@pga-ai/core 0.4.0 → 0.8.0

package/dist/utils/tokens.js

@@ -0,0 +1,16 @@
+export function estimateTokenCount(text) {
+    if (!text)
+        return 0;
+    return Math.ceil(text.length / 4);
+}
+export function tokenEfficiency(compositeFitness, tokenCount) {
+    if (tokenCount <= 0)
+        return 0;
+    return compositeFitness / tokenCount;
+}
+export function compressionRatio(originalTokens, compressedTokens) {
+    if (originalTokens <= 0)
+        return 1;
+    return compressedTokens / originalTokens;
+}
+//# sourceMappingURL=tokens.js.map

package/dist/utils/tokens.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tokens.js","sourceRoot":"","sources":["../../src/utils/tokens.ts"],"names":[],"mappings":"AAmBA,MAAM,UAAU,kBAAkB,CAAC,IAAY;IAC3C,IAAI,CAAC,IAAI;QAAE,OAAO,CAAC,CAAC;IACpB,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;AACtC,CAAC;AAYD,MAAM,UAAU,eAAe,CAAC,gBAAwB,EAAE,UAAkB;IACxE,IAAI,UAAU,IAAI,CAAC;QAAE,OAAO,CAAC,CAAC;IAC9B,OAAO,gBAAgB,GAAG,UAAU,CAAC;AACzC,CAAC;AASD,MAAM,UAAU,gBAAgB,CAAC,cAAsB,EAAE,gBAAwB;IAC7E,IAAI,cAAc,IAAI,CAAC;QAAE,OAAO,CAAC,CAAC;IAClC,OAAO,gBAAgB,GAAG,cAAc,CAAC;AAC7C,CAAC"}

package/dist/wrap/FunctionLLMAdapter.d.ts

@@ -0,0 +1,9 @@
+import type { LLMAdapter, Message, ChatOptions, ChatResponse } from '../interfaces/LLMAdapter.js';
+export declare class FunctionLLMAdapter implements LLMAdapter {
+    private fn;
+    readonly name: string;
+    readonly model: string;
+    constructor(fn: (input: string) => Promise<string>, name: string);
+    chat(messages: Message[], _options?: ChatOptions): Promise<ChatResponse>;
+}
+//# sourceMappingURL=FunctionLLMAdapter.d.ts.map

package/dist/wrap/FunctionLLMAdapter.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"FunctionLLMAdapter.d.ts","sourceRoot":"","sources":["../../src/wrap/FunctionLLMAdapter.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,UAAU,EAAE,OAAO,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,6BAA6B,CAAC;AAElG,qBAAa,kBAAmB,YAAW,UAAU;IAK7C,OAAO,CAAC,EAAE;IAJd,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;gBAGX,EAAE,EAAE,CAAC,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC,MAAM,CAAC,EAC9C,IAAI,EAAE,MAAM;IAMV,IAAI,CAAC,QAAQ,EAAE,OAAO,EAAE,EAAE,QAAQ,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,YAAY,CAAC;CAiBjF"}

package/dist/wrap/FunctionLLMAdapter.js

@@ -0,0 +1,26 @@
+export class FunctionLLMAdapter {
+    fn;
+    name;
+    model;
+    constructor(fn, name) {
+        this.fn = fn;
+        this.name = name;
+        this.model = `function:${name}`;
+    }
+    async chat(messages, _options) {
+        const userMessages = messages.filter(m => m.role === 'user');
+        const input = userMessages[userMessages.length - 1]?.content ?? '';
+        const startTime = Date.now();
+        const content = await this.fn(input);
+        const duration = Date.now() - startTime;
+        return {
+            content,
+            usage: {
+                inputTokens: Math.ceil(input.length / 4),
+                outputTokens: Math.ceil(content.length / 4),
+            },
+            metadata: { duration, adapter: 'function' },
+        };
+    }
+}
+//# sourceMappingURL=FunctionLLMAdapter.js.map

package/dist/wrap/FunctionLLMAdapter.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"FunctionLLMAdapter.js","sourceRoot":"","sources":["../../src/wrap/FunctionLLMAdapter.ts"],"names":[],"mappings":"AAWA,MAAM,OAAO,kBAAkB;IAKf;IAJH,IAAI,CAAS;IACb,KAAK,CAAS;IAEvB,YACY,EAAsC,EAC9C,IAAY;QADJ,OAAE,GAAF,EAAE,CAAoC;QAG9C,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;QACjB,IAAI,CAAC,KAAK,GAAG,YAAY,IAAI,EAAE,CAAC;IACpC,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,QAAmB,EAAE,QAAsB;QAClD,MAAM,YAAY,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,MAAM,CAAC,CAAC;QAC7D,MAAM,KAAK,GAAG,YAAY,CAAC,YAAY,CAAC,MAAM,GAAG,CAAC,CAAC,EAAE,OAAO,IAAI,EAAE,CAAC;QAEnE,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QAC7B,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC;QACrC,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS,CAAC;QAExC,OAAO;YACH,OAAO;YACP,KAAK,EAAE;gBACH,WAAW,EAAE,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC;gBACxC,YAAY,EAAE,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC;aAC9C;YACD,QAAQ,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE,UAAU,EAAE;SAC9C,CAAC;IACN,CAAC;CACJ"}

package/dist/wrap/GenomeBuilder.d.ts

@@ -0,0 +1,13 @@
+import type { Genome, GeneAllele } from '../types/index.js';
+import type { GeneCategory } from '../types/GenomeV2.js';
+import type { WrapOptions } from './WrapOptions.js';
+export declare class GenomeBuilder {
+    static build(options: WrapOptions): Genome;
+    static buildLayer0(options: WrapOptions): GeneAllele[];
+    static buildLayer1(options: WrapOptions): GeneAllele[];
+    static buildLayer2(options: WrapOptions): GeneAllele[];
+    static categorizeGene(content: string): GeneCategory;
+    private static chunkContent;
+    private static mapMutationRate;
+}
+//# sourceMappingURL=GenomeBuilder.d.ts.map

package/dist/wrap/GenomeBuilder.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"GenomeBuilder.d.ts","sourceRoot":"","sources":["../../src/wrap/GenomeBuilder.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,MAAM,EAAE,UAAU,EAAkC,MAAM,mBAAmB,CAAC;AAC5F,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC;AACzD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAEpD,qBAAa,aAAa;IAQtB,MAAM,CAAC,KAAK,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM;IAuC1C,MAAM,CAAC,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,UAAU,EAAE;IA6DtD,MAAM,CAAC,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,UAAU,EAAE;IAwEtD,MAAM,CAAC,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,UAAU,EAAE;IAyCtD,MAAM,CAAC,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,YAAY;IAWpD,OAAO,CAAC,MAAM,CAAC,YAAY;IAS3B,OAAO,CAAC,MAAM,CAAC,eAAe;CAKjC"}

