@pella-labs/pinakes 0.1.10 → 0.3.0

package/dist/cli/import.js

@@ -1,8 +1,7 @@
 import { existsSync, readFileSync } from 'node:fs';
-import { homedir } from 'node:os';
-import { dirname, isAbsolute, resolve } from 'node:path';
 import { closeDb, openDb } from '../db/client.js';
 import { logger } from '../observability/logger.js';
+import { resolveCliDbPath } from '../paths.js';
 export function importCommand(options) {
     if (!existsSync(options.inFile)) {
         throw new Error(`input file does not exist: ${options.inFile}`);
@@ -12,7 +11,7 @@ export function importCommand(options) {
     if (data.scope && data.scope !== options.scope) {
         logger.warn({ fileScope: data.scope, requestedScope: options.scope }, 'import file scope does not match requested scope');
     }
-    const dbPath = resolveDbPath(options, options.scope);
+    const dbPath = resolveCliDbPath(options, options.scope);
     const bundle = openDb(dbPath);
     try {
         const result = { scope: options.scope, nodes: 0, edges: 0, chunks: 0 };
@@ -20,7 +19,7 @@ export function importCommand(options) {
         try {
             // Import nodes
             if (data.nodes?.length) {
-                const insertNode = bundle.writer.prepare(`INSERT OR REPLACE INTO kg_nodes
+                const insertNode = bundle.writer.prepare(`INSERT OR REPLACE INTO pinakes_nodes
            (id, scope, source_uri, section_path, kind, title, content, source_sha, token_count, confidence, created_at, updated_at, last_accessed_at)
            VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`);
                 for (const n of data.nodes) {
@@ -30,7 +29,7 @@ export function importCommand(options) {
             }
             // Import edges
             if (data.edges?.length) {
-                const insertEdge = bundle.writer.prepare(`INSERT OR REPLACE INTO kg_edges (src_id, dst_id, edge_kind)
+                const insertEdge = bundle.writer.prepare(`INSERT OR REPLACE INTO pinakes_edges (src_id, dst_id, edge_kind)
            VALUES (?, ?, ?)`);
                 for (const e of data.edges) {
                     try {
@@ -45,7 +44,7 @@ export function importCommand(options) {
             }
             // Import chunks
             if (data.chunks?.length) {
-                const insertChunk = bundle.writer.prepare(`INSERT OR REPLACE INTO kg_chunks
+                const insertChunk = bundle.writer.prepare(`INSERT OR REPLACE INTO pinakes_chunks
            (id, node_id, chunk_index, text, chunk_sha, token_count, created_at)
            VALUES (?, ?, ?, ?, ?, ?, ?)`);
                 for (const c of data.chunks) {
@@ -73,24 +72,4 @@ export function importCommand(options) {
 export function renderImport(result) {
     return `${result.scope}: imported ${result.nodes} nodes, ${result.edges} edges, ${result.chunks} chunks`;
 }
-// ----------------------------------------------------------------------------
-// Path helpers
-// ----------------------------------------------------------------------------
-function resolveDbPath(options, scope) {
-    if (scope === 'personal') {
-        if (options.profileDbPath)
-            return resolveAbs(options.profileDbPath);
-        const env = process.env.KG_PROFILE_PATH;
-        const profileDir = env ? resolveAbs(env) : resolve(homedir(), '.pharos/profile');
-        return resolve(profileDir, 'kg.db');
-    }
-    if (options.dbPath)
-        return resolveAbs(options.dbPath);
-    if (options.wikiPath)
-        return resolve(dirname(resolveAbs(options.wikiPath)), '.pinakes', 'pinakes.db');
-    return resolve(process.cwd(), '.pinakes', 'pinakes.db');
-}
-function resolveAbs(p) {
-    return isAbsolute(p) ? p : resolve(process.cwd(), p);
-}
 //# sourceMappingURL=import.js.map

package/dist/cli/import.js.map

@@ -1 +1 @@
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package/dist/cli/index.js

