main;
+}
+
+export {
+  barsRenderer
+};
+//# sourceMappingURL=chunk-HYZG6OPC.js.map

package/dist/chunk-HYZG6OPC.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/bars.renderer.js"],
+  "sourcesContent": ["import { select } from 'd3-selection'\nimport { scaleLinear, scaleLog } from 'd3-scale'\nimport { axisLeft, axisTop } from 'd3-axis'\nimport { format } from 'd3-format'\n\n/*\narguments: \n  - holder: d3-selected DOM element\n\nreturns: \n  a bar chart renderer (main) function with the following argument \n  {\n    // *** COMPUTED AGGREGATES ***\n    maxAcrossCharts: number,   \n    charts: [{\n      chartId: string | number,\n      total: number,\n      maxSeriesTotal: number,\n      serieses: [{\n        seriesId: string | number,\n        total: number,\n        data: [{\n          dataId: string | number,\n          total: \"+1\"\n        }]\n      },\n\n      // *** RENDERER SETTINGS ***\n      // will extend instance settings\n      // partial example below, see\n      // bar.settings for a full example,\n      // reuses config keys from tp.schema\n      settings: {\n        cols: [$seriesId],\n        colgrps: [col2name.$seriesId.grp], \n        rows: [$dataId],\n        rowgrps: [row2name.$seriesId.grp], // for clustering bars\n        col2name: {\n          $seriesId: {\n            name: $seriesId,\n            grp: string | number\n          }\n        },\n        row2name: {\n          $dataId: {\n            name: $dataId,\n            grp: string | number\n          }\n        }\n      },\n\n      // *** EVENT CALLBACK FUNCTIONS ***\n      // for optional user interactivity\n      // see bars.app.js for example event handlers\n      // event handlers are passed the data as bound\n      // to the element by d3.data([...], bindkey)\n      handlers: {\n        svg: {\n          mouseover(),\n          mouseout()\n        },\n        series: {\n          mouseover(),\n          mouseout(),\n          rectFill()\n        },\n        barLabel: {\n          text: d => d,\n          mouseover(d) {},\n          mouseout()\n        },\n        legend: {\n          text(),\n          mouseover(),\n          mouseout(),\n          click(),\n        },\n        yAxis: {\n          text()\n        },\n        xAxis: {\n          text()\n        }\n      }\n    }]\n  }\n*/\n\nconst formatter = format('d')\n\nexport default function barsRenderer(barsapp, holder) {\n\tholder.selectAll('*').remove() // clear holder\n\tconst hm = {},\n\t\tcomputed = {}\n\tconst emptyObj = {} //used to represent any empty cell\n\tlet chart\n\tlet chartTitle\n\tlet svg, mainG, series, collabels, rowlabels\n\tlet axisG, yAxis, yTitle, yLine, xAxis, xTitle, xLine\n\tlet currCell, currRects, currRowTexts, currColTexts\n\tlet defaults //will have key values in init\n\tlet currserieses = []\n\tlet prevBox\n\n\tfunction main(_chart) {\n\t\tlet prevOrientation = hm.orientation\n\t\tchart = _chart\n\t\tObject.assign(hm, chart.settings)\n\t\thm.handlers = chart.handlers\n\t\thm.cols = hm.cols.filter(colId => hm.colLabels.find(d => d.id == colId))\n\t\thm.rows = hm.rows?.filter(d => !hm.exclude.rows.includes(d)) || []\n\t\tconst nosvg = !svg\n\t\tif (nosvg) init(_chart)\n\t\tconst unadjustedColw = hm.colw\n\t\tcurrserieses = chart.visibleSerieses\n\t\tcurrserieses.map(setIds)\n\t\tchart.serieses.map(setIds)\n\t\tsetDimensions()\n\t\t_chart.name = hm.handlers.chart.title(chart)\n\t\tchartTitle\n\t\t\t.style('width', hm.svgw + 100 + 'px')\n\t\t\t//.style('font-weight', 600)\n\t\t\t.style('font-size', '1.1em')\n\t\t\t.style('margin-bottom', '24px')\n\t\t\t.html(_chart.name)\n\n\t\t// only set this initially to prevent\n\t\t// jerky svg resize on update\n\t\tif (nosvg) {\n\t\t\tsvg.attr('height', 0).attr('width', 0).style('opacity', 0)\n\t\t\tmainG.attr('transform', 'translate(' + hm.rowlabelw + ',0)')\n\t\t}\n\n\t\tconst s = series.attr('transform', seriesGrpTransform).selectAll('.bars-cell-grp').data(currserieses, seriesBindKey)\n\t\ts.exit().each(seriesExit)\n\t\ts.each(seriesUpdate)\n\t\ts.enter().append('g').each(seriesEnter)\n\n\t\tconst c = collabels\n\t\t\t.attr('transform', colLabelsTransform)\n\t\t\t.style('opacity', prevOrientation != hm.orientation ? 