package/dist/wrap/GenomeBuilder.js

@@ -0,0 +1,222 @@
+export class GenomeBuilder {
+    static build(options) {
+        const now = new Date();
+        const genomeId = `wrap_${Date.now()}_${Math.random().toString(36).substr(2, 9)}`;
+        const layer0 = GenomeBuilder.buildLayer0(options);
+        const layer1 = GenomeBuilder.buildLayer1(options);
+        const layer2 = GenomeBuilder.buildLayer2(options);
+        const autonomous = {
+            continuousEvolution: true,
+            evolveEveryN: options.evolution?.evolveEveryN ?? 10,
+            autoMutateOnDrift: options.evolution?.autoMutateOnDrift ?? true,
+            autoCompressOnPressure: options.evolution?.autoCompressOnPressure ?? true,
+            enableSwarm: options.evolution?.enableSwarm ?? false,
+            enableSelfModel: options.enableSelfModel ?? false,
+            enableMetacognition: options.enableMetacognition ?? false,
+            enableEmotionalModel: options.enableEmotionalModel ?? false,
+            agentPurpose: options.agentPurpose ?? options.systemPrompt.split('\n')[0].slice(0, 200),
+        };
+        const config = {
+            enableSandbox: true,
+            mutationRate: GenomeBuilder.mapMutationRate(options.evolution?.mode),
+            autonomous,
+        };
+        return {
+            id: genomeId,
+            name: options.name ?? 'wrapped-agent',
+            config,
+            layers: { layer0, layer1, layer2 },
+            familyId: options.familyId,
+            version: 1,
+            createdAt: now,
+            updatedAt: now,
+        };
+    }
+    static buildLayer0(options) {
+        const now = new Date();
+        const alleles = [];
+        if (options.protect && options.protect.length > 0) {
+            for (const [i, rule] of options.protect.entries()) {
+                alleles.push({
+                    gene: i === 0 ? 'core-identity' : `security-rule-${i}`,
+                    variant: 'default',
+                    content: rule,
+                    fitness: 0.5,
+                    status: 'active',
+                    createdAt: now,
+                });
+            }
+        }
+        else {
+            const firstParagraph = options.systemPrompt.split('\n\n')[0] || options.systemPrompt;
+            alleles.push({
+                gene: 'core-identity',
+                variant: 'default',
+                content: firstParagraph,
+                fitness: 0.5,
+                status: 'active',
+                createdAt: now,
+            });
+            const immutablePattern = /^(NEVER|ALWAYS|MUST|DO NOT|FORBIDDEN|PROHIBITED)/i;
+            const rules = options.systemPrompt
+                .split('\n')
+                .filter(l => immutablePattern.test(l.trim()))
+                .map(l => l.trim());
+            if (rules.length > 0) {
+                alleles.push({
+                    gene: 'security-gate',
+                    variant: 'default',
+                    content: rules.join('\n'),
+                    fitness: 0.5,
+                    status: 'active',
+                    createdAt: now,
+                });
+            }
+        }
+        if (alleles.length < 2) {
+            alleles.push({
+                gene: 'ethics',
+                variant: 'default',
+                content: 'Be helpful, harmless, and honest. Respect user privacy.',
+                fitness: 0.5,
+                status: 'active',
+                createdAt: now,
+            });
+        }
+        return alleles;
+    }
+    static buildLayer1(options) {
+        const now = new Date();
+        const alleles = [];
+        if (options.evolve && options.evolve.length > 0) {
+            for (const item of options.evolve) {
+                if (typeof item === 'string') {
+                    const category = GenomeBuilder.categorizeGene(item);
+                    alleles.push({
+                        gene: category,
+                        variant: 'default',
+                        content: item,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+                else {
+                    alleles.push({
+                        gene: item.category,
+                        variant: 'default',
+                        content: item.content,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+            }
+        }
+        else {
+            const immutablePattern = /^(NEVER|ALWAYS|MUST|DO NOT|FORBIDDEN|PROHIBITED)/i;
+            const firstParaEnd = options.systemPrompt.indexOf('\n\n');
+            const operativeContent = firstParaEnd > -1
+                ? options.systemPrompt.slice(firstParaEnd + 2)
+                : '';
+            const operativeLines = operativeContent
+                .split('\n')
+                .filter(l => l.trim().length > 10)
+                .filter(l => !immutablePattern.test(l.trim()));
+            if (operativeLines.length > 0) {
+                const chunks = GenomeBuilder.chunkContent(operativeLines.join('\n'), 3);
+                for (const chunk of chunks) {
+                    const category = GenomeBuilder.categorizeGene(chunk);
+                    alleles.push({
+                        gene: category,
+                        variant: 'default',
+                        content: chunk,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+            }
+        }
+        if (alleles.length === 0) {
+            alleles.push({
+                gene: 'reasoning',
+                variant: 'default',
+                content: 'Think step-by-step and provide clear, accurate responses.',
+                fitness: 0.5,
+                status: 'active',
+                createdAt: now,
+            });
+        }
+        return alleles;
+    }
+    static buildLayer2(options) {
+        const now = new Date();
+        const alleles = [];
+        if (options.adapt && options.adapt.length > 0) {
+            for (const item of options.adapt) {
+                if (typeof item === 'string') {
+                    alleles.push({
+                        gene: `adapt-${item.toLowerCase().replace(/\s+/g, '-')}`,
+                        variant: 'default',
+                        content: `Adapt ${item} based on user preferences and context.`,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+                else {
+                    alleles.push({
+                        gene: `adapt-${item.trait}`,
+                        variant: 'default',
+                        content: item.content,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+            }
+        }
+        else {
+            alleles.push({
+                gene: 'communication-style',
+                variant: 'default',
+                content: 'Communicate clearly and adapt to user preferences.',
+                fitness: 0.5,
+                status: 'active',
+                createdAt: now,
+            });
+        }
+        return alleles;
+    }
+    static categorizeGene(content) {
+        const lower = content.toLowerCase();
+        if (/tool|api|function|endpoint|call|invoke/.test(lower))
+            return 'tool-usage';
+        if (/code|program|syntax|debug|implement|refactor/.test(lower))
+            return 'coding-patterns';
+        if (/data|parse|transform|format|csv|json|schema/.test(lower))
+            return 'data-processing';
+        if (/error|exception|retry|fallback|recover|handle/.test(lower))
+            return 'error-handling';
+        if (/tone|style|write|communicate|format.*response|verbose/.test(lower))
+            return 'communication';
+        return 'reasoning';
+    }
+    static chunkContent(content, maxChunks) {
+        const paragraphs = content.split('\n\n').filter(p => p.trim().length > 0);
+        if (paragraphs.length <= maxChunks)
+            return paragraphs;
+        const result = paragraphs.slice(0, maxChunks - 1);
+        result.push(paragraphs.slice(maxChunks - 1).join('\n\n'));
+        return result;
+    }
+    static mapMutationRate(mode) {
+        if (mode === 'conservative')
+            return 'slow';
+        if (mode === 'aggressive')
+            return 'aggressive';
+        return 'balanced';
+    }
+}
+//# sourceMappingURL=GenomeBuilder.js.map

