@rcsb/rcsb-saguaro-app 6.3.7-dev-js-seqcoord.19 → 6.3.7-dev-js-seqcoord.21

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (347) hide show
  1. package/build/app.js +1 -1
  2. package/build/constants.js +1 -1
  3. package/build/plot.js +1 -1
  4. package/build/worker.js +1 -1
  5. package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.d.ts +1 -1
  6. package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.d.ts +1 -1
  7. package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.d.ts +1 -1
  8. package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.d.ts +1 -1
  9. package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.d.ts +1 -1
  10. package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.d.ts +1 -1
  11. package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.d.ts +1 -1
  12. package/lib/RcsbCollectTools/DataCollectors/GroupMemberCollector.d.ts +1 -1
  13. package/lib/RcsbCollectTools/DataCollectors/GroupPropertyCollector.d.ts +1 -1
  14. package/lib/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.d.ts +1 -1
  15. package/lib/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.d.ts +1 -1
  16. package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.d.ts +2 -2
  17. package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.d.ts +1 -1
  18. package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js +1 -1
  19. package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js.map +1 -1
  20. package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js +1 -1
  21. package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js.map +1 -1
  22. package/lib/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.d.ts +2 -2
  23. package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.d.ts +1 -1
  24. package/lib/RcsbExport/FeatureType.d.ts +1 -1
  25. package/lib/RcsbExport/FeatureType.js +1 -1
  26. package/lib/RcsbExport/FeatureType.js.map +1 -1
  27. package/lib/RcsbFvExamples/ExternalDataProvider.js +1 -1
  28. package/lib/RcsbFvExamples/ExternalDataProvider.js.map +1 -1
  29. package/lib/RcsbFvExamples/GroupHistogram.js +1 -1
  30. package/lib/RcsbFvExamples/GroupHistogram.js.map +1 -1
  31. package/lib/RcsbFvExamples/InstanceSequenceFv.js +1 -1
  32. package/lib/RcsbFvExamples/InstanceSequenceFv.js.map +1 -1
  33. package/lib/RcsbFvExamples/SequenceIdentityGroupFv.js +1 -1
  34. package/lib/RcsbFvExamples/SequenceIdentityGroupFv.js.map +1 -1
  35. package/lib/RcsbFvExamples/UniprotGroupFv.js +2 -2
  36. package/lib/RcsbFvExamples/UniprotGroupFv.js.map +1 -1
  37. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js +1 -1
  38. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js.map +1 -1
  39. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js +2 -2
  40. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js.map +1 -1
  41. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.d.ts +2 -2
  42. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js +3 -3
  43. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js.map +1 -1
  44. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.d.ts +1 -1
  45. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js +1 -1
  46. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js.map +1 -1
  47. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.d.ts +1 -1
  48. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js +1 -1
  49. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js.map +1 -1
  50. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js +1 -1
  51. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js.map +1 -1
  52. package/lib/RcsbFvWeb/RcsbFvBuilder.d.ts +2 -2
  53. package/lib/RcsbFvWeb/RcsbFvBuilder.js +1 -1
  54. package/lib/RcsbFvWeb/RcsbFvBuilder.js.map +1 -1
  55. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.d.ts +1 -1
  56. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.d.ts +1 -1
  57. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.d.ts +1 -1
  58. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.d.ts +1 -1
  59. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js +2 -2
  60. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js.map +1 -1
  61. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.d.ts +1 -1
  62. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.d.ts +1 -1
  63. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.d.ts +1 -1
  64. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js +1 -1
  65. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js.map +1 -1
  66. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.d.ts +1 -1
  67. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js +1 -1
  68. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js.map +1 -1
  69. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.d.ts +1 -1
  70. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.d.ts +1 -1
  71. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js +1 -1
  72. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js.map +1 -1
  73. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.d.ts +1 -1
  74. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js +2 -2
  75. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js.map +1 -1
  76. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js +2 -2
  77. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js.map +1 -1
  78. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.d.ts +1 -1
  79. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js +1 -1
  80. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js.map +1 -1
  81. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.d.ts +1 -1
  82. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js +2 -2
  83. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js.map +1 -1
  84. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.d.ts +1 -1
  85. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js +2 -2
  86. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js.map +1 -1
  87. package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.d.ts +2 -2
  88. package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js +3 -3
  89. package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js.map +1 -1
  90. package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.d.ts +3 -3
  91. package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js +2 -2
  92. package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js.map +1 -1
  93. package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.d.ts +2 -2
  94. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts +1 -1
  95. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js +1 -1
  96. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js.map +1 -1
