@rbalchii/anchor-engine 4.7.0

package/engine/dist/services/backup/backup.js

@@ -0,0 +1,442 @@
+import * as fs from 'fs';
+import * as path from 'path';
+import * as readline from 'readline';
+import { db } from '../../core/db.js';
+import PATHS from '../../config/paths.js';
+const BACKUP_DIR = PATHS.BACKUPS_DIR;
+const MIRRORED_BRAIN_DIR = PATHS.MIRRORED_BRAIN_DIR;
+if (!fs.existsSync(BACKUP_DIR)) {
+    fs.mkdirSync(BACKUP_DIR, { recursive: true });
+}
+/**
+ * Convert JS array to PostgreSQL array format
+ * ['a','b'] => '{a,b}'
+ */
+function toPgArray(arr) {
+    if (!arr || !Array.isArray(arr))
+        return '{}';
+    return '{' + arr.map(v => {
+        if (v === null || v === undefined)
+            return 'NULL';
+        const str = String(v);
+        if (str.includes(',') || str.includes('{') || str.includes('}') || str.includes('"')) {
+            return '"' + str.replace(/"/g, '""') + '"';
+        }
+        return str;
+    }).join(',') + '}';
+}
+/**
+ * Async generator: walks a directory recursively, yielding absolute file paths.
+ */
+async function* walkDir(dir) {
+    const entries = await fs.promises.readdir(dir, { withFileTypes: true });
+    for (const entry of entries) {
+        const fullPath = path.join(dir, entry.name);
+        if (entry.isDirectory()) {
+            yield* walkDir(fullPath);
+        }
+        else {
+            yield fullPath;
+        }
+    }
+}
+export async function createBackup() {
+    const timestamp = new Date().toISOString().replace(/[:.]/g, '-');
+    const filename = `backup_${timestamp}.json`;
+    const filePath = path.join(BACKUP_DIR, filename);
+    console.log(`[Backup] Starting backup to ${filename}...`);
+    const stream = fs.createWriteStream(filePath, { encoding: 'utf8' });
+    const write = (data) => {
+        return new Promise((resolve) => {
+            if (!stream.write(data)) {
+                stream.once('drain', resolve);
+            }
+            else {
+                resolve();
+            }
+        });
+    };
+    let fileCount = 0;
+    let sourceCount = 0;
+    let engramCount = 0;
+    try {
+        await write('{\n  "timestamp": "' + new Date().toISOString() + '",\n');
+        await write('  "version": "2",\n');
+        // 1. Stream mirrored_brain/ files (cleaned content)
+        await write('  "files": [\n');
+        let firstFile = true;
+        if (fs.existsSync(MIRRORED_BRAIN_DIR)) {
+            for await (const absPath of walkDir(MIRRORED_BRAIN_DIR)) {
+                try {
+                    const content = await fs.promises.readFile(absPath, 'utf-8');
+                    const relativePath = path.relative(MIRRORED_BRAIN_DIR, absPath)
+                        .replace(/\\/g, '/'); // normalize to forward slashes
+                    if (!firstFile)
+                        await write(',\n');
+                    await write('    ' + JSON.stringify({ path: relativePath, content }));
+                    firstFile = false;
+                    fileCount++;
+                }
+                catch (e) {
+                    console.warn(`[Backup] Skipping unreadable file: ${absPath}: ${e.message}`);
+                }
+            }
+        }
+        else {
+            console.warn('[Backup] mirrored_brain/ does not exist ΓÇö files section will be empty.');
+        }
+        await write('\n  ],\n');
+        // 2. Stream sources metadata
+        await write('  "source": [\n');
+        const sourceResult = await db.run('SELECT path, hash, total_atoms, last_ingest FROM sources');
+        if (sourceResult.rows) {
+            for (let i = 0; i < sourceResult.rows.length; i++) {
+                if (i > 0)
+                    await write(',\n');
+                await write('    ' + JSON.stringify(sourceResult.rows[i]));
+                sourceCount++;
+            }
+        }
+        await write('\n  ],\n');
+        // 3. Stream engrams
+        await write('  "engrams": [\n');
+        const engramResult = await db.run('SELECT key, value FROM engrams');
+        if (engramResult.rows) {
+            for (let i = 0; i < engramResult.rows.length; i++) {
+                if (i > 0)
+                    await write(',\n');
+                await write('    ' + JSON.stringify(engramResult.rows[i]));
+                engramCount++;
+            }
+        }
+        await write('\n  ]\n}');
+    }
+    catch (e) {
+        console.error('[Backup] Streaming failed:', e);
+        stream.end();
+        throw e;
+    }
+    return new Promise((resolve, reject) => {
+        stream.end(() => {
+            const stats = {
+                memory_count: 0,