package/dist/wrap/GenomeBuilder.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"GenomeBuilder.js","sourceRoot":"","sources":["../../src/wrap/GenomeBuilder.ts"],"names":[],"mappings":"AAcA,MAAM,OAAO,aAAa;IAQtB,MAAM,CAAC,KAAK,CAAC,OAAoB;QAC7B,MAAM,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,MAAM,QAAQ,GAAG,QAAQ,IAAI,CAAC,GAAG,EAAE,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC;QAEjF,MAAM,MAAM,GAAG,aAAa,CAAC,WAAW,CAAC,OAAO,CAAC,CAAC;QAClD,MAAM,MAAM,GAAG,aAAa,CAAC,WAAW,CAAC,OAAO,CAAC,CAAC;QAClD,MAAM,MAAM,GAAG,aAAa,CAAC,WAAW,CAAC,OAAO,CAAC,CAAC;QAElD,MAAM,UAAU,GAAqB;YACjC,mBAAmB,EAAE,IAAI;YACzB,YAAY,EAAE,OAAO,CAAC,SAAS,EAAE,YAAY,IAAI,EAAE;YACnD,iBAAiB,EAAE,OAAO,CAAC,SAAS,EAAE,iBAAiB,IAAI,IAAI;YAC/D,sBAAsB,EAAE,OAAO,CAAC,SAAS,EAAE,sBAAsB,IAAI,IAAI;YACzE,WAAW,EAAE,OAAO,CAAC,SAAS,EAAE,WAAW,IAAI,KAAK;YACpD,eAAe,EAAE,OAAO,CAAC,eAAe,IAAI,KAAK;YACjD,mBAAmB,EAAE,OAAO,CAAC,mBAAmB,IAAI,KAAK;YACzD,oBAAoB,EAAE,OAAO,CAAC,oBAAoB,IAAI,KAAK;YAC3D,YAAY,EAAE,OAAO,CAAC,YAAY,IAAI,OAAO,CAAC,YAAY,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;SAC1F,CAAC;QAEF,MAAM,MAAM,GAAiB;YACzB,aAAa,EAAE,IAAI;YACnB,YAAY,EAAE,aAAa,CAAC,eAAe,CAAC,OAAO,CAAC,SAAS,EAAE,IAAI,CAAC;YACpE,UAAU;SACb,CAAC;QAEF,OAAO;YACH,EAAE,EAAE,QAAQ;YACZ,IAAI,EAAE,OAAO,CAAC,IAAI,IAAI,eAAe;YACrC,MAAM;YACN,MAAM,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE;YAClC,QAAQ,EAAE,OAAO,CAAC,QAAQ;YAC1B,OAAO,EAAE,CAAC;YACV,SAAS,EAAE,GAAG;YACd,SAAS,EAAE,GAAG;SACjB,CAAC;IACN,CAAC;IAGD,MAAM,CAAC,WAAW,CAAC,OAAoB;QACnC,MAAM,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,MAAM,OAAO,GAAiB,EAAE,CAAC;QAEjC,IAAI,OAAO,CAAC,OAAO,IAAI,OAAO,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAChD,KAAK,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,OAAO,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;gBAChD,OAAO,CAAC,IAAI,CAAC;oBACT,IAAI,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,iBAAiB,CAAC,EAAE;oBACtD,OAAO,EAAE,SAAS;oBAClB,OAAO,EAAE,IAAI;oBACb,OAAO,EAAE,GAAG;oBACZ,MAAM,EAAE,QAAiB;oBACzB,SAAS,EAAE,GAAG;iBACjB,CAAC,CAAC;YACP,CAAC;QACL,CAAC;aAAM,CAAC;YAEJ,MAAM,cAAc,GAAG,OAAO,CAAC,YAAY,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,OAAO,CAAC,YAAY,CAAC;YACrF,OAAO,CAAC,IAAI,CAAC;gBACT,IAAI,EAAE,eAAe;gBACrB,OAAO,EAAE,SAAS;gBAClB,OAAO,EAAE,cAAc;gBACvB,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,QAAiB;gBACzB,SAAS,EAAE,GAAG;aACjB,CAAC,CAAC;YAEH,MAAM,gBAAgB,GAAG,mDAAmD,CAAC;YAC7E,MAAM,KAAK,GAAG,OAAO,CAAC,YAAY;iBAC7B,KAAK,CAAC,IAAI,CAAC;iBACX,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;iBAC5C,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;YAExB,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACnB,OAAO,CAAC,IAAI,CAAC;oBACT,IAAI,EAAE,eAAe;oBACrB,OAAO,EAAE,SAAS;oBAClB,OAAO,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC;oBACzB,OAAO,EAAE,GAAG;oBACZ,MAAM,EAAE,QAAiB;oBACzB,SAAS,EAAE,GAAG;iBACjB,CAAC,CAAC;YACP,CAAC;QACL,CAAC;QAGD,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACrB,OAAO,CAAC,IAAI,CAAC;gBACT,IAAI,EAAE,QAAQ;gBACd,OAAO,EAAE,SAAS;gBAClB,OAAO,EAAE,yDAAyD;gBAClE,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,QAAiB;gBACzB,SAAS,EAAE,GAAG;aACjB,CAAC,CAAC;QACP,CAAC;QAED,OAAO,OAAO,CAAC;IACnB,CAAC;IAGD,MAAM,CAAC,WAAW,CAAC,OAAoB;QACnC,MAAM,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,MAAM,OAAO,GAAiB,EAAE,CAAC;QAEjC,IAAI,OAAO,CAAC,MAAM,IAAI,OAAO,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC9C,KAAK,MAAM,IAAI,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC;gBAChC,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;oBAC3B,MAAM,QAAQ,GAAG,aAAa,CAAC,cAAc,CAAC,IAAI,CAAC,CAAC;oBACpD,OAAO,CAAC,IAAI,CAAC;wBACT,IAAI,EAAE,QAAQ;wBACd,OAAO,EAAE,SAAS;wBAClB,OAAO,EAAE,