@quiltdata/benchling-webhook 0.5.4 → 0.6.1-20251104T043302Z

package/dist/bin/commands/deploy.js

@@ -9,7 +9,9 @@ const chalk_1 = __importDefault(require("chalk"));
 const ora_1 = __importDefault(require("ora"));
 const boxen_1 = __importDefault(require("boxen"));
 const enquirer_1 = require("enquirer");
+const client_secrets_manager_1 = require("@aws-sdk/client-secrets-manager");
 const config_1 = require("../../lib/utils/config");
+const config_resolver_1 = require("../../lib/utils/config-resolver");
 const benchling_webhook_1 = require("../benchling-webhook");
 async function deployCommand(options) {
     console.log((0, boxen_1.default)(chalk_1.default.bold("Benchling Webhook Deployment"), {
@@ -18,51 +20,137 @@ async function deployCommand(options) {
         borderStyle: "round",
     }));
     console.log();
-    // 1. Load configuration
-    const spinner = (0, ora_1.default)("Loading configuration...").start();
-    let config = (0, config_1.loadConfigSync)(options);
-    // 2. Attempt inference if catalog is available
-    if (config.quiltCatalog) {
-        spinner.text = "Inferring configuration from catalog...";
-        const inferenceResult = await (0, benchling_webhook_1.inferConfiguration)(config.quiltCatalog);
-        if (inferenceResult.success) {
-            config = (0, config_1.mergeInferredConfig)(config, inferenceResult.inferredVars);
-            spinner.succeed("Configuration loaded and inferred");
-        }
-        else {
-            spinner.warn(`Configuration loaded (inference failed: ${inferenceResult.error})`);
+    // Get required parameters
+    const quiltStackArn = options.quiltStackArn || process.env.QUILT_STACK_ARN;
+    // Use default secret name if not provided
+    const benchlingSecret = options.benchlingSecret || process.env.BENCHLING_SECRET || "@quiltdata/benchling-webhook";
+    // Validate required parameter
+    if (!quiltStackArn) {
+        console.error(chalk_1.default.red.bold("❌ Missing Required Parameter\n"));
+        console.error(chalk_1.default.red("  --quilt-stack-arn is required"));
+        console.log();
+        console.log(chalk_1.default.yellow("Usage:"));
+        console.log(chalk_1.default.cyan("  npx @quiltdata/benchling-webhook deploy --quilt-stack-arn <arn>"));
+        console.log();
+        console.log(chalk_1.default.yellow("Example:"));
+        console.log(chalk_1.default.cyan("  npx @quiltdata/benchling-webhook deploy \\"));
+        console.log(chalk_1.default.cyan("    --quilt-stack-arn \"arn:aws:cloudformation:us-east-1:123456789012:stack/QuiltStack/abc123\""));
+        console.log();
+        process.exit(1);
+    }
+    // Deploy
+    return await deploy(quiltStackArn, benchlingSecret, options);
+}
+/**
+ * Check if a secret exists in AWS Secrets Manager
+ */
+async function checkSecretExists(secretName, region) {
+    try {
+        const client = new client_secrets_manager_1.SecretsManagerClient({ region });
+        await client.send(new client_secrets_manager_1.DescribeSecretCommand({ SecretId: secretName }));
+        return true;
+    }
+    catch (error) {
+        if (error && typeof error === "object" && "name" in error && error.name === "ResourceNotFoundException") {
+            return false;
         }
+        // For other errors (e.g., permission issues), throw them
+        throw error;
+    }
+}
+/**
+ * Run npm run config to create the secret
+ */
+function runConfigCommand(secretName, region, envFile = ".env") {
+    console.log();
+    console.log(chalk_1.default.yellow("📝 Secret not found. Running configuration setup..."));
+    console.log();
+    const result = (0, child_process_1.spawnSync)("npm", ["run", "config", "--", "--secret-name", secretName, "--region", region, "--env-file", envFile], {
+        stdio: "inherit",
+        shell: true,
+    });
+    if (result.status !== 0) {
+        console.log();
+        console.log(chalk_1.default.red("❌ Failed to create secret. Please run:"));
+        console.log(chalk_1.default.cyan(`   npm run config -- --secret-name ${secretName} --region ${region}`));
+        console.log();
+        return false;
     }
-    else {
-        spinner.succeed("Configuration loaded");
+    console.log();