  97. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js +2 -2
  98. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js.map +1 -1
  99. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js +1 -1
  100. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js.map +1 -1
  101. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js +1 -1
  102. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js.map +1 -1
  103. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.d.ts +1 -1
  104. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js +2 -2
  105. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js.map +1 -1
  106. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface.d.ts +1 -1
  107. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.js +1 -1
  108. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.js.map +1 -1
  109. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.js +1 -1
  110. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.js.map +1 -1
  111. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.js +1 -1
  112. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.js.map +1 -1
  113. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.js +2 -2
  114. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.js.map +1 -1
  115. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.js +1 -1
  116. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.js.map +1 -1
  117. package/lib/RcsbFvWeb/RcsbFvWorkers/RcsbFvAlignmentCollectorQueue.d.ts +1 -1
  118. package/lib/RcsbGraphQL/RcsbClient.d.ts +2 -2
  119. package/lib/RcsbGraphQL/RcsbCoreQueryInterface.d.ts +1 -1
  120. package/lib/RcsbGraphQL/RcsbQueryAlignment.d.ts +2 -2
  121. package/lib/RcsbGraphQL/RcsbQueryAnnotations.d.ts +2 -2
  122. package/lib/RcsbGraphQL/RcsbQueryAssemblyInterfaces.d.ts +2 -2
  123. package/lib/RcsbGraphQL/RcsbQueryEntryInstances.d.ts +2 -2
  124. package/lib/RcsbGraphQL/RcsbQueryGroup.d.ts +2 -2
  125. package/lib/RcsbGraphQL/RcsbQueryInterfaceInstances.d.ts +2 -2
  126. package/lib/RcsbGraphQL/RcsbQueryMultipleEntityInstances.d.ts +2 -2
  127. package/lib/RcsbGraphQL/RcsbQueryMultipleEntriesProperties.d.ts +2 -2
  128. package/lib/RcsbGraphQL/RcsbQueryMultipleInstanceSequences.d.ts +2 -2
  129. package/lib/RcsbGroupWeb/RcsbGroupBuilder.d.ts +3 -3
  130. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.d.ts +1 -1
  131. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.js +1 -1
  132. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.js.map +1 -1
  133. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartTools.d.ts +2 -2
  134. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartTools.js.map +1 -1
  135. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbGroupChartComponent.d.ts +2 -2
  136. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbGroupChartComponent.js.map +1 -1
  137. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbStatsChartComponent.d.ts +3 -3
  138. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.d.ts +2 -2
  139. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.js +1 -1
  140. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.js.map +1 -1
  141. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupDisplay.d.ts +3 -3
  142. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.d.ts +2 -2
  143. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.js +2 -2
  144. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.js.map +1 -1
  145. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.d.ts +2 -2
  146. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.js +4 -4
  147. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.js.map +1 -1
  148. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.d.ts +3 -3
  149. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.js +2 -2
  150. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.js.map +1 -1
  151. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/RcsbGroupSeacrhQueryComponent.d.ts +2 -2
  152. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/SearchQueryContextManager.d.ts +3 -3
  153. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js +1 -1
  154. package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js.map +1 -1
  155. package/lib/RcsbQueries/QueryCheck.js +1 -1
  156. package/lib/RcsbQueries/QueryCheck.js.map +1 -1
  157. package/lib/RcsbRequest/RcsbRequestClient.d.ts +2 -2
  158. package/lib/RcsbRequest/RcsbRequestClient.js +2 -2
  159. package/lib/RcsbRequest/RcsbRequestClient.js.map +1 -1
  160. package/lib/RcsbRequest/RcsbRequestContextManager.d.ts +5 -5
  161. package/lib/RcsbRequest/RcsbRequestContextManager.js +3 -3
  162. package/lib/RcsbRequest/RcsbRequestContextManager.js.map +1 -1
  163. package/lib/RcsbSeacrh/FacetStore/DepositionGroupFacetStore.d.ts +1 -1
  164. package/lib/RcsbSeacrh/FacetStore/DepositionGroupFacetStore.js +2 -2
  165. package/lib/RcsbSeacrh/FacetStore/DepositionGroupFacetStore.js.map +1 -1
  166. package/lib/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.d.ts +1 -1
  167. package/lib/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.js +2 -2
  168. package/lib/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.js.map +1 -1
  169. package/lib/RcsbSeacrh/FacetStore/FacetMemberInterface.d.ts +1 -1
  170. package/lib/RcsbSeacrh/FacetStore/FacetStoreInterface.d.ts +1 -1
  171. package/lib/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.d.ts +1 -1
  172. package/lib/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.js +2 -2
  173. package/lib/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.js.map +1 -1
  174. package/lib/RcsbSeacrh/FacetStore/SingleFacets.js +2 -2
  175. package/lib/RcsbSeacrh/FacetStore/SingleFacets.js.map +1 -1
  176. package/lib/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.d.ts +1 -1
  177. package/lib/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.js +2 -2
  178. package/lib/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.js.map +1 -1
  179. package/lib/RcsbSeacrh/FacetTools.d.ts +4 -4
  180. package/lib/RcsbSeacrh/SearchQueryTools.d.ts +5 -5
  181. package/lib/RcsbSeacrh/SearchQueryTools.js +3 -3
  182. package/lib/RcsbSeacrh/SearchQueryTools.js.map +1 -1
  183. package/lib/RcsbSeacrh/SearchRequestProperty.d.ts +4 -4
  184. package/lib/RcsbUtils/Groups/GroupGapLessTransformer.d.ts +1 -1
  185. package/lib/RcsbUtils/Groups/GroupProvenanceToAggregationType.d.ts +2 -2
  186. package/lib/RcsbUtils/Groups/GroupProvenanceToAggregationType.js +3 -2
  187. package/lib/RcsbUtils/Groups/GroupProvenanceToAggregationType.js.map +1 -1
  188. package/lib/RcsbUtils/PairwiseAlignmentTools/AlignmentReference.d.ts +1 -1
