@rbalchii/anchor-engine 4.7.0

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Files changed (539) hide show
  1. package/LICENSE +609 -0
  2. package/README.md +317 -0
  3. package/anchor.bat +5 -0
  4. package/docs/API.md +314 -0
  5. package/docs/DEPLOYMENT.md +448 -0
  6. package/docs/INDEX.md +226 -0
  7. package/docs/STAR_Whitepaper_Executive.md +216 -0
  8. package/docs/TROUBLESHOOTING.md +535 -0
  9. package/docs/archive/GIT_BACKUP_VERIFICATION.md +297 -0
  10. package/docs/archive/adoption-guide.md +264 -0
  11. package/docs/archive/adoption-preparation.md +179 -0
  12. package/docs/archive/agent-harness-integration.md +227 -0
  13. package/docs/archive/api-reference.md +106 -0
  14. package/docs/archive/api_flows_diagram.md +118 -0
  15. package/docs/archive/architecture.md +410 -0
  16. package/docs/archive/architecture_diagram.md +174 -0
  17. package/docs/archive/broader-adoption-preparation.md +175 -0
  18. package/docs/archive/browser-paradigm-architecture.md +163 -0
  19. package/docs/archive/chat-integration.md +124 -0
  20. package/docs/archive/community-adoption-materials.md +103 -0
  21. package/docs/archive/community-adoption.md +147 -0
  22. package/docs/archive/comparison-with-siloed-solutions.md +192 -0
  23. package/docs/archive/comprehensive-docs.md +156 -0
  24. package/docs/archive/data_flow_diagram.md +251 -0
  25. package/docs/archive/enhancement-implementation-summary.md +146 -0
  26. package/docs/archive/evolution-summary.md +141 -0
  27. package/docs/archive/ingestion_pipeline_diagram.md +198 -0
  28. package/docs/archive/native-module-profiling-results.md +135 -0
  29. package/docs/archive/positioning-document.md +158 -0
  30. package/docs/archive/positioning.md +175 -0
  31. package/docs/archive/query-builder-documentation.md +218 -0
  32. package/docs/archive/quick-reference.md +40 -0
  33. package/docs/archive/quickstart.md +63 -0
  34. package/docs/archive/relationship-narrative-discovery.md +141 -0
  35. package/docs/archive/search-logic-improvement-plan.md +336 -0
  36. package/docs/archive/search_architecture_diagram.md +212 -0
  37. package/docs/archive/semantic-architecture-guide.md +97 -0
  38. package/docs/archive/sequence-diagrams.md +128 -0
  39. package/docs/archive/system_components_diagram.md +296 -0
  40. package/docs/archive/test-framework-integration.md +109 -0
  41. package/docs/archive/testing-framework-documentation.md +397 -0
  42. package/docs/archive/testing-framework-summary.md +121 -0
  43. package/docs/archive/testing-framework.md +377 -0
  44. package/docs/archive/ui-architecture.md +75 -0
  45. package/docs/arxiv/BIBLIOGRAPHY.bib +145 -0
  46. package/docs/arxiv/RELATED_WORK.tex +39 -0
  47. package/docs/arxiv/compile.bat +48 -0
  48. package/docs/arxiv/joss_response.md +33 -0
  49. package/docs/arxiv/prepare-submission.bat +46 -0
  50. package/docs/arxiv/review.md +128 -0
  51. package/docs/arxiv/star-whitepaper.tex +657 -0
  52. package/docs/code-patterns.md +289 -0
  53. package/docs/whitepaper.md +445 -0
  54. package/engine/dist/agent/runtime.d.ts +41 -0
  55. package/engine/dist/agent/runtime.d.ts.map +1 -0
  56. package/engine/dist/agent/runtime.js +73 -0
  57. package/engine/dist/agent/runtime.js.map +1 -0
  58. package/engine/dist/commands/audit-tags.d.ts +14 -0
  59. package/engine/dist/commands/audit-tags.d.ts.map +1 -0
  60. package/engine/dist/commands/audit-tags.js +180 -0
  61. package/engine/dist/commands/audit-tags.js.map +1 -0
  62. package/engine/dist/commands/distill.d.ts +19 -0
  63. package/engine/dist/commands/distill.d.ts.map +1 -0
  64. package/engine/dist/commands/distill.js +114 -0
  65. package/engine/dist/commands/distill.js.map +1 -0
