@pennyfarthing/core 10.1.0 → 10.2.0

package/README.md

@@ -1,6 +1,6 @@
 # Pennyfarthing
 
-**v10.1.0** | *The outer loop goes once, the inner loop goes many times.*
+**v10.2.0** | *The outer loop goes once, the inner loop goes many times.*
 
 <img src="pennyfarthing.png" alt="Pennyfarthing Logo" width="75" style="float:left; margin:10px">
 
@@ -15,9 +15,9 @@ A Claude Code agent orchestration framework built around three pillars: a flexib
 A multi-agent system with customizable BikeLane workflows for structured software development:
 
 - **10 Coordinated Agents** - SM, TEA, Dev, Reviewer, Architect, PM, Tech Writer, UX Designer, DevOps, Orchestrator
-- **9 BikeLane Workflows** - Phased (TDD, BDD, Trivial, 2pTDD), Stepped (Architecture, Release, Git Cleanup)
-- **50 Slash Commands** - Entry points for agent activation and workflows
-- **22 Skills** - Reusable knowledge domains (testing, code-review, jira, mermaid, etc.)
+- **11 BikeLane Workflows** - Phased (TDD, BDD, Trivial, 2pTDD, TDD-Tandem, BDD-Tandem, Patch, Agent-Docs), Stepped (Architecture, Release, Git Cleanup)
+- **46 Slash Commands** - Entry points for agent activation and workflows
+- **19 Skills** - Reusable knowledge domains (testing, code-review, jira, mermaid, etc.)
 - **Prime Context System** - Tiered context injection assembles agent definition, persona, session state, and sidecar memory
 - **Automatic Handoffs** - Context-aware agent transitions via subagent delegation
 - **Agent Sidecars** - Persistent learning files where agents record patterns, gotchas, and decisions across stories
@@ -41,12 +41,6 @@ The 97 persona themes (Discworld, Star Trek, Breaking Bad, etc.) are instruments
 
 ---
 
-### [**Explore the Research Showcase**](https://animated-meme-3e4494y.pages.github.io/)
-
-97 themes with OCEAN spider charts, benchmark tiers, and character profiles.
-
----
-
 ## Quick Start
 
 ```bash
@@ -87,8 +81,8 @@ All panels are draggable, floatable, and splittable:
 |-------|---------|
 | **Message** | Conversation stream (always visible) |
 | **Sprint** | Current sprint stories and progress |
-| **Progress** | TDD/BDD phase visualization |
 | **BikeLane** | Stepped workflow state and navigation |
+| **AC** | Acceptance criteria checklist with progress |
 | **Acceptance Criteria** | Story ACs with pass/fail tracking |
 | **Changed** | Files added or modified during the session |
 | **Diffs** | Git-based diff viewer for current changes |
@@ -100,6 +94,7 @@ All panels are draggable, floatable, and splittable:
 | **Background** | Background job monitoring |
 | **TTY** | Integrated terminal |
 | **Workflow** | Workflow navigation and status |
+| **Hotspots** | Codebase health — dead code, complexity, dependencies |
 
 ### Tool Visualization
 
@@ -201,21 +196,21 @@ See [Benchmarking Documentation](docs/BENCHMARKING.md) for methodology.