+                file_count: fileCount,
+                source_count: sourceCount,
+                engram_count: engramCount,
+                timestamp
+            };
+            console.log(`[Backup] Completed. Stats:`, stats);
+            resolve({ filename, stats });
+        });
+        stream.on('error', reject);
+    });
+}
+export async function listBackups() {
+    if (!fs.existsSync(BACKUP_DIR))
+        return [];
+    const files = await fs.promises.readdir(BACKUP_DIR);
+    return files.filter(f => f.endsWith('.json')).sort().reverse(); // Newest first
+}
+export async function restoreBackup(filename) {
+    const filePath = path.join(BACKUP_DIR, filename);
+    if (!fs.existsSync(filePath)) {
+        throw new Error(`Backup file not found: ${filename}`);
+    }
+    const fileSize = fs.statSync(filePath).size;
+    const fileSizeMB = (fileSize / 1024 / 1024).toFixed(2);
+    const startTime = Date.now();
+    console.log(`[Backup] 🔄 Starting restore: ${filename} (${fileSizeMB} MB)`);
+    const fileStream = fs.createReadStream(filePath);
+    const rl = readline.createInterface({ input: fileStream, crlfDelay: Infinity });
+    let currentSection = 'none';
+    let batch = [];
+    const BATCH_SIZE = 1000;
+    let lineCount = 0;
+    let lastLogTime = Date.now();
+    const stats = {
+        memory_count: 0,
+        file_count: 0,
+        source_count: 0,
+        engram_count: 0,
+        timestamp: new Date().toISOString()
+    };
+    // Ensure mirrored_brain/ exists for new-format restores
+    if (!fs.existsSync(MIRRORED_BRAIN_DIR)) {
+        fs.mkdirSync(MIRRORED_BRAIN_DIR, { recursive: true });
+    }
+    const flushBatch = async () => {
+        if (batch.length === 0)
+            return;
+        if (currentSection === 'files') {
+            // New format: write cleaned files to mirrored_brain/
+            for (const row of batch) {
+                if (!row.path || row.content === undefined)
+                    continue;
+                const dest = path.join(MIRRORED_BRAIN_DIR, row.path);
+                const destDir = path.dirname(dest);
+                if (!fs.existsSync(destDir))
+                    fs.mkdirSync(destDir, { recursive: true });
+                try {
+                    fs.writeFileSync(dest, row.content, 'utf-8');
+                    stats.file_count++;
+                }
+                catch (e) {
+                    console.warn(`[Backup] ⚠️ Failed to write ${dest}: ${e.message}`);
+                }
+            }
+        }
+        else if (currentSection === 'memory') {
+            // Legacy format: restore atoms to DB
+            const placeholders = [];
+            const params = [];
+            let pIdx = 1;
+            for (const row of batch) {
+                let embedding = row.embedding;
+                if (typeof embedding === 'string') {
+                    try {
+                        embedding = JSON.parse(embedding);
+                    }
+                    catch {
+                        embedding = [];
+                    }
+                }
+                else if (!Array.isArray(embedding)) {
+                    embedding = [];
+                }
+                let buckets = row.buckets;
+                if (typeof buckets === 'string') {
+                    try {
+                        buckets = JSON.parse(buckets);
+                    }
+                    catch {
+                        buckets = [];
+                    }
+                }
+                else if (!Array.isArray(buckets)) {
+                    buckets = [];
+                }
+                let tags = row.tags;
+                if (typeof tags === 'string') {
+                    try {
+                        tags = JSON.parse(tags);
+                    }
+                    catch {
+                        tags = [];
+                    }
+                }
+                else if (!Array.isArray(tags)) {
+                    tags = [];
+                }
+                placeholders.push(`($${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++})`);
+                params.push(row.id || '', row.timestamp || 0, row.content || '', row.source_path || '', row.source_id || null, row.sequence ?? null, row.type || null, row.hash || null, toPgArray(buckets), toPgArray(tags), row.epochs || null, row.provenance || 'external', row.simhash || '0', toPgArray(embedding));
+                stats.memory_count++;
+            }
+            if (placeholders.length > 0) {
+                await db.run(`INSERT INTO atoms (id, timestamp, content, source_path, source_id, sequence, type, hash, buckets, tags, epochs, provenance, simhash, embedding)