0.0001 : 1)\n\t\t\t.style('display', hm.orientation != 'vertical' ? 'none' : '')\n\t\t\t.selectAll('g')\n\t\t\t.data(hm.colLabels, d => d.id)\n\t\tc.exit().remove()\n\t\tc.each(updateColLabel)\n\t\tc.enter().append('g').each(addColLabel)\n\n\t\tconst r = rowlabels\n\t\t\t.attr('transform', rowLabelsTransform)\n\t\t\t.style('opacity', prevOrientation != hm.orientation ? 0.0001 : 1)\n\t\t\t.style('display', hm.orientation != 'horizontal' ? 'none' : '')\n\t\t\t.selectAll('g')\n\t\t\t.data(hm.colLabels, d => d.id)\n\t\tr.exit().remove()\n\t\tr.each(updateRowLabel)\n\t\tr.enter().append('g').each(addRowLabel)\n\n\t\tcurrRects = series.selectAll('rect')\n\t\tcurrColTexts = collabels.selectAll('text')\n\t\thm.delay = 0.35 * hm.duration\n\t\trenderAxes(hm, prevOrientation, chart.visibleTotal)\n\t\thm.colw = unadjustedColw\n\n\t\tif (prevOrientation != hm.orientation) {\n\t\t\tconst labels = hm.orientation == 'vertical' ? collabels : rowlabels\n\t\t\tlabels.transition().duration(1500).style('opacity', 1)\n\t\t}\n\t\tif (nosvg) {\n\t\t\tsvg.transition().duration(100).attr('height', 1).attr('width', 1).style('opacity', 1)\n\t\t}\n\n\t\tsetTimeout(\n\t\t\t() => {\n\t\t\t\tconst extraPad = 20 // hardcode\n\t\t\t\tconst currBox = mainG.node().getBBox()\n\t\t\t\tconst bbox = !prevBox || currBox.width ? currBox : prevBox\n\t\t\t\tprevBox = bbox\n\t\t\t\tsvg\n\t\t\t\t\t.transition()\n\t\t\t\t\t.duration(currBox.width ? 100 : 0)\n\t\t\t\t\t.attr('width', bbox.width + extraPad)\n\t\t\t\t\t.attr('height', bbox.height + extraPad)\n\n\t\t\t\tif (hm.orientation == 'vertical') {\n\t\t\t\t\tconst cbox = collabels.node().getBBox()\n\t\t\t\t\tconst ytbox = yTitle.node().getBBox()\n\t\t\t\t\tconst xoffset = Math.max(-cbox.x, -ytbox.x, -bbox.x)\n\t\t\t\t\tmainG\n\t\t\t\t\t\t.transition()\n\t\t\t\t\t\t.duration(currBox.width ? 100 : 0)\n\t\t\t\t\t\t.attr('transform', 'translate(' + xoffset + ',' + -extraPad + ')')\n\t\t\t\t} else {\n\t\t\t\t\tconst rbox = rowlabels.node().getBBox()\n\t\t\t\t\tconst ytbox = yTitle.node().getBBox()\n\t\t\t\t\tconst xtbox = xTitle.node().getBBox()\n\t\t\t\t\tmainG\n\t\t\t\t\t\t.transition()\n\t\t\t\t\t\t.duration(currBox.width ? 100 : 0)\n\t\t\t\t\t\t.attr('transform', 'translate(' + Math.max(-rbox.x, -ytbox.x) + ',' + -xtbox.y + ')')\n\t\t\t\t}\n\t\t\t},\n\t\t\tnosvg ? 110 : 510\n\t\t)\n\t}\n\n\tfunction init(_chart) {\n\t\tdefaults = {\n\t\t\tgeneonrow: hm.geneonrow,\n\t\t\tnicenames: {},\n\n\t\t\tcolw: hm.geneonrow\n\t\t\t\t? Math.min(15, Math.max(1, Math.floor((document.body.clientWidth * 0.7) / hm.cols.length)))\n\t\t\t\t: 20,\n\t\t\trowh: hm.geneonrow\n\t\t\t\t? 20\n\t\t\t\t: Math.min(18, Math.max(10, Math.floor((document.body.clientHeight * 0.7) / hm.rows.length))),\n\n\t\t\trowspace: hm.geneonrow ? 2 : hm.rows.length > 100 ? 0 : 1,\n\t\t\tcolspace: !hm.geneonrow ? 2 : hm.cols.length > 100 ? 0 : 1,\n\n\t\t\trowtick: 8,\n\t\t\tcoltick: 5,\n\t\t\trowlabtickspace: 4,\n\t\t\tcollabtickspace: 4,\n\t\t\tcollabelh: 150,\n\t\t\trowlabelw: 250,\n\t\t\trowheadleft: true,\n\t\t\tcolheadtop: false,\n\n\t\t\tsamplecount4gene: true,\n\t\t\tsamplecount4legend: false,\n\n\t\t\tshowgrid: true,\n\t\t\tgridstroke: '#fff',\n\t\t\tshowEmptyCells: false,\n\n\t\t\tcellbg: '#eeeeee',\n\n\t\t\tfontsizeratio: 0.9,\n\t\t\trowlabelfontsizemax: 16,\n\t\t\tcollabelfontsizemax: 12,\n\t\t\tcrudefill: hm.colw <= 2,\n\t\t\tduration: 1000,\n\t\t\tdelay: 0\n\t\t}\n\n\t\tfor (let key in defaults) {\n\t\t\tif (!