 |----------|-------------|
 | [**User Guide**](docs/USER-GUIDE.md) | Complete documentation |
 | [Getting Started](docs/GETTING-STARTED.md) | Quick start guide |
-| [Workflow Diagrams](docs/WORKFLOW-DIAGRAMS.md) | Visual Mermaid diagrams for all workflows |
+| [BikeLane Diagrams](docs/BIKELANE-DIAGRAMS.md) | Visual Mermaid diagrams for all workflows |
 | [BikeLane](docs/BIKELANE.md) | Workflow system architecture |
 | [Agents](docs/AGENTS.md) | Agent reference |
 | [Commands](docs/COMMANDS.md) | Slash command reference |
-| [Benchmarking](docs/BENCHMARKING.md) | Scientific persona evaluation |
+| [Benchmarking](packages/benchmark/docs/BENCHMARKING.md) | Scientific persona evaluation |
 | [Jira Integration](docs/JIRA-INTEGRATION.md) | Jira CLI and sprint sync |
-| [Cyclist](docs/CYCLIST.md) | Visual terminal documentation |
+| [Cyclist Guide](docs/CYCLIST-GUIDE.md) | Visual terminal documentation |
 
-## Available Themes (97)
+## Available Themes (98)
 
-Core includes 26 themes. Optional theme packs add 98 more across 7 packages:
+Core includes 27 themes. Optional theme packs add 71 more across 7 packages:
 
 | Package | Themes | Examples |
 |---------|--------|----------|
-| `@pennyfarthing/core` (included) | 26 | `the-expanse`, `star-trek-tng`, `breaking-bad`, `discworld`, `game-of-thrones` |
+| `@pennyfarthing/core` (included) | 27 | `the-expanse`, `star-trek-tng`, `breaking-bad`, `discworld`, `fifth-element` |
 | `@pennyfarthing/themes-prestige-tv` | 17 | `succession`, `the-wire`, `mad-men`, `fargo`, `the-sopranos` |
 | `@pennyfarthing/themes-literary` | 15 | `shakespeare`, `jane-austen`, `sherlock-holmes`, `1984`, `great-gatsby` |
 | `@pennyfarthing/themes-realistic` | 14 | `ancient-philosophers`, `jazz-legends`, `film-auteurs`, `software-pioneers` |
@@ -224,7 +219,7 @@ Core includes 26 themes. Optional theme packs add 98 more across 7 packages:
 | `@pennyfarthing/themes-mythology-fantasy` | 4 | `greek-mythology`, `norse-mythology`, `his-dark-materials`, `the-witcher` |
 | `@pennyfarthing/themes-superheroes` | 4 | `marvel-mcu`, `avatar-the-last-airbender`, `legion-of-doom` |
 
-All themes include OCEAN (Big Five) personality profiles. See [Theme Comparison](docs/THEME-COMPARISON.md) for personality analysis.
+All themes include OCEAN (Big Five) personality profiles. See [Personas](docs/PERSONAS.md) for personality analysis.
 
 ### Installing Theme Packs
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@pennyfarthing/core",
-  "version": "10.1.0",
+  "version": "10.2.0",
   "description": "Claude Code agent framework with TDD workflow and persona system",
   "type": "module",
   "bin": {
@@ -38,6 +38,7 @@
     "dev": "pnpm -r --parallel dev",
     "test": "pnpm -r test",
     "lint": "eslint 'packages/*/src/**/*.ts' --max-warnings 0",
+    "lint:md": "markdownlint-cli2 'pennyfarthing-dist/**/*.md'",
     "validate:refs": "node scripts/validate-refs.js",
     "test:validate-refs": "node --test scripts/validate-refs.test.js",
     "clean": "pnpm -r clean"
@@ -55,6 +56,7 @@
     "@eslint/js": "^9.39.2",
     "eslint": "^9.39.2",
     "globals": "^17.0.0",
+    "markdownlint-cli2": "^0.20.0",
     "typescript": "^5.3.3",
     "typescript-eslint": "^8.53.0"
   },

package/packages/core/dist/cli/commands/doctor-file-layout.test.js.map

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package/packages/core/dist/cli/commands/doctor-legacy.test.js

@@ -112,6 +112,30 @@ describe('MSSCI-12346: Legacy Install Cleanup', () => {
             assert.strictEqual(existsSync(legacyPath), false, 'Legacy config should be removed');
         });
     });
+    describe('Bug 5: persona config preservation on YAML parse failure', () => {
+        it('should NOT delete legacy persona-config.yaml if YAML parse fails', () => {
+            const legacyConfig = join(claudeDir, 'persona-config.yaml');
+            writeFileSync(legacyConfig, 'theme: minimalist\n  bad indent: [unclosed', 'utf8');
+            const results = checkLegacyFiles(testDir);