  189. package/lib/RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder.js +1 -1
  190. package/lib/RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder.js.map +1 -1
  191. package/lib/RcsbUtils/TrackGenerators/BurialFraction.d.ts +1 -1
  192. package/lib/RcsbUtils/TrackGenerators/BurialFraction.js +1 -1
  193. package/lib/RcsbUtils/TrackGenerators/BurialFraction.js.map +1 -1
  194. package/lib/RcsbUtils/TrackGenerators/BuriedResidues.d.ts +1 -1
  195. package/lib/RcsbUtils/TrackGenerators/BuriedResidues.js +1 -1
  196. package/lib/RcsbUtils/TrackGenerators/BuriedResidues.js.map +1 -1
  197. package/lib/RcsbUtils/TrackGenerators/Logo.d.ts +1 -1
  198. package/lib/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.d.ts +1 -1
  199. package/lib/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.js +1 -1
  200. package/lib/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.js.map +1 -1
  201. package/lib/RcsbUtils/Translators/MultipleEntityInstanceTranslate.js +1 -1
  202. package/lib/RcsbUtils/Translators/MultipleEntityInstanceTranslate.js.map +1 -1
  203. package/lib/RcsbUtils/Translators/PolymerEntityInstanceTranslate.d.ts +1 -1
  204. package/lib/RcsbUtils/Translators/PolymerEntityInstanceTranslate.js +2 -2
  205. package/lib/RcsbUtils/Translators/PolymerEntityInstanceTranslate.js.map +1 -1
  206. package/lib/commonjs/RcsbAnnotationConfig/RcsbAnnotationConfig.d.ts +1 -1
  207. package/lib/commonjs/RcsbCollectTools/AlignmentCollector/AlignmentCollector.d.ts +1 -1
  208. package/lib/commonjs/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.d.ts +1 -1
  209. package/lib/commonjs/RcsbCollectTools/AnnotationCollector/AnnotationCollector.d.ts +1 -1
  210. package/lib/commonjs/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.d.ts +1 -1
  211. package/lib/commonjs/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.d.ts +1 -1
  212. package/lib/commonjs/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.d.ts +1 -1
  213. package/lib/commonjs/RcsbCollectTools/DataCollectors/GroupMemberCollector.d.ts +1 -1
  214. package/lib/commonjs/RcsbCollectTools/DataCollectors/GroupPropertyCollector.d.ts +1 -1
  215. package/lib/commonjs/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.d.ts +1 -1
  216. package/lib/commonjs/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.d.ts +1 -1
  217. package/lib/commonjs/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.d.ts +2 -2
  218. package/lib/commonjs/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.d.ts +1 -1
  219. package/lib/commonjs/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js +1 -1
  220. package/lib/commonjs/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js +1 -1
  221. package/lib/commonjs/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.d.ts +2 -2
  222. package/lib/commonjs/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.d.ts +1 -1
  223. package/lib/commonjs/RcsbExport/FeatureType.d.ts +1 -1
  224. package/lib/commonjs/RcsbExport/FeatureType.js +1 -1
  225. package/lib/commonjs/RcsbFvExamples/ExternalDataProvider.js +1 -1
  226. package/lib/commonjs/RcsbFvExamples/GroupHistogram.js +1 -1
  227. package/lib/commonjs/RcsbFvExamples/InstanceSequenceFv.js +1 -1
  228. package/lib/commonjs/RcsbFvExamples/SequenceIdentityGroupFv.js +1 -1
  229. package/lib/commonjs/RcsbFvExamples/UniprotGroupFv.js +2 -2
  230. package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js +1 -1
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  237. package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js +1 -1
  238. package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js +1 -1
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  240. package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder.js +1 -1
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  253. package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.d.ts +1 -1
  254. package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js +1 -1
  255. package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.d.ts +1 -1
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  257. package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js +2 -2
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  259. package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js +1 -1
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  261. package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js +2 -2
  262. package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.d.ts +1 -1
  263. package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js +2 -2
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  270. package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js +1 -1
  271. package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js +2 -2
  272. package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js +1 -1
  273. package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js +1 -1
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  277. package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.js +1 -1
  278. package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.js +1 -1
  279. package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.js +1 -1
  280. package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.js +2 -2
  281. package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.js +1 -1
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  293. package/lib/commonjs/RcsbGraphQL/RcsbQueryMultipleInstanceSequences.d.ts +2 -2
  294. package/lib/commonjs/RcsbGroupWeb/RcsbGroupBuilder.d.ts +3 -3
  295. package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.d.ts +1 -1
  296. package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.js +1 -1
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  320. package/lib/commonjs/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.js +2 -2
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  333. package/lib/commonjs/RcsbUtils/Groups/GroupProvenanceToAggregationType.d.ts +2 -2
  334. package/lib/commonjs/RcsbUtils/Groups/GroupProvenanceToAggregationType.js +3 -2
  335. package/lib/commonjs/RcsbUtils/PairwiseAlignmentTools/AlignmentReference.d.ts +1 -1
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  338. package/lib/commonjs/RcsbUtils/TrackGenerators/BurialFraction.js +1 -1
  339. package/lib/commonjs/RcsbUtils/TrackGenerators/BuriedResidues.d.ts +1 -1
  340. package/lib/commonjs/RcsbUtils/TrackGenerators/BuriedResidues.js +1 -1
  341. package/lib/commonjs/RcsbUtils/TrackGenerators/Logo.d.ts +1 -1
  342. package/lib/commonjs/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.d.ts +1 -1
