@sjcrh/proteinpaint-client 2.181.0 → 2.183.0

package/dist/chunk-22KWZOCN.js

@@ -1,153 +0,0 @@
-import {
-  NumericModes
-} from "./chunk-2UWHV2SB.js";
-
-// plots/proteomeAbundance.js
-function renderAssayAndCohortRadios({
-  holder,
-  assays,
-  selectedProteomeDetails,
-  onChange,
-  assayTitle = "Assay Type",
-  cohortTitle = "Cohort"
-}) {
-  const assayEntries = Object.entries(assays || {});
-  if (!assayEntries.length) {
-    holder.append("div").attr("class", "sja_sharp_border").style("padding", "8px").text("No proteome assays available.");
-    return {
-      getSelected: () => ({ assay: void 0, cohort: void 0 })
-    };
-  }
-  const initialProteomeDetails = selectedProteomeDetails || {};
-  const assayRadioName = `sjpp-proteome-assay-${Math.random().toString().slice(-6)}`;
-  const cohortRadioName = `sjpp-proteome-cohort-${Math.random().toString().slice(-6)}`;
-  let selectedAssay = assays[initialProteomeDetails.assay] ? initialProteomeDetails.assay : assayEntries[0][0];
-  let selectedCohort = initialProteomeDetails.cohort;
-  holder.append("div").style("margin", "3px 5px").style("padding", "3px 5px").style("font-weight", 600).text(assayTitle);
-  const assayListDiv = holder.append("div").style("margin-bottom", "10px");
-  holder.append("div").style("margin", "3px 5px").style("padding", "3px 5px").style("font-weight", 600).text(cohortTitle);
-  const cohortListDiv = holder.append("div");
-  for (const [assayKey] of assayEntries) {
-    const assayLabel = assayListDiv.append("label").attr("class", "sja_sharp_border").style("display", "block").style("cursor", "pointer").style("padding", "6px 8px").style("border-radius", "4px");
-    assayLabel.append("input").attr("type", "radio").attr("name", assayRadioName).attr("value", assayKey).property("checked", assayKey === selectedAssay).style("margin-right", "6px").on("change", () => {
-      selectedAssay = assayKey;
-      selectedCohort = void 0;
-      renderCohortOptions();
-      onChange?.({ assay: selectedAssay, cohort: selectedCohort });
-    });
-    assayLabel.append("span").text(assayKey);
-  }
-  renderCohortOptions();
-  onChange?.({ assay: selectedAssay, cohort: selectedCohort });
-  return {
-    getSelected: () => ({ assay: selectedAssay, cohort: selectedCohort })
-  };
-  function renderCohortOptions() {
-    cohortListDiv.selectAll("*").remove();
-    const cohorts = Object.keys(assays[selectedAssay]?.cohorts || {});
-    if (!cohorts.length) {
-      selectedCohort = void 0;
-      cohortListDiv.append("div").attr("class", "sja_sharp_border").style("padding", "8px").text("No cohorts available.");
-      return;
-    }
-    if (!selectedCohort || !assays[selectedAssay]?.cohorts?.[selectedCohort]) {
-      selectedCohort = cohorts.includes(initialProteomeDetails.cohort) ? initialProteomeDetails.cohort : cohorts[0];
-    }
-    for (const cohortKey of cohorts) {
-      const cohortLabel = cohortListDiv.append("label").attr("class", "sja_sharp_border").style("display", "block").style("cursor", "pointer").style("padding", "6px 8px").style("border-radius", "4px");
-      cohortLabel.append("input").attr("type", "radio").attr("name", cohortRadioName).attr("value", cohortKey).property("checked", cohortKey === selectedCohort).style("margin-right", "6px").on("change", () => {
-        selectedCohort = cohortKey;
-        onChange?.({ assay: selectedAssay, cohort: selectedCohort });
-      });
-      cohortLabel.append("span").text(cohortKey);
-    }
-  }
-}
-function makeChartBtnMenu(holder, chartsInstance) {
-  chartsInstance.dom.tip.clear();
-  const assays = chartsInstance.state.termdbConfig?.queries?.proteome?.assays || {};
-  const menuDiv = holder.append("div");
-  let selectedProteomeDetails;
-  let launchOption;
-  const syncLaunchButtonState = () => {
-    if (!launchOption) return;
-    if (selectedProteomeDetails?.cohort) launchOption.style("opacity", 1).style("pointer-events", "auto");
-    else launchOption.style("opacity", 0.5).style("pointer-events", "none");
-  };
-  renderAssayAndCohortRadios({
-    holder: menuDiv,
-    assays,
-    onChange: (proteomeDetails) => {
-      selectedProteomeDetails = proteomeDetails;
-      syncLaunchButtonState();
-    }
-  });
-  launchOption = menuDiv.append("button").attr("class", "sjpp_apply_btn sja_filter_tag_btn sja_sharp_border").style("display", "block").style("margin", "10px auto 10px").text("Select Protein").on("click", () => {
-    if (!selectedProteomeDetails?.cohort) return;
-    const { assay, cohort } = selectedProteomeDetails;
-    const assayCohortTitle = `${assay}: ${cohort}`;
-    const chart = {
-      label: "Protein Abundance",
-      chartType: "proteomeAbundance",
-      usecase: {
-        target: "proteomeAbundance",
-        detail: "term",
-        proteomeDetails: { assay, cohort },
-        label: `Assay: ${assay}; Cohort: ${cohort}`
-      },
-      processSelection: (termlst) => termlst,
-      updateActionBySelectedTerms: (action, termlst) => {