+                     VALUES ${placeholders.join(', ')}
+                     ON CONFLICT (id) DO UPDATE SET
+                       content = EXCLUDED.content, timestamp = EXCLUDED.timestamp,
+                       source_path = EXCLUDED.source_path, source_id = EXCLUDED.source_id,
+                       sequence = EXCLUDED.sequence, type = EXCLUDED.type,
+                       hash = EXCLUDED.hash, buckets = EXCLUDED.buckets,
+                       tags = EXCLUDED.tags, epochs = EXCLUDED.epochs,
+                       provenance = EXCLUDED.provenance, simhash = EXCLUDED.simhash,
+                       embedding = EXCLUDED.embedding`, params);
+            }
+        }
+        else if (currentSection === 'source') {
+            const placeholders = [];
+            const params = [];
+            let pIdx = 1;
+            for (const row of batch) {
+                placeholders.push(`($${pIdx++}, $${pIdx++}, $${pIdx++}, $${pIdx++})`);
+                params.push(row.path || '', row.hash || '', row.total_atoms || 0, row.last_ingest || null);
+                stats.source_count++;
+            }
+            if (placeholders.length > 0) {
+                await db.run(`INSERT INTO sources (path, hash, total_atoms, last_ingest)
+                     VALUES ${placeholders.join(', ')}
+                     ON CONFLICT (path) DO UPDATE SET
+                       hash = EXCLUDED.hash, total_atoms = EXCLUDED.total_atoms,
+                       last_ingest = EXCLUDED.last_ingest`, params);
+            }
+        }
+        else if (currentSection === 'engrams') {
+            const placeholders = [];
+            const params = [];
+            let pIdx = 1;
+            for (const row of batch) {
+                placeholders.push(`($${pIdx++}, $${pIdx++})`);
+                params.push(row.key, row.value);
+                stats.engram_count++;
+            }
+            if (placeholders.length > 0) {
+                await db.run(`INSERT INTO engrams (key, value) VALUES ${placeholders.join(', ')}
+                     ON CONFLICT (key) DO UPDATE SET value = EXCLUDED.value`, params);
+            }
+        }
+        batch = [];
+    };
+    for await (const line of rl) {
+        const trimmed = line.trim();
+        // Section detection
+        if (trimmed.startsWith('"files": [')) {
+            currentSection = 'files';
+            continue;
+        }
+        if (trimmed.startsWith('"memory": [')) {
+            currentSection = 'memory';
+            continue;
+        }
+        if (trimmed.startsWith('"source": [')) {
+            currentSection = 'source';
+            continue;
+        }
+        if (trimmed.startsWith('"engrams": [')) {
+            currentSection = 'engrams';
+            continue;
+        }
+        if (trimmed.startsWith('],')) {
+            await flushBatch();
+            currentSection = 'none';
+            continue;
+        }
+        if (currentSection !== 'none') {
+            lineCount++;
+            const now = Date.now();
+            if (lineCount % 10000 === 0 || (now - lastLogTime) > 10000) {
+                console.log(`[Backup] 📊 Progress: ${lineCount} lines, ${stats.file_count} files, ${stats.memory_count} atoms`);
+                lastLogTime = now;
+            }
+            const jsonStr = trimmed.endsWith(',') ? trimmed.slice(0, -1) : trimmed;
+            try {
+                if (jsonStr.startsWith('{') || jsonStr.startsWith('[')) {
+                    batch.push(JSON.parse(jsonStr));
+                    if (batch.length >= BATCH_SIZE)
+                        await flushBatch();
+                }
+            }
+            catch { /* skip malformed lines */ }
+        }
+    }
+    await flushBatch();
+    // For new-format backups: copy mirrored_brain/ back to inbox/ so DB can rebuild
+    if (stats.file_count > 0) {
+        console.log(`[Backup] 📁 Rebuilding inbox/external-inbox from mirrored_brain/...`);
+        await rebuildInboxFromMirror();
+    }
+    else {
+        // Legacy fallback: rebuild from atom content
+        console.log(`[Backup] 📁 Legacy restore: rebuilding filesystem from sources...`);
+        await rebuildFilesystemFromSources();
+    }
+    const totalTime = ((Date.now() - startTime) / 1000).toFixed(1);
+    const itemsPerSec = Math.round((stats.file_count || stats.memory_count) / parseFloat(totalTime));
+    console.log(`[Backup] ✅ Restore Completed in ${totalTime}s (${itemsPerSec} items/sec)`);
+    console.log(`[Backup] 📊 Stats:`, stats);
+    return stats;
+}
+/**
+ * Rebuild inbox/ and external-inbox/ by copying from mirrored_brain/.