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  345. package/lib/commonjs/RcsbUtils/Translators/PolymerEntityInstanceTranslate.d.ts +1 -1
  346. package/lib/commonjs/RcsbUtils/Translators/PolymerEntityInstanceTranslate.js +2 -2
  347. package/package.json +3 -3
@@ -1,5 +1,5 @@
1
- import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
2
- import { TagDelimiter } from "@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter";
1
+ import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
+ import { TagDelimiter } from "@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter";
3
3
  export class PolymerEntityInstanceTranslate {
4
4
  constructor(data) {
5
5
  this.instanceAsymToAuth = new Map();
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1
+ {"version":3,"file":"PolymerEntityInstanceTranslate.js","sourceRoot":"","sources":["../../../src/RcsbUtils/Translators/PolymerEntityInstanceTranslate.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,iBAAiB,EAAE,mBAAmB,EAAC,MAAM,6DAA6D,CAAC;AACnH,OAAO,EAAC,YAAY,EAAC,MAAM,iDAAiD,CAAC;AAc7E,MAAM,OAAO,8BAA8B;IASvC,YAAY,IAA2C;QAPtC,uBAAkB,GAAuB,IAAI,GAAG,EAAkB,CAAC;QACnE,uBAAkB,GAAuB,IAAI,GAAG,EAAkB,CAAC;QACnE,yBAAoB,GAAuB,IAAI,GAAG,EAAkB,CAAC;QACrE,iBAAY,GAA4B,IAAI,GAAG,EAAuB,CAAC;QACvE,uBAAkB,GAA8B,IAAI,GAAG,EAAyB,CAAC;QACjF,eAAU,GAAW,MAAM,CAAC;QAGzC,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC;QACpB,IAAI,CAAC,OAAO,CAAC,CAAC,CAAA,EAAE;;YACZ,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,EAAC,CAAC,CAAC,MAAM,CAAC,CAAC;YAC/C,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,EAAC,CAAC,CAAC,MAAM,CAAC,CAAC;YAC/C,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,EAAC,CAAC,CAAC,SAAS,CAAC,CAAC;YAClD,IAAI,CAAC,oBAAoB,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,EAAC,CAAC,CAAC,QAAQ,CAAC,CAAC;YACnD,IAAG,CAAC,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC;gBACjC,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,IAAI,GAAG,EAAU,CAAC,CAAC;YACzD,MAAA,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC,0CAAE,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC;QACrD,CAAC,CAAC,CAAC;IACP,CAAC;IAEM,OAAO;QACV,OAAO,IAAI,CAAC,OAAO,CAAC;IACxB,CAAC;IAEM,qBAAqB,CAAC,EAAU;QACnC,MAAM,OAAO,GAA4B,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACnE,IAAG,OAAO;YACN,OAAO,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACnC,CAAC;IAEM,qBAAqB,CAAC,EAAU;QACnC,OAAO,IAAI,CAAC,oBAAoB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;IAC7C,CAAC;IAEM,mBAAmB,CAAC,EAAU;QACjC,OAAO,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;IAC3C,CAAC;IAEM,mBAAmB,CAAC,EAAU;QACjC,OAAO,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;IAC3C,CAAC;IAEM,kBAAkB,CAAC,MAAa,EAAE,KAAY;QACjD,MAAM,SAAS,GAA0B,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;QAC7E,IAAG,CAAC,SAAS;YACT,OAAO,SAAS,CAAC;aAChB,IAAG,KAAK,GAAG,SAAS,CAAC,MAAM;YAC5B,OAAO,SAAS,CAAC;aAChB,IAAG,SAAS,CAAC,KAAK,GAAC,CAAC,CAAC;YACtB,OAAO,SAAS,CAAC;;YAEjB,OAAO,SAAS,CAAC,KAAK,GAAC,CAAC,CAAC,CAAC;IAClC,CAAC;IAEM,eAAe,CAAC,CAAiC,EAAE,gBAA0C;QAChG,IAAI,CAAC,GAAsC,CAAC,CAAC;QAC7C,IAAG,gBAAgB,CAAC,IAAI,KAAK,iBAAiB,CAAC,WAAW,IAAI,gBAAgB,CAAC,EAAE,EAAE,CAAC;YAChF,MAAM,MAAM,GAAW,gBAAgB,CAAC,OAAO,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;YAChF,IAAI,CAAC,qBAAqB,CAAC,CAAC,EAAC,gBAAgB,CAAC,IAAI,EAAC,gBAAgB,CAAC,EAAE,EAAC,MAAM,CAAC,CAAC;YAC/E,CAAC,CAAC,SAAS,GAAG,IAAI,CAAC,UAAU,CAAC;QAClC,CAAC;aAAK,IAAG,gBAAgB,CAAC,EAAE,KAAK,iBAAiB,CAAC,WAAW,IAAI,gBAAgB,CAAC,IAAI,EAAC,CAAC;YACrF,MAAM,MAAM,GAAW,gBAAgB,CAAC,QAAQ,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;YACjF,IAAI,CAAC,qBAAqB,CAAC,CAAC,EAAC,gBAAgB,CAAC,IAAI,EAAC,gBAAgB,CAAC,EAAE,EAAC,MAAM,CAAC,CAAC;YAC/E,CAAC,CAAC,SAAS,GAAG,IAAI,CAAC,UAAU,CAAC;QAClC,CAAC;QACD,OAAO,CAAC,CAAC;IACb,CAAC;IAEO,qBAAqB,CAAC,CAAqC,EAAE,SAAgB,EAAE,MAAa,EAAE,MAAc;QAChH,IAAI,GAAG,GAAuC,CAAC,CAAC;QAChD,MAAM,UAAU,GAAyB,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;QAC7E,IAAG,CAAC,UAAU;YACV,OAAO,GAAG,CAAC;QACf,IAAI,SAAS,KAAK,iBAAiB,CAAC,WAAW,IAAI,CAAC,SAAS,KAAK,iBAAiB,CAAC,SAAS,IAAI,MAAM,KAAK,mBAAmB,CAAC,WAAW,CAAC,EAAG,CAAC;YAC5I,MAAM,CAAC,GAAU,UAAU,CAAC,CAAC,CAAC,KAAK,GAAC,CAAC,CAAC,CAAC;YACvC,IAAI,OAAO,CAAC,CAAC,GAAG,KAAK,QAAQ,IAAI,UAAU,CAAC,CAAC,CAAC,GAAG,GAAC,CAAC,CAAC,IAAI,CAAC,EAAC,CAAC;gBACvD,GAAG,CAAC,SAAS,GAAG,CAAC,CAAC;gBAClB,GAAG,CAAC,OAAO,GAAG,UAAU,CAAC,CAAC,CAAC,GAAG,GAAC,CAAC,CAAC,CAAC;YACtC,CAAC;iBAAK,IAAG,OAAO,CAAC,CAAC,GAAG,IAAI,QAAQ,IAAI,UAAU,CAAC,CAAC,CAAC,GAAG,GAAC,CAAC,CAAC,IAAI,CAAC,EAAC,CAAC;gBAC3D,GAAG,CAAC,SAAS,GAAG,CAAC,CAAC;YACtB,CAAC;QACL,CAAC;aAAK,IAAI,MAAM,KAAK,mBAAmB,CAAC,WAAW,IAAK,CAAC,CAAC,QAAQ,EAAC,CAAC;YACjE,MAAM,CAAC,GAAU,UAAU,CAAC,CAAC,CAAC,QAAQ,GAAC,CAAC,CAAC,CAAC;YAC1C,IAAG,OAAO,CAAC,CAAC,MAAM,KAAK,QAAQ,IAAI,UAAU,CAAC,CAAC,CAAC,MAAM,GAAC,CAAC,CAAC,IAAI,CAAC,EAAC,CAAC;gBAC5D,GAAG,CAAC,YAAY,GAAG,CAAC,CAAC;gBACrB,GAAG,CAAC,UAAU,GAAE,UAAU,CAAC,CAAC,CAAC,MAAM,GAAC,CAAC,CAAC,CAAC;YAC3C,CAAC;iBAAK,IAAG,OAAO,CAAC,CAAC,MAAM,IAAI,QAAQ,IAAI,UAAU,CAAC,CAAC,CAAC,MAAM,GAAC,CAAC,CAAC,IAAI,CAAC,EAAC,CAAC;gBACjE,GAAG,CAAC,YAAY,GAAG,CAAC,CAAC;YACzB,CAAC;QACL,CAAC;QACD,OAAO,GAAG,CAAC;IACf,CAAC;CACJ"}
@@ -1,4 +1,4 @@
1
- import { SequenceAnnotations, Features } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { SequenceAnnotations, Features } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  import { RcsbFvDisplayTypes } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvDefaultConfigValues";
3
3
  import { AnnotationConfigInterface, RcsbAnnotationConfigInterface } from "./AnnotationConfigInterface";
4
4
  import { AnnotationRequestContext } from "../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
@@ -1,6 +1,6 @@
1
1
  import { AlignmentCollectConfig, AlignmentCollectorInterface } from "./AlignmentCollectorInterface";
2
2
  import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
3
- import { SequenceAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
3
+ import { SequenceAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
4
4
  export declare class AlignmentCollector implements AlignmentCollectorInterface {
5
5
  private requestStatus;
6
6
  readonly rcsbFvQuery: RcsbClient;
@@ -1,4 +1,4 @@
1
- import { SequenceAlignments, QueryAlignmentsArgs, SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { SequenceAlignments, QueryAlignmentsArgs, SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  import { RcsbQueryGroupAlignmentArguments } from "../../RcsbGraphQL/RcsbQueryAlignment";
3
3
  import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";
4
4
  interface CommonAlignmentInterface {
@@ -1,4 +1,4 @@
1
- import { SequenceAnnotations, Features } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { SequenceAnnotations, Features } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