-        action.config.assayCohortTitle = assayCohortTitle;
-        const { assay: assay2, cohort: cohort2 } = selectedProteomeDetails;
-        action.config.proteomeDetails = { assay: assay2, cohort: cohort2 };
-        const cohortSelected = chartsInstance.state.termdbConfig.queries.proteome.assays[assay2].cohorts[cohort2];
-        if (cohortSelected.filter) action.config.filter = buildFilter(cohortSelected.filter);
-        const twlst = termlst.map((term) => {
-          const t = structuredClone(term);
-          t.proteomeDetails = { assay: assay2, cohort: cohort2 };
-          return { term: t, q: { mode: NumericModes.continuous } };
-        });
-        if (twlst.length == 1) {
-          action.config.chartType = "summary";
-          action.config.term = twlst[0];
-          if (cohortSelected.overlayTerm) action.config.term2 = { term: structuredClone(cohortSelected.overlayTerm), q: {} };
-          return;
-        }
-        if (twlst.length == 2) {
-          action.config.chartType = "summary";
-          action.config.term = twlst[0];
-          action.config.term2 = twlst[1];
-          return;
-        }
-        action.config.chartType = "hierCluster";
-        action.config.dataType = "proteomeAbundance";
-        action.config.termgroups = [{ name: "Protein Abundance Cluster", lst: twlst, type: "hierCluster" }];
-      }
-    };
-    chartsInstance.dom.tip.clear();
-    chartsInstance.showTree_selectlst(chart);
-  });
-  syncLaunchButtonState();
-}
-function buildFilter(filterConfig) {
-  if (!filterConfig) return;
-  const lst = [];
-  for (const filterTvs of filterConfig) {
-    lst.push({
-      type: "tvs",
-      tvs: filterTvs
-    });
-  }
-  return {
-    type: "tvslst",
-    in: true,
-    join: lst.length > 1 ? "and" : "",
-    lst
-  };
-}
-
-export {
-  renderAssayAndCohortRadios,
-  makeChartBtnMenu
-};
-//# sourceMappingURL=chunk-22KWZOCN.js.map

package/dist/chunk-22KWZOCN.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../plots/proteomeAbundance.js"],
-  "sourcesContent": ["import { NumericModes } from '#shared/terms.js'\n\nexport function renderAssayAndCohortRadios({\n\tholder,\n\tassays,\n\tselectedProteomeDetails,\n\tonChange,\n\tassayTitle = 'Assay Type',\n\tcohortTitle = 'Cohort'\n}) {\n\tconst assayEntries = Object.entries(assays || {})\n\tif (!assayEntries.length) {\n\t\tholder.append('div').attr('class', 'sja_sharp_border').style('padding', '8px').text('No proteome assays available.')\n\t\treturn {\n\t\t\tgetSelected: () => ({ assay: undefined, cohort: undefined })\n\t\t}\n\t}\n\n\tconst initialProteomeDetails = selectedProteomeDetails || {}\n\n\tconst assayRadioName = `sjpp-proteome-assay-${Math.random().toString().slice(-6)}`\n\tconst cohortRadioName = `sjpp-proteome-cohort-${Math.random().toString().slice(-6)}`\n\n\tlet selectedAssay = assays[initialProteomeDetails.assay] ? initialProteomeDetails.assay : assayEntries[0][0]\n\tlet selectedCohort = initialProteomeDetails.cohort\n\n\tholder.append('div').style('margin', '3px 5px').style('padding', '3px 5px').style('font-weight', 600).text(assayTitle)\n\tconst assayListDiv = holder.append('div').style('margin-bottom', '10px')\n\n\tholder\n\t\t.append('div')\n\t\t.style('margin', '3px 5px')\n\t\t.style('padding', '3px 5px')\n\t\t.style('font-weight', 600)\n\t\t.text(cohortTitle)\n\tconst cohortListDiv = holder.append('div')\n\n\tfor (const [assayKey] of assayEntries) {\n\t\tconst assayLabel = assayListDiv\n\t\t\t.append('label')\n\t\t\t.attr('class', 'sja_sharp_border')\n\t\t\t.style('display', 'block')\n\t\t\t.style('cursor', 'pointer')\n\t\t\t.style('padding', '6px 8px')\n\t\t\t.style('border-radius', '4px')\n\n\t\tassayLabel\n\t\t\t.append('input')\n\t\t\t.attr('type', 'radio')\n\t\t\t.attr('name', assayRadioName)\n\t\t\t.attr('value', assayKey)\n\t\t\t.property('checked', assayKey === selectedAssay)\n\t\t\t.style('margin-right', '6px')\n\t\t\t.on('change', () => {\n\t\t\t\tselectedAssay = assayKey\n\t\t\t\tselectedCohort = undefined\n\t\t\t\trenderCohortOptions()\n\t\t\t\tonChange?.({ assay: selectedAssay, cohort: selectedCohort })\n\t\t\t})\n\t\tassayLabel.append('span').text(assayKey)\n\t}\n\n\trenderCohortOptions()\n\tonChange?.({ assay: selectedAssay, cohort: selectedCohort })\n\n\treturn {\n\t\tgetSelected: () => ({ assay: selectedAssay, cohort: selectedCohort })\n\t}\n\n\tfunction renderCohortOptions() {\n\t\tcohortListDiv.selectAll('*').remove()\n\t\tconst cohorts = Object.keys(assays[selectedAssay]?.cohorts || {})\n\t\tif (!cohorts.length) {\n\t\t\tselectedCohort = undefined\n\t\t\tcohortListDiv\n\t\t\t\t.append('div')\n\t\t\t\t.attr('class', 'sja_sharp_border')\n\t\t\t\t.style('padding', '8px')\n\t\t\t\t.text('No cohorts available.')\n\t\t\treturn\n\t\t}\n\n\t\tif (!selectedCohort || !assays[selectedAssay]?.cohorts?.