IAAI;wBACb,OAAO,EAAE,GAAG;wBACZ,MAAM,EAAE,QAAiB;wBACzB,SAAS,EAAE,GAAG;qBACjB,CAAC,CAAC;gBACP,CAAC;qBAAM,CAAC;oBACJ,OAAO,CAAC,IAAI,CAAC;wBACT,IAAI,EAAE,IAAI,CAAC,QAAQ;wBACnB,OAAO,EAAE,SAAS;wBAClB,OAAO,EAAE,IAAI,CAAC,OAAO;wBACrB,OAAO,EAAE,GAAG;wBACZ,MAAM,EAAE,QAAiB;wBACzB,SAAS,EAAE,GAAG;qBACjB,CAAC,CAAC;gBACP,CAAC;YACL,CAAC;QACL,CAAC;aAAM,CAAC;YAEJ,MAAM,gBAAgB,GAAG,mDAAmD,CAAC;YAC7E,MAAM,YAAY,GAAG,OAAO,CAAC,YAAY,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;YAC1D,MAAM,gBAAgB,GAAG,YAAY,GAAG,CAAC,CAAC;gBACtC,CAAC,CAAC,OAAO,CAAC,YAAY,CAAC,KAAK,CAAC,YAAY,GAAG,CAAC,CAAC;gBAC9C,CAAC,CAAC,EAAE,CAAC;YAET,MAAM,cAAc,GAAG,gBAAgB;iBAClC,KAAK,CAAC,IAAI,CAAC;iBACX,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,EAAE,CAAC;iBACjC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;YAEnD,IAAI,cAAc,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBAC5B,MAAM,MAAM,GAAG,aAAa,CAAC,YAAY,CAAC,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;gBACxE,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;oBACzB,MAAM,QAAQ,GAAG,aAAa,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC;oBACrD,OAAO,CAAC,IAAI,CAAC;wBACT,IAAI,EAAE,QAAQ;wBACd,OAAO,EAAE,SAAS;wBAClB,OAAO,EAAE,KAAK;wBACd,OAAO,EAAE,GAAG;wBACZ,MAAM,EAAE,QAAiB;wBACzB,SAAS,EAAE,GAAG;qBACjB,CAAC,CAAC;gBACP,CAAC;YACL,CAAC;QACL,CAAC;QAGD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,OAAO,CAAC,IAAI,CAAC;gBACT,IAAI,EAAE,WAAW;gBACjB,OAAO,EAAE,SAAS;gBAClB,OAAO,EAAE,2DAA2D;gBACpE,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,QAAiB;gBACzB,SAAS,EAAE,GAAG;aACjB,CAAC,CAAC;QACP,CAAC;QAED,OAAO,OAAO,CAAC;IACnB,CAAC;IAGD,MAAM,CAAC,WAAW,CAAC,OAAoB;QACnC,MAAM,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,MAAM,OAAO,GAAiB,EAAE,CAAC;QAEjC,IAAI,OAAO,CAAC,KAAK,IAAI,OAAO,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC5C,KAAK,MAAM,IAAI,IAAI,OAAO,CAAC,KAAK,EAAE,CAAC;gBAC/B,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;oBAC3B,OAAO,CAAC,IAAI,CAAC;wBACT,IAAI,EAAE,SAAS,IAAI,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG,CAAC,EAAE;wBACxD,OAAO,EAAE,SAAS;wBAClB,OAAO,EAAE,SAAS,IAAI,yCAAyC;wBAC/D,OAAO,EAAE,GAAG;wBACZ,MAAM,EAAE,QAAiB;wBACzB,SAAS,EAAE,GAAG;qBACjB,CAAC,CAAC;gBACP,CAAC;qBAAM,CAAC;oBACJ,OAAO,CAAC,IAAI,CAAC;wBACT,IAAI,EAAE,SAAS,IAAI,CAAC,KAAK,EAAE;wBAC3B,OAAO,EAAE,SAAS;wBAClB,OAAO,EAAE,IAAI,CAAC,OAAO;wBACrB,OAAO,EAAE,GAAG;wBACZ,MAAM,EAAE,QAAiB;wBACzB,SAAS,EAAE,GAAG;qBACjB,CAAC,CAAC;gBACP,CAAC;YACL,CAAC;QACL,CAAC;aAAM,CAAC;YACJ,OAAO,CAAC,IAAI,CAAC;gBACT,IAAI,EAAE,qBAAqB;gBAC3B,OAAO,EAAE,SAAS;gBAClB,OAAO,EAAE,oDAAoD;gBAC7D,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,QAAiB;gBACzB,SAAS,EAAE,GAAG;aACjB,CAAC,CAAC;QACP,CAAC;QAED,OAAO,OAAO,CAAC;IACnB,CAAC;IAGD,MAAM,CAAC,cAAc,CAAC,OAAe;QACjC,MAAM,KAAK,GAAG,OAAO,CAAC,WAAW,EAAE,CAAC;QACpC,IAAI,wCAAwC,CAAC,IAAI,CAAC,KAAK,CAAC;YAAE,OAAO,YAAY,CAAC;QAC9E,IAAI,8CAA8C,CAAC,IAAI,CAAC,KAAK,CAAC;YAAE,OAAO,iBAAiB,CAAC;QACzF,IAAI,6CAA6C,CAAC,IAAI,CAAC,KAAK,CAAC;YAAE,OAAO,iBAAiB,CAAC;QACxF,IAAI,+CAA+C,CAAC,IAAI,CAAC,KAAK,CAAC;YAAE,OAAO,gBAAgB,CAAC;QACzF,IAAI,uDAAuD,CAAC,IAAI,CAAC,KAAK,CAAC;YAAE,OAAO,eAAe,CAAC;QAChG,OAAO,WAAW,CAAC;IACvB,CAAC;IAGO,MAAM,CAAC,YAAY,CAAC,OAAe,EAAE,SAAiB;QAC1D,MAAM,UAAU,GAAG,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QAC1E,IAAI,UAAU,CAAC,MAAM,IAAI,SAAS;YAAE,OAAO,UAAU,CAAC;QACtD,MAAM,MAAM,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,CAAC;QAClD,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,SAAS,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC;QAC1D,OAAO,MAAM,CAAC;IAClB,CAAC;IAGO,MAAM,CAAC,eAAe,CAAC,IAAa;QACxC,IAAI,IAAI,KAAK,cAAc;YAAE,OAAO,MAAM,CAAC;QAC3C,IAAI,IAAI,KAAK,YAAY;YAAE,OAAO,YAAY,CAAC;QAC/C,OAAO,UAAU,CAAC;IACtB,CAAC;CACJ"}

