@pella-labs/pinakes 0.1.10 → 0.3.0

package/dist/retrieval/embedder.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"embedder.d.ts","sourceRoot":"","sources":["../../src/retrieval/embedder.ts"],"names":[],"mappings":"AAIA;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AAEH,6FAA6F;AAC7F,eAAO,MAAM,aAAa,MAAM,CAAC;AAEjC;;;;GAIG;AACH,MAAM,WAAW,QAAQ;IACvB,0EAA0E;IAC1E,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,0FAA0F;IAC1F,MAAM,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;IACxB,mEAAmE;IACnE,KAAK,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC,CAAC;CAC5C;AAQD;;;;;;;;;;GAUG;AACH,qBAAa,oBAAqB,YAAW,QAAQ;IAKvC,OAAO,CAAC,QAAQ,CAAC,SAAS;IAJtC,QAAQ,CAAC,GAAG,OAAiB;IAE7B,OAAO,CAAC,eAAe,CAAmD;gBAE7C,SAAS,GAAE,MAAsB;IAOxD,MAAM,IAAI,OAAO,CAAC,IAAI,CAAC;IAIvB,KAAK,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC;YAclC,WAAW;CAmB1B;AAMD;;;;;;;;GAQG;AACH,qBAAa,gBAAiB,YAAW,QAAQ;IAKnC,OAAO,CAAC,QAAQ,CAAC,KAAK;IAJlC,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,mFAAmF;IACnF,KAAK,SAAK;gBAEmB,KAAK,EAAE,QAAQ;IAItC,MAAM,IAAI,OAAO,CAAC,IAAI,CAAC;IAIvB,KAAK,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC;IAKhD,KAAK,IAAI,IAAI;CAGd;AAMD;;;GAGG;AACH,qBAAa,cAAe,YAAW,QAAQ;IAI3C,OAAO,CAAC,QAAQ,CAAC,OAAO;IACxB,OAAO,CAAC,QAAQ,CAAC,KAAK;IAJxB,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;gBAGF,OAAO,EAAE,MAAM,EACf,KAAK,EAAE,MAAM,EAC9B,GAAG,GAAE,MAAsB;IAKvB,MAAM,IAAI,OAAO,CAAC,IAAI,CAAC;IAIvB,KAAK,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC;CAkBjD;AAMD;;;GAGG;AACH,qBAAa,cAAe,YAAW,QAAQ;IAI3C,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,KAAK;IAJxB,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;gBAGF,MAAM,EAAE,MAAM,EACd,KAAK,GAAE,MAAwB,EAChD,GAAG,GAAE,MAAsB;IAKvB,MAAM,IAAI,OAAO,CAAC,IAAI,CAAC;IAEvB,KAAK,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC;CAqBjD;AAMD;;;GAGG;AACH,qBAAa,cAAe,YAAW,QAAQ;IAI3C,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,KAAK;IAJxB,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;gBAGF,MAAM,EAAE,MAAM,EACd,KAAK,GAAE,MAAiC,EACzD,GAAG,GAAE,MAAsB;IAKvB,MAAM,IAAI,OAAO,CAAC,IAAI,CAAC;IAEvB,KAAK,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC;CAqBjD;AAMD,MAAM,MAAM,aAAa,GAAG,cAAc,GAAG,QAAQ,GAAG,QAAQ,GAAG,QAAQ,CAAC;AAE5E;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,QAAQ,CAAC,EAAE,aAAa,GAAG,QAAQ,CAyBjE;AAQD;;;;GAIG;AACH,wBAAgB,kBAAkB,IAAI,oBAAoB,CAKzD"}