+    return true;
+}
+/**
+ * Deploy the Benchling webhook stack
+ */
+async function deploy(quiltStackArn, benchlingSecret, options) {
+    const spinner = (0, ora_1.default)("Validating parameters...").start();
+    // Parse stack ARN to extract region/account
+    let parsed;
+    try {
+        parsed = (0, config_resolver_1.parseStackArn)(quiltStackArn);
+        spinner.succeed("Stack ARN validated");
     }
-    // 3. Validate configuration
-    spinner.start("Validating configuration...");
-    const validation = (0, config_1.validateConfig)(config);
-    if (!validation.valid) {
-        spinner.fail("Configuration validation failed");
+    catch (error) {
+        spinner.fail("Invalid Stack ARN");
+        console.log();
+        if (error instanceof config_resolver_1.ConfigResolverError) {
+            console.error(error.format());
+        }
+        else {
+            console.error(chalk_1.default.red(error.message));
+        }
         console.log();
-        console.error(chalk_1.default.red.bold("❌ Configuration Error\n"));
-        console.error((0, config_1.formatValidationErrors)(validation));
-        console.log(chalk_1.default.yellow("To fix this, you can:"));
-        console.log("  1. Run interactive setup: " + chalk_1.default.cyan("npx @quiltdata/benchling-webhook init"));
-        console.log("  2. Create/edit .env file with required values");
-        console.log("  3. Pass values as CLI options");
+        console.log(chalk_1.default.yellow("Expected format:"));
+        console.log("  arn:aws:cloudformation:region:account:stack/name/id");
         console.log();
-        console.log("For help: " + chalk_1.default.cyan("npx @quiltdata/benchling-webhook --help"));
+        console.log(chalk_1.default.yellow("Example:"));
+        console.log("  arn:aws:cloudformation:us-east-1:123456789012:stack/QuiltStack/abc-123");
         process.exit(1);
     }
-    spinner.succeed("Configuration validated");
-    if (validation.warnings.length > 0) {
-        console.log();
-        for (const warning of validation.warnings) {
-            console.log(chalk_1.default.yellow(`  ⚠ ${warning}`));
+    // Use region from stack ARN, but allow override from CLI
+    const deployRegion = options.region || parsed.region;
+    const deployAccount = parsed.account;
+    // Check if secret exists, create if needed
+    spinner.start("Checking if Benchling secret exists...");
+    try {
+        const secretExists = await checkSecretExists(benchlingSecret, deployRegion);
+        if (!secretExists) {
+            spinner.info(`Secret '${benchlingSecret}' not found`);
+            // Ask user if they want to create it
+            const response = await (0, enquirer_1.prompt)({
+                type: "confirm",
+                name: "createSecret",
+                message: `Would you like to create the secret '${benchlingSecret}' now using your .env file?`,
+                initial: true,
+            });
+            if (response.createSecret) {
+                const created = runConfigCommand(benchlingSecret, deployRegion, options.envFile || ".env");
+                if (!created) {
+                    process.exit(1);
+                }
+                spinner.succeed(`Secret '${benchlingSecret}' created successfully`);
+            }
+            else {
+                spinner.fail("Secret is required for deployment");
+                console.log();
+                console.log(chalk_1.default.yellow("To create the secret manually, run:"));
+                console.log(chalk_1.default.cyan(`  npm run config -- --secret-name ${benchlingSecret} --region ${deployRegion}`));
+                console.log();
+                process.exit(1);
+            }
+        }
+        else {
+            spinner.succeed(`Secret '${benchlingSecret}' exists`);
         }
     }
-    // 4. Check CDK bootstrap
+    catch (error) {
+        spinner.warn("Could not verify secret existence (will attempt deployment anyway)");
+        console.log(chalk_1.default.dim(`  ${error.message}`));
+    }
+    // Check CDK bootstrap
     if (options.bootstrapCheck !== false) {
         spinner.start("Checking CDK bootstrap status...");
