@sjcrh/proteinpaint-client 2.182.0 → 2.182.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-YHYYSSKR.js +1371 -0
- package/dist/AIProjectAdmin-D4AASQBM.js +830 -0
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- package/dist/DEinput-KVILE7QQ.js +297 -0
- package/dist/DifferentialAnalysis-P6GKHAS5.js +238 -0
- package/dist/Disco-IMLXEBPG.js +3235 -0
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- package/dist/NumRegularBinEditor-OYELFDIB.js +36 -0
- package/dist/NumRegularBinEditor.unit.spec-44SALKLH.js +225 -0
- package/dist/NumSplineEditor-SENQC4P2.js +190 -0
- package/dist/NumSplineEditor.unit.spec-XKB4XXU4.js +197 -0
- package/dist/NumericDensity-GCNWO7YS.js +36 -0
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- package/dist/barchart.events-MQNQTSWI.js +45 -0
- package/dist/barchart.integration.spec-DSO2377T.js +1675 -0
- package/dist/bars.renderer-S7A7I6BQ.js +12 -0
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- package/dist/block.mds.expressionrank-643H7PN7.js +357 -0
- package/dist/block.mds.geneboxplot-C222ODSL.js +826 -0
- package/dist/block.mds.junction-C5DJRUOK.js +1543 -0
- package/dist/block.mds.svcnv-4G74JQ7Y.js +6799 -0
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- package/dist/block.tk.pgv-HETJVWXH.js +942 -0
- package/dist/brainImaging-K3LHK3DD.js +421 -0
- package/dist/chat-BYX5ARUK.js +148 -0
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// termsetting/handlers/termCollection.ts
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var TermCollectionHandler = class extends HandlerBase {
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constructor(opts) {
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}
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|
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async showEditMenu(div) {
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const self = this.termsetting;
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div.selectAll("*").remove();
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|
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};
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const callback = this.tw.term.memberType == "numeric" ? addNumericTable(self, groupDiv, terms, noButtonCallback) : addCategoricalTable(self, groupDiv, terms, noButtonCallback);
|
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|
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div.append("div").append("div").style("float", "right").style("padding", "6px 20px").append("button").attr("class", "sjpp_apply_btn sja_filter_tag_btn").text("Apply").on("click", callback);
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}
|
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|
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getPillStatus() {
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|
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return this.tw.getStatus(this.termsetting.usecase);
|
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|
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}
|
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|
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// inherited from HanlderBase
|
|
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|
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// getPillName(d: PillData) {}
|
|
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|
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};
|
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|
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function addNumericTable(self, div, terms, noButtonCallback) {
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|
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const rows = [];
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}
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const selectedRows = terms.map((term, index) => self.term.termlst.find((t) => t.id === term.id) ? index : -1).filter((index) => index !== -1);
|
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|
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const columns = [{ label: "VARIABLES" }, { label: "Use for sorting" }];
|
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|
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renderTable({
|
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|
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rows,
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columns,
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div,
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|
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maxHeight: "40vh",
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|
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noButtonCallback,
|
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|
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striped: false,
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|
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|
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|
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|
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|
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selectedRows,
|
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|
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columnButtons: void 0,
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|
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//Leave until table.js is typed
|
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|
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buttons: void 0
|
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|
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});
|
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|
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return () => {
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|
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const q = self.q;
|
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|
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const trs = div.select("table").select("tbody").node().querySelectorAll("tr");
|
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|
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self.term.termlst = terms.filter((_, i) => trs[i].querySelectorAll("td")[1].querySelector("input")?.checked);
|
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|
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q.numerators = terms.filter((term, i) => {