3
3
  import { AnnotationRequestContext, AnnotationCollectorInterface } from "./AnnotationCollectorInterface";
4
4
  export declare class AnnotationCollector implements AnnotationCollectorInterface {
@@ -1,4 +1,4 @@
1
- import { SequenceAnnotations, Features, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { SequenceAnnotations, Features, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  import { FeaturePositionGaps } from "../../RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager";
3
3
  import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";
4
4
  import { PolymerEntityInstanceInterface } from "../DataCollectors/PolymerEntityInstancesCollector";
@@ -1,4 +1,4 @@
1
- import { QueryAssembliesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
1
+ import { QueryAssembliesArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
2
  export interface AssemblyInterfacesInterface {
3
3
  rcsbId: string;
4
4
  interfaceIds: Array<string>;
@@ -1,4 +1,4 @@
1
- import { QueryEntryArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
1
+ import { QueryEntryArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
2
  import { PolymerEntityInstanceInterface } from "./PolymerEntityInstancesCollector";
3
3
  export declare class EntryAssembliesCollector {
4
4
  private readonly rcsbFvQuery;
@@ -1,4 +1,4 @@
1
- import { QueryPolymer_Entity_GroupArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
1
+ import { QueryPolymer_Entity_GroupArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
2
  import { PolymerEntityInstanceInterface } from "./PolymerEntityInstancesCollector";
3
3
  export declare class GroupMemberCollector {
4
4
  private readonly rcsbFvQuery;
@@ -1,4 +1,4 @@
1
- import { QueryPolymer_Entity_GroupArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
1
+ import { QueryPolymer_Entity_GroupArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
2
  export interface GroupPropertyInterface {
3
3
  groupName: string;
4
4
  groupDescription: string;
@@ -1,4 +1,4 @@
1
- import { QueryInterfacesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
1
+ import { QueryInterfacesArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
2
  export interface InterfaceInstanceInterface {
3
3
  rcsbId: string;
4
4
  assemblyId: string;
@@ -1,4 +1,4 @@
1
- import { QueryPolymer_EntitiesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
1
+ import { QueryPolymer_EntitiesArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
2
  import { PolymerEntityInstanceInterface } from "./PolymerEntityInstancesCollector";
3
3
  import { MultipleDocumentPropertyCollectorInterface } from "./DataCollectorInterface";
4
4
  export declare class MultipleEntityInstancesCollector implements MultipleDocumentPropertyCollectorInterface<"entity_ids", PolymerEntityInstanceInterface> {
@@ -1,5 +1,5 @@
1
- import { QueryEntriesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
- import { StructureDeterminationMethodology } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
1
+ import { QueryEntriesArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
+ import { StructureDeterminationMethodology } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
3
3
  export interface EntryPropertyInterface {
4
4
  rcsbId: string;
5
5
  entryId: string;
@@ -1,4 +1,4 @@
1
- import { QueryPolymer_EntitiesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
1
+ import { QueryPolymer_EntitiesArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
2
  import { PolymerEntityInstanceInterface } from "./PolymerEntityInstancesCollector";
3
3
  export interface PolymerEntityInterface {
4
4
  rcsbId: string;
@@ -3,7 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.MultiplePolymerEntityCollector = void 0;
4
4
  const tslib_1 = require("tslib");
5
5
  const MultipleEntityInstancesCollector_1 = require("./MultipleEntityInstancesCollector");
6
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
6
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
7
7
  class MultiplePolymerEntityCollector {
8
8
  constructor() {
9
9
  this.multipleEntityInstanceCollector = new MultipleEntityInstancesCollector_1.MultipleEntityInstancesCollector();
@@ -2,7 +2,7 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.PolymerEntityChromosomeCollector = void 0;
4
4
  const tslib_1 = require("tslib");
5
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
5
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
6
6
  const RcsbClient_1 = require("../../RcsbGraphQL/RcsbClient");
7
7
  class PolymerEntityChromosomeCollector {
8
8
  constructor() {
@@ -1,5 +1,5 @@
1
- import { CorePolymerEntityInstance, QueryEntryArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
- import { StructureDeterminationMethodology } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
1
+ import { CorePolymerEntityInstance, QueryEntryArgs } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Yosemite/GqlTypes";
2
+ import { StructureDeterminationMethodology } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
3
3
  export interface PolymerEntityInstanceInterface {
4
4
  rcsbId: string;
5
5
  entityId: string;
@@ -1,5 +1,5 @@
1
1
  import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
2
- import { SequenceAlignments, SequenceAnnotations } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
2
+ import { SequenceAlignments, SequenceAnnotations } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
3
3
  import { PolymerEntityInstanceInterface } from "../DataCollectors/PolymerEntityInstancesCollector";
4
4
  export interface ExternalTrackBuilderInterface {
5
5
  processAlignmentAndFeatures?(data: {
@@ -1,4 +1,4 @@
1
- import { FeaturesType } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { FeaturesType } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  declare const ExtendedTypes: {
3
3
  BurialFraction: FeaturesType;
4
4
  BuriedResidues: FeaturesType;
@@ -1,7 +1,7 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.FeatureType = void 0;
4
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
4
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
5
5
  const BURIAL_FRACTION = "BURIAL_FRACTION";
6
6
  const BURIED_RESIDUES = "BURIED_RESIDUES";
7
7
  const ExtendedTypes = {
@@ -1,7 +1,7 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const tslib_1 = require("tslib");
4
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
4
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
5
5
  const RcsbFvBuilder_1 = require("../RcsbFvWeb/RcsbFvBuilder");
6
6
  const RcsbRequestContextManager_1 = require("../RcsbRequest/RcsbRequestContextManager");
7
7
  const Assertions_1 = require("../RcsbUtils/Helpers/Assertions");