package/dist/retrieval/embedder.js

@@ -7,15 +7,15 @@ import { logger } from '../observability/logger.js';
  * between the ingest path (computing chunk embeddings on insert) and the
  * future query path in Phase 4 (computing query embeddings for vector
  * search). Putting it under `retrieval/` keeps the code-mode bindings'
- * mental model consistent — `kg.vec()` and ingest both call into the same
+ * mental model consistent — `pinakes.vec()` and ingest both call into the same
  * factory.
  *
  * **Provider strategy** (CLAUDE.md §AI Rules #3): Phase 2 ships only the
  * bundled MiniLM provider. Phase 4 adds the env-driven factory:
- *   - `KG_EMBED_PROVIDER=transformers` (default, this file)
- *   - `KG_EMBED_PROVIDER=ollama` (HTTP, user-controlled)
- *   - `KG_EMBED_PROVIDER=voyage` (HTTPS, paid)
- *   - `KG_EMBED_PROVIDER=openai` (HTTPS, paid)
+ *   - `PINAKES_EMBED_PROVIDER=transformers` (default, this file)
+ *   - `PINAKES_EMBED_PROVIDER=ollama` (HTTP, user-controlled)
+ *   - `PINAKES_EMBED_PROVIDER=voyage` (HTTPS, paid)
+ *   - `PINAKES_EMBED_PROVIDER=openai` (HTTPS, paid)
  *
  * **Failure mode** (CLAUDE.md §AI Rules #4): if the embedder fails during
  * ingest, the ingester logs a warning and inserts the node + chunks WITHOUT
@@ -123,7 +123,7 @@ export class CountingEmbedder {
 // ----------------------------------------------------------------------------
 /**
  * Ollama embedder via HTTP POST to `/api/embeddings`.
- * Requires `KG_OLLAMA_URL` and `KG_OLLAMA_MODEL` env vars.
+ * Requires `PINAKES_OLLAMA_URL` and `PINAKES_OLLAMA_MODEL` env vars.
  */
 export class OllamaEmbedder {
     baseUrl;
@@ -159,7 +159,7 @@ export class OllamaEmbedder {
 // ----------------------------------------------------------------------------
 /**
  * Voyage AI embedder via HTTPS POST to `https://api.voyageai.com/v1/embeddings`.
- * Requires `KG_VOYAGE_API_KEY` env var.
+ * Requires `PINAKES_VOYAGE_API_KEY` env var.
  */
 export class VoyageEmbedder {
     apiKey;
@@ -196,7 +196,7 @@ export class VoyageEmbedder {
 // ----------------------------------------------------------------------------
 /**
  * OpenAI embedder via HTTPS POST to `https://api.openai.com/v1/embeddings`.
- * Requires `KG_OPENAI_API_KEY` env var.
+ * Requires `PINAKES_OPENAI_API_KEY` env var.
  */
 export class OpenAIEmbedder {
     apiKey;
@@ -234,25 +234,25 @@ export class OpenAIEmbedder {
  * provider is unrecognized.
  */
 export function createEmbedder(provider) {
-    const p = provider ?? process.env['KG_EMBED_PROVIDER'] ?? 'transformers';
+    const p = provider ?? process.env['PINAKES_EMBED_PROVIDER'] ?? 'transformers';
     switch (p) {
         case 'ollama': {
-            const url = process.env['KG_OLLAMA_URL'] ?? 'http://localhost:11434';
-            const model = process.env['KG_OLLAMA_MODEL'] ?? 'nomic-embed-text';
+            const url = process.env['PINAKES_OLLAMA_URL'] ?? 'http://localhost:11434';
+            const model = process.env['PINAKES_OLLAMA_MODEL'] ?? 'nomic-embed-text';
             return new OllamaEmbedder(url, model);
         }
         case 'voyage': {
-            const key = process.env['KG_VOYAGE_API_KEY'];
+            const key = process.env['PINAKES_VOYAGE_API_KEY'];
             if (!key)
-                throw new Error('KG_VOYAGE_API_KEY is required for voyage embedder');
-            const model = process.env['KG_EMBED_MODEL'] ?? 'voyage-code-3';
+                throw new Error('PINAKES_VOYAGE_API_KEY is required for voyage embedder');
+            const model = process.env['PINAKES_EMBED_MODEL'] ?? 'voyage-code-3';
             return new VoyageEmbedder(key, model);
         }
         case 'openai': {
-            const key = process.env['KG_OPENAI_API_KEY'];
+            const key = process.env['PINAKES_OPENAI_API_KEY'];
             if (!key)
-                throw new Error('KG_OPENAI_API_KEY is required for openai embedder');
-            const model = process.env['KG_EMBED_MODEL'] ?? 'text-embedding-3-small';
+                throw new Error('PINAKES_OPENAI_API_KEY is required for openai embedder');
+            const model = process.env['PINAKES_EMBED_MODEL'] ?? 'text-embedding-3-small';
             return new OpenAIEmbedder(key, model);
         }
         case 'transformers':

package/dist/retrieval/embedder.js.map

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package/dist/retrieval/expand.d.ts