  66. package/engine/dist/commands/generate-synonyms.d.ts +14 -0
  67. package/engine/dist/commands/generate-synonyms.d.ts.map +1 -0
  68. package/engine/dist/commands/generate-synonyms.js +91 -0
  69. package/engine/dist/commands/generate-synonyms.js.map +1 -0
  70. package/engine/dist/config/index.d.ts +115 -0
  71. package/engine/dist/config/index.d.ts.map +1 -0
  72. package/engine/dist/config/index.js +326 -0
  73. package/engine/dist/config/index.js.map +1 -0
  74. package/engine/dist/config/max-recall-config.d.ts +102 -0
  75. package/engine/dist/config/max-recall-config.d.ts.map +1 -0
  76. package/engine/dist/config/max-recall-config.js +102 -0
  77. package/engine/dist/config/max-recall-config.js.map +1 -0
  78. package/engine/dist/config/paths.d.ts +40 -0
  79. package/engine/dist/config/paths.d.ts.map +1 -0
  80. package/engine/dist/config/paths.js +49 -0
  81. package/engine/dist/config/paths.js.map +1 -0
  82. package/engine/dist/core/batch.d.ts +19 -0
  83. package/engine/dist/core/batch.d.ts.map +1 -0
  84. package/engine/dist/core/batch.js +37 -0
  85. package/engine/dist/core/batch.js.map +1 -0
  86. package/engine/dist/core/db.d.ts +58 -0
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  88. package/engine/dist/core/db.js +563 -0
  89. package/engine/dist/core/db.js.map +1 -0
  90. package/engine/dist/core/inference/ChatWorker.d.ts +2 -0
  91. package/engine/dist/core/inference/ChatWorker.d.ts.map +1 -0
  92. package/engine/dist/core/inference/ChatWorker.js +28 -0
  93. package/engine/dist/core/inference/ChatWorker.js.map +1 -0
  94. package/engine/dist/core/inference/context_manager.d.ts +49 -0
  95. package/engine/dist/core/inference/context_manager.d.ts.map +1 -0
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  97. package/engine/dist/core/inference/context_manager.js.map +1 -0
  98. package/engine/dist/core/inference/llamaLoaderWorker.d.ts +2 -0
  99. package/engine/dist/core/inference/llamaLoaderWorker.d.ts.map +1 -0
  100. package/engine/dist/core/inference/llamaLoaderWorker.js +23 -0
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  102. package/engine/dist/core/vector.d.ts +40 -0
  103. package/engine/dist/core/vector.d.ts.map +1 -0
  104. package/engine/dist/core/vector.js +167 -0
  105. package/engine/dist/core/vector.js.map +1 -0
  106. package/engine/dist/index.d.ts +4 -0
  107. package/engine/dist/index.d.ts.map +1 -0
  108. package/engine/dist/index.js +400 -0
  109. package/engine/dist/index.js.map +1 -0
  110. package/engine/dist/middleware/auth.d.ts +14 -0
  111. package/engine/dist/middleware/auth.d.ts.map +1 -0
  112. package/engine/dist/middleware/auth.js +44 -0
  113. package/engine/dist/middleware/auth.js.map +1 -0
  114. package/engine/dist/middleware/request-tracing.d.ts +29 -0
  115. package/engine/dist/middleware/request-tracing.d.ts.map +1 -0
  116. package/engine/dist/middleware/request-tracing.js +115 -0
  117. package/engine/dist/middleware/request-tracing.js.map +1 -0
  118. package/engine/dist/middleware/validate.d.ts +30 -0
  119. package/engine/dist/middleware/validate.d.ts.map +1 -0
  120. package/engine/dist/middleware/validate.js +117 -0
  121. package/engine/dist/middleware/validate.js.map +1 -0
  122. package/engine/dist/native/index.d.ts +106 -0
  123. package/engine/dist/native/index.d.ts.map +1 -0
  124. package/engine/dist/native/index.js +230 -0
  125. package/engine/dist/native/index.js.map +1 -0
  126. package/engine/dist/native/types.d.ts +45 -0
  127. package/engine/dist/native/types.d.ts.map +1 -0
  128. package/engine/dist/native/types.js +6 -0
  129. package/engine/dist/native/types.js.map +1 -0
  130. package/engine/dist/profiling/atomization-profiling.d.ts +8 -0