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}).map((t) => t.id);
|
|
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|
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self.api.runCallback();
|
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|
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};
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|
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}
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|
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function addCategoricalTable(self, div, terms, noButtonCallback) {
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|
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|
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rows.push([{ value: term.name }]);
|
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|
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}
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|
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const selectedRows = terms.map((term, index) => self.term.termlst.find((t) => t.id === term.id) ? index : -1).filter((index) => index !== -1);
|
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|
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const columns = [{ label: "VARIABLES" }];
|
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|
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renderTable({
|
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|
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rows,
|
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columns,
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|
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div: div.append("div").style("margin-top", "10px"),
|
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|
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maxWidth: "30vw",
|
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|
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maxHeight: "40vh",
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|
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noButtonCallback,
|
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|
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striped: false,
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|
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showHeader: true,
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|
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//false,
|
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|
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selectedRows,
|
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|
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columnButtons: void 0,
|
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|
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//Leave until table.js is typed
|
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|
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buttons: void 0
|
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|
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});
|
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|
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const categoryDiv = div.append("div").style("margin-top", "15px");
|
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|
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const values = Object.assign({}, ...self.tw.term.termlst?.map((t) => t.values || {}) ?? []);
|
|
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|
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const categoryTable = categoryDiv.append("div");
|
|
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|
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const ckSource = self.tw.q.categoryKeys || self.tw.term.categoryKeys || [];
|
|
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|
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renderTable({
|
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|
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columns: [{ label: "CATEGORIES" }],
|
|
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|
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rows: ckSource.map((ck) => {
|
|
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|
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return [{ value: values[ck.key]?.label ?? ck.key, checked: ck.shown }];
|
|
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|
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}),
|
|
139
|
-
div: categoryTable,
|
|
140
|
-
maxWidth: "30vw",
|
|
141
|
-
maxHeight: "40vh",
|
|
142
|
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noButtonCallback: () => {
|
|
143
|
-
},
|
|
144
|
-
// FIXME to supply a real callback
|
|
145
|
-
striped: false,
|
|
146
|
-
showHeader: true,
|
|
147
|
-
//false,
|
|
148
|
-
selectAll: true,
|
|
149
|
-
columnButtons: void 0,
|
|
150
|
-
//Leave until table.js is typed
|
|
151
|
-
buttons: void 0
|
|
152
|
-
});
|
|
153
|
-
return () => {
|
|
154
|
-
const trs = div.select("table").select("tbody").node().querySelectorAll("tr");
|
|
155
|
-
self.term.termlst = terms.filter((term, i) => {
|
|
156
|
-
const checked = trs[i].querySelectorAll("td")[1].querySelector("input")?.checked;
|
|
157
|
-
return checked === true;
|
|
158
|
-
});
|
|
159
|
-
const catTrs = categoryTable.select("table").select("tbody").node().querySelectorAll("tr");
|
|
160
|
-
self.q.categoryKeys = ckSource.map((ck, i) => {
|
|
161
|
-
const checked = catTrs[i].querySelectorAll("td")[1].querySelector("input")?.checked;
|
|
162
|
-
return { key: ck.key, shown: !!checked };
|
|
163
|
-
});
|
|
164
|
-
self.api.runCallback();
|
|
165
|
-
};
|
|
166
|
-
}
|
|
167
|
-
function fillTW(tw) {
|
|
168
|
-
if (!tw.type) tw.type = "termCollection";
|
|
169
|
-
if (!tw.q) tw.q = { mode: "continuous", type: "compositePercentage" };
|
|
170
|
-
else tw.q.mode = "continuous";
|
|
171
|
-
return tw;
|
|
172
|
-
}
|
|
173
|
-
export {
|
|
174
|
-
TermCollectionHandler,
|
|
175
|
-
fillTW
|
|
176
|
-
};
|
|
177
|
-
//# sourceMappingURL=termCollection-EE6AOIVA.js.map
|
|
@@ -1,206 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
SearchHandler
|
|
3
|
-
} from "./chunk-UQACPOCM.js";
|
|
4
|
-
import {
|
|
5
|
-
require_tape
|
|
6
|
-
} from "./chunk-QWOE5YTB.js";
|
|
7
|
-
import "./chunk-7FEHI46K.js";
|
|
8
|
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import "./chunk-HJ6L54YS.js";
|
|
9
|