@@ -0,0 +1,18 @@
+import type { LlmProvider } from '../llm/provider.js';
+export interface ExpandResult {
+    original: string;
+    alternatives: string[];
+}
+/**
+ * Expand a query into 2 alternative phrasings via an LLM.
+ *
+ * Returns `{ original, alternatives: [] }` if:
+ * - Provider is not available
+ * - Query is too short (< 3 words — expansion adds noise for short queries)
+ * - LLM call fails (non-fatal)
+ * - Response can't be parsed as a JSON array of strings
+ */
+export declare function expandQuery(query: string, provider: LlmProvider): Promise<ExpandResult>;
+/** Clear the cache — test-only. */
+export declare function __clearExpansionCacheForTests(): void;
+//# sourceMappingURL=expand.d.ts.map

package/dist/retrieval/expand.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"expand.d.ts","sourceRoot":"","sources":["../../src/retrieval/expand.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AAoBtD,MAAM,WAAW,YAAY;IAC3B,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,EAAE,MAAM,EAAE,CAAC;CACxB;AAED;;;;;;;;GAQG;AACH,wBAAsB,WAAW,CAC/B,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,WAAW,GACpB,OAAO,CAAC,YAAY,CAAC,CAwCvB;AA0BD,mCAAmC;AACnC,wBAAgB,6BAA6B,IAAI,IAAI,CAEpD"}

package/dist/retrieval/expand.js

@@ -0,0 +1,89 @@
+import { logger } from '../observability/logger.js';
+/**
+ * Multi-query expansion (D38, GBrain-inspired).
+ *
+ * Uses an LLM to generate 2 alternative phrasings of a search query,
+ * improving recall for ambiguous or jargon-heavy queries. Results from
+ * all query variants are merged via RRF in the caller.
+ *
+ * Non-fatal: if the provider is unavailable or the call fails, returns
+ * empty alternatives and the caller uses the original query only.
+ */
+const EXPANSION_SYSTEM = `You generate alternative search phrasings. Given a query, produce exactly 2 alternative phrasings that could help find relevant results. Return ONLY a JSON array of exactly 2 strings, no explanation.`;
+/** Module-level cache: query → alternatives. Max 100 entries, no TTL. */
+const cache = new Map();
+const MAX_CACHE = 100;
+/**
+ * Expand a query into 2 alternative phrasings via an LLM.
+ *
+ * Returns `{ original, alternatives: [] }` if:
+ * - Provider is not available
+ * - Query is too short (< 3 words — expansion adds noise for short queries)
+ * - LLM call fails (non-fatal)
+ * - Response can't be parsed as a JSON array of strings
+ */
+export async function expandQuery(query, provider) {
+    const original = query.trim();
+    // Short queries don't benefit from expansion
+    if (original.split(/\s+/).length < 3) {
+        return { original, alternatives: [] };
+    }
+    if (!provider.available()) {
+        return { original, alternatives: [] };
+    }
+    // Check cache
+    const cached = cache.get(original);
+    if (cached) {
+        return { original, alternatives: cached };
+    }
+    try {
+        const response = await provider.complete({
+            system: EXPANSION_SYSTEM,
+            prompt: original,
+            maxTokens: 100,
+        });
+        const alternatives = parseAlternatives(response);
+        if (alternatives.length > 0) {
+            // LRU-ish eviction: delete oldest entry if at capacity
+            if (cache.size >= MAX_CACHE) {
+                const firstKey = cache.keys().next().value;
+                if (firstKey !== undefined)
+                    cache.delete(firstKey);
+            }
+            cache.set(original, alternatives);
+        }
+        return { original, alternatives };
+    }
+    catch (err) {
+        logger.warn({ err, query: original }, 'query expansion failed (non-fatal)');
+        return { original, alternatives: [] };
+    }
+}
+/**
+ * Parse the LLM response as a JSON array of 2 strings.
+ * Returns empty array on any parse failure.
+ */
+function parseAlternatives(response) {
+    try {
+        // Try to extract JSON array from the response (may have surrounding text)
+        const match = response.match(/\[[\s\S]*\]/);
+        if (!match)
+            return [];
+        const parsed = JSON.parse(match[0]);
+        if (!Array.isArray(parsed))
+            return [];
+        const strings = parsed
+            .filter((item) => typeof item === 'string' && item.trim().length > 0)
+            .map((s) => s.trim())
+            .slice(0, 2);
+        return strings;
+    }
+    catch {
+        return [];
+    }
+}
+/** Clear the cache — test-only. */
+export function __clearExpansionCacheForTests() {
+    cache.clear();
+}
+//# sourceMappingURL=expand.js.map

package/dist/retrieval/expand.js.map

@@ -0,0 +1 @@
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package/dist/retrieval/fts.d.ts