  131. package/engine/dist/profiling/atomization-profiling.d.ts.map +1 -0
  132. package/engine/dist/profiling/atomization-profiling.js +108 -0
  133. package/engine/dist/profiling/atomization-profiling.js.map +1 -0
  134. package/engine/dist/profiling/bottleneck-identification.d.ts +8 -0
  135. package/engine/dist/profiling/bottleneck-identification.d.ts.map +1 -0
  136. package/engine/dist/profiling/bottleneck-identification.js +249 -0
  137. package/engine/dist/profiling/bottleneck-identification.js.map +1 -0
  138. package/engine/dist/profiling/content-sanitization-profiling.d.ts +12 -0
  139. package/engine/dist/profiling/content-sanitization-profiling.d.ts.map +1 -0
  140. package/engine/dist/profiling/content-sanitization-profiling.js +266 -0
  141. package/engine/dist/profiling/content-sanitization-profiling.js.map +1 -0
  142. package/engine/dist/profiling/simhash-profiling.d.ts +11 -0
  143. package/engine/dist/profiling/simhash-profiling.d.ts.map +1 -0
  144. package/engine/dist/profiling/simhash-profiling.js +168 -0
  145. package/engine/dist/profiling/simhash-profiling.js.map +1 -0
  146. package/engine/dist/routes/api.d.ts +9 -0
  147. package/engine/dist/routes/api.d.ts.map +1 -0
  148. package/engine/dist/routes/api.js +37 -0
  149. package/engine/dist/routes/api.js.map +1 -0
  150. package/engine/dist/routes/enhanced-api.d.ts +9 -0
  151. package/engine/dist/routes/enhanced-api.d.ts.map +1 -0
  152. package/engine/dist/routes/enhanced-api.js +139 -0
  153. package/engine/dist/routes/enhanced-api.js.map +1 -0
  154. package/engine/dist/routes/health.d.ts +8 -0
  155. package/engine/dist/routes/health.d.ts.map +1 -0
  156. package/engine/dist/routes/health.js +89 -0
  157. package/engine/dist/routes/health.js.map +1 -0
  158. package/engine/dist/routes/monitoring.d.ts +8 -0
  159. package/engine/dist/routes/monitoring.d.ts.map +1 -0
  160. package/engine/dist/routes/monitoring.js +509 -0
  161. package/engine/dist/routes/monitoring.js.map +1 -0
  162. package/engine/dist/routes/v1/admin.d.ts +3 -0
  163. package/engine/dist/routes/v1/admin.d.ts.map +1 -0
  164. package/engine/dist/routes/v1/admin.js +261 -0
  165. package/engine/dist/routes/v1/admin.js.map +1 -0
  166. package/engine/dist/routes/v1/atoms.d.ts +3 -0
  167. package/engine/dist/routes/v1/atoms.d.ts.map +1 -0
  168. package/engine/dist/routes/v1/atoms.js +172 -0
  169. package/engine/dist/routes/v1/atoms.js.map +1 -0
  170. package/engine/dist/routes/v1/backup.d.ts +3 -0
  171. package/engine/dist/routes/v1/backup.d.ts.map +1 -0
  172. package/engine/dist/routes/v1/backup.js +100 -0
  173. package/engine/dist/routes/v1/backup.js.map +1 -0
  174. package/engine/dist/routes/v1/git.d.ts +3 -0
  175. package/engine/dist/routes/v1/git.d.ts.map +1 -0
  176. package/engine/dist/routes/v1/git.js +316 -0
  177. package/engine/dist/routes/v1/git.js.map +1 -0
  178. package/engine/dist/routes/v1/ingest.d.ts +3 -0
  179. package/engine/dist/routes/v1/ingest.d.ts.map +1 -0
  180. package/engine/dist/routes/v1/ingest.js +66 -0
  181. package/engine/dist/routes/v1/ingest.js.map +1 -0
  182. package/engine/dist/routes/v1/memory.d.ts +14 -0
  183. package/engine/dist/routes/v1/memory.d.ts.map +1 -0
  184. package/engine/dist/routes/v1/memory.js +87 -0
  185. package/engine/dist/routes/v1/memory.js.map +1 -0
  186. package/engine/dist/routes/v1/research.d.ts +3 -0
  187. package/engine/dist/routes/v1/research.d.ts.map +1 -0
  188. package/engine/dist/routes/v1/research.js +109 -0
  189. package/engine/dist/routes/v1/research.js.map +1 -0
  190. package/engine/dist/routes/v1/search.d.ts +3 -0
  191. package/engine/dist/routes/v1/search.d.ts.map +1 -0