[selectedCohort]) {\n\t\t\tselectedCohort = cohorts.includes(initialProteomeDetails.cohort) ? initialProteomeDetails.cohort : cohorts[0]\n\t\t}\n\n\t\tfor (const cohortKey of cohorts) {\n\t\t\tconst cohortLabel = cohortListDiv\n\t\t\t\t.append('label')\n\t\t\t\t.attr('class', 'sja_sharp_border')\n\t\t\t\t.style('display', 'block')\n\t\t\t\t.style('cursor', 'pointer')\n\t\t\t\t.style('padding', '6px 8px')\n\t\t\t\t.style('border-radius', '4px')\n\t\t\tcohortLabel\n\t\t\t\t.append('input')\n\t\t\t\t.attr('type', 'radio')\n\t\t\t\t.attr('name', cohortRadioName)\n\t\t\t\t.attr('value', cohortKey)\n\t\t\t\t.property('checked', cohortKey === selectedCohort)\n\t\t\t\t.style('margin-right', '6px')\n\t\t\t\t.on('change', () => {\n\t\t\t\t\tselectedCohort = cohortKey\n\t\t\t\t\tonChange?.({ assay: selectedAssay, cohort: selectedCohort })\n\t\t\t\t})\n\n\t\t\tcohortLabel.append('span').text(cohortKey)\n\t\t}\n\t}\n}\n\nexport function makeChartBtnMenu(holder, chartsInstance) {\n\tchartsInstance.dom.tip.clear()\n\tconst assays = chartsInstance.state.termdbConfig?.queries?.proteome?.assays || {}\n\tconst menuDiv = holder.append('div')\n\n\tlet selectedProteomeDetails\n\tlet launchOption\n\n\tconst syncLaunchButtonState = () => {\n\t\tif (!launchOption) return\n\t\tif (selectedProteomeDetails?.cohort) launchOption.style('opacity', 1).style('pointer-events', 'auto')\n\t\telse launchOption.style('opacity', 0.5).style('pointer-events', 'none')\n\t}\n\n\trenderAssayAndCohortRadios({\n\t\tholder: menuDiv,\n\t\tassays,\n\t\tonChange: proteomeDetails => {\n\t\t\tselectedProteomeDetails = proteomeDetails\n\t\t\tsyncLaunchButtonState()\n\t\t}\n\t})\n\n\tlaunchOption = menuDiv\n\t\t.append('button')\n\t\t.attr('class', 'sjpp_apply_btn sja_filter_tag_btn sja_sharp_border')\n\t\t.style('display', 'block')\n\t\t.style('margin', '10px auto 10px')\n\t\t.text('Select Protein')\n\t\t.on('click', () => {\n\t\t\tif (!selectedProteomeDetails?.cohort) return\n\t\t\tconst { assay, cohort } = selectedProteomeDetails\n\t\t\tconst assayCohortTitle = `${assay}: ${cohort}`\n\t\t\tconst chart = {\n\t\t\t\tlabel: 'Protein Abundance',\n\t\t\t\tchartType: 'proteomeAbundance',\n\t\t\t\tusecase: {\n\t\t\t\t\ttarget: 'proteomeAbundance',\n\t\t\t\t\tdetail: 'term',\n\t\t\t\t\tproteomeDetails: { assay, cohort },\n\t\t\t\t\tlabel: `Assay: ${assay}; Cohort: ${cohort}`\n\t\t\t\t},\n\t\t\t\tprocessSelection: termlst => termlst,\n\t\t\t\tupdateActionBySelectedTerms: (action, termlst) => {\n\t\t\t\t\taction.config.assayCohortTitle = assayCohortTitle\n\t\t\t\t\tconst { assay, cohort } = selectedProteomeDetails\n\t\t\t\t\taction.config.proteomeDetails = { assay, cohort }\n\t\t\t\t\tconst cohortSelected = chartsInstance.state.termdbConfig.queries.proteome.assays[assay].cohorts[cohort]\n\t\t\t\t\tif (cohortSelected.filter) action.config.filter = buildFilter(cohortSelected.filter)\n\t\t\t\t\tconst twlst = termlst.map(term => {\n\t\t\t\t\t\tconst t = structuredClone(term)\n\t\t\t\t\t\tt.proteomeDetails = { assay, cohort }\n\t\t\t\t\t\treturn { term: t, q: { mode: NumericModes.continuous } }\n\t\t\t\t\t})\n\n\t\t\t\t\tif (twlst.length == 1) {\n\t\t\t\t\t\taction.config.chartType = 'summary'\n\t\t\t\t\t\taction.config.term = twlst[0]\n\t\t\t\t\t\tif (cohortSelected.overlayTerm) action.config.term2 = { term: structuredClone(cohortSelected.overlayTerm), q: {} }\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\t\t\t\t\tif (twlst.length == 2) {\n\t\t\t\t\t\taction.config.chartType = 'summary'\n\t\t\t\t\t\taction.config.term = twlst[0]\n\t\t\t\t\t\taction.config.term2 = twlst[1]\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\n\t\t\t\t\taction.config.chartType = 'hierCluster'\n\t\t\t\t\taction.config.dataType = 'proteomeAbundance'\n\t\t\t\t\taction.config.termgroups = [{ name: 'Protein Abundance Cluster', lst: twlst, type: 'hierCluster' }]\n\t\t\t\t}\n\t\t\t}\n\t\t\tchartsInstance.dom.tip.clear()\n\t\t\tchartsInstance.showTree_selectlst(chart)\n\t\t})\n\n\tsyncLaunchButtonState()\n}\n\nfunction buildFilter(filterConfig) {\n\tif (!filterConfig) return\n\tconst lst = []\n\tfor (const filterTvs of filterConfig) {\n\t\tlst.push({\n\t\t\ttype: 'tvs',\n\t\t\ttvs: filterTvs\n\t\t})\n\t}\n\treturn {\n\t\ttype: 'tvslst',\n\t\tin: true,\n\t\tjoin: lst.length > 1 ? 'and' : '',\n\t\tlst\n\t}\n}\n"],
-  "mappings": ";;;;;AAEO,SAAS,2BAA2B;AAAA,EAC1C;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA,aAAa;AAAA,EACb,cAAc;AACf,GAAG;AACF,QAAM,eAAe,OAAO,QAAQ,UAAU,CAAC,CAAC;AAChD,MAAI,CAAC,aAAa,QAAQ;AACzB,WAAO,OAAO,KAAK,EAAE,KAAK,SAAS,kBAAkB,EAAE,MAAM,WAAW,KAAK,EAAE,KAAK,+BAA+B;AACnH,WAAO;AAAA,MACN,aAAa,OAAO,EAAE,OAAO,QAAW,QAAQ,OAAU;AAAA,IAC3D;AAAA,EACD;AAEA,QAAM,yBAAyB,2BAA2B,CAAC;AAE3D,QAAM,iBAAiB,uBAAuB,KAAK,OAAO,EAAE,SAAS,EAAE,MAAM,EAAE,CAAC;AAChF,QAAM,kBAAkB,wBAAwB,KAAK,OAAO,EAAE,SAAS,EAAE,MAAM,EAAE,CAAC;AAElF,MAAI,gBAAgB,OAAO,uBAAuB,KAAK,IAAI,uBAAuB,QAAQ,aAAa,CAAC,EAAE,CAAC;AAC3G,MAAI,iBAAiB,uBAAuB;AAE5C,SAAO,OAAO,KAAK,EAAE,MAAM,UAAU,SAAS,EAAE,MAAM,WAAW,SAAS,EAAE,MAAM,eAAe,GAAG,EAAE,KAAK,UAAU;AACrH,QAAM,eAAe,OAAO,OAAO,KAAK,EAAE,MAAM,iBAAiB,MAAM;AAEvE,SACE,OAAO,KAAK,EACZ,MAAM,UAAU,SAAS,EACzB,MAAM,WAAW,SAAS,EAC1B,MAAM,eAAe,GAAG,EACxB,KAAK,WAAW;AAClB,QAAM,gBAAgB,OAAO,OAAO,KAAK;AAEzC,aAAW,CAAC,QAAQ,KAAK,cAAc;AACtC,UAAM,aAAa,aACjB,OAAO,OAAO,EACd,KAAK,SAAS,kBAAkB,EAChC,MAAM,WAAW,OAAO,EACxB,MAAM,UAAU,SAAS,EACzB,MAAM,WAAW,SAAS,EAC1B,MAAM,iBAAiB,KAAK;AAE9B,eACE,OAAO,OAAO,EACd,KAAK,QAAQ,OAAO,EACpB,KAAK,QAAQ,cAAc,EAC3B,KAAK,SAAS,QAAQ,EACtB,SAAS,WAAW,aAAa,aAAa,EAC9C,MAAM,gBAAgB,KAAK,EAC3B,GAAG,UAAU,MAAM;AACnB,sBAAgB;AAChB,uBAAiB;AACjB,0BAAoB;AACpB,iBAAW,EAAE,OAAO,eAAe,QAAQ,eAAe,CAAC;AAAA,IAC5D,CAAC;AACF,eAAW,OAAO,MAAM,EAAE,KAAK,QAAQ;AAAA,EACxC;AAEA,sBAAoB;AACpB,aAAW,EAAE,OAAO,eAAe,QAAQ,eAAe,CAAC;AAE3D,SAAO;AAAA,IACN,aAAa,OAAO,EAAE,OAAO,eAAe,QAAQ,eAAe;AAAA,EACpE;AAEA,WAAS,sBAAsB;AAC9B,kBAAc,UAAU,GAAG,EAAE,OAAO;AACpC,UAAM,UAAU,OAAO,KAAK,OAAO,aAAa,GAAG,WAAW,CAAC,CAAC;AAChE,QAAI,CAAC,QAAQ,QAAQ;AACpB,uBAAiB;AACjB,oBACE,OAAO,KAAK,EACZ,KAAK,SAAS,kBAAkB,EAChC,MAAM,WAAW,KAAK,EACtB,KAAK,uBAAuB;AAC9B;AAAA,IACD;AAEA,QAAI,CAAC,kBAAkB,CAAC,OAAO,aAAa,GAAG,UAAU,cAAc,GAAG;AACzE,uBAAiB,QAAQ,SAAS,uBAAuB,MAAM,IAAI,uBAAuB,SAAS,QAAQ,CAAC;AAAA,IAC7G;AAEA,eAAW,aAAa,SAAS;AAChC,YAAM,cAAc,cAClB,OAAO,OAAO,EACd,KAAK,SAAS,kBAAkB,EAChC,MAAM,WAAW,OAAO,EACxB,MAAM,UAAU,SAAS,EACzB,MAAM,WAAW,SAAS,EAC1B,MAAM,iBAAiB,KAAK;AAC9B,kBACE,OAAO,OAAO,EACd,KAAK,QAAQ,OAAO,EACpB,KAAK,QAAQ,eAAe,EAC5B,KAAK,SAAS,SAAS,EACvB,SAAS,WAAW,cAAc,cAAc,EAChD,MAAM,gBAAgB,KAAK,EAC3B,GAAG,UAAU,MAAM;AACnB,yBAAiB;AACjB,mBAAW,EAAE,OAAO,eAAe,QAAQ,eAAe,CAAC;AAAA,MAC5D,CAAC;AAEF,kBAAY,OAAO,MAAM,EAAE,KAAK,SAAS;AAAA,IAC1C;AAAA,EACD;AACD;AAEO,SAAS,iBAAiB,QAAQ,gBAAgB;AACxD,iBAAe,IAAI,IAAI,MAAM;AAC7B,QAAM,SAAS,eAAe,MAAM,cAAc,SAAS,UAAU,UAAU,CAAC;AAChF,QAAM,UAAU,OAAO,OAAO,KAAK;AAEnC,MAAI;AACJ,MAAI;AAEJ,QAAM,wBAAwB,MAAM;AACnC,QAAI,CAAC,aAAc;AACnB,QAAI,yBAAyB,OAAQ,cAAa,MAAM,WAAW,CAAC,EAAE,MAAM,kBAAkB,MAAM;AAAA,QAC/F,cAAa,MAAM,WAAW,GAAG,EAAE,MAAM,kBAAkB,MAAM;AAAA,EACvE;AAEA,6BAA2B;AAAA,IAC1B,QAAQ;AAAA,IACR;AAAA,IACA,UAAU,qBAAmB;AAC5B,gCAA0B;AAC1B,4BAAsB;AAAA,IACvB;AAAA,EACD,CAAC;AAED,iBAAe,QACb,OAAO,QAAQ,EACf,KAAK,SAAS,oDAAoD,EAClE,MAAM,WAAW,OAAO,EACxB,MAAM,UAAU,gBAAgB,EAChC,KAAK,gBAAgB,EACrB,GAAG,SAAS,MAAM;AAClB,QAAI,CAAC,yBAAyB,OAAQ;AACtC,UAAM,EAAE,OAAO,OAAO,IAAI;AAC1B,UAAM,mBAAmB,GAAG,KAAK,KAAK,MAAM;AAC5C,UAAM,QAAQ;AAAA,MACb,OAAO;AAAA,MACP,WAAW;AAAA,MACX,SAAS;AAAA,QACR,QAAQ;AAAA,QACR,QAAQ;AAAA,QACR,iBAAiB,EAAE,OAAO,OAAO;AAAA,QACjC,OAAO,UAAU,KAAK,aAAa,MAAM;AAAA,MAC1C;AAAA,MACA,kBAAkB,aAAW;AAAA,MAC7B,6BAA6B,CAAC,QAAQ,YAAY;AACjD,eAAO,OAAO,mBAAmB;AACjC,cAAM,EAAE,OAAAA,QAAO,QAAAC,QAAO,IAAI;AAC1B,eAAO,OAAO,kBAAkB,EAAE,OAAAD,QAAO,QAAAC,QAAO;AAChD,cAAM,iBAAiB,eAAe,MAAM,aAAa,QAAQ,SAAS,OAAOD,MAAK,EAAE,QAAQC,OAAM;AACtG,YAAI,eAAe,OAAQ,QAAO,OAAO,SAAS,YAAY,eAAe,MAAM;AACnF,cAAM,QAAQ,QAAQ,IAAI,UAAQ;AACjC,gBAAM,IAAI,gBAAgB,IAAI;AAC9B,YAAE,kBAAkB,EAAE,OAAAD,QAAO,QAAAC,QAAO;AACpC,iBAAO,EAAE,MAAM,GAAG,GAAG,EAAE,MAAM,aAAa,WAAW,EAAE;AAAA,QACxD,CAAC;AAED,YAAI,MAAM,UAAU,GAAG;AACtB,iBAAO,OAAO,YAAY;AAC1B,iBAAO,OAAO,OAAO,MAAM,CAAC;AAC5B,cAAI,eAAe,YAAa,QAAO,OAAO,QAAQ,EAAE,MAAM,gBAAgB,eAAe,WAAW,GAAG,GAAG,CAAC,EAAE;AACjH;AAAA,QACD;AACA,YAAI,MAAM,UAAU,GAAG;AACtB,iBAAO,OAAO,YAAY;AAC1B,iBAAO,OAAO,OAAO,MAAM,CAAC;AAC5B,iBAAO,OAAO,QAAQ,MAAM,CAAC;AAC7B;AAAA,QACD;AAEA,eAAO,OAAO,YAAY;AAC1B,eAAO,OAAO,WAAW;AACzB,eAAO,OAAO,aAAa,CAAC,EAAE,MAAM,6BAA6B,KAAK,OAAO,MAAM,cAAc,CAAC;AAAA,MACnG;AAAA,IACD;AACA,mBAAe,IAAI,IAAI,MAAM;AAC7B,mBAAe,mBAAmB,KAAK;AAAA,EACxC,CAAC;AAEF,wBAAsB;AACvB;AAEA,SAAS,YAAY,cAAc;AAClC,MAAI,CAAC,aAAc;AACnB,QAAM,MAAM,CAAC;AACb,aAAW,aAAa,cAAc;AACrC,QAAI,KAAK;AAAA,MACR,MAAM;AAAA,MACN,KAAK;AAAA,IACN,CAAC;AAAA,EACF;AACA,SAAO;AAAA,IACN,MAAM;AAAA,IACN,IAAI;AAAA,IACJ,MAAM,IAAI,SAAS,IAAI,QAAQ;AAAA,IAC/B;AAAA,EACD;AACD;",
-  "names": ["assay", "cohort"]
-}

package/dist/chunk-2NQ4TM74.js

@@ -1,48 +0,0 @@
-import {
-  addGeneSearchbox,
-  getSCGEunit
-} from "./chunk-XZZLEHWC.js";
-import {
-  Menu
-} from "./chunk-2SRMRC6L.js";
-import {
-  SINGLECELL_GENE_EXPRESSION
-} from "./chunk-2UWHV2SB.js";
-
-// termdb/handlers/singleCellGeneExpression.ts
-var SearchHandler = class {
-  init(opts) {
-    this.validateOpts(opts);
-    this.callback = opts.callback;
-    this.app = opts.app;
-    const holder = opts.holder.append("div").style("padding", "10px 0px");
-    const geneSearch = addGeneSearchbox({
-      tip: new Menu({ padding: "0px" }),
-      genome: opts.genomeObj,
-      row: holder,
-      searchOnly: "gene",
-      callback: () => this.selectGene(geneSearch.geneSymbol, opts.usecase.specialCase.config.sample)
-    });
-  }
-  async selectGene(gene, sample) {
-    if (!gene) throw new Error("No gene selected");
-    const unit = getSCGEunit(this.app.vocabApi);
-    const name = `${gene} ${unit}`;
-    this.callback({ gene, name, type: SINGLECELL_GENE_EXPRESSION, sample });
-  }
-  validateOpts(opts) {
-    if (opts.callback == null) throw new Error("callback is required");
-    if (opts.app == null) throw new Error("app is required");
-    if (opts.holder == null) throw new Error("holder is required");
-    if (opts.genomeObj == null) throw new Error("genomeObj is required");
-    if (opts.usecase == null) throw new Error("usecase is required");
-    if (!opts.usecase?.specialCase?.config?.sample) {