@@ -2,8 +2,8 @@ import type { Database as BetterSqliteDatabase } from 'better-sqlite3';
 /**
  * FTS5 full-text search with BM25 ranking and optional snippet extraction.
  *
- * Extracted from `src/sandbox/bindings/kg.ts` so both the sandbox bindings
- * and the `kg_search` MCP tool can share the same query logic. The binding
+ * Extracted from `src/sandbox/bindings/pinakes.ts` so both the sandbox bindings
+ * and the `pinakes_search` MCP tool can share the same query logic. The binding
  * delegates here; the MCP tool calls `hybridSearch` which calls here.
  *
  * **Tokenizer**: `unicode61 remove_diacritics 2` (set in the migration).
@@ -27,7 +27,7 @@ export interface FtsResult {
  * Run an FTS5 MATCH query with BM25 ranking and snippet extraction.
  *
  * @param reader   A read-only `better-sqlite3` connection (from the read pool).
- * @param scope    `'project'` or `'personal'` — filters by `kg_nodes.scope`.
+ * @param scope    `'project'` or `'personal'` — filters by `pinakes_nodes.scope`.
  * @param query    Raw user/LLM query string (will be escaped).
  * @param limit    Max results (clamped to 1..100 by callers).
  * @returns        Results ranked by BM25 (lower rank = better match).

package/dist/retrieval/fts.js

@@ -2,7 +2,7 @@
  * Run an FTS5 MATCH query with BM25 ranking and snippet extraction.
  *
  * @param reader   A read-only `better-sqlite3` connection (from the read pool).
- * @param scope    `'project'` or `'personal'` — filters by `kg_nodes.scope`.
+ * @param scope    `'project'` or `'personal'` — filters by `pinakes_nodes.scope`.
  * @param query    Raw user/LLM query string (will be escaped).
  * @param limit    Max results (clamped to 1..100 by callers).
  * @returns        Results ranked by BM25 (lower rank = better match).
@@ -13,18 +13,18 @@ export function ftsQuery(reader, scope, query, limit) {
         return [];
     const rows = reader
         .prepare(`SELECT c.id AS id, c.text AS text,
-              snippet(kg_chunks_fts, 0, '', '', '…', 64) AS snippet,
+              snippet(pinakes_chunks_fts, 0, '', '', '…', 64) AS snippet,
               n.source_uri AS source_uri,
-              n.id AS node_id, bm25(kg_chunks_fts) AS rank,
+              n.id AS node_id, bm25(pinakes_chunks_fts) AS rank,
               n.confidence AS confidence,
               n.title AS title,
               n.section_path AS section_path
-         FROM kg_chunks_fts f
-         JOIN kg_chunks c ON c.rowid = f.rowid
-         JOIN kg_nodes n ON c.node_id = n.id
+         FROM pinakes_chunks_fts f
+         JOIN pinakes_chunks c ON c.rowid = f.rowid
+         JOIN pinakes_nodes n ON c.node_id = n.id
         WHERE n.scope = ?
-          AND kg_chunks_fts MATCH ?
-        ORDER BY bm25(kg_chunks_fts)
+          AND pinakes_chunks_fts MATCH ?
+        ORDER BY bm25(pinakes_chunks_fts)
         LIMIT ?`)
         .all(scope, escaped, limit);
     return rows;