  192. package/engine/dist/routes/v1/search.js +180 -0
  193. package/engine/dist/routes/v1/search.js.map +1 -0
  194. package/engine/dist/routes/v1/settings.d.ts +8 -0
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  198. package/engine/dist/routes/v1/system.d.ts +3 -0
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  202. package/engine/dist/routes/v1/tags.d.ts +3 -0
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  206. package/engine/dist/server-8080.d.ts +2 -0
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  210. package/engine/dist/services/backup/backup-restore.d.ts +37 -0
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  218. package/engine/dist/services/distillation/radial-distiller-v2.d.ts +127 -0
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  226. package/engine/dist/services/health-check-enhanced.d.ts +89 -0
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  230. package/engine/dist/services/idle-manager.d.ts +56 -0
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  242. package/engine/dist/services/ingest/atomizer-service.d.ts +74 -0
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@@ -0,0 +1,216 @@
1
+ # STAR: Semantic Temporal Associative Retrieval
2
+ ## Executive Summary
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+
4
+ **A Browser‑Inspired Paradigm for Local‑First AI Memory**
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+
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+ **Version:** 4.8.0 | **Date:** March 18, 2026 | **Author:** Robert S. Balch II
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+
8
+ ---
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+
10
+ ## Abstract
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+
12
+ Modern AI memory relies on massive vector indices, GPU‑heavy infrastructure, and opaque similarity metrics. This creates artificial scarcity and locks users into cloud ecosystems.
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+
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+ **STAR** (Semantic Temporal Associative Retrieval) introduces a **local‑first, deterministic, explainable** retrieval algorithm inspired by how web browsers load only the shards needed for the current view. STAR enables any device—from a $200 laptop to a workstation—to navigate massive datasets using a sparse graph of atoms and tags, with retrieval complexity **O(k·d̄)** instead of **O(n log n)**.
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+
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+ **Production validated:** 91MB chat history, 280K molecules, 151K atoms, <200ms search latency, <1GB RAM.
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+
18
+ ---
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+
20
+ ## 1. The Problem: AI Memory Is Broken
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+
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+ Today's RAG systems:
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+ - ❌ Load entire vector indices into RAM (4-8GB minimum)
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+ - ❌ Require GPUs for acceptable performance
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+ - ❌ Produce opaque, non‑deterministic results
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+ - ❌ Depend on cloud infrastructure or expensive hardware
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+ - ❌ Can't explain *why* something was retrieved
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+
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+ This is unsustainable for personal, local‑first AI. It's expensive, unprivate, and inaccessible to most users.