(key in hm) || key == 'cols' || key == 'rows') hm[key] = defaults[key]\n\t\t}\n\n\t\tif (!svg) {\n\t\t\tchartTitle = holder.append('div').attr('class', 'pp-chart-title').style('text-align', 'center')\n\n\t\t\tsvg = holder\n\t\t\t\t.append('svg')\n\t\t\t\t.attr('class', 'pp-bars-svg')\n\t\t\t\t.style('overflow', 'visible')\n\t\t\t\t.on('mouseover.tphm2', hm.handlers.svg.mouseover)\n\t\t\t\t.on('mouseout.tphm2', hm.handlers.svg.mouseout)\n\t\t\t\t.on('click.tphm2', hm.handlers.svg.click)\n\t\t\t_chart.svg = svg\n\t\t}\n\n\t\tmainG = svg.append('g').attr('class', 'sjpcb-bars-mainG').attr('data-testid', 'sjpcb-bars-mainG')\n\t\thm.h.svg = svg\n\t\thm.h.mainG = mainG\n\n\t\tcollabels = mainG\n\t\t\t.append('g')\n\t\t\t.attr('class', 'bars-collabels')\n\t\t\t.style('cursor', hm.handlers.barLabel.click ? 'pointer' : '')\n\t\t\t.on('mouseover.tphm2', colLabelMouseover)\n\t\t\t.on('mouseout.tphm2', colLabelMouseout)\n\t\t\t.on('click.tphm2', hm.handlers.barLabel.click)\n\n\t\trowlabels = mainG\n\t\t\t.append('g')\n\t\t\t.attr('class', 'bars-rowlabels')\n\t\t\t.attr('data-testid', 'sjpcb-bars-rowlabels')\n\t\t\t.style('cursor', hm.handlers.barLabel.click ? 'pointer' : '')\n\t\t\t.on('mouseover.tphm2', colLabelMouseover)\n\t\t\t.on('mouseout.tphm2', colLabelMouseout)\n\t\t\t.on('click.tphm2', hm.handlers.barLabel.click)\n\n\t\tseries = mainG\n\t\t\t.append('g')\n\t\t\t.attr('class', 'bars-series')\n\t\t\t.attr('data-testid', 'sjpcb-bars-series')\n\t\t\t.on('mouseover.tphm2', seriesMouseOver)\n\t\t\t.on('mouseout.tphm2', seriesMouseOut)\n\t\t\t.on('click', seriesClick)\n\t\t\t.style('cursor', 'pointer')\n\n\t\taxisG = mainG.append('g').attr('class', 'sjpcb-bar-chart-axis-g')\n\t\tyAxis = axisG.append('g').attr('class', 'sjpcb-bar-chart-y-axis')\n\t\tyLine = axisG.append('line').attr('class', 'sjpcb-bar-chart-y-line').style('stroke', '#000')\n\t\tyTitle = axisG.append('g').attr('class', 'sjpcb-bar-chart-y-title').style('cursor', 'default')\n\t\txAxis = axisG.append('g').attr('class', 'sjpcb-bar-chart-x-axis')\n\t\txLine = axisG.append('line').attr('class', 'sjpcb-bar-chart-x-line').style('stroke', '#000')\n\t\txTitle = axisG.append('g').attr('class', 'sjpcb-bar-chart-x-title').style('cursor', 'default')\n\t}\n\n\tfunction setDimensions() {\n\t\tconst maxChartsPerRow = hm.numCharts < 4 ? hm.numCharts : hm.numCharts % 3 == 0 ? 3 : 2\n\t\tconst spacing =\n\t\t\thm.cols.length * hm.colspace + (hm.colgrps.length - 1) * hm.colgspace + hm.rowlabelw + hm.rowgrplabelw\n\t\tif (hm.orientation == 'horizontal') {\n\t\t\t/** This is the previous implementation to calculate the width\n\t\t\t * when plot is horizontal. New default and user input for plot length\n\t\t\t * is used now. Delete later if no issues arise. */\n\t\t\t// hm.svgw = Math.min(400, (0.92 * window.innerWidth) / maxChartsPerRow)\n\t\t\thm.svgw = hm.plotLength + hm.rowlabelw\n\t\t\thm.rowh = Math.max(14, Math.min(22, (0.7 * window.innerHeight) / hm.cols.length))\n\t\t\thm.svgh =\n\t\t\t\thm.cols.length * (hm.rowh + hm.colspace) -\n\t\t\t\thm.colspace +\n\t\t\t\t(hm.colgrps.length - 1) * hm.colgspace +\n\t\t\t\thm.rowlabelw +\n\t\t\t\thm.rowgrplabelw\n\t\t} else {\n\t\t\tconst maxSvgw = (window.innerWidth * 0.92) / maxChartsPerRow\n\t\t\thm.colw = Math.min(Math.max(16, Math.round((maxSvgw - spacing) / hm.cols.length)), 30)\n\t\t\thm.svgw =\n\t\t\t\thm.cols.length * (hm.colw + hm.colspace) -\n\t\t\t\thm.colspace +\n\t\t\t\t(hm.colgrps.length - 1) * hm.colgspace +\n\t\t\t\thm.rowlabelw +\n\t\t\t\thm.rowgrplabelw\n\t\t\t/** Same comment as above, save this applies to when the plot\n\t\t\t * is vertical.