+            const personaResult = results.find(r => r.name.includes('persona'));
+            assert.ok(personaResult, 'Should detect legacy persona config');
+            if (personaResult?.fix) {
+                personaResult.fix();
+            }
+            assert.ok(existsSync(legacyConfig), 'Legacy persona config must NOT be deleted when YAML parse fails');
+        });
+        it('should delete legacy persona-config.yaml after successful migration', () => {
+            const legacyConfig = join(claudeDir, 'persona-config.yaml');
+            writeFileSync(legacyConfig, 'theme: minimalist\n', 'utf8');
+            mkdirSync(pennyfarthingDir, { recursive: true });
+            const results = checkLegacyFiles(testDir);
+            const personaResult = results.find(r => r.name.includes('persona'));
+            if (personaResult?.fix) {
+                personaResult.fix();
+            }
+            assert.ok(!existsSync(legacyConfig), 'Legacy persona config should be deleted after successful migration');
+        });
+    });
     describe('checkLegacyStatuslinePath()', () => {
         it('should detect wrong statusline path in settings.local.json', () => {
             // AC: doctor --fix updates settings.local.json statusline path if wrong

package/packages/core/dist/cli/commands/doctor-legacy.test.js.map

@@ -1 +1 @@
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package/packages/core/dist/cli/commands/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAsBA,UAAU,aAAa;IACrB,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;IACjC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,GAAG,CAAC,EAAE,MAAM,IAAI,CAAC;CAClB;AAED,wBAAsB,aAAa,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC,CA2HzE;AA+iDD;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,WAAW,EAAE,MAAM,GAAG,WAAW,EAAE,CAgKnE;AAED;;;;;;GAMG;AACH,wBAAgB,yBAAyB,CAAC,WAAW,EAAE,MAAM,GAAG,WAAW,CAkF1E;AAED;;;;;;GAMG;AACH,wBAAgB,eAAe,CAAC,WAAW,EAAE,MAAM,GAAG,WAAW,EAAE,CAsIlE"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAsBA,UAAU,aAAa;IACrB,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;IACjC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,GAAG,CAAC,EAAE,MAAM,IAAI,CAAC;CAClB;AAED,wBAAsB,aAAa,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC,CA2HzE;AAsoDD;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,WAAW,EAAE,MAAM,GAAG,WAAW,EAAE,CA+JnE;AAED;;;;;;GAMG;AACH,wBAAgB,yBAAyB,CAAC,WAAW,EAAE,MAAM,GAAG,WAAW,CAkF1E;AAED;;;;;;GAMG;AACH,wBAAgB,eAAe,CAAC,WAAW,EAAE,MAAM,GAAG,WAAW,EAAE,CAsIlE"}

package/packages/core/dist/cli/commands/doctor.js

@@ -403,7 +403,8 @@ function addBenchmarkPermissions(projectRoot) {
             settings = JSON.parse(readFileSync(settingsPath, 'utf8'));
         }
         catch {
-            // Start fresh if parse fails
+            logger.warning(`Cannot parse ${settingsPath} — fix JSON syntax and re-run doctor --fix`);
+            return;
         }
     }
     if (!settings.permissions) {
@@ -722,7 +723,8 @@ function addContextCircuitBreaker(projectRoot, installationType) {
             settings = JSON.parse(readFileSync(settingsPath, 'utf8'));
         }
         catch {
-            // Start fresh if parse fails
+            logger.warning(`Cannot parse ${settingsPath} — fix JSON syntax and re-run doctor --fix`);
+            return;
         }
     }
     if (!settings.hooks) {
@@ -810,7 +812,8 @@ function addSchemaValidationHook(projectRoot, installationType) {
             settings = JSON.parse(readFileSync(settingsPath, 'utf8'));
         }
         catch {
-            // Start fresh if parse fails
+            logger.warning(`Cannot parse ${settingsPath} — fix JSON syntax and re-run doctor --fix`);
+            return;
         }
     }
     if (!settings.hooks) {
@@ -899,7 +902,8 @@ function addPostToolUseHook(projectRoot, installationType) {
             settings = JSON.parse(readFileSync(settingsPath, 'utf8'));
         }
         catch {