package/dist/wrap/InMemoryStorageAdapter.d.ts

@@ -0,0 +1,61 @@
+import type { StorageAdapter } from '../interfaces/StorageAdapter.js';
+import type { Genome, UserDNA, MutationLog, GeneRegistryEntry } from '../types/index.js';
+import type { SemanticFact } from '../memory/LayeredMemory.js';
+export declare class InMemoryStorageAdapter implements StorageAdapter {
+    private genomes;
+    private dna;
+    private mutations;
+    private interactions;
+    private feedbackRecords;
+    private facts;
+    private factIndex;
+    private geneRegistry;
+    initialize(): Promise<void>;
+    saveGenome(genome: Genome): Promise<void>;
+    loadGenome(genomeId: string): Promise<Genome | null>;
+    deleteGenome(genomeId: string): Promise<void>;
+    listGenomes(): Promise<Genome[]>;
+    saveDNA(userId: string, genomeId: string, dna: UserDNA): Promise<void>;
+    loadDNA(userId: string, genomeId: string): Promise<UserDNA | null>;
+    logMutation(mutation: MutationLog): Promise<void>;
+    getMutationHistory(genomeId: string, limit?: number): Promise<MutationLog[]>;
+    getGeneMutationHistory(genomeId: string, gene: string, limit?: number): Promise<MutationLog[]>;
+    recordInteraction(interaction: {
+        genomeId: string;
+        userId: string;
+        userMessage: string;
+        assistantResponse: string;
+        toolCalls: unknown[];
+        score?: number;
+        timestamp: Date;
+    }): Promise<void>;
+    getRecentInteractions(genomeId: string, userId: string, limit?: number): Promise<unknown[]>;
+    recordFeedback(feedback: {
+        genomeId: string;
+        userId: string;
+        gene: string;
+        sentiment: 'positive' | 'negative' | 'neutral';
+        timestamp: Date;
+    }): Promise<void>;
+    getAnalytics(genomeId: string): Promise<{
+        totalMutations: number;
+        totalInteractions: number;
+        avgFitnessImprovement: number;
+        userSatisfaction: number;
+        topGenes: Array<{
+            gene: string;
+            fitness: number;
+        }>;
+    }>;
+    saveFact(fact: SemanticFact, userId: string, genomeId: string): Promise<void>;
+    getFacts(userId: string, genomeId: string, includeExpired?: boolean): Promise<SemanticFact[]>;
+    getFact(factId: string): Promise<SemanticFact | null>;
+    updateFact(factId: string, updates: Partial<SemanticFact>): Promise<void>;
+    deleteFact(factId: string): Promise<void>;
+    deleteUserFacts(userId: string, genomeId: string): Promise<void>;
+    cleanExpiredFacts(userId: string, genomeId: string): Promise<number>;
+    saveToGeneRegistry(entry: GeneRegistryEntry): Promise<void>;
+    queryGeneRegistry(familyId: string, gene?: string, minFitness?: number): Promise<GeneRegistryEntry[]>;
+    getBestRegistryGene(familyId: string, gene: string): Promise<GeneRegistryEntry | null>;
+}
+//# sourceMappingURL=InMemoryStorageAdapter.d.ts.map

package/dist/wrap/InMemoryStorageAdapter.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"InMemoryStorageAdapter.d.ts","sourceRoot":"","sources":["../../src/wrap/InMemoryStorageAdapter.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AACtE,OAAO,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,WAAW,EAAE,iBAAiB,EAAE,MAAM,mBAAmB,CAAC;AACzF,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AAE/D,qBAAa,sBAAuB,YAAW,cAAc;IACzD,OAAO,CAAC,OAAO,CAA6B;IAC5C,OAAO,CAAC,GAAG,CAA8B;IACzC,OAAO,CAAC,SAAS,CAAqB;IACtC,OAAO,CAAC,YAAY,CAAsC;IAC1D,OAAO,CAAC,eAAe,CAAsC;IAC7D,OAAO,CAAC,KAAK,CAAmC;IAChD,OAAO,CAAC,SAAS,CAA+B;IAChD,OAAO,CAAC,YAAY,CAA2B;IAEzC,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAM3B,UAAU,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAIzC,UAAU,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IAKpD,YAAY,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAI7C,WAAW,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC;IAMhC,OAAO,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC;IAItE,OAAO,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,GAAG,IAAI,CAAC;IAOlE,WAAW,CAAC,QAAQ,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC;IAIjD,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,SAAM,GAAG,OAAO,CAAC,WAAW,EAAE,CAAC;IAMzE,sBAAsB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,SAAK,GAAG,OAAO,CAAC,WAAW,EAAE,CAAC;IAQ1F,iBAAiB,CAAC,WAAW,EAAE;QACjC,QAAQ,EAAE,MAAM,CAAC;QACjB,MAAM,EAAE,MAAM,CAAC;QACf,WAAW,EAAE,MAAM,CAAC;QACpB,iBAAiB,EAAE,MAAM,CAAC;QAC1B,SAAS,EAAE,OAAO,EAAE,CAAC;QACrB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,SAAS,EAAE,IAAI,CAAC;KACnB,GAAG,OAAO,CAAC,IAAI,CAAC;IAIX,qBAAqB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,SAAK,GAAG,OAAO,CAAC,OAAO,EAAE,CAAC;IAQvF,cAAc,CAAC,QAAQ,EAAE;QAC3B,QAAQ,EAAE,MAAM,CAAC;QACjB,MAAM,EAAE,MAAM,CAAC;QACf,IAAI,EAAE,MAAM,CAAC;QACb,SAAS,EAAE,UAAU,GAAG,UAAU,GAAG,SAAS,CAAC;QAC/C,SAAS,EAAE,IAAI,CAAC;KACnB,GAAG,OAAO,CAAC,IAAI,CAAC;IAMX,YAAY,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC;QAC1C,cAAc,EAAE,MAAM,CAAC;QACvB,iBAAiB,EAAE,MAAM,CAAC;QAC1B,qBAAqB,EAAE,MAAM,CAAC;QAC9B,gBAAgB,EAAE,MAAM,CAAC;QACzB,QAAQ,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,OAAO,EAAE,MAAM,CAAA;SAAE,CAAC,CAAC;KACtD,CAAC;IAiBI,QAAQ,CAAC,IAAI,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAU7E,QAAQ,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,cAAc,UAAQ,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IAe3F,OAAO,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,GAAG,IAAI,CAAC;IAKrD,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,YAAY,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC;IAOzE,UAAU,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAUzC,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAShE,iBAAiB,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAuBpE,kBAAkB,CAAC,KAAK,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC;IAI3D,iBAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,UAAU,SAAI,GAAG,OAAO,CAAC,iBAAiB,EAAE,CAAC;IAQhG,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,iBAAiB,GAAG,IAAI,CAAC;CAK/F"}