@@ -1,5 +1,6 @@
 #!/usr/bin/env node
 import { auditCommand, renderAudit } from './audit.js';
+import { contradictionScanCommand } from './contradiction-cli.js';
 import { exportCommand, renderExport } from './export.js';
 import { importCommand, renderImport } from './import.js';
 import { purgeCommand, renderPurge } from './purge.js';
@@ -51,7 +52,8 @@ async function main() {
     switch (subcommand) {
         case 'serve': {
             await serveCommand({
-                wikiPath: getRequiredString(flags, 'wiki-path'),
+                projectRoot: getString(flags, 'project-root'),
+                wikiPath: getString(flags, 'wiki-path'),
                 dbPath: getString(flags, 'db-path'),
                 profilePath: getString(flags, 'profile-path'),
                 profileDbPath: getString(flags, 'profile-db-path'),
@@ -61,7 +63,8 @@ async function main() {
         case 'rebuild': {
             const scope = getString(flags, 'scope');
             const summaries = await rebuildCommand({
-                wikiPath: getRequiredString(flags, 'wiki-path'),
+                projectRoot: getString(flags, 'project-root'),
+                wikiPath: getString(flags, 'wiki-path'),
                 dbPath: getString(flags, 'db-path'),
                 profilePath: getString(flags, 'profile-path'),
                 profileDbPath: getString(flags, 'profile-db-path'),
@@ -143,21 +146,46 @@ async function main() {
             console.log(renderImport(result));
             break;
         }
+        case 'contradiction-scan': {
+            const scope = (getString(flags, 'scope') ?? 'project');
+            const result = await contradictionScanCommand({
+                scope,
+                wikiPath: getString(flags, 'wiki-path'),
+                dbPath: getString(flags, 'db-path'),
+            });
+            if (result.rate_limited) {
+                // eslint-disable-next-line no-console
+                console.log('Rate limited — last scan was less than 1 hour ago.');
+            }
+            else {
+                // eslint-disable-next-line no-console
+                console.log(`Scanned ${result.scanned_pairs} pairs, found ${result.contradictions.length} contradictions.`);
+                if (result.contradictions.length > 0) {
+                    // eslint-disable-next-line no-console
+                    console.log('Wrote contradictions.md to wiki root.');
+                }
+            }
+            break;
+        }
         case undefined:
         case 'help':
         case '-h':
         case '--help': {
             // eslint-disable-next-line no-console
-            console.log(`kg — KG-MCP CLI
+            console.log(`pinakes — Pinakes CLI
+
+All project data is stored under ~/.pinakes/projects/<mangled-project-root>/.
+Personal data is stored under ~/.pinakes/. Set PINAKES_ROOT to override.
 
 Usage:
-  kg serve   --wiki-path <dir> [--db-path <path>] [--profile-path <dir>] [--profile-db-path <path>]
-  kg rebuild --wiki-path <dir> [--db-path <path>] [--scope project|personal|both]
-  kg status  [--db-path <path>] [--wiki-path <dir>] [--profile-db-path <path>]
-  kg audit   [--tail] [--n <count>] [--scope project|personal] [--db-path <path>]
-  kg purge   --scope <project|personal> --confirm [--db-path <path>]
-  kg export  --scope <project|personal> [--out file.json] [--db-path <path>]
-  kg import  --scope <project|personal> --in file.json [--db-path <path>]`);
+  pinakes serve   [--project-root <dir>] [--wiki-path <dir>] [--db-path <path>] [--profile-path <dir>] [--profile-db-path <path>]
+  pinakes rebuild [--project-root <dir>] [--wiki-path <dir>] [--db-path <path>] [--scope project|personal|both]
+  pinakes status  [--project-root <dir>] [--db-path <path>] [--profile-db-path <path>]
+  pinakes audit   [--n <count>] [--scope project|personal] [--project-root <dir>] [--db-path <path>]
+  pinakes purge   --scope <project|personal> --confirm [--project-root <dir>] [--db-path <path>]
+  pinakes export  --scope <project|personal> [--out file.json] [--project-root <dir>] [--db-path <path>]
+  pinakes import  --scope <project|personal> --in file.json [--project-root <dir>] [--db-path <path>]
+  pinakes contradiction-scan [--scope project|personal] [--project-root <dir>] [--wiki-path <dir>] [--db-path <path>]`);
             break;
         }
         default:
@@ -165,7 +193,7 @@ Usage:
     }
 }
 main().catch((err) => {
-    logger.error({ err }, 'kg cli failed');
+    logger.error({ err }, 'pinakes cli failed');
     console.error(err instanceof Error ? err.message : err);
     process.exit(1);
 });