-            // Start fresh if parse fails
+            logger.warning(`Cannot parse ${settingsPath} — fix JSON syntax and re-run doctor --fix`);
+            return;
         }
     }
     if (!settings.hooks) {
@@ -988,7 +992,8 @@ function addSprintYamlValidationHook(projectRoot, installationType) {
             settings = JSON.parse(readFileSync(settingsPath, 'utf8'));
         }
         catch {
-            // Start fresh if parse fails
+            logger.warning(`Cannot parse ${settingsPath} — fix JSON syntax and re-run doctor --fix`);
+            return;
         }
     }
     if (!settings.hooks) {
@@ -1025,7 +1030,8 @@ function addStopHook(projectRoot, installationType) {
             settings = JSON.parse(readFileSync(settingsPath, 'utf8'));
         }
         catch {
-            // Start fresh if parse fails
+            logger.warning(`Cannot parse ${settingsPath} — fix JSON syntax and re-run doctor --fix`);
+            return;
         }
     }
     if (!settings.hooks) {
@@ -1090,7 +1096,8 @@ function addSessionStartHooks(projectRoot, installationType) {
             settings = JSON.parse(readFileSync(settingsPath, 'utf8'));
         }
         catch {
-            // Start fresh if parse fails
+            logger.warning(`Cannot parse ${settingsPath} — fix JSON syntax and re-run doctor --fix`);
+            return;
         }
     }
     if (!settings.hooks) {
@@ -1316,15 +1323,28 @@ function checkHooks(projectRoot) {
 /**
  * Check git hooks in .git/hooks/ are up-to-date with package source.
  * Detects stale copies that were installed by `pennyfarthing init` but never refreshed.
- * Provides --fix to overwrite stale hooks with current package content.
+ * For framework/orchestrator repos (has pennyfarthing-dist/), checks that hooks are
+ * symlinked rather than copied, since symlinks stay current automatically.
+ * Provides --fix to refresh stale hooks or replace copies with symlinks.
  */
 function checkGitHooks(projectRoot, nodeModulesPath) {
     const results = [];
-    const gitHooksDir = join(projectRoot, '.git/hooks');
+    // Use git rev-parse to find the actual git dir (handles worktrees where .git is a file)
+    const gitDirResult = spawnSync('git', ['rev-parse', '--git-dir'], { cwd: projectRoot, encoding: 'utf8' });
+    const gitDir = gitDirResult.status === 0
+        ? (gitDirResult.stdout.trim().startsWith('/') ? gitDirResult.stdout.trim() : join(projectRoot, gitDirResult.stdout.trim()))
+        : join(projectRoot, '.git');
+    const gitHooksDir = join(gitDir, 'hooks');
     if (!pathExists(gitHooksDir)) {
         return results;
     }
-    if (!nodeModulesPath) {
+    // Detect framework/orchestrator repo (has pennyfarthing-dist/ at project root)
+    const isFrameworkRepo = pathExists(join(projectRoot, 'pennyfarthing-dist'));
+    const frameworkHooksDir = isFrameworkRepo
+        ? join(projectRoot, 'pennyfarthing-dist/scripts/hooks')
+        : null;
+    // Need either node_modules or framework source to compare against
+    if (!nodeModulesPath && !frameworkHooksDir) {
         return results;
     }
     const hooks = [
@@ -1333,7 +1353,10 @@ function checkGitHooks(projectRoot, nodeModulesPath) {
         { source: 'post-merge.sh', dest: 'post-merge', marker: 'pennyfarthing' },
     ];
     for (const hook of hooks) {
-        const sourcePath = join(nodeModulesPath, 'scripts/hooks', hook.source);
+        // Prefer framework source (pennyfarthing-dist/) over node_modules
+        const sourcePath = frameworkHooksDir
+            ? join(frameworkHooksDir, hook.source)
+            : join(nodeModulesPath, 'scripts/hooks', hook.source);
         const destPath = join(gitHooksDir, hook.dest);
         if (!pathExists(sourcePath)) {
             continue;
@@ -1344,12 +1367,75 @@ function checkGitHooks(projectRoot, nodeModulesPath) {
                 status: 'warn',
                 detail: 'Not installed',
                 fix: () => {
-                    const content = readFileSync(sourcePath, 'utf8');