-        const bootstrapStatus = await (0, benchling_webhook_1.checkCdkBootstrap)(config.cdkAccount, config.cdkRegion);
+        const bootstrapStatus = await (0, benchling_webhook_1.checkCdkBootstrap)(deployAccount, deployRegion);
         if (!bootstrapStatus.bootstrapped) {
             spinner.fail("CDK is not bootstrapped");
             console.log();
@@ -86,38 +174,23 @@ async function deployCommand(options) {
             spinner.succeed(`CDK is bootstrapped (${bootstrapStatus.status})`);
         }
     }
-    // 5. Display deployment plan
+    // Display deployment plan
     console.log();
     console.log(chalk_1.default.bold("Deployment Plan"));
     console.log(chalk_1.default.gray("─".repeat(80)));
-    console.log(`  ${chalk_1.default.bold("Stack:")}                      BenchlingWebhookStack`);
-    console.log(`  ${chalk_1.default.bold("Account:")}                    ${config.cdkAccount}`);
-    console.log(`  ${chalk_1.default.bold("Region:")}                     ${config.cdkRegion}`);
+    console.log(`  ${chalk_1.default.bold("Stack:")}                     BenchlingWebhookStack`);
+    console.log(`  ${chalk_1.default.bold("Account:")}                   ${deployAccount}`);
+    console.log(`  ${chalk_1.default.bold("Region:")}                    ${deployRegion}`);
     console.log();
     console.log(chalk_1.default.bold("  Stack Parameters:"));
-    console.log(`    ${chalk_1.default.bold("Quilt Catalog:")}            ${config.quiltCatalog}`);
-    console.log(`    ${chalk_1.default.bold("Quilt Database:")}           ${config.quiltDatabase}`);
-    console.log(`    ${chalk_1.default.bold("Quilt User Bucket:")}        ${config.quiltUserBucket}`);
-    console.log(`    ${chalk_1.default.bold("Benchling Tenant:")}         ${config.benchlingTenant}`);
-    console.log(`    ${chalk_1.default.bold("Benchling Client ID:")}      ${config.benchlingClientId}`);
-    console.log(`    ${chalk_1.default.bold("Benchling Client Secret:")}  ${config.benchlingClientSecret ? "***" + config.benchlingClientSecret.slice(-4) : "(not set)"}`);
-    if (config.benchlingAppDefinitionId) {
-        console.log(`    ${chalk_1.default.bold("Benchling App ID:")}        ${config.benchlingAppDefinitionId}`);
-    }
-    console.log(`    ${chalk_1.default.bold("Queue ARN:")}                ${config.queueArn}`);
-    console.log(`    ${chalk_1.default.bold("Package Prefix:")}           ${config.pkgPrefix || "benchling"}`);
-    console.log(`    ${chalk_1.default.bold("Package Key:")}              ${config.pkgKey || "experiment_id"}`);
-    console.log(`    ${chalk_1.default.bold("Log Level:")}                ${config.logLevel || "INFO"}`);
-    if (config.webhookAllowList) {
-        console.log(`    ${chalk_1.default.bold("Webhook Allow List:")}      ${config.webhookAllowList}`);
-    }
-    console.log(`    ${chalk_1.default.bold("Webhook Verification:")}    ${config.enableWebhookVerification ?? "true"}`);
-    console.log(`    ${chalk_1.default.bold("Create ECR Repository:")}   ${config.createEcrRepository || "false"}`);
-    console.log(`    ${chalk_1.default.bold("ECR Repository Name:")}     ${config.ecrRepositoryName || "quiltdata/benchling"}`);
-    console.log(`    ${chalk_1.default.bold("Docker Image Tag:")}        ${config.imageTag || "latest"}`);
+    console.log(`    ${chalk_1.default.bold("Quilt Stack ARN:")}         ${(0, config_1.maskArn)(quiltStackArn)}`);
+    console.log(`    ${chalk_1.default.bold("Benchling Secret:")}        ${benchlingSecret}`);
+    console.log(`    ${chalk_1.default.bold("Docker Image Tag:")}        ${options.imageTag || "latest"}`);
+    console.log();
+    console.log(chalk_1.default.dim("  ℹ️  All other configuration will be resolved from AWS at runtime"));
     console.log(chalk_1.default.gray("─".repeat(80)));
     console.log();
-    // 6. Confirm (unless --yes)
+    // Confirm (unless --yes)
     if (!options.yes) {
         const response = await (0, enquirer_1.prompt)({
             type: "confirm",
@@ -131,31 +204,16 @@ async function deployCommand(options) {
         }
         console.log();
     }
-    // 7. Create stack (synthesis)
-    spinner.start("Synthesizing CDK stack...");
+    // Deploy using CDK CLI