+ * @inbox/ → inbox/  |  @external-inbox/ → external-inbox/
+ * Allows watchdog + ingest pipeline to rebuild the DB on next startup.
+ */
+async function rebuildInboxFromMirror() {
+    const { INBOX_DIR, EXTERNAL_INBOX_DIR } = PATHS;
+    if (!fs.existsSync(MIRRORED_BRAIN_DIR)) {
+        console.warn('[Backup] mirrored_brain/ not found ΓÇö skipping inbox rebuild.');
+        return;
+    }
+    const provDirs = [
+        { from: path.join(MIRRORED_BRAIN_DIR, '@inbox'), to: INBOX_DIR },
+        { from: path.join(MIRRORED_BRAIN_DIR, '@external-inbox'), to: EXTERNAL_INBOX_DIR },
+    ];
+    for (const { from, to } of provDirs) {
+        if (!fs.existsSync(from))
+            continue;
+        if (!fs.existsSync(to))
+            fs.mkdirSync(to, { recursive: true });
+        // Recursively copy from mirror provenance dir to inbox dir
+        for await (const absPath of walkDir(from)) {
+            const rel = path.relative(from, absPath);
+            const dest = path.join(to, rel);
+            const destDir = path.dirname(dest);
+            if (!fs.existsSync(destDir))
+                fs.mkdirSync(destDir, { recursive: true });
+            try {
+                fs.copyFileSync(absPath, dest);
+            }
+            catch (e) {
+                console.warn(`[Backup] ⚠️ Failed to copy ${absPath}: ${e.message}`);
+            }
+        }
+    }
+    console.log('[Backup] ✅ inbox/ and external-inbox/ rebuilt from mirrored_brain/');
+}
+/**
+ * Rebuild inbox and external-inbox from database sources
+ * Mirror Protocol will populate mirrored_brain/ on next startup
+ */
+async function rebuildFilesystemFromSources() {
+    const { INBOX_DIR, EXTERNAL_INBOX_DIR } = PATHS;
+    // Ensure directories exist
+    if (!fs.existsSync(INBOX_DIR))
+        fs.mkdirSync(INBOX_DIR, { recursive: true });
+    if (!fs.existsSync(EXTERNAL_INBOX_DIR))
+        fs.mkdirSync(EXTERNAL_INBOX_DIR, { recursive: true });
+    // Get all sources from database
+    const sourcesResult = await db.run('SELECT path, hash, total_atoms FROM sources');
+    const sources = sourcesResult.rows || [];
+    console.log(`[Backup] 📦 Rebuilding ${sources.length} source files in inbox/external-inbox...`);
+    let inboxCount = 0;
+    let externalCount = 0;
+    let fileCount = 0;
+    let emptyCount = 0;
+    for (const source of sources) {
+        const sourcePath = source.path;
+        if (!sourcePath)
+            continue;
+        // Determine target directory
+        let targetDir = INBOX_DIR;
+        let isExternal = false;
+        if (sourcePath.includes('external-inbox') || sourcePath.includes('web_scrape') || sourcePath.includes('news_agent')) {
+            targetDir = EXTERNAL_INBOX_DIR;
+            isExternal = true;
+            externalCount++;
+        }
+        else {
+            inboxCount++;
+        }
+        // Get relative path
+        let relativePath = sourcePath
+            .replace(/^inbox[\\/]/, '')
+            .replace(/^external-inbox[\\/]/, '');
+        const targetPath = path.join(targetDir, relativePath);
+        const targetDirPath = path.dirname(targetPath);
+        // Create directory structure
+        if (!fs.existsSync(targetDirPath)) {
+            fs.mkdirSync(targetDirPath, { recursive: true });
+        }
+        // Get atoms for this source and aggregate content
+        const atomsResult = await db.run(`SELECT content, sequence, timestamp FROM atoms WHERE source_path = $1 ORDER BY sequence NULLS LAST, timestamp`, [sourcePath]);
+        console.log(`[Backup] 🔍 Source: ${sourcePath} | Atoms found: ${atomsResult.rows?.length || 0}`);
+        if (atomsResult.rows && atomsResult.rows.length > 0) {
+            const content = atomsResult.rows.map((r) => r.content).join('\n');
+            try {
+                fs.writeFileSync(targetPath, content, 'utf-8');
+                fileCount++;
+                console.log(`[Backup] 📄 Restored: ${targetPath} (${content.length} chars)`);
+            }
+            catch (e) {
+                console.warn(`[Backup] ⚠️ Failed to write ${targetPath}: ${e.message}`);
+            }
+        }
+        else {
+            emptyCount++;
+            console.warn(`[Backup] ⚠️ No atoms found for source: ${sourcePath}`);