package/dist/wrap/InMemoryStorageAdapter.js

@@ -0,0 +1,153 @@
+export class InMemoryStorageAdapter {
+    genomes = new Map();
+    dna = new Map();
+    mutations = [];
+    interactions = [];
+    feedbackRecords = [];
+    facts = new Map();
+    factIndex = new Map();
+    geneRegistry = [];
+    async initialize() {
+    }
+    async saveGenome(genome) {
+        this.genomes.set(genome.id, structuredClone(genome));
+    }
+    async loadGenome(genomeId) {
+        const genome = this.genomes.get(genomeId);
+        return genome ? structuredClone(genome) : null;
+    }
+    async deleteGenome(genomeId) {
+        this.genomes.delete(genomeId);
+    }
+    async listGenomes() {
+        return Array.from(this.genomes.values()).map(g => structuredClone(g));
+    }
+    async saveDNA(userId, genomeId, dna) {
+        this.dna.set(`${userId}:${genomeId}`, structuredClone(dna));
+    }
+    async loadDNA(userId, genomeId) {
+        const dna = this.dna.get(`${userId}:${genomeId}`);
+        return dna ? structuredClone(dna) : null;
+    }
+    async logMutation(mutation) {
+        this.mutations.push(structuredClone(mutation));
+    }
+    async getMutationHistory(genomeId, limit = 100) {
+        return this.mutations
+            .filter(m => m.genomeId === genomeId)
+            .slice(-limit);
+    }
+    async getGeneMutationHistory(genomeId, gene, limit = 50) {
+        return this.mutations
+            .filter(m => m.genomeId === genomeId && m.gene === gene)
+            .slice(-limit);
+    }
+    async recordInteraction(interaction) {
+        this.interactions.push({ ...interaction });
+    }
+    async getRecentInteractions(genomeId, userId, limit = 20) {
+        return this.interactions
+            .filter(i => i.genomeId === genomeId && i.userId === userId)
+            .slice(-limit);
+    }
+    async recordFeedback(feedback) {
+        this.feedbackRecords.push({ ...feedback });
+    }
+    async getAnalytics(genomeId) {
+        const genomeMutations = this.mutations.filter(m => m.genomeId === genomeId);
+        const genomeInteractions = this.interactions.filter(i => i.genomeId === genomeId);
+        return {
+            totalMutations: genomeMutations.length,
+            totalInteractions: genomeInteractions.length,
+            avgFitnessImprovement: genomeMutations.length > 0
+                ? genomeMutations.reduce((sum, m) => sum + (m.fitnessDelta ?? 0), 0) / genomeMutations.length
+                : 0,
+            userSatisfaction: 0.7,
+            topGenes: [],
+        };
+    }
+    async saveFact(fact, userId, genomeId) {
+        this.facts.set(fact.id, structuredClone(fact));
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        if (!ids.includes(fact.id)) {
+            ids.push(fact.id);
+        }
+        this.factIndex.set(key, ids);
+    }
+    async getFacts(userId, genomeId, includeExpired = false) {
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        const facts = [];
+        for (const id of ids) {
+            const fact = this.facts.get(id);
+            if (fact) {
+                if (includeExpired || !fact.expiry || fact.expiry > new Date()) {
+                    facts.push(structuredClone(fact));
+                }
+            }
+        }
+        return facts;
+    }
+    async getFact(factId) {
+        const fact = this.facts.get(factId);
+        return fact ? structuredClone(fact) : null;
+    }
+    async updateFact(factId, updates) {
+        const existing = this.facts.get(factId);
+        if (existing) {
+            this.facts.set(factId, { ...existing, ...updates });
+        }
+    }
+    async deleteFact(factId) {
+        this.facts.delete(factId);
+        for (const [key, ids] of this.factIndex.entries()) {
+            const filtered = ids.filter(id => id !== factId);
+            if (filtered.length !== ids.length) {
+                this.factIndex.set(key, filtered);
+            }
+        }
+    }
+    async deleteUserFacts(userId, genomeId) {
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        for (const id of ids) {
+            this.facts.delete(id);
+        }
+        this.factIndex.delete(key);
+    }
+    async cleanExpiredFacts(userId, genomeId) {
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        let cleaned = 0;
+        const now = new Date();
+        const remaining = [];
+        for (const id of ids) {
+            const fact = this.facts.get(id);
+            if (fact?.expiry && fact.expiry <= now) {
+                this.facts.delete(id);
+                cleaned++;
+            }
+            else {
+                remaining.push(id);
+            }
+        }
+        this.factIndex.set(key, remaining);
+        return cleaned;
+    }
+    async saveToGeneRegistry(entry) {
+        this.geneRegistry.push(structuredClone(entry));
+    }
+    async queryGeneRegistry(familyId, gene, minFitness = 0) {
+        return this.geneRegistry.filter(e => e.familyId === familyId &&
+            (!gene || e.gene === gene) &&
+            e.fitness >= minFitness);
+    }
+    async getBestRegistryGene(familyId, gene) {
+        const entries = await this.queryGeneRegistry(familyId, gene);
+        if (entries.length === 0)
+            return null;
+        return entries.sort((a, b) => b.fitness - a.fitness)[0];
+    }
+}
+//# sourceMappingURL=InMemoryStorageAdapter.js.map