-      throw new Error("usecase.specialCase.config.sample is required for singleCellGeneExpression handler");
-    }
-  }
-};
-
-export {
-  SearchHandler
-};
-//# sourceMappingURL=chunk-2NQ4TM74.js.map

package/dist/chunk-2NQ4TM74.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../termdb/handlers/singleCellGeneExpression.ts"],
-  "sourcesContent": ["import { Menu, addGeneSearchbox } from '#dom'\nimport type { AppApi } from '#rx'\nimport { SINGLECELL_GENE_EXPRESSION } from '#shared/terms.js'\nimport { getSCGEunit } from '#tw/singleCellGeneExpression'\nimport type { SearchHandlerOpts } from '../TermTypeSearch.js'\n\nexport class SearchHandler {\n\tcallback?: (arg0: { gene: string; name: string; type: string; sample: object }) => void\n\tapp?: AppApi\n\n\tinit(opts: SearchHandlerOpts) {\n\t\tthis.validateOpts(opts)\n\t\tthis.callback = opts.callback\n\t\tthis.app = opts.app\n\t\tconst holder = opts.holder.append('div').style('padding', '10px 0px')\n\t\tconst geneSearch = addGeneSearchbox({\n\t\t\ttip: new Menu({ padding: '0px' }),\n\t\t\tgenome: opts.genomeObj,\n\t\t\trow: holder,\n\t\t\tsearchOnly: 'gene',\n\t\t\tcallback: () => this.selectGene(geneSearch.geneSymbol, opts.usecase.specialCase.config.sample)\n\t\t})\n\t}\n\n\tasync selectGene(gene: string | undefined, sample: any) {\n\t\tif (!gene) throw new Error('No gene selected')\n\t\tconst unit = getSCGEunit(this.app!.vocabApi)\n\t\tconst name = `${gene} ${unit}`\n\t\tthis.callback!({ gene, name, type: SINGLECELL_GENE_EXPRESSION, sample })\n\t}\n\n\tvalidateOpts(opts) {\n\t\tif (opts.callback == null) throw new Error('callback is required')\n\t\tif (opts.app == null) throw new Error('app is required')\n\t\tif (opts.holder == null) throw new Error('holder is required')\n\t\tif (opts.genomeObj == null) throw new Error('genomeObj is required')\n\t\tif (opts.usecase == null) throw new Error('usecase is required')\n\t\tif (!opts.usecase?.specialCase?.config?.sample) {\n\t\t\tthrow new Error('usecase.specialCase.config.sample is required for singleCellGeneExpression handler')\n\t\t}\n\t}\n}\n"],
-  "mappings": ";;;;;;;;;;;;AAMO,IAAM,gBAAN,MAAoB;AAAA,EAI1B,KAAK,MAAyB;AAC7B,SAAK,aAAa,IAAI;AACtB,SAAK,WAAW,KAAK;AACrB,SAAK,MAAM,KAAK;AAChB,UAAM,SAAS,KAAK,OAAO,OAAO,KAAK,EAAE,MAAM,WAAW,UAAU;AACpE,UAAM,aAAa,iBAAiB;AAAA,MACnC,KAAK,IAAI,KAAK,EAAE,SAAS,MAAM,CAAC;AAAA,MAChC,QAAQ,KAAK;AAAA,MACb,KAAK;AAAA,MACL,YAAY;AAAA,MACZ,UAAU,MAAM,KAAK,WAAW,WAAW,YAAY,KAAK,QAAQ,YAAY,OAAO,MAAM;AAAA,IAC9F,CAAC;AAAA,EACF;AAAA,EAEA,MAAM,WAAW,MAA0B,QAAa;AACvD,QAAI,CAAC,KAAM,OAAM,IAAI,MAAM,kBAAkB;AAC7C,UAAM,OAAO,YAAY,KAAK,IAAK,QAAQ;AAC3C,UAAM,OAAO,GAAG,IAAI,IAAI,IAAI;AAC5B,SAAK,SAAU,EAAE,MAAM,MAAM,MAAM,4BAA4B,OAAO,CAAC;AAAA,EACxE;AAAA,EAEA,aAAa,MAAM;AAClB,QAAI,KAAK,YAAY,KAAM,OAAM,IAAI,MAAM,sBAAsB;AACjE,QAAI,KAAK,OAAO,KAAM,OAAM,IAAI,MAAM,iBAAiB;AACvD,QAAI,KAAK,UAAU,KAAM,OAAM,IAAI,MAAM,oBAAoB;AAC7D,QAAI,KAAK,aAAa,KAAM,OAAM,IAAI,MAAM,uBAAuB;AACnE,QAAI,KAAK,WAAW,KAAM,OAAM,IAAI,MAAM,qBAAqB;AAC/D,QAAI,CAAC,KAAK,SAAS,aAAa,QAAQ,QAAQ;AAC/C,YAAM,IAAI,MAAM,oFAAoF;AAAA,IACrG;AAAA,EACD;AACD;",
-  "names": []
-}

package/dist/chunk-2SRMRC6L.js

@@ -1,421 +0,0 @@
-import {
-  select_default
-} from "./chunk-NDWTN4U5.js";
-
-// src/app.observer.js
-var clickableSjClasses = [
-  "sja_menuoption",
-  "sja_clb",
-  "sja_clbtext",
-  "sja_clbtext2",
-  "sjpp-dslabel",
-  "sjpp-active-tiny-button",
-  "sja_inset_a",
-  "sjpp-matrix-label",
-  "sjpp-matrix-divide-by-label",
-  "sjpp-matrix-legend-g"
-];
-var svgClickable = /* @__PURE__ */ new Set([
-  /*'text' /*, 'rect'*/
-]);
-var targetTagNames = /* @__PURE__ */ new Set(["DIV", "SPAN", "TEXT", "LABEL", "g", ...[...svgClickable]]);
-var renderWait = 500;
-var observedElems = /* @__PURE__ */ new WeakSet();
-function observeElem(elem) {
-  if (window.location.pathname === "/puppet.html") return;
-  if (observedElems.has(elem)) return;
-  observedElems.add(elem);
-  observer.observe(elem, { childList: true, subtree: true });
-}
-var observer = new MutationObserver(function(mutationsList, observer2) {
-  const relevantElems = /* @__PURE__ */ new Set();
-  for (const mutation of mutationsList) {
-    for (const elem of mutation.addedNodes) {
-      if (elem.nodeType === Node.ELEMENT_NODE) {
-        if (!targetTagNames.has(elem.tagName) || elem.tabIndex !== -1) continue;
-        relevantElems.add(elem);
-      }
-    }
-  }
-  if (!relevantElems.size) return;
-  setTimeout(() => {
-    for (const elem of relevantElems) {
-      if (elem.getAttribute("tabindex") !== null) continue;
-      const selem = select_default(elem);
-      if (!selem.on("click") && !svgClickable.has(elem.tagName) && !clickableSjClasses.find((cls) => elem.classList?.contains(cls)))
-        continue;
-      selem.attr("tabindex", 0).on("keyup.root_observer", (event2) => {
-        if (event2.key == "Enter") {
-          const box = event2.target.getBoundingClientRect();
-          const clientX = box.x + 0.5 * box.width;
-          const clientY = box.y + box.height;
-          event2.target.dispatchEvent(new MouseEvent("mousedown", { bubbles: true, clientX, clientY }));