@@ -1,7 +1,7 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const RcsbGroupBuilder_1 = require("../RcsbGroupWeb/RcsbGroupBuilder");
4
- const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
4
+ const DwEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums");
5
5
  const SingleFacets_1 = require("../RcsbSeacrh/FacetStore/SingleFacets");
6
6
  const groupId = "P01112";
7
7
  // buildGroupContent("select", GroupProvenanceId.ProvenanceSequenceIdentity, groupId);
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
3
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
4
4
  const RcsbFvBuilder_1 = require("../RcsbFvWeb/RcsbFvBuilder");
5
5
  (0, RcsbFvBuilder_1.buildInstanceSequenceFv)("pfv", "select", "8PDU", {
6
6
  module: "interface",
@@ -1,7 +1,7 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const RcsbFvBuilder_1 = require("../RcsbFvWeb/RcsbFvBuilder");
4
- const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
4
+ const DwEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums");
5
5
  // rcsbRequestCtxManager.initializeBorregoClient({api:"https://clustrelax-dev.rcsb.org/graphql"});
6
6
  const query = {
7
7
  "query": {
@@ -1,8 +1,8 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const RcsbFvBuilder_1 = require("../RcsbFvWeb/RcsbFvBuilder");
4
- const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
5
- // import {SearchQuery} from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
4
+ const DwEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums");
5
+ // import {SearchQuery} from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchQueryInterface";
6
6
  /* const query: SearchQuery = {
7
7
  "query": {
8
8
  "type": "group",
@@ -5,7 +5,7 @@ const tslib_1 = require("tslib");
5
5
  const RcsbFvChromosome_1 = require("../RcsbFvModule/RcsbFvChromosome");
6
6
  const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
7
7
  const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
8
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
8
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
9
9
  class RcsbFvChromosomeBuilder {
10
10
  static buildFullChromosome(elementFvId, chrId) {
11
11
  return tslib_1.__awaiter(this, void 0, void 0, function* () {
@@ -3,10 +3,10 @@ Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.RcsbFvEntityBuilder = void 0;
4
4
  const tslib_1 = require("tslib");
5
5
  const RcsbFvEntity_1 = require("../RcsbFvModule/RcsbFvEntity");
6
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
6
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
7
7
  const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
8
8
  const RcsbFvUniprotBuilder_1 = require("./RcsbFvUniprotBuilder");
9
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
9
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
10
10
  class RcsbFvEntityBuilder {
11
11
  static buildEntitySummaryFv(elementFvId, elementSelectId, entityId, additionalConfig) {
12
12
  return tslib_1.__awaiter(this, void 0, void 0, function* () {
@@ -1,5 +1,5 @@
1
- import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
2
- import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
1
+ import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
2
+ import { SearchQuery } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchQueryInterface";
3
3
  import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
4
4
  import { ActionMethods } from "../../RcsbFvUI/Helper/ActionMethods";
5
5
  export declare class RcsbFvGroupAlignmentBuilder {
@@ -2,15 +2,15 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.RcsbFvGroupAlignmentBuilder = void 0;
4
4
  const tslib_1 = require("tslib");
5
- const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
5
+ const DwEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums");
6
6
  const SearchRequestProperty_1 = require("../../RcsbSeacrh/SearchRequestProperty");
7
7
  const SearchQueryTools_1 = require("../../RcsbSeacrh/SearchQueryTools");
8
- const SearchEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums");
8
+ const SearchEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchEnums");
9
9
  const GroupPfvApp_1 = require("../RcsbFvGroup/GroupTabs/GroupPfvApp");
10
10
  const ActionMethods_1 = require("../../RcsbFvUI/Helper/ActionMethods");
11
11
  const RcsbFvUniprotBuilder_1 = require("./RcsbFvUniprotBuilder");
12
12
  const GroupExternalTrackBuilder_1 = require("../../RcsbUtils/TrackGenerators/GroupExternalTrackBuilder");
13
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
13
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
14
14
  const RcsbFvGroupBuilder_1 = require("./RcsbFvGroupBuilder");
15
15
  const GroupPfvUI_1 = require("../../RcsbFvUI/GroupPfvUI");
16
16
  const PaginationItemComponent_1 = require("../../RcsbFvUI/Components/PaginationItemComponent");
@@ -1,5 +1,5 @@
1
1
  import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
2
- import { GroupReference, SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
2
+ import { GroupReference, SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
3
3
  export declare class RcsbFvGroupBuilder {
4
4
  static buildGroupAnnotationFv(elementId: string, group: GroupReference, groupId: string, to: SequenceReference, from?: SequenceReference, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
5
5
  static buildGroupAlignmentFv(elementId: string, group: GroupReference, groupId: string, to: SequenceReference, from?: SequenceReference, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
@@ -6,7 +6,7 @@ const RcsbFvInstance_1 = require("../RcsbFvModule/RcsbFvInstance");
6
6
  const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
7
7
  const RcsbFvInterface_1 = require("../RcsbFvModule/RcsbFvInterface");
8
8
  const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
9
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
9
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
10
10
  //TODO Find a better structure for change callbacks
11
11
  class RcsbFvInstanceBuilder {
12
12
  static buildMultipleInstanceSequenceFv(elementFvId_1, elementEntrySelectId_1, elementInstanceSelectId_1, entryIdList_1) {
@@ -1,4 +1,4 @@
1
- import { SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  import { RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
3
3
  export interface PfvBuilderInterface {
4
4
  queryId: string;
@@ -2,7 +2,7 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.RcsbFvProteinSequenceBuilder = void 0;
4
4
  const tslib_1 = require("tslib");
5
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
5
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
6
6
  const RcsbFvProteinSequence_1 = require("../RcsbFvModule/RcsbFvProteinSequence");