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import "./chunk-XD6BFNMR.js";
|
|
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|
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import "./chunk-2SRMRC6L.js";
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|
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import "./chunk-TCPU43TU.js";
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|
12
|
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import "./chunk-XDI4UFCZ.js";
|
|
13
|
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import "./chunk-FN5XPUPH.js";
|
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|
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import "./chunk-LSEFWW72.js";
|
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|
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import "./chunk-5EF5U7MX.js";
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|
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import "./chunk-IQIXGTQV.js";
|
|
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|
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import "./chunk-UCLS2SVB.js";
|
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|
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import "./chunk-MVTCBVSX.js";
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|
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import "./chunk-F6V4AYWP.js";
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|
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|
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import "./chunk-DQC5FFGV.js";
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|
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import "./chunk-DVDDXOWT.js";
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|
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import "./chunk-6MSCYO7K.js";
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|
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import "./chunk-22NJUYET.js";
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|
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import "./chunk-MDL2HG3N.js";
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|
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import "./chunk-IGEQI6MR.js";
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|
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import "./chunk-BEWDIM6H.js";
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|
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import "./chunk-IH7ILDJS.js";
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|
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import "./chunk-LOZEKOES.js";
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|
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import "./chunk-TOU7EVFQ.js";
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|
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import "./chunk-OAWQ6LOO.js";
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|
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import "./chunk-SEEYV6P2.js";
|
|
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|
-
import {
|
|
34
|
-
select_default
|
|
35
|
-
} from "./chunk-NDWTN4U5.js";
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import "./chunk-OMR2DT66.js";
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import {
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__toESM
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} from "./chunk-HFNDKYVF.js";
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// termdb/handlers/test/termCollection.unit.spec.ts
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var import_tape = __toESM(require_tape(), 1);
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function getHolder() {
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return select_default("body").append("div");
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}
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function getTermCollectionDetails(overrides = {}) {
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return {
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name: "Test Collection",
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type: "gene",
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memberType: "gene",
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termlst: [
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{ id: "gene1", name: "TP53", values: { tissue: "Lung" } },
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{ id: "gene2", name: "KRAS", values: { tissue: "Colon" } },
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{ id: "gene3", name: "BRCA1", values: { tissue: "Breast" } }
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],
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categoryKeys: [
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{ key: "tissue", shown: true },
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{ key: "expression", shown: false }
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],
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propsByTermId: {
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gene1: { color: "#FF0000" },
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gene2: { color: "#00FF00" }
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},
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...overrides
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};
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}
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(0, import_tape.default)("\n", function(test) {
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test.comment("-***- termdb/handlers/termCollection -***-");
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test.end();
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});
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(0, import_tape.default)("init() should render term list table with all terms from details.termlst", async (test) => {
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const handler = new SearchHandler();
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const holder = getHolder();
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const details = getTermCollectionDetails();
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await handler.init({
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holder,
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callback: () => {
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},