*/\n\t\t\t// const numChartRows = Math.ceil(hm.numCharts / maxChartsPerRow)\n\t\t\t// hm.svgh = Math.max(350, Math.min(400, window.innerHeight * 0.5)) / (numChartRows > 3 ? 2 : 1)\n\t\t\thm.svgh = hm.plotLength + hm.rowlabelw\n\t\t}\n\t\tchart.svgh = hm.svgh\n\n\t\thm.h.yScale = {}\n\t\thm.h.xScale = {}\n\t\thm.h.yPrevBySeries = {}\n\t\thm.h.xPrevBySeries = {}\n\t\tconst ratio = hm.scale == 'byChart' ? 1 : chart.maxVisibleSeriesTotal / chart.maxVisibleAcrossCharts\n\t\tfor (const series of currserieses) {\n\t\t\tif (series.visibleData[0]) {\n\t\t\t\t// min should be 0 even if unit == 'log', since the bars are rendered in linear scale\n\t\t\t\t// according to the log of sample count. Previously, perhaps when log scale was used before,\n\t\t\t\t// min of 1 would have been required to avoid errors\n\t\t\t\tconst min = 0 // hm.unit == 'log' ? 1 : 0\n\t\t\t\tconst max =\n\t\t\t\t\thm.unit == 'pct'\n\t\t\t\t\t\t? series.visibleTotal\n\t\t\t\t\t\t: hm.unit == 'log'\n\t\t\t\t\t\t? chart.maxSeriesLogTotal\n\t\t\t\t\t\t: chart.maxVisibleSeriesTotal\n\n\t\t\t\thm.h.yScale[series.seriesId] = scaleLinear()\n\t\t\t\t\t.domain([min, max / ratio])\n\t\t\t\t\t.range([0, hm.svgh - hm.collabelh])\n\n\t\t\t\thm.h.xScale[series.seriesId] = scaleLinear()\n\t\t\t\t\t.domain([min, max / ratio])\n\t\t\t\t\t.range([0, hm.svgw - hm.rowlabelw])\n\n\t\t\t\thm.h.yPrevBySeries[series.seriesId] = 0\n\t\t\t\thm.h.xPrevBySeries[series.seriesId] = 0\n\t\t\t\t// y or x positions are calculated based on\n\t\t\t\t// previous bar height or width total, respectively\n\t\t\t\tfor (const data of series.visibleData) {\n\t\t\t\t\tdata.height = getRectHeight(data)\n\t\t\t\t\tdata.y = getRectY(data)\n\t\t\t\t\t// calculate x before width\n\t\t\t\t\tdata.x = getRectX(data)\n\t\t\t\t\tdata.width = getRectWidth(data)\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tcomputed.colfontsize = Math.min(hm.colw * hm.fontsizeratio, hm.collabelfontsizemax)\n\t\tcomputed.rowfontsize = Math.min(hm.rowh * hm.fontsizeratio, hm.rowlabelfontsizemax)\n\t\tcomputed.rowtextyalign = Math.min(hm.rowh, (hm.rowh + computed.rowfontsize) / 2) + hm.rowspace\n\t}\n\n\tfunction setIds(series) {\n\t\tif (!('seriesId' in series)) {\n\t\t\tseries.data.map(data => {\n\t\t\t\tif (data) series.seriesId = data[hm.serieskey]\n\t\t\t})\n\t\t}\n\t\tseries.data.map(d => {\n\t\t\td.rowId = d[hm.rowkey]\n\t\t\td.colId = d[hm.colkey]\n\t\t})\n\t}\n\n\tfunction seriesBindKey(series) {\n\t\treturn series.seriesId\n\t}\n\n\tfunction cellKey(d) {\n\t\treturn d.rowId + ' ' + d.colId //+' '+d.cellmateNum\n\t}\n\n\tfunction seriesExit() {\n\t\tselect(this).remove()\n\t}\n\n\tfunction seriesUpdate(series) {\n\t\tconst g = select(this).selectAll('.bars-cell').data(series.data.filter(filterData), cellKey)\n\n\t\tg.exit().each(function () {\n\t\t\tselect(this).remove() //style(\"display\", \"none\");\n\t\t})\n\n\t\tg.style('display', d => {\n\t\t\treturn hm.cols.includes(d.colId) ? 'block' : 'none'\n\t\t})\n\n\t\tg.select('rect')\n\t\t\t.datum(d => d)\n\t\t\t.transition()\n\t\t\t.duration(hm.duration)\n\t\t\t.attr('x', d => d.x)\n\t\t\t.attr('y', d => d.y)\n\t\t\t.attr('width', d => d.width)\n\t\t\t.attr('height', d => d.height)\n\t\t\t.attr('fill', hm.handlers.series.rectFill)\n\t\t\t.attr('stroke', hm.handlers.series.strokeFill)\n\n\t\tg.enter().append('g').each(addCell)\n\n\t\tg.selectAll('text').remove()\n\t\taddAsterisks(g)\n\t}\n\n\tfunction seriesEnter(series) {\n\t\tif (!series || !series.data.length) return\n\t\tselect(this)\n\t\t\t.attr('class', 'bars-cell-grp')\n\t\t\t.selectAll('g')\n\t\t\t.data(series.data.filter(filterData), cellKey)\n\t\t\t.enter()\n\t\t\t.append('g')\n\t\t\t.each(addCell)\n\t}\n\n\tfunction filterData(d) {\n\t\treturn hm.rows.includes(d.dataId)\n\t}\n\n\tfunction addCell(d) {\n\t\tconst g = select(this).attr('class', 'bars-cell').datum(d)\n\n\t\tg.style('display', d => {\n\t\t\treturn hm.cols.includes(d.colId) ? 