7
7
  const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
8
8
  class RcsbFvProteinSequenceBuilder {
@@ -8,7 +8,7 @@ const RcsbFvUniprot_1 = require("../RcsbFvModule/RcsbFvUniprot");
8
8
  const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
9
9
  const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
10
10
  const RcsbFvUniprotAlignment_1 = require("../RcsbFvModule/RcsbFvUniprotAlignment");
11
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
11
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
12
12
  const ALL = "ALL";
13
13
  //TODO Find a better structure for change callbacks
14
14
  class RcsbFvUniprotBuilder {
@@ -2,8 +2,8 @@ import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface, RcsbModuleDataProv
2
2
  import { UniprotSequenceConfig } from "./RcsbFvBuilder/RcsbFvUniprotBuilder";
3
3
  import { InstanceSequenceConfig, InstanceSequenceOnchangeInterface } from "./RcsbFvBuilder/RcsbFvInstanceBuilder";
4
4
  import { PfvBuilderInterface } from "./RcsbFvBuilder/RcsbFvProteinSequenceBuilder";
5
- import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
6
- import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
5
+ import { SearchQuery } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchQueryInterface";
6
+ import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
7
7
  import { PairwiseAlignmentInterface } from "../RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder";
8
8
  import { ActionMethods } from "../RcsbFvUI/Helper/ActionMethods";
9
9
  export declare function unmount(elementId: string): void;
@@ -30,7 +30,7 @@ const RcsbFvEntityBuilder_1 = require("./RcsbFvBuilder/RcsbFvEntityBuilder");
30
30
  const RcsbFvInstanceBuilder_1 = require("./RcsbFvBuilder/RcsbFvInstanceBuilder");
31
31
  const RcsbFvProteinSequenceBuilder_1 = require("./RcsbFvBuilder/RcsbFvProteinSequenceBuilder");
32
32
  const RcsbFvAssemblyBuilder_1 = require("./RcsbFvBuilder/RcsbFvAssemblyBuilder");
33
- const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
33
+ const DwEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums");
34
34
  const RcsbFvGroupTabsBuilder_1 = require("./RcsbFvGroup/RcsbFvGroupTabsBuilder");
35
35
  const RcsbFvGroupAlignmentBuilder_1 = require("./RcsbFvBuilder/RcsbFvGroupAlignmentBuilder");
36
36
  const RcsbFvDataProviderBuilder_1 = require("./RcsbFvBuilder/RcsbFvDataProviderBuilder");
@@ -1,4 +1,4 @@
1
- import { SequenceAlignments, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { SequenceAlignments, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
3
3
  import { AlignmentRequestContextType } from "../RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory";
4
4
  import { BlockFactoryInterface } from "./BlockFactoryInterface";
@@ -1,4 +1,4 @@
1
- import { SequenceAnnotations } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { SequenceAnnotations } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
3
3
  import { AnnotationRequestContext } from "../../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
4
4
  import { BlockFactoryInterface } from "./BlockFactoryInterface";
@@ -1,4 +1,4 @@
1
- import { SequenceAnnotations } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { SequenceAnnotations } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  import { RcsbAnnotationConfig } from "../../../../RcsbAnnotationConfig/RcsbAnnotationConfig";
3
3
  import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
4
4
  import { AnnotationRequestContext } from "../../../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
@@ -1,5 +1,5 @@
1
1
  import { RcsbFvTrackDataElementGapInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
2
- import { FeaturesFeaturePositions } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
2
+ import { FeaturesFeaturePositions } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
3
3
  import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
4
4
  import { RcsbAnnotationConfigInterface } from "../../../../RcsbAnnotationConfig/AnnotationConfigInterface";
5
5
  import { TrackManagerFactoryInterface, TrackManagerInterface } from "./TrackManagerInterface";
@@ -1,12 +1,12 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.AnnotationTrackManagerFactory = void 0;
4
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
4
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
5
5
  const TrackUtils_1 = require("../../RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils");
6
6
  const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
7
7
  var assertElementListDefined = Assertions_1.Assertions.assertElementListDefined;
8
8
  var assertDefined = Assertions_1.Assertions.assertDefined;
9
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
9
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
10
10
  class AnnotationTrackManagerFactory {
11
11
  getTrackManager(trackId, annotationConfig, entityInstanceTranslator) {
12
12
  return new AnnotationTrackManager(trackId, annotationConfig, entityInstanceTranslator);
@@ -1,6 +1,6 @@
1
1
  import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
2
2
  import { RcsbAnnotationConfigInterface } from "../../../../RcsbAnnotationConfig/AnnotationConfigInterface";
3
- import { Features, SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
3
+ import { Features, SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
4
4
  import { AnnotationProcessingInterface } from "../../../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
5
5
  import { RcsbFvTrackDataAnnotationInterface } from "../../RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface";
6
6
  export interface TrackManagerFactoryInterface<T extends any[]> {
@@ -1,6 +1,6 @@
1
1
  import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
2
2
  import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
3
- import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
3
+ import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
4
4
  import { PolymerEntityInstanceTranslate, AlignmentContextInterface } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
5
5
  import { TrackFactoryInterface } from "../TrackFactoryInterface";
6
6
  import { AlignmentCollectConfig } from "../../../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
@@ -1,4 +1,4 @@
1
- import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
1
+ import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
2
2
  export declare namespace TrackUtils {
3
3
  function getProvenanceConfigFormTarget(targetId: string, targetSource: SequenceReference | AnnotationReference): {
4
4
  name: string;
@@ -2,7 +2,7 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.TrackUtils = void 0;
4
4