package/dist/cli/index.js.map

@@ -1 +1 @@
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package/dist/cli/purge.d.ts

@@ -1,8 +1,8 @@
 /**
- * `kg purge --scope <s> [--confirm]` — delete a scope's SQLite DB file.
+ * `pinakes purge --scope <s> [--confirm]` — delete a scope's SQLite DB file.
  *
  * This is the nuclear option: wipes the DB entirely. The user can rebuild
- * from markdown afterwards (`kg rebuild`). Requires `--confirm` flag to
+ * from markdown afterwards (`pinakes rebuild`). Requires `--confirm` flag to
  * prevent accidental deletion.
  */
 export interface PurgeOptions {

package/dist/cli/purge.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"purge.d.ts","sourceRoot":"","sources":["../../src/cli/purge.ts"],"names":[],"mappings":"AAIA;;;;;;GAMG;AAEH,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,SAAS,GAAG,UAAU,CAAC;IAC9B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,YAAY,GAAG,WAAW,CA6B/D;AAED,wBAAgB,WAAW,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CAKvD"}
+{"version":3,"file":"purge.d.ts","sourceRoot":"","sources":["../../src/cli/purge.ts"],"names":[],"mappings":"AAGA;;;;;;GAMG;AAEH,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,SAAS,GAAG,UAAU,CAAC;IAC9B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,YAAY,GAAG,WAAW,CA6B/D;AAED,wBAAgB,WAAW,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CAKvD"}

package/dist/cli/purge.js

@@ -1,8 +1,7 @@
 import { existsSync, unlinkSync } from 'node:fs';
-import { homedir } from 'node:os';
-import { dirname, isAbsolute, resolve } from 'node:path';
+import { resolveCliDbPath } from '../paths.js';
 export function purgeCommand(options) {
-    const dbPath = resolveDbPath(options, options.scope);
+    const dbPath = resolveCliDbPath(options, options.scope);
     if (!options.confirm) {
         return {
             scope: options.scope,
@@ -34,24 +33,4 @@ export function renderPurge(result) {
     }
     return `${result.scope} DB NOT deleted: ${result.reason} (${result.dbPath})`;
 }
-// ----------------------------------------------------------------------------
-// Path helpers
-// ----------------------------------------------------------------------------
-function resolveDbPath(options, scope) {
-    if (scope === 'personal') {
-        if (options.profileDbPath)
-            return resolveAbs(options.profileDbPath);
-        const env = process.env.KG_PROFILE_PATH;
-        const profileDir = env ? resolveAbs(env) : resolve(homedir(), '.pharos/profile');
-        return resolve(profileDir, 'kg.db');
-    }
-    if (options.dbPath)
-        return resolveAbs(options.dbPath);
-    if (options.wikiPath)
-        return resolve(dirname(resolveAbs(options.wikiPath)), '.pinakes', 'pinakes.db');
-    return resolve(process.cwd(), '.pinakes', 'pinakes.db');
-}
-function resolveAbs(p) {
-    return isAbsolute(p) ? p : resolve(process.cwd(), p);
-}
 //# sourceMappingURL=purge.js.map