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app: {},
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details
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});
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const table = holder.select("table");
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test.ok(table.node(), "Should render a table");
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const rows = table.selectAll("tbody tr");
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test.equal(rows.size(), 3, "Should render three rows for three terms");
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const rowTexts = rows.nodes().map((row) => row.textContent.trim());
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test.ok(rowTexts[0].includes("TP53"), "First row should contain TP53");
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test.ok(rowTexts[1].includes("KRAS"), "Second row should contain KRAS");
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test.ok(rowTexts[2].includes("BRCA1"), "Third row should contain BRCA1");
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if (test["_ok"]) holder.remove();
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test.end();
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});
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(0, import_tape.default)("init() should render category table when details.categoryKeys is present", async (test) => {
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const handler = new SearchHandler();
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const holder = getHolder();
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const details = getTermCollectionDetails();
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await handler.init({
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holder,
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callback: () => {
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},
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app: {},
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details
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});
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const tables = holder.selectAll("table");
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test.equal(tables.size(), 2, "Should render two tables when categoryKeys is present");
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const categoryTable = tables.nodes()[1];
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const categoryRows = select_default(categoryTable).selectAll("tbody tr");
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test.equal(categoryRows.size(), 2, "Should render two rows for two categories");
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const categoryTexts = categoryRows.nodes().map((row) => row.textContent.trim());
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test.ok(categoryTexts[0].includes("tissue"), "Should display tissue category key");
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test.ok(categoryTexts[1].includes("expression"), "Should display expression category key");
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if (test["_ok"]) holder.remove();
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test.end();
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});
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(0, import_tape.default)("init() should call callback with selected terms, categoryKeys, and properties", async (test) => {
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const handler = new SearchHandler();
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const holder = getHolder();
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const details = getTermCollectionDetails();
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let callbackResult;
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await handler.init({
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holder,
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callback: (result) => {
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callbackResult = result;
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},
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app: {},
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details
|
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});
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const termsTable = holder.selectAll("table").nodes()[0];
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const checkboxes = termsTable.querySelectorAll('tbody input[type="checkbox"]');
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checkboxes[0].checked = true;
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|
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checkboxes[1].checked = true;
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|
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checkboxes[2].checked = false;
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const categoryTable = holder.selectAll("table").nodes()[1];
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const categoryCheckboxes = categoryTable.querySelectorAll('tbody input[type="checkbox"]');
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categoryCheckboxes[0].checked = true;
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categoryCheckboxes[1].checked = false;
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const selectBtn = holder.select("button.sjpp_apply_btn").node();
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selectBtn.click();
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|
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test.equal(callbackResult?.type, "termCollection", "Should set type to termCollection");
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|
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test.equal(callbackResult?.name, "Test Collection", "Should pass collection name");
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141
|
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test.equal(callbackResult?.memberType, "gene", "Should pass memberType");
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142
|
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test.deepEqual(callbackResult?.termIds, ["gene1", "gene2"], "Should pass selected term IDs");
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143
|