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+
31
+ ---
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+
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+ ## 2. The Solution: STAR
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+
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+ STAR models memory as a **bipartite graph**:
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+
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+ | Component | Description |
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+ |-----------|-------------|
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+ | **Atoms** | Pointers to content (file + byte range) — NOT the content itself |
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+ | **Tags** | Semantic concepts extracted from content |
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+ | **Edges** | Relationships between atoms and tags |
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+
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+ Retrieval is governed by a **unified field equation**:
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+
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+ ```
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+ W(q,a) = |T(q) ∩ T(a)| · γ^d(q,a) × e^(−λΔt) × (1 − H(h_q, h_a)/64)
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+ ↑ Semantic Gravity ↑ Temporal Decay ↑ Structural Gravity
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+ ```
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+
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+ | Component | What It Does | Default |
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+ |-----------|--------------|---------|
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+ | **Semantic Gravity** | Shared tags × hop‑distance damping | γ = 0.85 |
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+ | **Temporal Decay** | Recent memories weighted higher | λ = 0.0001 s⁻¹ |
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+ | **Structural Gravity** | SimHash proximity (64-bit fingerprints) | Hamming distance |
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+
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+ **Multiplicative scoring** eliminates noise: any zero factor removes the candidate.
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+
58
+ ---
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+
60
+ ## 3. Architecture: The Browser Paradigm
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+
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+ Just as a browser loads only the HTML, CSS, and JS needed for the current view, STAR loads only the atoms relevant to a query.
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+
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+ ```
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+ ┌─────────────────────────────────────────────────────────────┐
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+ │ ⚡ ANCHOR ENGINE │
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+ │ (Deterministic Memory Layer) │
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+ │ │
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+ │ - Graph traversal (STAR algorithm) │
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+ │ - Pointer-only index (<1GB RAM) │
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+ │ - Deterministic retrieval (same query = same result) │
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+ └────────────────────┬────────────────────────────────────────┘
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+
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+ ┌───────────┼───────────┐
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+ │ │ │
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+ ▼ ▼ ▼
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+ ┌──────────────┐ ┌──────────┐ ┌─────────────┐
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+ │ PGlite │ │ mirrored │ │ MCP Clients │
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+ │ (WASM DB) │ │ _brain/ │ │ (Claude, │
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+ │ │ │ (Content)│ │ Cursor) │
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+ └──────────────┘ └──────────┘ └─────────────┘
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+ ```
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+
84
+ **Key Design Decisions:**
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+
86
+ 1. **Content on disk** — `mirrored_brain/` filesystem is the source of truth
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+ 2. **Pointers in database** — PGlite stores only file paths + byte offsets
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+ 3. **Disposable index** — Wipe the database and rebuild in minutes from filesystem
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+ 4. **Lazy loading** — Load content only when needed for context assembly
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+
91
+ This yields:
92
+ - ✅ **<1GB RAM** usage even for 100MB+ datasets
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+ - ✅ **O(k·d̄)** retrieval — linear in graph degree, not total size
94
+ - ✅ **Deterministic, explainable results** — every atom includes provenance
95
+
96
+ ---
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+
98
+ ## 4. Retrieval Protocol
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+
100
+ ### Phase 1: Anchor Discovery
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+ Find high‑precision seeds via:
102
+ - Full‑text search (PGlite `tsvector`/`tsquery`)
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+ - Tag matches
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+ - Engram cache (frequently accessed atoms)
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+
106
+ **Output:** 20–200 anchor atoms
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+
108
+ ### Phase 2: Radial Inflation
109
+ Graph traversal with:
110
+ - Hop‑distance damping (γ^d)
111
+ - Temporal decay (e^−λΔt)
112
+ - Structural similarity (SimHash)
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+
114
+ **Output:** 40–500 associated atoms, ranked by gravity score
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+
116
+ ### Phase 3: Elastic Context Assembly
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+ - Merge atoms within proximity