package/dist/cli/purge.js.map

@@ -1 +1 @@
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+{"version":3,"file":"purge.js","sourceRoot":"","sources":["../../src/cli/purge.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAyB/C,MAAM,UAAU,YAAY,CAAC,OAAqB;IAChD,MAAM,MAAM,GAAG,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,KAAK,CAAC,CAAC;IAExD,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,CAAC;QACrB,OAAO;YACL,KAAK,EAAE,OAAO,CAAC,KAAK;YACpB,MAAM;YACN,OAAO,EAAE,KAAK;YACd,MAAM,EAAE,gDAAgD;SACzD,CAAC;IACJ,CAAC;IAED,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;QACxB,OAAO;YACL,KAAK,EAAE,OAAO,CAAC,KAAK;YACpB,MAAM;YACN,OAAO,EAAE,KAAK;YACd,MAAM,EAAE,8BAA8B;SACvC,CAAC;IACJ,CAAC;IAED,0DAA0D;IAC1D,UAAU,CAAC,MAAM,CAAC,CAAC;IACnB,KAAK,MAAM,MAAM,IAAI,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,CAAC;QACtC,MAAM,OAAO,GAAG,MAAM,GAAG,MAAM,CAAC;QAChC,IAAI,UAAU,CAAC,OAAO,CAAC;YAAE,UAAU,CAAC,OAAO,CAAC,CAAC;IAC/C,CAAC;IAED,OAAO,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC;AACzD,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,MAAmB;IAC7C,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;QACnB,OAAO,UAAU,MAAM,CAAC,KAAK,QAAQ,MAAM,CAAC,MAAM,EAAE,CAAC;IACvD,CAAC;IACD,OAAO,GAAG,MAAM,CAAC,KAAK,oBAAoB,MAAM,CAAC,MAAM,KAAK,MAAM,CAAC,MAAM,GAAG,CAAC;AAC/E,CAAC"}

package/dist/cli/rebuild.d.ts

@@ -1,6 +1,6 @@
 import { type Embedder } from '../retrieval/embedder.js';
 /**
- * `kg rebuild` — full-rebuild-from-markdown CLI subcommand for KG-MCP Phase 2.
+ * `pinakes rebuild` — full-rebuild-from-markdown CLI subcommand for Pinakes Phase 2.
  *
  * Walks the wiki directory, calls `IngesterService.ingestFile` for every
  * markdown file, prints a summary. Default behavior: ingest both project and
@@ -19,13 +19,15 @@ import { type Embedder } from '../retrieval/embedder.js';
  * cold; warm chunks via per-chunk SHA skip drop this to ~5ms).
  */
 export interface RebuildOptions {
-    /** Project wiki directory (required) */
-    wikiPath: string;
-    /** Project DB path (default: `<wikiPath>/../kg.db`) */
+    /** Project root directory (default: cwd). Used to derive the mirrored data dir under ~/.pinakes/projects/. */
+    projectRoot?: string;
+    /** Project wiki directory (default: `~/.pinakes/projects/<mangled-root>/wiki`) */
+    wikiPath?: string;
+    /** Project DB path (default: `~/.pinakes/projects/<mangled-root>/pinakes.db`) */
     dbPath?: string;
-    /** Personal wiki directory (default: `~/.pharos/profile/wiki`) */
+    /** Personal wiki directory (default: `~/.pinakes/wiki`) */
     profilePath?: string;
-    /** Personal DB path (default: `<profilePath>/../kg.db`) */
+    /** Personal DB path (default: `~/.pinakes/pinakes.db`) */
     profileDbPath?: string;
     /** Which scopes to rebuild: 'project' | 'personal' | 'both' (default: 'both', falls back to 'project' if profile dir missing) */
     scope?: 'project' | 'personal' | 'both';