  const RcsbAnnotationConstants_1 = require("../../../../../RcsbAnnotationConfig/RcsbAnnotationConstants");
5
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
5
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
6
6
  var TrackUtils;
7
7
  (function (TrackUtils) {
8
8
  function getProvenanceConfigFormTarget(targetId, targetSource) {
@@ -1,7 +1,7 @@
1
1
  import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
2
2
  import { TrackFactoryInterface } from "../TrackFactoryInterface";
3
3
  import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
4
- import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
4
+ import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
5
5
  import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
6
6
  export declare class MsaAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
7
7
  private observedAlignmentTrackFactory;
@@ -4,7 +4,7 @@ exports.MsaAlignmentTrackFactory = void 0;
4
4
  const tslib_1 = require("tslib");
5
5
  const PositionalScoreAlignmentTrackFactory_1 = require("./PositionalScoreAlignmentTrackFactory");
6
6
  const PlainObservedAlignmentTrackFactory_1 = require("./PlainObservedAlignmentTrackFactory");
7
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
7
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
8
8
  class MsaAlignmentTrackFactory {
9
9
  constructor(entityInstanceTranslator) {
10
10
  this.observedAlignmentTrackFactory = new PlainObservedAlignmentTrackFactory_1.PlainObservedAlignmentTrackFactory(entityInstanceTranslator);
@@ -1,6 +1,6 @@
1
1
  import { RcsbFvColorGradient, RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
2
2
  import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
3
- import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
3
+ import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
4
4
  import { PolymerEntityInstanceTranslate, AlignmentContextInterface } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
5
5
  import { TrackFactoryInterface } from "../TrackFactoryInterface";
6
6
  import { AlignmentCollectConfig } from "../../../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
@@ -1,5 +1,5 @@
1
1
  import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
2
- import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
2
+ import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
3
3
  import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
4
4
  import { TrackFactoryInterface } from "../TrackFactoryInterface";
5
5
  import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
@@ -9,7 +9,7 @@ const TrackUtils_1 = require("./Helper/TrackUtils");
9
9
  const RcsbRequestContextManager_1 = require("../../../../RcsbRequest/RcsbRequestContextManager");
10
10
  const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
11
11
  var assertDefined = Assertions_1.Assertions.assertDefined;
12
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
12
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
13
13
  class PlainObservedAlignmentTrackFactory {
14
14
  constructor(entityInstanceTranslator) {
15
15
  this.unObservedResidues = new Map();
@@ -1,6 +1,6 @@
1
1
  import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
2
2
  import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
3
- import { AlignedRegions, SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
3
+ import { AlignedRegions, SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
4
4
  import { AlignmentContextInterface, PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
5
5
  import { TrackFactoryInterface } from "../TrackFactoryInterface";
6
6
  import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
@@ -2,7 +2,7 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.PositionalScoreAlignmentTrackFactory = void 0;
4
4
  const tslib_1 = require("tslib");
5
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
5
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
6
6
  const Operator_1 = require("../../../../RcsbUtils/Helpers/Operator");
7
7
  const lodash_1 = require("lodash");
8
8
  const PlainAlignmentTrackFactory_1 = require("./PlainAlignmentTrackFactory");
@@ -10,7 +10,7 @@ const TrackUtils_1 = require("./Helper/TrackUtils");
10
10
  const RcsbRequestContextManager_1 = require("../../../../RcsbRequest/RcsbRequestContextManager");
11
11
  const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
12
12
  var assertDefined = Assertions_1.Assertions.assertDefined;
13
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
13
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
14
14
  class PositionalScoreAlignmentTrackFactory {
15
15
  constructor(entityInstanceTranslator) {
16
16
  this.positionalScores = new Map();
@@ -2,12 +2,12 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.SequenceTrackFactory = void 0;
4
4
  const tslib_1 = require("tslib");
5
- const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
5
+ const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
6
6
  const SequenceTrackTitleFactory_1 = require("../TrackTitleFactoryImpl/SequenceTrackTitleFactory");
7
7
  const TrackUtils_1 = require("./Helper/TrackUtils");
8
8
  const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
9
9
  var assertDefined = Assertions_1.Assertions.assertDefined;
10
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
10
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
11
11
  class SequenceTrackFactory {
12
12
  constructor(entityInstanceTranslator, trackTitleFactory) {
13
13
  this.entityInstanceTranslator = undefined;
@@ -1,6 +1,6 @@
1
1
  import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
2
2
  import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
3
- import { TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
3
+ import { TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
4
4
  import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
5
5
  import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
6
6
  export declare class AlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
@@ -4,7 +4,7 @@ exports.AlignmentTrackTitleFactory = void 0;
4
4
  const tslib_1 = require("tslib");
5
5
  const ExperimentalAlignmentTrackTitleFactory_1 = require("./ExperimentalAlignmentTrackTitleFactory");
6
6
  const ModelAlignmentTrackTitleFactory_1 = require("./ModelAlignmentTrackTitleFactory");
7
- const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
7
+ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
8
8
  class AlignmentTrackTitleFactory {
9
9
  constructor(entityInstanceTranslator) {
10
10
  this.experimentalTrackTitleFactory = new ExperimentalAlignmentTrackTitleFactory_1.ExperimentalAlignmentTrackTitleFactory(entityInstanceTranslator);