package/dist/retrieval/graph.d.ts

@@ -0,0 +1,47 @@
+import type { Database as BetterSqliteDatabase } from 'better-sqlite3';
+/**
+ * Graph algorithms over the `pinakes_edges` table (D40).
+ *
+ * - **PageRank**: iterative power method (d=0.85, 20 iterations).
+ * - **Connected components**: BFS on undirected edge interpretation.
+ *
+ * Both implementations are pure JS over SQL-loaded adjacency data.
+ * No new dependencies.
+ */
+export interface PageRankOpts {
+    /** Damping factor (default 0.85). */
+    damping?: number;
+    /** Number of iterations (default 20, max 100). */
+    iterations?: number;
+    /** Max results to return (default 20, max 100). */
+    limit?: number;
+}
+export interface PageRankResult {
+    id: string;
+    source_uri: string;
+    title: string | null;
+    score: number;
+}
+/**
+ * Compute PageRank over the knowledge graph for a given scope.
+ *
+ * Uses the iterative power method:
+ *   PR(v) = (1-d)/N + d * Σ PR(u)/out(u) for u in in-neighbors(v)
+ *
+ * Dangling nodes (no outgoing edges) redistribute their rank evenly.
+ */
+export declare function pagerank(reader: BetterSqliteDatabase, scope: string, opts?: PageRankOpts): PageRankResult[];
+export interface ComponentResult {
+    component_id: number;
+    nodes: Array<{
+        id: string;
+        source_uri: string;
+        title: string | null;
+    }>;
+}
+/**
+ * Find connected components in the knowledge graph (undirected).
+ * Returns components sorted by size descending.
+ */
+export declare function connectedComponents(reader: BetterSqliteDatabase, scope: string): ComponentResult[];
+//# sourceMappingURL=graph.d.ts.map

package/dist/retrieval/graph.d.ts.map

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package/dist/retrieval/graph.js

@@ -0,0 +1,144 @@
+/**
+ * Compute PageRank over the knowledge graph for a given scope.
+ *
+ * Uses the iterative power method:
+ *   PR(v) = (1-d)/N + d * Σ PR(u)/out(u) for u in in-neighbors(v)
+ *
+ * Dangling nodes (no outgoing edges) redistribute their rank evenly.
+ */
+export function pagerank(reader, scope, opts) {
+    const d = opts?.damping ?? 0.85;
+    const iterations = Math.min(Math.max(opts?.iterations ?? 20, 1), 100);
+    const limit = Math.min(Math.max(opts?.limit ?? 20, 1), 100);
+    // Load all nodes
+    const nodes = reader
+        .prepare(`SELECT id, source_uri, title FROM pinakes_nodes WHERE scope = ?`)
+        .all(scope);
+    if (nodes.length === 0)
+        return [];
+    const N = nodes.length;
+    const nodeSet = new Set(nodes.map((n) => n.id));
+    // Load edges (only between nodes in this scope)
+    const edges = reader
+        .prepare(`SELECT e.src_id, e.dst_id FROM pinakes_edges e
+       JOIN pinakes_nodes ns ON e.src_id = ns.id
+       JOIN pinakes_nodes nd ON e.dst_id = nd.id
+       WHERE ns.scope = ? AND nd.scope = ?`)
+        .all(scope, scope);
+    // Build adjacency: outgoing edges and incoming edges
+    const outDegree = new Map();
+    const inEdges = new Map();
+    for (const nodeId of nodeSet) {
+        outDegree.set(nodeId, 0);
+        inEdges.set(nodeId, []);
+    }
+    for (const e of edges) {
+        if (!nodeSet.has(e.src_id) || !nodeSet.has(e.dst_id))
+            continue;
+        outDegree.set(e.src_id, (outDegree.get(e.src_id) ?? 0) + 1);
+        inEdges.get(e.dst_id).push(e.src_id);
+    }
+    // Initialize ranks
+    let ranks = new Map();
+    for (const nodeId of nodeSet) {