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+ - Snap to sentence boundaries
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+ - Respect token budgets
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+
121
+ **Output:** 8–12 coherent paragraphs (4K–618K chars)
122
+
123
+ ---
124
+
125
+ ## 5. Benchmarks (Real Production Data)
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+
127
+ **Hardware:** AMD Ryzen / Intel i7, 16GB RAM, NVMe SSD, no GPU
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+
129
+ **Dataset:** 91MB chat history (~25M tokens)
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+
131
+ | Metric | Value |
132
+ |--------|-------|
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+ | **Molecules** | 280,000 |
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+ | **Atoms** | 151,876 |
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+ | **Files** | 436 |
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+ | **Ingestion Time** | 178 seconds |
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+ | **Search Latency (p95)** | <200ms |
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+ | **Memory (idle)** | ~600MB |
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+ | **Memory (peak)** | ~1.6GB |
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+ | **Restore Speed** | 281,690 atoms in 13.8 min |
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+
142
+ **Comparison: STAR vs. Vector RAG**
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+
144
+ | Feature | STAR | Vector RAG |
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+ |---------|------|------------|
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+ | **Hardware** | CPU‑only | GPU preferred |
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+ | **RAM** | <1GB | 4–8GB |
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+ | **Explainability** | Native (tags, hops, decay) | None (black box) |
149
+ | **Deterministic** | ✅ Yes | ❌ No |
150
+ | **Cloud Required** | ❌ No | Often |
151
+ | **Retrieval Complexity** | O(k·d̄) | O(n log n) |
152
+
153
+ ---
154
+
155
+ ## 6. What's New in v4.8.0
156
+
157
+ ### MCP Write Operations
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+ - **`anchor_ingest_text`** — Ingest raw text directly
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+ - **`anchor_ingest_file`** — Ingest files from filesystem
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+ - Security toggle (opt-in via `user_settings.json`)
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+ - Bucket selection (`inbox` vs `external-inbox`)
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+
163
+ ### Session Index
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+ - **`anchor_search_index`** — Fast chat session lookup
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+ - **`anchor_fetch_session`** — Targeted session retrieval
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+ - Two-tier memory retrieval (index → targeted fetch)
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+
168
+ ### Web UI Improvements
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+ - **Paste & Ingest** tab — Quick text ingestion
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+ - Bucket selector with guidance
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+ - Version badge (v4.8.0)
172
+
173
+ ### Philosophy Documentation
174
+ - Core principles embedded throughout docs
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+ - "AI memory should work like your brain" narrative
176
+ - 5 new documentation files
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+
178
+ ---
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+
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+ ## 7. Conclusion
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+
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+ STAR proves that AI memory can be:
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+ - ✅ **Local** — no cloud, no API keys
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+ - ✅ **Explainable** — every result has a receipt
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+ - ✅ **Deterministic** — same query, same answer
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+ - ✅ **Efficient** — runs on commodity hardware
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+ - ✅ **Hardware‑agnostic** — from Raspberry Pi to server
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+
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+ This architecture democratizes AI memory and returns control to users.
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+
191
+ ---
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+
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+ ## Quick Start
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+
195
+ ```bash
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+ git clone https://github.com/RSBalchII/anchor-engine-node.git
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+ cd anchor-engine-node
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+ pnpm install
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+ pnpm build
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+ pnpm start
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+ ```
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+
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+ Open http://localhost:3160
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+
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+ ---
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+
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+ ## Full Documentation
208
+
209
+ - **[Full Whitepaper](whitepaper.md)** — Complete mathematical derivation
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+ - **[System Spec](../specs/spec.md)** — Architecture diagrams
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+ - **[API Reference](API.md)** — All endpoints
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+ - **[Standards](../specs/current-standards/)** — Active architecture decisions
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+
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+ ---
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+
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+ *— Robert S. Balch II, March 18, 2026*