package/dist/wrap/InMemoryStorageAdapter.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"InMemoryStorageAdapter.js","sourceRoot":"","sources":["../../src/wrap/InMemoryStorageAdapter.ts"],"names":[],"mappings":"AAaA,MAAM,OAAO,sBAAsB;IACvB,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IACpC,GAAG,GAAG,IAAI,GAAG,EAAmB,CAAC;IACjC,SAAS,GAAkB,EAAE,CAAC;IAC9B,YAAY,GAAmC,EAAE,CAAC;IAClD,eAAe,GAAmC,EAAE,CAAC;IACrD,KAAK,GAAG,IAAI,GAAG,EAAwB,CAAC;IACxC,SAAS,GAAG,IAAI,GAAG,EAAoB,CAAC;IACxC,YAAY,GAAwB,EAAE,CAAC;IAE/C,KAAK,CAAC,UAAU;IAEhB,CAAC;IAID,KAAK,CAAC,UAAU,CAAC,MAAc;QAC3B,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,EAAE,eAAe,CAAC,MAAM,CAAC,CAAC,CAAC;IACzD,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,QAAgB;QAC7B,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;QAC1C,OAAO,MAAM,CAAC,CAAC,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACnD,CAAC;IAED,KAAK,CAAC,YAAY,CAAC,QAAgB;QAC/B,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;IAClC,CAAC;IAED,KAAK,CAAC,WAAW;QACb,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1E,CAAC;IAID,KAAK,CAAC,OAAO,CAAC,MAAc,EAAE,QAAgB,EAAE,GAAY;QACxD,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,MAAM,IAAI,QAAQ,EAAE,EAAE,eAAe,CAAC,GAAG,CAAC,CAAC,CAAC;IAChE,CAAC;IAED,KAAK,CAAC,OAAO,CAAC,MAAc,EAAE,QAAgB;QAC1C,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,MAAM,IAAI,QAAQ,EAAE,CAAC,CAAC;QAClD,OAAO,GAAG,CAAC,CAAC,CAAC,eAAe,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAC7C,CAAC;IAID,KAAK,CAAC,WAAW,CAAC,QAAqB;QACnC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAC,CAAC;IACnD,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAAgB,EAAE,KAAK,GAAG,GAAG;QAClD,OAAO,IAAI,CAAC,SAAS;aAChB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,QAAQ,CAAC;aACpC,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC;IACvB,CAAC;IAED,KAAK,CAAC,sBAAsB,CAAC,QAAgB,EAAE,IAAY,EAAE,KAAK,GAAG,EAAE;QACnE,OAAO,IAAI,CAAC,SAAS;aAChB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,QAAQ,IAAI,CAAC,CAAC,IAAI,KAAK,IAAI,CAAC;aACvD,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC;IACvB,CAAC;IAID,KAAK,CAAC,iBAAiB,CAAC,WAQvB;QACG,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,EAAE,GAAG,WAAW,EAAE,CAAC,CAAC;IAC/C,CAAC;IAED,KAAK,CAAC,qBAAqB,CAAC,QAAgB,EAAE,MAAc,EAAE,KAAK,GAAG,EAAE;QACpE,OAAO,IAAI,CAAC,YAAY;aACnB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,QAAQ,IAAI,CAAC,CAAC,MAAM,KAAK,MAAM,CAAC;aAC3D,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC;IACvB,CAAC;IAID,KAAK,CAAC,cAAc,CAAC,QAMpB;QACG,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,EAAE,GAAG,QAAQ,EAAE,CAAC,CAAC;IAC/C,CAAC;IAID,KAAK,CAAC,YAAY,CAAC,QAAgB;QAO/B,MAAM,eAAe,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,QAAQ,CAAC,CAAC;QAC5E,MAAM,kBAAkB,GAAG,IAAI,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,QAAQ,CAAC,CAAC;QAElF,OAAO;YACH,cAAc,EAAE,eAAe,CAAC,MAAM;YACtC,iBAAiB,EAAE,kBAAkB,CAAC,MAAM;YAC5C,qBAAqB,EAAE,eAAe,CAAC,MAAM,GAAG,CAAC;gBAC7C,CAAC,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,eAAe,CAAC,MAAM;gBAC7F,CAAC,CAAC,CAAC;YACP,gBAAgB,EAAE,GAAG;YACrB,QAAQ,EAAE,EAAE;SACf,CAAC;IACN,CAAC;IAID,KAAK,CAAC,QAAQ,CAAC,IAAkB,EAAE,MAAc,EAAE,QAAgB;QAC/D,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,eAAe,CAAC,IAAI,CAAC,CAAC,CAAC;QAC/C,MAAM,GAAG,GAAG,GAAG,MAAM,IAAI,QAAQ,EAAE,CAAC;QACpC,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC;QAC1C,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,CAAC;YACzB,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACtB,CAAC;QACD,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC;IACjC,CAAC;IAED,KAAK,CAAC,QAAQ,CAAC,MAAc,EAAE,QAAgB,EAAE,cAAc,GAAG,KAAK;QACnE,MAAM,GAAG,GAAG,GAAG,MAAM,IAAI,QAAQ,EAAE,CAAC;QACpC,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC;QAC1C,MAAM,KAAK,GAAmB,EAAE,CAAC;QACjC,KAAK,MAAM,EAAE,IAAI,GAAG,EAAE,CAAC;YACnB,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;YAChC,IAAI,IAAI,EAAE,CAAC;gBACP,IAAI,cAAc,IAAI,CAAC,IAAI,CAAC,MAAM,IAAI,IAAI,CAAC,MAAM,GAAG,IAAI,IAAI,EAAE,EAAE,CAAC;oBAC7D,KAAK,CAAC,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAC,CAAC;gBACtC,CAAC;YACL,CAAC;QACL,CAAC;QACD,OAAO,KAAK,CAAC;IACjB,CAAC;IAED,KAAK,CAAC,OAAO,CAAC,MAAc;QACxB,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;QACpC,OAAO,IAAI,CAAC,CAAC,CAAC,eAAe,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAC/C,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,MAAc,EAAE,OAA8B;QAC3D,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;QACxC,IAAI,QAAQ,EAAE,CAAC;YACX,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,EAAE,EAAE,GAAG,QAAQ,EAAE,GAAG,OAAO,EAAE,CAAC,CAAC;QACxD,CAAC;IACL,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,MAAc;QAC3B,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;QAC1B,KAAK,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,EAAE,CAAC;YAChD,MAAM,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,MAAM,CAAC,CAAC;YACjD,IAAI,QAAQ,CAAC,MAAM,KAAK,GAAG,CAAC,MAAM,EAAE,CAAC;gBACjC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;YACtC,CAAC;QACL,CAAC;IACL,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,MAAc,EAAE,QAAgB;QAClD,MAAM,GAAG,GAAG,GAAG,MAAM,IAAI,QAAQ,EAAE,CAAC;QACpC,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC;QAC1C,KAAK,MAAM,EAAE,IAAI,GAAG,EAAE,CAAC;YACnB,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QAC1B,CAAC;QACD,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;IAC/B,CAAC;IAED,KAAK,CAAC,iBAAiB,CAAC,MAAc,EAAE,QAAgB;QACpD,MAAM,GAAG,GAAG,GAAG,MAAM,IAAI,QAAQ,EAAE,CAAC;QACpC,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC;QAC1C,IAAI,OAAO,GAAG,CAAC,CAAC;QAChB,MAAM,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,MAAM,SAAS,GAAa,EAAE,CAAC;QAE/B,KAAK,MAAM,EAAE,IAAI,GAAG,EAAE,CAAC;YACnB,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;YAChC,IAAI,IAAI,EAAE,MAAM,IAAI,IAAI,CAAC,MAAM,IAAI,GAAG,EAAE,CAAC;gBACrC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;gBACtB,OAAO,EAAE,CAAC;YACd,CAAC;iBAAM,CAAC;gBACJ,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACvB,CAAC;QACL,CAAC;QAED,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;QACnC,OAAO,OAAO,CAAC;IACnB,CAAC;IAID,KAAK,CAAC,kBAAkB,CAAC,KAAwB;QAC7C,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC;IACnD,CAAC;IAED,KAAK,CAAC,iBAAiB,CAAC,QAAgB,EAAE,IAAa,EAAE,UAAU,GAAG,CAAC;QACnE,OAAO,IAAI,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAChC,CAAC,CAAC,QAAQ,KAAK,QAAQ;YACvB,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,IAAI,KAAK,IAAI,CAAC;YAC1B,CAAC,CAAC,OAAO,IAAI,UAAU,CAC1B,CAAC;IACN,CAAC;IAED,KAAK,CAAC,mBAAmB,CAAC,QAAgB,EAAE,IAAY;QACpD,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,iBAAiB,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC;QAC7D,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,IAAI,CAAC;QACtC,OAAO,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;IAC5D,CAAC;CACJ"}