-          event2.target.dispatchEvent(new MouseEvent("mouseup", { bubbles: true, clientX, clientY }));
-          event2.target.dispatchEvent(new MouseEvent("click", { bubbles: true, clientX, clientY }));
-        }
-      });
-    }
-    relevantElems.clear();
-  }, renderWait);
-});
-
-// common/globals.js
-var base_zindex = 100;
-function get_base_zindex() {
-  return base_zindex;
-}
-function set_base_zindex(i) {
-  base_zindex = i;
-}
-
-// dom/menu.js
-var focusableSelector = `a[href], button, input, textarea, select, details, [tabindex]:not([tabindex="-1"]), ` + clickableSjClasses.map((c) => `.${c}`).join(",");
-var showMenuTriggers = /* @__PURE__ */ new Set([
-  /*'mousemove',*/
-  "mousedown",
-  "mouseup",
-  "click"
-]);
-var urlpath = window.location.pathname;
-var isTestPage = urlpath.includes("testrun.html") || urlpath.includes("puppet.html");
-var Menu = class {
-  constructor(arg = {}) {
-    this.typename = Math.random().toString();
-    const body = select_default(document.body);
-    this.d = body.append("div").attr("class", "sja_menu_div").attr("data-testid", "sjpp-menu-div").style("display", "none").style("position", "absolute").style("background-color", "white").on("mousedown.menu" + this.typename, (event2) => {
-      const t = select_default(event2.target);
-      if (
-        /*** 
-        	NOTE on interactive menu elements: 
-        	Any menu element (input, button, etc) that has event listeners
-          is expected to handle that event, including possibly closing any
-          associated menus, and thus no need to propagate the mousedown event 
-        	to the document body
-        ***/
-        t.on("mousedown") || t.on("click") || // also assume that the following elements have event listeners by default,
-        // so same logic of not wanting to propagate the event to the body
-        ["INPUT", "SELECT", "TEXTAREA"].includes(event2.target.tagName.toUpperCase())
-      ) {
-        event2.stopPropagation();
-      }
-    }).on("keyup", (event2) => {
-      if (event2.key == "Escape") this.hide();
-    });
-    this.dnode = this.d.node();
-    this.setRelatedMenus(arg);
-    body.on("mousedown.menu" + this.typename, (event2) => {
-      if (this.dnode.contains(event2.target)) return;
-      if (event2.target.parent_menu === this.dnode) return;
-      if (this.dnode.ancestor_menus?.includes(this.dnode)) return;
-      const menu = event2.target.closest(".sja_menu_div");
-      if (menu && (menu.parent_menu === this.dnode || menu.ancestor_menus?.includes(this.dnode))) return;
-      this.hide();
-    });
-    const base_zindex2 = get_base_zindex();
-    if (base_zindex2) {
-      this.d.style("z-index", base_zindex2 + 1);
-    }
-    this.d.style("padding", "padding" in arg ? arg.padding : "10px");
-    if (arg.border) {
-      this.d.style("border", arg.border);
-    } else {
-      this.d.style("box-shadow", "0px 2px 4px 1px #999");
-    }
-    this.offsetX = Number.isInteger(arg.offsetX) ? arg.offsetX : 20;
-    this.offsetY = Number.isInteger(arg.offsetY) ? arg.offsetY : 20;
-    this.hideXmute = Number.isInteger(arg.hideXmute) ? arg.hideXmute : 0;
-    this.hideYmute = Number.isInteger(arg.hideYmute) ? arg.hideYmute : 0;
-    this.prevX = -1;
-    this.prevY = -1;
-    this.clearSelector = arg.clearSelector;
-    if (arg.onHide) this.onHide = arg.onHide;
-  }
-  setRelatedMenus(arg) {
-    if (Object.values(this.d._groups[0]).length) this.dnode.parent_menu = arg.parent_menu;
-    this.dnode.ancestor_menus = arg.ancestor_menus || [];
-    if (this.dnode.parent_menu && !this.dnode.ancestor_menus.includes(this.dnode.parent_menu)) {
-      this.dnode.ancestor_menus.push(this.dnode.parent_menu);
-    }
-    const ancestor_menus = this.dnode.ancestor_menus.slice(0);
-    while (ancestor_menus.length) {
-      const m = ancestor_menus.pop();
-      if (!m) continue;
-      if (m.parent_menu && !this.dnode.ancestor_menus.includes(m.parent_menu)) {
-        this.dnode.ancestor_menus.push(m.parent_menu);
-      }
-      if (m.ancestor_menus) {
-        for (const mm of m.ancestor_menus) {
-          if (!this.dnode.ancestor_menus.includes(mm)) this.dnode.ancestor_menus.push(mm);
-        }
-      }
-    }
-  }
-  clear() {
-    if (this.clearSelector) {
-      const elem = this.d.select(this.clearSelector);
-      elem.selectAll("*").remove();
-      elem.node().replaceChildren();
-    } else {
-      this.d.selectAll("*").remove();
-      this.dnode.replaceChildren();
-    }
-    return this;
-  }
-  /*
-   To note: if shift and scroll are true, shift sets x & y.
-   Set shift to false to use scroll
-    
-    _elem: the element for which the menu was launched, optional
-  */
-  show(_x, _y, shift = true, down = true, scroll = true, elem = null) {
-    let x = _x;
-    let y = _y;
-    this.prevX = _x;
-    this.prevY = _y;
-    document.body.appendChild(this.dnode);
-    this.d.style("display", "block");
-    if (scroll) {
-      x = x + window.scrollX;