+    spinner.start("Deploying to AWS (this may take a few minutes)...");
+    spinner.stop();
+    console.log();
     try {
-        const result = (0, benchling_webhook_1.createStack)(config);
-        spinner.succeed("Stack synthesized");
-        // 8. Deploy using CDK CLI
-        spinner.start("Deploying to AWS (this may take a few minutes)...");
-        spinner.stop(); // Stop spinner for CDK output
-        console.log(); // New line for CDK output
-        // Execute CDK deploy directly - the app.synth() will be called by CDK
-        // We need to synthesize to cdk.out and then deploy
-        result.app.synth();
-        // Build CloudFormation parameters to pass explicitly
+        // Build CloudFormation parameters
         const parameters = [
-            `ImageTag=${config.imageTag || "latest"}`,
-            `BucketName=${config.quiltUserBucket}`,
-            `PackagePrefix=${config.pkgPrefix || "benchling"}`,
-            `PackageKey=${config.pkgKey || "experiment_id"}`,
-            `QueueArn=${config.queueArn}`,
-            `QuiltDatabase=${config.quiltDatabase}`,
-            `BenchlingTenant=${config.benchlingTenant}`,
-            `LogLevel=${config.logLevel || "INFO"}`,
-            `EnableWebhookVerification=${config.enableWebhookVerification ?? "true"}`,
-            `QuiltCatalog=${config.quiltCatalog || "open.quiltdata.com"}`,
-            `WebhookAllowList=${config.webhookAllowList || ""}`,
+            `QuiltStackARN=${quiltStackArn}`,
+            `BenchlingSecret=${benchlingSecret}`,
+            `ImageTag=${options.imageTag || "latest"}`,
         ];
         const parametersArg = parameters.map(p => `--parameters ${p}`).join(" ");
         const cdkCommand = `npx cdk deploy --require-approval ${options.requireApproval || "never"} ${parametersArg}`;
@@ -163,19 +221,22 @@ async function deployCommand(options) {
             stdio: "inherit",
             env: {
                 ...process.env,
-                CDK_DEFAULT_ACCOUNT: config.cdkAccount,
-                CDK_DEFAULT_REGION: config.cdkRegion,
+                CDK_DEFAULT_ACCOUNT: deployAccount,
+                CDK_DEFAULT_REGION: deployRegion,
+                QUILT_STACK_ARN: quiltStackArn,
+                BENCHLING_SECRET: benchlingSecret,
             },
         });
+        console.log();
         spinner.succeed("Stack deployed successfully");
-        // 9. Get stack outputs
+        // Get stack outputs
         spinner.start("Retrieving stack outputs...");
         let webhookUrl = "";
         try {
             // eslint-disable-next-line @typescript-eslint/no-require-imports
             const { CloudFormationClient, DescribeStacksCommand } = require("@aws-sdk/client-cloudformation");
             const cloudformation = new CloudFormationClient({
-                region: config.cdkRegion,
+                region: deployRegion,
             });
             const command = new DescribeStacksCommand({
                 StackName: "BenchlingWebhookStack",
@@ -191,7 +252,7 @@ async function deployCommand(options) {
         catch {
             spinner.warn("Could not retrieve stack outputs");
         }
-        // 10. Test the webhook endpoint
+        // Test the webhook endpoint
         if (webhookUrl) {
             console.log();
             spinner.start("Testing webhook endpoint...");
@@ -211,11 +272,11 @@ async function deployCommand(options) {
                 spinner.warn("Could not test webhook endpoint");
             }
         }
-        // 11. Success message
+        // Success message
         console.log();
         console.log((0, boxen_1.default)(`${chalk_1.default.green.bold("✓ Deployment completed successfully!")}\n\n` +
-            `Stack:  ${chalk_1.default.cyan(result.stackName)}\n` +
-            `Region: ${chalk_1.default.cyan(config.cdkRegion)}\n` +
+            `Stack:  ${chalk_1.default.cyan("BenchlingWebhookStack")}\n` +
+            `Region: ${chalk_1.default.cyan(deployRegion)}\n` +
             (webhookUrl ? `Webhook URL: ${chalk_1.default.cyan(webhookUrl)}\n\n` : "\n") +
             `${chalk_1.default.bold("Next steps:")}\n` +
             "  1. Set the webhook URL in your Benchling app settings:\n" +