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test.equal(callbackResult?.termlst.length, 2, "Should pass selected term list with correct length");
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|
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test.equal(callbackResult?.termlst[0].name, "TP53", "First selected term should be TP53");
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|
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test.equal(callbackResult?.termlst[1].name, "KRAS", "Second selected term should be KRAS");
|
|
146
|
-
test.deepEqual(
|
|
147
|
-
callbackResult?.categoryKeys,
|
|
148
|
-
[
|
|
149
|
-
{ key: "tissue", shown: true },
|
|
150
|
-
{ key: "expression", shown: false }
|
|
151
|
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],
|
|
152
|
-
"Should pass updated categoryKeys with shown status"
|
|
153
|
-
);
|
|
154
|
-
test.deepEqual(
|
|
155
|
-
callbackResult?.propsByTermId,
|
|
156
|
-
{ gene1: { color: "#FF0000" }, gene2: { color: "#00FF00" } },
|
|
157
|
-
"Should pass propsByTermId for selected terms only"
|
|
158
|
-
);
|
|
159
|
-
if (test["_ok"]) holder.remove();
|
|
160
|
-
test.end();
|
|
161
|
-
});
|
|
162
|
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(0, import_tape.default)("init() should not render category table when details.categoryKeys is missing", async (test) => {
|
|
163
|
-
const handler = new SearchHandler();
|
|
164
|
-
const holder = getHolder();
|
|
165
|
-
const details = getTermCollectionDetails({ categoryKeys: void 0 });
|
|
166
|
-
await handler.init({
|
|
167
|
-
holder,
|
|
168
|
-
callback: () => {
|
|
169
|
-
},
|
|
170
|
-
app: {},
|
|
171
|
-
details
|
|
172
|
-
});
|
|
173
|
-
const tables = holder.selectAll("table");
|
|
174
|
-
test.equal(tables.size(), 1, "Should render only one table when categoryKeys is missing");
|
|
175
|
-
if (test["_ok"]) holder.remove();
|
|
176
|
-
test.end();
|
|
177
|
-
});
|
|
178
|
-
(0, import_tape.default)("init() should show alert when no terms are selected", async (test) => {
|
|
179
|
-
const handler = new SearchHandler();
|
|
180
|
-
const holder = getHolder();
|
|
181
|
-
const details = getTermCollectionDetails();
|
|
182
|
-
let alertCalled = false;
|
|
183
|
-
const originalAlert = window.alert;
|
|
184
|
-
window.alert = () => {
|
|
185
|
-
alertCalled = true;
|
|
186
|
-
};
|
|
187
|
-
await handler.init({
|
|
188
|
-
holder,
|
|
189
|
-
callback: () => test.fail("Callback should not be called when no terms selected"),
|
|
190
|
-
app: {},
|
|
191
|
-
details
|
|
192
|
-
});
|
|
193
|
-
const termsTable = holder.selectAll("table").nodes()[0];
|
|
194
|
-
const checkboxes = termsTable.querySelectorAll('tbody input[type="checkbox"]');
|
|
195
|
-
for (const cb of checkboxes) {
|
|
196
|
-
;
|
|
197
|
-
cb.checked = false;
|
|
198
|
-
}
|
|
199
|
-
const selectBtn = holder.select("button.sjpp_apply_btn").node();
|
|
200
|
-
selectBtn.click();
|
|
201
|
-
test.ok(alertCalled, "Should show alert when no terms are selected");
|
|
202
|
-
window.alert = originalAlert;
|
|
203
|
-
if (test["_ok"]) holder.remove();
|
|
204
|
-
test.end();
|
|
205
|
-
});
|
|
206
|
-
//# sourceMappingURL=termCollection.unit.spec-4DIW3CJ3.js.map
|
package/dist/tk-ITZCKOQ5.js
DELETED
|
@@ -1,44 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
loadTk,
|
|
3
|
-
rangequery_rglst
|
|
4
|
-
} from "./chunk-HH4QLSTK.js";
|
|
5
|
-
import "./chunk-SKMFMGCD.js";
|
|
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|
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import "./chunk-MNRYCG2S.js";
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|
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import "./chunk-W6UUEAEP.js";
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|
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import "./chunk-V2OJLJSK.js";
|
|
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|
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import "./chunk-RZ5JP44H.js";
|
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|
-
import "./chunk-DONWY7TP.js";
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import "./chunk-7FEHI46K.js";
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|
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import "./chunk-HJ6L54YS.js";
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|
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|
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import "./chunk-XD6BFNMR.js";
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|
14
|
-
import "./chunk-2SRMRC6L.js";
|
|
15
|
-
import "./chunk-TCPU43TU.js";
|
|
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|
-
import "./chunk-XDI4UFCZ.js";
|
|
17
|
-
import "./chunk-FN5XPUPH.js";
|
|
18
|
-
import "./chunk-LSEFWW72.js";
|
|
19
|
-
import "./chunk-5EF5U7MX.js";
|
|
20
|
-
import "./chunk-IQIXGTQV.js";
|
|
21
|
-
import "./chunk-UCLS2SVB.js";
|
|
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|
-
import "./chunk-MVTCBVSX.js";
|
|
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|
-
import "./chunk-F6V4AYWP.js";
|
|
24
|
-
import "./chunk-5OHXYXLD.js";
|
|
25
|
-
import "./chunk-DQC5FFGV.js";
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|
26
|
-
import "./chunk-DVDDXOWT.js";
|
|
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|
-
import "./chunk-6MSCYO7K.js";
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|
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|
-
import "./chunk-22NJUYET.js";
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|
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|
-
import "./chunk-MDL2HG3N.js";
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|
30
|
-
import "./chunk-IGEQI6MR.js";
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|
-
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|
-
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|
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|
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|
-
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|
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|
-
import "./chunk-OAWQ6LOO.js";
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|
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|
-
import "./chunk-SEEYV6P2.js";
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|
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|
-
import "./chunk-NDWTN4U5.js";
|
|
38
|
-
import "./chunk-OMR2DT66.js";
|
|
39
|
-
import "./chunk-HFNDKYVF.js";
|
|
40
|
-
export {
|
|
41
|
-
loadTk,
|
|
42
|
-
rangequery_rglst
|
|
43
|
-
};
|
|
44
|
-
//# sourceMappingURL=tk-ITZCKOQ5.js.map
|