package/dist/cli/rebuild.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"rebuild.d.ts","sourceRoot":"","sources":["../../src/cli/rebuild.ts"],"names":[],"mappings":"AAaA,OAAO,EAAwB,KAAK,QAAQ,EAAE,MAAM,0BAA0B,CAAC;AAE/E;;;;;;;;;;;;;;;;;;GAkBG;AAEH,MAAM,WAAW,cAAc;IAC7B,8GAA8G;IAC9G,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,kFAAkF;IAClF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,iFAAiF;IACjF,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,2DAA2D;IAC3D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0DAA0D;IAC1D,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,iIAAiI;IACjI,KAAK,CAAC,EAAE,SAAS,GAAG,UAAU,GAAG,MAAM,CAAC;IACxC;;;OAGG;IACH,QAAQ,CAAC,EAAE,QAAQ,CAAC;CACrB;AAED,MAAM,WAAW,cAAc;IAC7B,KAAK,EAAE,SAAS,GAAG,UAAU,CAAC;IAC9B,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,YAAY,EAAE,MAAM,CAAC;IACrB,cAAc,EAAE,MAAM,CAAC;IACvB,cAAc,EAAE,MAAM,CAAC;IACvB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;;;;GAKG;AACH,wBAAsB,cAAc,CAAC,OAAO,EAAE,cAAc,GAAG,OAAO,CAAC,cAAc,EAAE,CAAC,CA2CvF"}

package/dist/cli/rebuild.js

@@ -1,10 +1,9 @@
 import { existsSync } from 'node:fs';
-import { homedir } from 'node:os';
-import { dirname, isAbsolute, resolve } from 'node:path';
 import { closeDb, openDb } from '../db/client.js';
 import { IngesterService } from '../ingest/ingester.js';
 import { listMarkdownFiles } from '../ingest/manifest.js';
 import { logger } from '../observability/logger.js';
+import { resolveAbs, projectWikiPath as defaultProjectWikiPath, projectDbPath as defaultProjectDbPath, personalWikiPath as defaultPersonalWikiPath, personalDbPath as defaultPersonalDbPath, } from '../paths.js';
 import { TransformersEmbedder } from '../retrieval/embedder.js';
 /**
  * Run a full-rebuild against one or both scopes. Returns a list of summaries
@@ -14,13 +13,14 @@ import { TransformersEmbedder } from '../retrieval/embedder.js';
  */
 export async function rebuildCommand(options) {
     const summaries = [];
-    const projectWiki = resolveAbs(options.wikiPath);
+    const projectRoot = resolveAbs(options.projectRoot ?? process.cwd());
+    const projectWiki = resolveAbs(options.wikiPath ?? defaultProjectWikiPath(projectRoot));
     if (!existsSync(projectWiki)) {
         throw new Error(`wiki path does not exist: ${projectWiki}`);
     }
-    const projectDbPath = resolveAbs(options.dbPath ?? defaultDbPathFor(projectWiki));
-    const profileWiki = resolveAbs(options.profilePath ?? defaultProfileWikiPath());
-    const profileDbPath = resolveAbs(options.profileDbPath ?? defaultDbPathFor(profileWiki));
+    const projectDbPath = resolveAbs(options.dbPath ?? defaultProjectDbPath(projectRoot));
+    const profileWiki = resolveAbs(options.profilePath ?? defaultPersonalWikiPath());
+    const profileDbPath = resolveAbs(options.profileDbPath ?? defaultPersonalDbPath());
     const scope = options.scope ?? 'both';
     const includeProject = scope === 'project' || scope === 'both';
     const includePersonal = (scope === 'personal' || scope === 'both') && existsSync(profileWiki);
@@ -56,12 +56,12 @@ async function rebuildOneScope(args) {
         if (scope === 'project') {
             try {
                 const orphaned = bundle.writer
-                    .prepare("SELECT COUNT(*) AS cnt FROM kg_nodes WHERE scope = 'project' AND source_uri LIKE 'file://%'")
+                    .prepare("SELECT COUNT(*) AS cnt FROM pinakes_nodes WHERE scope = 'project' AND source_uri LIKE 'file://%'")
                     .get();
                 if (orphaned.cnt > 0) {
                     logger.info({ count: orphaned.cnt }, 'rebuild: deleting legacy absolute-path rows');
-                    bundle.writer.exec("DELETE FROM kg_chunks_vec WHERE rowid IN (SELECT c.rowid FROM kg_chunks c JOIN kg_nodes n ON c.node_id = n.id WHERE n.scope = 'project' AND n.source_uri LIKE 'file://%')");
-                    bundle.writer.exec("DELETE FROM kg_nodes WHERE scope = 'project' AND source_uri LIKE 'file://%'");
+                    bundle.writer.exec("DELETE FROM pinakes_chunks_vec WHERE rowid IN (SELECT c.rowid FROM pinakes_chunks c JOIN pinakes_nodes n ON c.node_id = n.id WHERE n.scope = 'project' AND n.source_uri LIKE 'file://%')");
+                    bundle.writer.exec("DELETE FROM pinakes_nodes WHERE scope = 'project' AND source_uri LIKE 'file://%'");
                 }
             }
             catch (err) {
@@ -102,26 +102,4 @@ async function rebuildOneScope(args) {
         closeDb(bundle);
     }
 }
-// ----------------------------------------------------------------------------
-// Path defaults
-// ----------------------------------------------------------------------------
-function resolveAbs(p) {
-    return isAbsolute(p) ? p : resolve(process.cwd(), p);
-}
-/**
- * Default DB path for a given wiki directory: `<wikiDir>/../.pinakes/pinakes.db`.
- */
-function defaultDbPathFor(wikiDir) {
-    return resolve(dirname(wikiDir), '.pinakes', 'pinakes.db');
-}
-/**
- * Default personal wiki path. Honors `KG_PROFILE_PATH` env var, else
- * `~/.pharos/profile/wiki`.
- */
-function defaultProfileWikiPath() {
-    const env = process.env.KG_PROFILE_PATH;
-    if (env)
-        return resolve(env, 'wiki');
-    return resolve(homedir(), '.pharos/profile/wiki');
-}
 //# sourceMappingURL=rebuild.js.map