'block' : 'none'\n\t\t})\n\t\tg.append('rect')\n\t\t\t.attr('x', d => d.x)\n\t\t\t.attr('y', d => d.y)\n\t\t\t.attr('width', d => d.width)\n\t\t\t.attr('height', d => d.height)\n\t\t\t.attr('fill', hm.handlers.series.rectFill)\n\t\t\t.attr('stroke', hm.handlers.series.strokeFill)\n\t\t\t.attr('shape-rendering', 'crispEdges')\n\t\t\t.style('opacity', 0)\n\t\t\t.transition()\n\t\t\t.delay(hm.delay)\n\t\t\t.duration(hm.duration)\n\t\t\t.style('opacity', 1)\n\t\taddPercent(g, d)\n\t\taddAsterisks(g)\n\t}\n\n\tfunction addPercent(g, d) {\n\t\tif (!barsapp.config.term2 && barsapp.config.settings.barchart.showPercent) {\n\t\t\tconst x = hm.orientation == 'horizontal' ? d.x + d.width + 8 : d.x + 4\n\t\t\tconst y = hm.orientation == 'horizontal' ? d.y + d.height * 0.7 : d.y - 4\n\t\t\tconst percent = (d.seriesTotal / d.chartTotal) * 100\n\t\t\tg.append('g')\n\t\t\t\t.attr('transform', `translate(${x}, ${y})`)\n\t\t\t\t.append('text')\n\t\t\t\t.style('font-size', '0.8em')\n\t\t\t\t.text(`${percent.toFixed(0)}%`)\n\t\t}\n\t}\n\n\t// add an asterisk to bars with a p-value below cutoff.\n\tfunction addAsterisks(g) {\n\t\tif (!barsapp.config.settings.barchart.asterisksVisible) {\n\t\t\t// if Asterisks visible checkbox is not checked.\n\t\t\treturn\n\t\t}\n\t\tg.append('text')\n\t\t\t.text(d => {\n\t\t\t\tconst test = d.groupPvalues && d.groupPvalues.term2tests.find(x => x.term2id == d.dataId)\n\t\t\t\tif (!test || test.skipped) return ''\n\t\t\t\tif (barsapp.config.settings.barchart.multiTestingCorr) {\n\t\t\t\t\t// is conducting multiple testing correction\n\t\t\t\t\treturn test.adjusted_p_value < 0.05 ? '*' : ''\n\t\t\t\t} else return test.pvalue < 0.05 ? '*' : ''\n\t\t\t})\n\t\t\t.attr('x', d => d.x + d.width / 2)\n\t\t\t.attr('y', d => d.y + d.height / 2)\n\t\t\t.attr('dy', '0.6em')\n\t\t\t.style('text-anchor', 'middle')\n\t\t\t.style('opacity', 0)\n\t\t\t.transition()\n\t\t\t.delay(hm.delay)\n\t\t\t.duration(hm.duration)\n\t\t\t.style('opacity', 1)\n\t}\n\n\tfunction seriesGrpTransform() {\n\t\tconst x = hm.colspace\n\t\tlet y = hm.colheadtop ? hm.collabelh : hm.colgrplabelh\n\t\tif (hm.legendontop) y += hm.legendh\n\t\treturn 'translate(' + x + ',' + y + ')'\n\t}\n\n\tfunction getRectHeight(d) {\n\t\tconst total = hm.unit == 'log' ? d.logTotal : d.total\n\t\tconst height = hm.orientation == 'vertical' ? hm.h.yScale[d.seriesId](total) : hm.rowh\n\t\tconst rowspace = 0 //Math.round(height) > 1 ? hm.rowspace : 0;\n\t\thm.h.yPrevBySeries[d.seriesId] += height + rowspace\n\t\treturn Math.max(1, height - rowspace)\n\t}\n\n\tfunction getRectY(d) {\n\t\tconst grpoffset = hm.colgrps.indexOf(d[hm.colgrpkey]) * hm.colgspace\n\t\tconst h = hm.unit == 'log' ? Math.max(0, hm.h.yPrevBySeries[d.seriesId]) : hm.h.yPrevBySeries[d.seriesId]\n\t\treturn hm.orientation == 'vertical'\n\t\t\t? hm.svgh - hm.collabelh - h\n\t\t\t: hm.cols.indexOf(d.colId) * (hm.rowh + hm.rowspace) + grpoffset\n\t}\n\n\tfunction getRectWidth(d) {\n\t\tconst total = hm.unit == 'log' ? d.logTotal : d.total\n\t\tconst width = hm.orientation == 'vertical' ? hm.colw : hm.h.xScale[d.seriesId](total)\n\t\tconst colspace = 0 //Math.round(width) > 1 ? hm.colspace : 0;\n\t\thm.h.xPrevBySeries[d.seriesId] += Math.max(1, width + colspace)\n\t\treturn