-      y = y + window.scrollY;
-    }
-    if (shift) {
-      x = x + this.offsetX;
-      y = y + this.offsetY;
-    }
-    const width = window.innerWidth;
-    const height = window.innerHeight;
-    const middlex = width / 2;
-    const middley = height / 2;
-    const p = this.dnode.getBoundingClientRect();
-    if (width - x < middlex && x + p.width > width) this.d.style("left", null).style("right", width - x + "px");
-    else this.d.style("left", x + "px").style("right", null);
-    if (!down && height - y < middley && y - window.scrollY > p.height) {
-      this.d.style("top", `${y - p.height}px`).style("bottom", null);
-    } else this.d.style("top", y + "px").style("bottom", null);
-    this.d.transition().style("opacity", 1);
-    if (elem) this.setTabNavigation(elem);
-    else if (showMenuTriggers.has(window.event?.type)) this.setTabNavigation(window.event.target);
-    if (elem) this.stickyPosition(elem);
-    return this;
-  }
-  // simplified alternative to show(), with less arguments
-  // _x, _y: desired position in the client window
-  // opts{}:
-  //   elem: the element for which the menu was launched, will get focus when tabbing back from the menu
-  show2(_x, _y, opts = {}) {
-    let x = _x;
-    let y = _y;
-    this.prevX = _x;
-    this.prevY = _y;
-    document.body.appendChild(this.dnode);
-    this.d.style("display", "block");
-    x = x + window.scrollX + this.offsetX;
-    y = y + window.scrollY + this.offsetY;
-    const width = window.innerWidth;
-    const height = window.innerHeight;
-    const middlex = width / 2;
-    const middley = height / 2;
-    const p = this.dnode.getBoundingClientRect();
-    if (x + p.width > width) this.d.style("left", "").style("right", "5px");
-    else this.d.style("left", x + "px").style("right", "");
-    this.d.style("top", y + "px").style("bottom", "");
-    this.d.transition().style("opacity", 1);
-    if (opts.elem) this.setTabNavigation(opts.elem);
-    return this;
-  }
-  // opts{}: can supply offsetX and offsetY
-  // necessary because .showunder() uses .show(shift=false), which
-  // ignores offsetY in the constructor option
-  showunder(elem, _opts = {}) {
-    const opts = Object.assign({ offsetX: 0, offsetY: 0 }, _opts);
-    const p = elem.getBoundingClientRect();
-    const x = p.left + window.scrollX + opts.offsetX;
-    const y = p.top + p.height + window.scrollY + 5 + opts.offsetY;
-    return this.show(x, y, false, true, false, elem);
-  }
-  async setTabNavigation(elem, numTries = 0) {
-    const clickableElems = [...this.d.node().querySelectorAll(focusableSelector)].filter((elem2) => elem2.checkVisibility());
-    if (!clickableElems.length) {
-      if (numTries < 30) setTimeout(() => this.setTabNavigation(elem, numTries++), 100);
-      return;
-    }
-    const firstFocusableChildElem = select_default(clickableElems[0]);
-    for (const elem2 of clickableElems) {
-      const s = select_default(elem2);
-      if (!elem2.getAttribute("tabindex")) s.attr("tabindex", 0);
-      if (!s.on("keyup"))
-        setTimeout(() => {
-          s.on("keyup.menu_tab_nav", (event2) => {
-            if (event2.key == "Enter") elem2.click();
-          });
-        }, renderWait);
-    }
-    let lastTabbedTime = Date.now();
-    function setLastTabbedTime(event2) {
-      if (event2.key == "Tab" && event2.shiftKey) lastTabbedTime = Date.now();
-    }
-    function focusOnLauncherElem(tip, launcherElem) {
-      if (Date.now() - lastTabbedTime > tabWait) return;
-      if (document.activeElement === document.body || tip.dnode.contains(document.activeElement) || event.target?.closest(".sja_menu_div")?.ancestor_menus?.includes(this.dnode))
-        return;
-      tip.hide();
-      launcherElem.focus();
-    }
-    const tabWait = 100;
-    firstFocusableChildElem.on("keydown.menu_tab_nav", setLastTabbedTime).on("blur.menu_tab_nav", () => focusOnLauncherElem(this, elem));
-    const searchElem = elem.type === "search" ? elem : elem.querySelector(`input[type='search']`);
-    if (!searchElem) {
-      setTimeout(() => (clickableElems.find(priorityFocusElem) || clickableElems[0]).focus(), renderWait);
-    } else if (searchElem) {
-      const search = select_default(searchElem);
-      if (!search.on("keyup")) {
-        search.on("keyup", (event2) => {
-          if (!event2.key.startsWith("Arrow")) return;
-          const clickableElems2 = [...this.d.node().querySelectorAll(focusableSelector)].filter(
-            (elem2) => elem2.checkVisibility()
-          );
-          if (!clickableElems2.length) return;
-          if (event2.key == "ArrowDown") {
-            clickableElems2[0].focus();
-            select_default(clickableElems2[0]).on("keydown.menu_tab_nav", setLastTabbedTime).on("blur.menu_tab_nav", () => focusOnLauncherElem(this, searchElem));
-          }
-        });
-      }
-    }
-  }
-  showunderoffset(dom) {
-    const p = dom.getBoundingClientRect();
-    const y = p.top + p.height + window.scrollY + 5;
-    return this.show(p.left, y, true, true, false);