+        ranks.set(nodeId, 1 / N);
+    }
+    // Iterate
+    for (let iter = 0; iter < iterations; iter++) {
+        const newRanks = new Map();
+        // Collect dangling node rank sum
+        let danglingSum = 0;
+        for (const nodeId of nodeSet) {
+            if ((outDegree.get(nodeId) ?? 0) === 0) {
+                danglingSum += ranks.get(nodeId);
+            }
+        }
+        for (const nodeId of nodeSet) {
+            let inSum = 0;
+            for (const src of inEdges.get(nodeId)) {
+                inSum += ranks.get(src) / (outDegree.get(src) ?? 1);
+            }
+            // Add dangling redistribution
+            const pr = (1 - d) / N + d * (inSum + danglingSum / N);
+            newRanks.set(nodeId, pr);
+        }
+        ranks = newRanks;
+    }
+    // Build results, sort by descending score
+    const nodeMap = new Map(nodes.map((n) => [n.id, n]));
+    const results = [];
+    for (const [id, score] of ranks) {
+        const node = nodeMap.get(id);
+        if (node) {
+            results.push({
+                id: node.id,
+                source_uri: node.source_uri,
+                title: node.title,
+                score,
+            });
+        }
+    }
+    results.sort((a, b) => b.score - a.score);
+    return results.slice(0, limit);
+}
+/**
+ * Find connected components in the knowledge graph (undirected).
+ * Returns components sorted by size descending.
+ */
+export function connectedComponents(reader, scope) {
+    // Load all nodes
+    const nodes = reader
+        .prepare(`SELECT id, source_uri, title FROM pinakes_nodes WHERE scope = ?`)
+        .all(scope);
+    if (nodes.length === 0)
+        return [];
+    // Load edges (undirected: add both directions)
+    const edges = reader
+        .prepare(`SELECT e.src_id, e.dst_id FROM pinakes_edges e
+       JOIN pinakes_nodes ns ON e.src_id = ns.id
+       JOIN pinakes_nodes nd ON e.dst_id = nd.id
+       WHERE ns.scope = ? AND nd.scope = ?`)
+        .all(scope, scope);
+    // Build undirected adjacency list
+    const adj = new Map();
+    for (const n of nodes) {
+        adj.set(n.id, new Set());
+    }
+    for (const e of edges) {
+        adj.get(e.src_id)?.add(e.dst_id);
+        adj.get(e.dst_id)?.add(e.src_id);
+    }
+    // BFS to find components
+    const visited = new Set();
+    const components = [];
+    let componentId = 0;
+    for (const node of nodes) {
+        if (visited.has(node.id))
+            continue;
+        const component = [];
+        const queue = [node.id];
+        visited.add(node.id);
+        while (queue.length > 0) {
+            const current = queue.shift();
+            component.push(current);
+            for (const neighbor of adj.get(current) ?? []) {
+                if (!visited.has(neighbor)) {
+                    visited.add(neighbor);
+                    queue.push(neighbor);
+                }
+            }
+        }
+        const nodeMap = new Map(nodes.map((n) => [n.id, n]));
+        components.push({
+            component_id: componentId++,
+            nodes: component.map((id) => {
+                const n = nodeMap.get(id);
+                return { id: n.id, source_uri: n.source_uri, title: n.title };
+            }),
+        });
+    }
+    // Sort by component size descending
+    components.sort((a, b) => b.nodes.length - a.nodes.length);
+    return components;
+}
+//# sourceMappingURL=graph.js.map