+        }
+    }
+    console.log(`[Backup] ✅ Filesystem rebuild complete: ${inboxCount} inbox, ${externalCount} external, ${fileCount} files written, ${emptyCount} empty sources`);
+    console.log(`[Backup] ℹ️ mirrored_brain/ will be populated on next startup by Mirror Protocol (Standard 110)`);
+}
+//# sourceMappingURL=backup.js.map

package/engine/dist/services/backup/backup.js.map

@@ -0,0 +1 @@
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package/engine/dist/services/distillation/radial-distiller-v2.d.ts

@@ -0,0 +1,127 @@
+/**
+ * Radial Distiller v2.0 — Decision Record Output
+ *
+ * Three-phase pipeline for semantic corpus compression:
+ * 1. COLLECT: Extract semantic blocks (headings, sections)
+ * 2. DEDUPLICATE: Block-level deduplication with SimHash
+ * 3. REASSEMBLE: Build Decision Record JSON output
+ *
+ * Prevents self-contamination by filtering distilled_* files
+ */
+/**
+ * Semantic Block interface
+ */
+export interface SemanticBlock {
+    id: string;
+    type: 'heading1' | 'heading2' | 'heading3' | 'problem' | 'solution' | 'rationale' | 'status' | 'content';
+    content: string;
+    heading?: string;
+    level: number;
+    provenance: string[];
+    mtime: number;
+    simhash: string;
+    tags?: string[];
+}
+/**
+ * Decision Record interface (final output)
+ */
+export interface DecisionRecord {
+    id: string;
+    title: string;
+    problem?: string;
+    solution?: string[];
+    rationale?: string;
+    supersedes?: string[];
+    status: 'active' | 'deprecated' | 'archived';
+    timestamp: string;
+    provenance: string[];
+    tags: string[];
+}
+/**
+ * Universal Digital Object Metadata
+ * Captures file-agnostic metadata for any digital object
+ */
+export interface DigitalObjectMetadata {
+    id: string;
+    source_path: string;
+    source_type: string;
+    created_at?: string;
+    modified_at: string;
+    ingested_at: string;
+    bucket: string;
+    compound_id: string;
+    size_bytes: number;
+    line_count?: number;
+    char_count?: number;
+    topics?: string[];
+    entities?: string[];
+    tags?: string[];
+}
+/**
+ * Chat Session Metadata (extends digital object with session-specific data)
+ * Only populated when source_type === 'jsonl' and bucket === 'inbox'
+ */
+export interface ChatSessionMetadata extends DigitalObjectMetadata {
+    session_id: string;
+    session_start: string;
+    session_end: string;
+    commands: string[];
+    message_count: number;
+    participants: string[];
+    models_used?: string[];
+}
+/**
+ * Session Index Entry (for query routing)
+ * Derived from ChatSessionMetadata, optimized for search
+ */
+export interface SessionIndexEntry {
+    session_id: string;
+    date: string;
+    commands: string[];
+    topics: string[];
+    full_log_path: string;
+    message_count: number;
+    participants: string[];
+}
+export interface RadialDistillRequest {
+    seed?: {
+        query?: string;
+        compound_ids?: string[];
+        buckets?: string[];
+    };
+    radius?: number;
+    max_radius?: number;
+    output_format?: 'yaml' | 'json' | 'decision-records';
+    output_path?: string;
+    export_to_inbox?: boolean;
+    auto_save?: boolean;
+}
+export interface RadialDistillResult {
+    stats: {
+        compounds_processed: number;
+        blocks_total: number;
+        blocks_unique: number;
+        decision_records: number;
+        compression_ratio: string;
+        duration_ms: number;
+        memory_peak_mb: number;
+    };
+    output: {
+        format: string;
+        path?: string;
+        size_bytes: number;
+        records_created?: number;
+    };
+    provenance: {
+        source_compounds: string[];
+        distilled_at: string;
+        parameters: RadialDistillRequest;
+    };
+    digital_objects?: DigitalObjectMetadata[];
+    session_index?: SessionIndexEntry[];
+}
+/**
+ * Main distillation function
+ */
+export declare function radialDistill(request: RadialDistillRequest): Promise<RadialDistillResult>;
+//# sourceMappingURL=radial-distiller-v2.d.ts.map

package/engine/dist/services/distillation/radial-distiller-v2.d.ts.map

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