package/dist/bin/commands/deploy.js.map

@@ -1 +1 @@
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package/dist/bin/commands/setup-wizard.d.ts

@@ -0,0 +1,22 @@
+/**
+ * Setup Wizard Command
+ *
+ * Launches the interactive setup wizard when npx is run without arguments.
+ * This provides a guided experience for first-time users to configure and
+ * deploy the Benchling webhook integration.
+ *
+ * @module commands/setup-wizard
+ */
+/**
+ * Setup wizard command handler
+ *
+ * Provides guided setup experience:
+ * 1. Welcome message and prerequisites check
+ * 2. Configuration collection via install-wizard
+ * 3. Automatic deployment (optional)
+ * 4. Integration testing (optional)
+ *
+ * @returns Promise that resolves when wizard completes
+ */
+export declare function setupWizardCommand(): Promise<void>;
+//# sourceMappingURL=setup-wizard.d.ts.map

package/dist/bin/commands/setup-wizard.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"setup-wizard.d.ts","sourceRoot":"","sources":["../../../bin/commands/setup-wizard.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAKH;;;;;;;;;;GAUG;AACH,wBAAsB,kBAAkB,IAAI,OAAO,CAAC,IAAI,CAAC,CAmBxD"}

package/dist/bin/commands/setup-wizard.js

@@ -0,0 +1,47 @@
+"use strict";
+/**
+ * Setup Wizard Command
+ *
+ * Launches the interactive setup wizard when npx is run without arguments.
+ * This provides a guided experience for first-time users to configure and
+ * deploy the Benchling webhook integration.
+ *
+ * @module commands/setup-wizard
+ */
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.setupWizardCommand = setupWizardCommand;
+const chalk_1 = __importDefault(require("chalk"));
+const install_wizard_1 = require("../../scripts/install-wizard");
+/**
+ * Setup wizard command handler
+ *
+ * Provides guided setup experience:
+ * 1. Welcome message and prerequisites check
+ * 2. Configuration collection via install-wizard
+ * 3. Automatic deployment (optional)
+ * 4. Integration testing (optional)
+ *
+ * @returns Promise that resolves when wizard completes
+ */
+async function setupWizardCommand() {
+    console.log(chalk_1.default.bold.cyan("\n🚀 Benchling Webhook Setup Wizard\n"));
+    console.log("This wizard will guide you through:");
+    console.log("  1. Collecting configuration (Benchling credentials, AWS settings)");
+    console.log("  2. Validating credentials and access");
+    console.log("  3. Saving configuration for deployment\n");
+    console.log(chalk_1.default.dim("Press Ctrl+C at any time to exit\n"));
+    // Run the existing install wizard
+    await (0, install_wizard_1.runInstallWizard)({
+        nonInteractive: false,
+        skipValidation: false,
+    });
+    console.log(chalk_1.default.green.bold("\n✓ Setup complete!\n"));
+    console.log("Next steps:");
+    console.log(chalk_1.default.cyan("  • Run deployment: npx @quiltdata/benchling-webhook deploy"));
+    console.log(chalk_1.default.cyan("  • Test integration: npx @quiltdata/benchling-webhook test"));
+    console.log(chalk_1.default.dim("\nFor more information: https://github.com/quiltdata/benchling-webhook\n"));
+}
+//# sourceMappingURL=setup-wizard.js.map

package/dist/bin/commands/setup-wizard.js.map

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package/dist/bin/config-profiles.d.ts

@@ -0,0 +1,59 @@
+#!/usr/bin/env node
+/**
+ * Configuration Profile Management CLI
+ *
+ * Provides commands for creating, listing, and managing configuration profiles.
+ * Supports AWS profile integration and profile validation.
+ *
+ * Usage:
+ *   npx ts-node bin/config-profiles.ts list
+ *   npx ts-node bin/config-profiles.ts create <profile-name>
+ *   npx ts-node bin/config-profiles.ts show <profile-name>
+ *   npx ts-node bin/config-profiles.ts validate <profile-name>
+ *
+ * @module bin/config-profiles
+ */
+import { ProfileName } from "../lib/types/config";
+/**
+ * Profile Manager
+ *
+ * Manages configuration profiles with validation and AWS integration.
+ */
+declare class ProfileManager {
+    private xdgConfig;
+    constructor();
+    /**
+     * Lists all available profiles
+     */
+    listProfiles(): void;
+    /**
+     * Creates a new profile
+     *
+     * @param profileName - Name of the profile to create
+     * @param options - Creation options
+     */
+    createProfile(profileName: ProfileName, options?: {
+        awsProfile?: string;
+        description?: string;
+    }): void;
+    /**
+     * Shows detailed information about a profile
+     *
+     * @param profileName - Name of the profile to show
+     */
+    showProfile(profileName: ProfileName): void;
+    /**
+     * Validates a profile configuration
+     *
+     * @param profileName - Name of the profile to validate
+     */
+    validateProfile(profileName: ProfileName): void;
+    /**
+     * Prints configuration object in a readable format
+     *
+     * @param config - Configuration object to print
+     */
+    private printConfig;
+}
+export { ProfileManager };
+//# sourceMappingURL=config-profiles.d.ts.map

package/dist/bin/config-profiles.d.ts.map

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