Math.max(1, width - colspace)\n\t}\n\n\tfunction getRectX(d) {\n\t\tconst grpoffset = hm.colgrps.indexOf(d[hm.colgrpkey]) * hm.colgspace\n\t\treturn hm.orientation == 'vertical'\n\t\t\t? hm.cols.indexOf(d.colId) * (hm.colw + hm.colspace) + grpoffset\n\t\t\t: hm.h.xPrevBySeries[d.seriesId]\n\t}\n\n\tfunction colLabelsTransform() {\n\t\tlet x = 5 + hm.colspace\n\t\tlet y = hm.colheadtop ? /*hm.collabelh -*/ hm.borderwidth + 1 : hm.svgh - hm.collabelh + 25\n\t\tif (hm.legendontop) y += hm.legendh\n\t\treturn 'translate(' + x + ',' + y + ')'\n\t}\n\n\tfunction colLabelTransform(d) {\n\t\tconst grp = hm.col2name[d] ? hm.col2name[d].grp : ''\n\t\tconst x =\n\t\t\thm.colgrps.indexOf(grp) * hm.colgspace +\n\t\t\thm.cols.indexOf('id' in d ? d.id : d) * (hm.colw + hm.colspace) +\n\t\t\thm.colw / 2\n\t\tconst y = hm.colheadtop ? -1 * (hm.coltick + hm.collabtickspace) : hm.coltick + hm.collabtickspace\n\t\treturn 'translate(' + x + ',' + y + ')'\n\t}\n\n\tfunction addColLabel(d) {\n\t\tif (!this || d === undefined) return\n\t\tconst g = select(this).attr('transform', colLabelTransform).style('opacity', 0)\n\n\t\tg.append('text')\n\t\t\t.attr('transform', 'rotate(-40)')\n\t\t\t.attr('y', 2) //hm.colw / 3)\n\t\t\t.attr('text-anchor', 'end')\n\t\t\t.attr('font-size', computed.colfontsize + 'px')\n\t\t\t.html(hm.handlers.barLabel.text)\n\n\t\tg.transition().delay(hm.delay).duration(hm.duration).style('opacity', 1)\n\t}\n\n\tfunction updateColLabel(d) {\n\t\tconst g = select(this).datum(d)\n\n\t\tg.attr('transform', colLabelTransform)\n\n\t\tg.selectAll('text')\n\t\t\t.datum(d)\n\t\t\t//.transition().duration(hm.duration)\n\t\t\t//.attr('transform', 'rotate(-90)')\n\t\t\t.attr('y', 2) //hm.colw / 3)\n\t\t\t.attr('text-anchor', 'end')\n\t\t\t.attr('font-size', computed.colfontsize + 'px')\n\t\t\t.html(hm.handlers.barLabel.text)\n\t}\n\n\tfunction rowLabelsTransform() {\n\t\tconst y = hm.colheadtop ? hm.collabelh : hm.colgrplabelh //5 + hm.rowspace\n\t\tconst x = hm.rowheadleft ? /*hm.collabelh -*/ hm.borderwidth + 1 : hm.svgw - hm.rowlabelw + 20\n\t\treturn 'translate(' + x + ',' + y + ')'\n\t}\n\n\tfunction rowLabelTransform(d) {\n\t\tconst grp = hm.row2name[d] ? hm.row2name[d].grp : ''\n\t\tconst y =\n\t\t\thm.colgrps.indexOf(grp) * hm.rowgspace +\n\t\t\thm.cols.indexOf('id' in d ? d.id : d) * (hm.rowh + hm.rowspace) +\n\t\t\tcomputed.rowtextyalign\n\t\tconst x = hm.rowheadleft ? -1 * (hm.rowtick + hm.rowlabtickspace) : hm.rowtick + hm.rowlabtickspace\n\t\treturn 'translate(' + x + ',' + y + ')'\n\t}\n\n\tfunction addRowLabel(d) {\n\t\tif (!this || d === undefined) return\n\t\tconst g = select(this).attr('transform', rowLabelTransform).style('opacity', 0)\n\n\t\tg.append('text')\n\t\t\t.attr('x', 2) //hm.colw / 3)\n\t\t\t.attr('text-anchor', 'end')\n\t\t\t.attr('font-size', computed.rowfontsize + 'px')\n\t\t\t.html(hm.handlers.barLabel.text)\n\n\t\tg.transition().delay(hm.delay).duration(hm.duration).style('opacity', 1)\n\t}\n\n\tfunction updateRowLabel(d) {\n\t\tconst g = select(this).datum(d)\n\n\t\tg.attr('transform', rowLabelTransform) //.transition().duration(hm.duration)\n\n\t\tg.selectAll('text')\n\t\t\t.datum(d)\n\t\t\t//.transition().duration(hm.duration)\n\t\t\t//.attr('transform', 'rotate(-90)')\n\t\t\t.attr('x', 2) //hm.colw / 3)\n\t\t\t.attr('text-anchor', 'end')\n\t\t\t.attr('font-size', computed.rowfontsize + 'px')\n\t\t\t.html(hm.handlers.barLabel.text)\n\t}\n\n\tfunction rowTextWeight(d) {\n\t\treturn d == currCell.rowId ? 700 : ''\n\t}\n\n\tfunction rowTextSize(d) {\n\t\treturn d == currCell.rowId ? Math.max(12, computed.rowfontsize) : computed.rowfontsize\n\t}\n\n\tfunction rowTextColor(d) {\n\t\treturn d == currCell.rowId ? '#00f' : ''\n\t}\n\n\tfunction colTextWeight(d) {\n\t\treturn d == currCell.colId ? 