-  }
-  // stickyPosition() prevents the menu from being scrolled away (above or below) the clicked element,
-  // an issue seen when the clicked element is nested inside a sticky-positioned div such as
-  // the MASS nav header, whereas the menu div that's attached to the body will scroll freely past the
-  // 'stuck' clicked element
-  stickyPosition(elem, _opts = {}) {
-    if (!window.event || window.event.type != "click" || !elem.__data__?.stickyAncestor) return;
-    const top = this.d.style("top");
-    if (!top.endsWith("px")) return;
-    const { height: elemHeight } = elem.getBoundingClientRect();
-    const scrollStartY = window.scrollY;
-    const yPos = Number(top.replace("px", ""));
-    let startRatio;
-    const observerOptions = {
-      // Use a negative margin equal to the 'top' CSS value to trigger
-      // the callback when the element reaches its sticky position.
-      rootMargin: "-0.1px 0px 0px 0px",
-      // Use a small negative value like -0.1px or -1px
-      threshold: [
-        /*0.7, 0.8,*/
-        0.95,
-        1
-      ]
-      // Triggers when the target is xx% visible, when it starts getting stuck or moving again
-    };
-    this.stickyObserver = new IntersectionObserver(([entry]) => {
-      if (startRatio === void 0) startRatio = entry.intersectionRatio;
-      if (entry.intersectionRatio >= 1) {
-        const yAdjust = startRatio >= 1 ? 0 : window.scrollY - scrollStartY + entry.intersectionRect.y;
-        this.d.style("top", `${yPos + yAdjust}px`).style("position", "absolute");
-      } else if (entry.intersectionRatio < 0.95) {
-        if (startRatio < 0.95) return;
-        this.d.style("top", `${yPos + window.scrollY - scrollStartY - entry.intersectionRect.height}px`).style("position", "absolute");
-      } else {
-        this.d.style("top", `${elem.getBoundingClientRect().y + elemHeight}px`).style("position", "fixed");
-      }
-    }, observerOptions);
-    this.stickyObserver.observe(elem.__data__.stickyAncestor);
-  }
-  // this hide() method may be overriden with a custom method by getCustomApi(overrides)
-  hide(event2) {
-    if (event2) {
-      if (Math.abs(this.prevX - event2.clientX) < this.hideXmute && Math.abs(this.prevY - event2.clientY) < this.hideYmute)
-        return;
-    }
-    if (!this.fadeTimeout) this.d.style("display", "none").style("opacity", 0);
-    if (this.onHide) this.onHide();
-    this.stopObserver();
-    return this;
-  }
-  fadeout() {
-    this.stopObserver();
-    this.d.transition().style("opacity", 0).on("end", () => this.d.style("display", "none"));
-    return this;
-  }
-  confirm({ html, timeout }) {
-    this.d.selectAll("*").remove();
-    this.d.append("div").style("padding", "5px").html(html);
-    if (timeout)
-      this.fadeTimeout = setTimeout(() => {
-        this.fadeout();
-        delete this.fadeTimeout;
-      }, 3e3);
-  }
-  toggle() {
-    if (!this.hidden) {
-      this.hide();
-      this.hidden = true;
-    } else {
-      this.d.style("opacity", 1).style("display", "block");
-      this.hidden = false;
-    }
-    return this;
-  }
-  /*
-  	Create a custom instance API with method and/or property overrides;
-  	this will simplify sharing of the same tip instance among different
-  	components/code, such as a chart edit menu with an embedded termsetting
-  	edit menu, where the tip.hide() can be shared but tip.clear() will be
-  	applied only to a specific div in the overall menu div
-  	
-  	Example usage: 
-  	const tip = new Menu()
-  	const subsection = tip.d.append('div')
-  	const customTipApi = tip.getCustomApi({
-  		d: subsection, // expose only a subsection of the whole tip.d,
-  		show: () => {
-  			subsection.style('display', 'block')
-  		},
-  		hide: () => {
-  			subsection.style('display', 'none')
-  		},
-  		clear: () => {
-  			subsection.selectAll('*').remove() // clear only the subsection
-  			return customTipApi
-  		}
-  	})
-  */
-  getCustomApi(overrides = {}) {
-    const api = Object.create(this);
-    Object.assign(api, overrides);
-    return api;
-  }
-  stopObserver() {
-    if (!this.stickyObserver) return;
-    this.stickyObserver.disconnect();
-    delete this.stickyObserver;
-  }
-  destroy() {
-    this.stopObserver();
-    this.d.remove();
-  }
-};
-function priorityFocusElem(elem, i) {
-  return elem.tagName == "INPUT" && elem.type == "search";
-}
-function getAncestorWithComputedStyle(elem, key, values) {
-  if (isTestPage || !elem || !values.size) return;
-  const style = window.getComputedStyle(elem);
-  if (values.has(style[key])) return elem;
-  if (elem.tagName == "BODY" || elem.classList?.contains("sja_root_holder") || elem.classList?.contains("sja_menu_div") && elem.parentNode === document.body)
-    return;
-  return elem.parentNode ? getAncestorWithComputedStyle(elem.parentNode, key, values) : void 0;
-}
-
-export {
-  set_base_zindex,
-  observeElem,
-  Menu,
-  getAncestorWithComputedStyle
-};
-//# sourceMappingURL=chunk-2SRMRC6L.js.map