package/dist/cli/rebuild.js.map

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package/dist/cli/serve.d.ts

@@ -1,14 +1,14 @@
 #!/usr/bin/env node
 import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
 /**
- * `kg serve` — stdio MCP server for KG-MCP Phase 2.
+ * `pinakes serve` — stdio MCP server for Pinakes Phase 2.
  *
  * Replaces Phase 1's `src/spike.ts` with the production wiring:
  *   1. Open project + (optional) personal SQLite DBs (one writer + 2 readers each)
  *   2. Warm the embedder singleton
  *   3. Run startup consistency check against the manifest → re-ingest stale files
  *   4. Start chokidar watchers for both scopes (with 2s debounce, drop-oldest)
- *   5. Build the McpServer + register `kg_search` and `kg_execute`
+ *   5. Build the McpServer + register `search` and `execute`
  *   6. Connect to StdioServerTransport and listen
  *
  * Graceful shutdown on SIGTERM/SIGINT closes the watchers, drains in-flight
@@ -21,13 +21,15 @@ import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
  * from it until the 15-test privacy adversarial suite lands in Phase 5.
  */
 export interface ServeOptions {
-    /** Project wiki directory (required) */
-    wikiPath: string;
-    /** Project DB path (default: `<wikiPath>/../.pinakes/pinakes.db`) */
+    /** Project root directory (default: cwd). Used to derive the mirrored data dir under ~/.pinakes/projects/. */
+    projectRoot?: string;
+    /** Project wiki directory (default: `~/.pinakes/projects/<mangled-root>/wiki`) */
+    wikiPath?: string;
+    /** Project DB path (default: `~/.pinakes/projects/<mangled-root>/pinakes.db`) */
     dbPath?: string;
-    /** Personal wiki directory (default: `~/.pharos/profile/wiki` if it exists, else skip personal) */
+    /** Personal wiki directory (default: `~/.pinakes/wiki`) */
     profilePath?: string;
-    /** Personal DB path (default: `<profilePath>/../.kg/kg.db`) */
+    /** Personal DB path (default: `~/.pinakes/pinakes.db`) */
     profileDbPath?: string;
 }
 interface ServerHandle {

package/dist/cli/serve.d.ts.map

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