700 : ''\n\t}\n\n\tfunction colTextSize(d) {\n\t\treturn d == currCell.colId ? 12 : computed.colfontsize\n\t}\n\n\tfunction colTextColor(d) {\n\t\treturn d == currCell.colId ? '#00f' : ''\n\t}\n\n\tfunction renderAxes(hm, prevOrientation, visibleTotal) {\n\t\taxisG\n\t\t\t.style('opacity', prevOrientation != hm.orientation ? 0 : 1)\n\t\t\t.transition()\n\t\t\t.duration(1500)\n\t\t\t.style('opacity', 1)\n\t\tif (hm.orientation == 'vertical') {\n\t\t\trenderAxesOnVertical(hm, visibleTotal)\n\t\t} else {\n\t\t\trenderAxesOnHorizontal(hm, visibleTotal)\n\t\t}\n\t}\n\n\tfunction renderAxesOnVertical(s, visibleTotal) {\n\t\txAxis.style('display', 'none')\n\t\tyLine.style('display', 'none')\n\t\tconst colLabelBox = collabels.node().getBBox()\n\t\t/*\n\t\tconst lineY = s.svgh - s.collabelh + 24\n    xLine\n    .style('display','block')\n    .attr(\"x1\", 1)\n    .attr(\"x2\", s.svgw - s.svgPadding.left - hm.rowlabelw + s.cols.length*s.colspace)\n    .attr(\"y1\", lineY)\n    .attr(\"y2\", lineY)\n    */\n\n\t\txTitle.selectAll('*').remove()\n\t\tconst xLabel = hm.handlers.xAxis.text(visibleTotal)\n\t\txTitle\n\t\t\t.append('text')\n\t\t\t.style('text-anchor', 'middle')\n\t\t\t.style('font-size', s.axisTitleFontSize + 'px')\n\t\t\t.style('font-weight', 600)\n\t\t\t.text(xLabel)\n\n\t\t//const textBBox = xTitle.node().getBBox()\n\t\tsetTimeout(() => {\n\t\t\txTitle.attr(\n\t\t\t\t'transform',\n\t\t\t\t'translate(' +\n\t\t\t\t\t(s.svgw - s.svgPadding.left - s.svgPadding.right - s.rowlabelw) / 2 +\n\t\t\t\t\t',' +\n\t\t\t\t\t(colLabelBox.height + hm.svgh - hm.collabelh + 20 + s.axisTitleFontSize) +\n\t\t\t\t\t')'\n\t\t\t)\n\t\t}, 0)\n\n\t\tconst range = [s.colgrplabelh, s.svgh - s.collabelh + s.colgrplabelh - s.borderwidth + 1]\n\t\tyAxis.style('display', 'block').call(getAxisScale(axisLeft, range, true))\n\n\t\tyTitle.selectAll('*').remove()\n\t\tconst h = s.svgh - s.collabelh\n\t\tyTitle\n\t\t\t.style('font-weight', 600)\n\t\t\t.attr('transform', 'translate(' + (-s.svgPadding.left - s.axisTitleFontSize) + ',' + h / 2 + ')rotate(-90)')\n\t\t\t.append('text')\n\t\t\t.style('text-anchor', 'middle')\n\t\t\t.style('font-size', s.axisTitleFontSize + 'px')\n\t\t\t.attr('data-testid', 'sjpp-massbarchart-vertical-charttitle')\n\t\t\t.text(hm.handlers.yAxis.text(visibleTotal))\n\t}\n\n\tfunction renderAxesOnHorizontal(s, visibleTotal) {\n\t\tyAxis.style('display', 'none')\n\t\txLine.style('display', 'none')\n\t\tyTitle.selectAll('*').remove()\n\n\t\tconst yLabel = hm.handlers.yAxis.text(visibleTotal)\n\t\tyTitle\n\t\t\t.append('text')\n\t\t\t.style('text-anchor', 'end')\n\t\t\t.style('font-size', s.axisTitleFontSize + 'px')\n\t\t\t.style('font-weight', 600)\n\t\t\t.text(yLabel)\n\n\t\t//const rowLabelBox = rowlabels.node().getBBox()\n\t\tsetTimeout(() => {\n\t\t\tyTitle.style('text-anchor', 'end').attr(\n\t\t\t\t'transform',\n\t\t\t\t'translate(' +\n\t\t\t\t\t0 + //-rowLabelBox.width/2 +\n\t\t\t\t\t',0)'\n\t\t\t)\n\t\t}, 0)\n\n\t\tconst range = [0, s.svgw - s.rowlabelw] // + s.rowgrplabelw - s.borderwidth]\n\t\tlet y = s.colheadtop ? s.collabelh - 2 : s.colgrplabelh - 2\n\t\tif (s.legendontop) y += s.legendh\n\n\t\txAxis\n\t\t\t.style('display', 'block')\n\t\t\t.attr('transform', 'translate(2.5,' + y + ')')\n\t\t\t.call(getAxisScale(axisTop, range))\n\t\t/*\n    yLine\n    .style('display','block')\n    .attr(\"x1\", 0)\n    .attr(\"x2\", 0)\n    .attr(\"y1\", y)\n    .attr(\"y2\", y + s.cols.length*s.rowh + 2)\n    */\n\n\t\txTitle.selectAll('*').remove()\n\t\tconst w = s.svgw - s.rowlabelw\n\t\txTitle\n\t\t\t.attr('transform', 'translate(' + w / 2 + ',0)')\n\t\t\t.append('text')\n\t\t\t.style('text-anchor', 'middle')\n\t\t\t.style('font-size', s.axisTitleFontSize + 'px')\n\t\t\t.style('font-weight', 600)\n\t\t\t.attr('data-testid', 'sjpp-massbarchart-horizontal-charttitle')\n\t\t\t.text(hm.handlers.xAxis.text(visibleTotal))\n\t}\n\n\tfunction getAxisScale(axisGenerator, range, reverseDomain = false) {\n\t\tconst ratio =\n\t\t\thm.scale == 'byChart' || hm.clickedAge ? 