-                    writeFileSync(destPath, content, { mode: 0o755 });
+                    if (isFrameworkRepo) {
+                        // Framework repos: create symlink (relative from hooks dir to source)
+                        const absSource = join(projectRoot, 'pennyfarthing-dist/scripts/hooks', hook.source);
+                        const relTarget = relative(gitHooksDir, absSource);
+                        symlinkSync(relTarget, destPath);
+                    }
+                    else {
+                        // End-user repos: copy content
+                        const content = readFileSync(sourcePath, 'utf8');
+                        writeFileSync(destPath, content, { mode: 0o755 });
+                    }
                 }
             });
             continue;
         }
+        // Check if hook is a symlink (framework repos should use symlinks)
+        const hookIsSymlink = isSymlink(destPath);
+        if (isFrameworkRepo && !hookIsSymlink) {
+            // Framework repo has a copied hook instead of a symlink — it will go stale
+            results.push({
+                name: `git-hook/${hook.dest}`,
+                status: 'warn',
+                detail: 'Copy instead of symlink (will go stale)',
+                fix: () => {
+                    // Backup existing, replace with symlink
+                    const absSource = join(projectRoot, 'pennyfarthing-dist/scripts/hooks', hook.source);
+                    const relTarget = relative(gitHooksDir, absSource);
+                    renameSync(destPath, `${destPath}.backup`);
+                    symlinkSync(relTarget, destPath);
+                }
+            });
+            continue;
+        }
+        if (hookIsSymlink) {
+            // Symlinked hook — verify target exists
+            try {
+                const target = readlinkSync(destPath);
+                const resolvedTarget = join(gitHooksDir, target);
+                if (pathExists(resolvedTarget)) {
+                    results.push({
+                        name: `git-hook/${hook.dest}`,
+                        status: 'pass',
+                        detail: 'Symlinked'
+                    });
+                }
+                else {
+                    results.push({
+                        name: `git-hook/${hook.dest}`,
+                        status: 'warn',
+                        detail: `Broken symlink → ${target}`,
+                        fix: () => {
+                            unlinkSync(destPath);
+                            const absSource = join(projectRoot, 'pennyfarthing-dist/scripts/hooks', hook.source);
+                            const relTarget = relative(gitHooksDir, absSource);
+                            symlinkSync(relTarget, destPath);
+                        }
+                    });
+                }
+            }
+            catch {
+                results.push({
+                    name: `git-hook/${hook.dest}`,
+                    status: 'warn',
+                    detail: 'Cannot read symlink'
+                });
+            }
+            continue;
+        }
+        // Copied hook — check content freshness
         const existingContent = readFileSync(destPath, 'utf8');
         // Only check hooks that are ours (contain the marker)
         if (!existingContent.includes(hook.marker)) {
@@ -1584,11 +1670,11 @@ export function checkLegacyFiles(projectRoot) {
                             writeFileSync(properThemeConfig, YAML.stringify(config), 'utf8');
                         }
                     }
+                    unlinkSync(legacyPersonaConfig);
                 }
                 catch {
-                    // If we can't read/parse legacy, just remove it
+                    logger.warning(`Cannot parse ${legacyPersonaConfig} — fix YAML syntax and re-run doctor --fix`);
                 }
-                unlinkSync(legacyPersonaConfig);
             }
         });
     }