package/dist/retrieval/graph.js.map

@@ -0,0 +1 @@
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package/dist/retrieval/hybrid.d.ts

@@ -16,6 +16,8 @@ export interface HybridResult {
 export interface HybridSearchOpts {
     limit?: number;
     rrf_k?: number;
+    /** Set to false to disable post-RRF dedup (default: true). */
+    dedup?: boolean;
 }
 /**
  * Run a hybrid FTS5 + vector search with RRF fusion.
@@ -40,4 +42,12 @@ export declare function hybridSearch(reader: BetterSqliteDatabase, scope: string
  * Exported for direct testing — `hybridSearch` is the normal entry point.
  */
 export declare function rrfFuse(ftsResults: FtsResult[], vecResults: VecResult[], rrfK: number, limit: number): HybridResult[];
+/**
+ * Fuse N lists of HybridResult via RRF (D38, multi-query expansion).
+ *
+ * Generalizes the 2-list `rrfFuse` to arbitrary N lists. Each list
+ * assigns 1-based ranks; scores accumulate across all lists a result
+ * appears in.
+ */
+export declare function rrfFuseMulti(lists: HybridResult[][], rrfK: number, limit: number): HybridResult[];
 //# sourceMappingURL=hybrid.d.ts.map

package/dist/retrieval/hybrid.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"hybrid.d.ts","sourceRoot":"","sources":["../../src/retrieval/hybrid.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,IAAI,oBAAoB,EAAE,MAAM,gBAAgB,CAAC;AAEvE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAE9C,OAAO,EAAY,KAAK,SAAS,EAAE,MAAM,UAAU,CAAC;AACpD,OAAO,EAAa,KAAK,SAAS,EAAE,MAAM,UAAU,CAAC;AAuBrD,MAAM,WAAW,YAAY;IAC3B,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,gBAAgB;IAC/B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,8DAA8D;IAC9D,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAED;;;;;;;;;;;;GAYG;AACH,wBAAsB,YAAY,CAChC,MAAM,EAAE,oBAAoB,EAC5B,KAAK,EAAE,MAAM,EACb,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,QAAQ,EAClB,IAAI,CAAC,EAAE,gBAAgB,GACtB,OAAO,CAAC,YAAY,EAAE,CAAC,CAoBzB;AAED;;;;;;;GAOG;AACH,wBAAgB,OAAO,CACrB,UAAU,EAAE,SAAS,EAAE,EACvB,UAAU,EAAE,SAAS,EAAE,EACvB,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,GACZ,YAAY,EAAE,CAiEhB;AAED;;;;;;GAMG;AACH,wBAAgB,YAAY,CAC1B,KAAK,EAAE,YAAY,EAAE,EAAE,EACvB,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,GACZ,YAAY,EAAE,CAyChB"}

package/dist/retrieval/hybrid.js

@@ -1,3 +1,4 @@
+import { dedupResults } from './dedup.js';
 import { ftsQuery } from './fts.js';
 import { vecSearch } from './vec.js';
 /**
@@ -35,14 +36,20 @@ const DEFAULT_RRF_K = 60;
 export async function hybridSearch(reader, scope, query, embedder, opts) {
     const limit = Math.min(Math.max(opts?.limit ?? 20, 1), 100);
     const rrfK = opts?.rrf_k ?? DEFAULT_RRF_K;
+    const shouldDedup = opts?.dedup !== false;
     // Over-fetch from each source so RRF has good coverage.
-    const fetchLimit = Math.min(limit * 2, 100);
+    // When dedup is on, fetch extra since dedup will remove some results.
+    const dedupOverfetch = shouldDedup ? 3 : 2;
+    const fetchLimit = Math.min(limit * dedupOverfetch, 100);
     // Run both queries. Vec is async (embedding), FTS is sync.
     const [ftsResults, vecResults] = await Promise.all([
         Promise.resolve(ftsQuery(reader, scope, query, fetchLimit)),
         vecSearch(reader, scope, query, embedder, fetchLimit),
     ]);
-    return rrfFuse(ftsResults, vecResults, rrfK, limit);
+    const fused = rrfFuse(ftsResults, vecResults, rrfK, shouldDedup ? limit * 2 : limit);
+    if (!shouldDedup)
+        return fused;
+    return dedupResults(fused).slice(0, limit);
 }
 /**
  * Fuse FTS and vec results via equal-weight Reciprocal Rank Fusion.
@@ -117,4 +124,52 @@ export function rrfFuse(ftsResults, vecResults, rrfK, limit) {
         section_path: r.section_path,
     }));
 }
+/**
+ * Fuse N lists of HybridResult via RRF (D38, multi-query expansion).
+ *
+ * Generalizes the 2-list `rrfFuse` to arbitrary N lists. Each list
+ * assigns 1-based ranks; scores accumulate across all lists a result
+ * appears in.
+ */
+export function rrfFuseMulti(lists, rrfK, limit) {
+    const merged = new Map();
+    for (const list of lists) {
+        for (let i = 0; i < list.length; i++) {
+            const r = list[i];
+            const rrfScore = 1 / (rrfK + (i + 1));
+            const existing = merged.get(r.id);
+            if (existing) {
+                existing._rrfScore += rrfScore;
+                if (r.snippet && !existing.snippet)
+                    existing.snippet = r.snippet;
+            }
+            else {
+                merged.set(r.id, {
+                    id: r.id,
+                    text: r.text,
+                    source_uri: r.source_uri,
+                    node_id: r.node_id,
+                    score: 0,
+                    snippet: r.snippet,
+                    confidence: r.confidence,
+                    title: r.title ?? null,
+                    section_path: r.section_path ?? '',
+                    _rrfScore: rrfScore,
+                });
+            }
+        }
+    }
+    const sorted = [...merged.values()].sort((a, b) => b._rrfScore - a._rrfScore);
+    return sorted.slice(0, limit).map((r) => ({
+        id: r.id,
+        text: r.text,
+        source_uri: r.source_uri,
+        node_id: r.node_id,
+        score: r._rrfScore,
+        snippet: r.snippet,
+        confidence: r.confidence,
+        title: r.title,
+        section_path: r.section_path,
+    }));
+}
 //# sourceMappingURL=hybrid.js.map

package/dist/retrieval/hybrid.js.map

@@ -1 +1 @@
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