1 : chart.maxVisibleSeriesTotal / chart.maxVisibleAcrossCharts\n\t\t// NOTE: domain min value default assumes that the barchart is used for sample counts/integer values\n\t\t// TODO: may need to support float values in barchart?\n\t\tconst min = hm.unit == 'log' ? 1 : 0\n\t\tconst max = hm.unit == 'pct' ? 100 : chart.maxVisibleSeriesTotal //maxVisibleAcrossCharts\n\t\tconst domain = [min, max / ratio]\n\t\tif (reverseDomain) domain.reverse()\n\n\t\tconst scale = hm.unit == 'log' ? scaleLog() : scaleLinear()\n\t\tscale.domain(domain).range(range)\n\t\tconst tickFormatter = hm.unit == 'log' ? v => formatter(Math.pow(10, v)) : formatter\n\t\tif (hm.unit == 'log') {\n\t\t\tconst values = [1]\n\t\t\tfor (let i = 1; i < Math.log10(max); i++) {\n\t\t\t\tvalues.push(Math.pow(10, i))\n\t\t\t}\n\t\t\treturn axisGenerator(scale).tickValues(values).tickFormat(formatter)\n\t\t} else {\n\t\t\treturn axisGenerator(scale).ticks(5).tickFormat(formatter)\n\t\t}\n\t}\n\n\tfunction seriesMouseOver(event) {\n\t\tconst t = event.target.tagName == 'tspan' ? event.target.parentNode : event.target\n\t\tconst d = t.__data__\n\n\t\tif (d && (t.tagName == 'rect' || t.nodeName == 'text')) {\n\t\t\t//console.log(_data_)\n\t\t\t//if (!hm.h.isEmptyCell(d)) {\n\t\t\tcurrCell = d\n\t\t\t//if (!hm.showgrid) currRects.style('stroke', rectStroke)\n\t\t\t//else {\n\t\t\t//const x = d.x\n\t\t\t//const y = getRectY(d.cellmates ? d.cellmates[0] : d)\n\n\t\t\tcurrColTexts.attr('font-weight', colTextWeight).attr('font-size', colTextSize).style('fill', colTextColor)\n\n\t\t\t//resizeCaller.hide()\n\t\t\t//}\n\t\t} else {\n\t\t\tcurrCell = emptyObj\n\t\t\t//resizeCaller.show()\n\t\t\tcurrRowTexts.attr('font-weight', rowTextWeight).attr('font-size', rowTextSize).style('fill', rowTextColor)\n\t\t\tcurrColTexts.attr('font-weight', colTextWeight).attr('font-size', colTextSize).style('fill', colTextColor)\n\t\t}\n\n\t\thm.handlers.series.mouseover(event, d)\n\t}\n\n\tfunction seriesMouseOut(event) {\n\t\tevent.stopPropagation()\n\t\t//currRowTexts.attr('font-weight','').attr('font-size',computed.rowfontsize).style('fill','')\n\t\tcurrColTexts.attr('font-weight', '').attr('font-size', computed.colfontsize).style('fill', '')\n\t\t//resizeCaller.show()\n\t\tcurrCell = emptyObj\n\t\tif (hm.handlers.series.mouseout) hm.handlers.series.mouseout(event)\n\t}\n\n\tfunction colLabelMouseover(event) {\n\t\tconst d = event.target.__data__\n\t\tif (!d) return\n\t\tconst r = hm.col2name['id' in d ? d.id : d]\n\t\tconst cell = { colId: r.name }\n\t\tcell[hm.colkey] = r.name\n\t\tcell[hm.colgrpkey] = r.grp\n\t\t//seriesMouseOver(cell)\n\n\t\tif (hm.handlers.barLabel.mouseover) hm.handlers.barLabel.mouseover(event)\n\t}\n\n\tfunction colLabelMouseout(event) {\n\t\tcurrCell = emptyObj\n\t\t//resizeCaller.show()\n\t\tif (hm.handlers.barLabel.mouseout) hm.handlers.barLabel.mouseout(event)\n\t}\n\n\tfunction seriesClick(event) {\n\t\tconst d = event.target.__data__\n\t\tbarsapp.handlers.series.click(event, d)\n\t}\n\n\tmain.hm = hm\n\n\tmain.styles = () => {\n\t\tconst styles = {}\n\t\tfor (const key in defaults) {\n\t\t\tstyles[key] = hm[key]\n\t\t}\n\t\treturn styles\n\t}\n\n\treturn main\n}\n"],
+  "mappings": 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+}