package/dist/wrap/WrapOptions.d.ts

@@ -0,0 +1,45 @@
+import type { StorageAdapter } from '../interfaces/StorageAdapter.js';
+import type { GeneBank } from '../gene-bank/GeneBank.js';
+import type { GeneCategory } from '../types/GenomeV2.js';
+import type { MetricsCollectorConfig } from '../monitoring/MetricsCollector.js';
+import type { DashboardConfig } from '../monitoring/MonitoringDashboard.js';
+export interface WrapOptions {
+    name?: string;
+    systemPrompt: string;
+    protect?: string[];
+    evolve?: Array<string | {
+        category: GeneCategory;
+        content: string;
+    }>;
+    adapt?: Array<string | {
+        trait: string;
+        content: string;
+    }>;
+    storage?: StorageAdapter;
+    geneBank?: GeneBank;
+    evolution?: {
+        mode?: 'conservative' | 'balanced' | 'aggressive';
+        canary?: boolean;
+        evolveEveryN?: number;
+        autoMutateOnDrift?: boolean;
+        autoCompressOnPressure?: boolean;
+        enableSwarm?: boolean;
+    };
+    monitoring?: {
+        enabled?: boolean;
+        dashboard?: boolean;
+        dashboardConfig?: DashboardConfig;
+        alerts?: boolean;
+        metricsConfig?: MetricsCollectorConfig;
+    };
+    familyId?: string;
+    enableSelfModel?: boolean;
+    enableMetacognition?: boolean;
+    enableEmotionalModel?: boolean;
+    agentPurpose?: string;
+}
+export type WrappableFunction = (input: string) => Promise<string>;
+export interface FunctionWrapOptions extends WrapOptions {
+    name: string;
+}
+//# sourceMappingURL=WrapOptions.d.ts.map

package/dist/wrap/WrapOptions.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"WrapOptions.d.ts","sourceRoot":"","sources":["../../src/wrap/WrapOptions.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AACtE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,0BAA0B,CAAC;AACzD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC;AACzD,OAAO,KAAK,EAAE,sBAAsB,EAAE,MAAM,mCAAmC,CAAC;AAChF,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,sCAAsC,CAAC;AAI5E,MAAM,WAAW,WAAW;IAExB,IAAI,CAAC,EAAE,MAAM,CAAC;IAMd,YAAY,EAAE,MAAM,CAAC;IAOrB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IAMnB,MAAM,CAAC,EAAE,KAAK,CAAC,MAAM,GAAG;QAAE,QAAQ,EAAE,YAAY,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAMrE,KAAK,CAAC,EAAE,KAAK,CAAC,MAAM,GAAG;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAK3D,OAAO,CAAC,EAAE,cAAc,CAAC;IAKzB,QAAQ,CAAC,EAAE,QAAQ,CAAC;IAIpB,SAAS,CAAC,EAAE;QAER,IAAI,CAAC,EAAE,cAAc,GAAG,UAAU,GAAG,YAAY,CAAC;QAElD,MAAM,CAAC,EAAE,OAAO,CAAC;QAEjB,YAAY,CAAC,EAAE,MAAM,CAAC;QAEtB,iBAAiB,CAAC,EAAE,OAAO,CAAC;QAE5B,sBAAsB,CAAC,EAAE,OAAO,CAAC;QAEjC,WAAW,CAAC,EAAE,OAAO,CAAC;KACzB,CAAC;IAIF,UAAU,CAAC,EAAE;QAET,OAAO,CAAC,EAAE,OAAO,CAAC;QAElB,SAAS,CAAC,EAAE,OAAO,CAAC;QAEpB,eAAe,CAAC,EAAE,eAAe,CAAC;QAElC,MAAM,CAAC,EAAE,OAAO,CAAC;QAEjB,aAAa,CAAC,EAAE,sBAAsB,CAAC;KAC1C,CAAC;IAKF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAElB,eAAe,CAAC,EAAE,OAAO,CAAC;IAE1B,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAE9B,oBAAoB,CAAC,EAAE,OAAO,CAAC;IAE/B,YAAY,CAAC,EAAE,MAAM,CAAC;CACzB;AAID,MAAM,MAAM,iBAAiB,GAAG,CAAC,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC,MAAM,CAAC,CAAC;AAEnE,MAAM,WAAW,mBAAoB,SAAQ,WAAW;IAEpD,IAAI,EAAE,MAAM,CAAC;CAChB"}

package/dist/wrap/WrapOptions.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=WrapOptions.js.map

package/dist/wrap/WrapOptions.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"WrapOptions.js","sourceRoot":"","sources":["../../src/wrap/WrapOptions.ts"],"names":[],"mappings":""}