@pella-labs/pinakes 0.1.10 → 0.3.0

package/dist/retrieval/vec.d.ts

@@ -5,8 +5,8 @@ import type { Embedder } from './embedder.js';
  *
  * The query embedding is computed on the fly by the caller-provided embedder.
  * The sqlite-vec `MATCH` operator performs an approximate nearest-neighbor
- * search against `kg_chunks_vec`, returning rowids + cosine distances.
- * We join back to `kg_chunks` + `kg_nodes` for the full result shape.
+ * search against `pinakes_chunks_vec`, returning rowids + cosine distances.
+ * We join back to `pinakes_chunks` + `pinakes_nodes` for the full result shape.
  *
  * **Graceful degradation**: if the vec table is empty or the embedder fails,
  * returns an empty array (never throws on query path).

package/dist/retrieval/vec.js

@@ -19,9 +19,9 @@ export function vecQuery(reader, scope, embedding, limit) {
                 n.confidence AS confidence,
                 n.title AS title,
                 n.section_path AS section_path
-           FROM kg_chunks_vec v
-           JOIN kg_chunks c ON c.rowid = v.rowid
-           JOIN kg_nodes n ON c.node_id = n.id
+           FROM pinakes_chunks_vec v
+           JOIN pinakes_chunks c ON c.rowid = v.rowid
+           JOIN pinakes_nodes n ON c.node_id = n.id
           WHERE v.embedding MATCH ?
             AND k = ?
             AND n.scope = ?

package/dist/sandbox/bindings/install.d.ts

@@ -1,22 +1,22 @@
 import type { QuickJSContext } from 'quickjs-emscripten';
-import { type KgBindingDeps } from './kg.js';
+import { type PinakesBindingDeps } from './pinakes.js';
 /**
  * All deps needed by the binding surface. Supports single-scope
  * (project-only or personal-only) and dual-scope (both).
  *
- * Privacy invariant: if `personal` is undefined, `kg.personal`
+ * Privacy invariant: if `personal` is undefined, `pinakes.personal`
  * does NOT exist in the sandbox — not undefined, not null, absent.
  */
 export interface BindingDeps {
-    project?: KgBindingDeps;
-    personal?: KgBindingDeps;
+    project?: PinakesBindingDeps;
+    personal?: PinakesBindingDeps;
     maxTokens: number;
     logs: string[];
 }
 /**
  * Install all sandbox bindings on a fresh QuickJS context:
  *   1. `logger.log(...)` capture
- *   2. `kg.project.*` and/or `kg.personal.*` (scope-dependent)
+ *   2. `pinakes.project.*` and/or `pinakes.personal.*` (scope-dependent)
  *   3. `budget.fit()`
  */
 export declare function installBindings(context: QuickJSContext, deps: BindingDeps): void;

package/dist/sandbox/bindings/install.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"install.d.ts","sourceRoot":"","sources":["../../../src/sandbox/bindings/install.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAGzD,OAAO,EAA0B,KAAK,kBAAkB,EAAE,MAAM,cAAc,CAAC;AAG/E;;;;;;GAMG;AACH,MAAM,WAAW,WAAW;IAC1B,OAAO,CAAC,EAAE,kBAAkB,CAAC;IAC7B,QAAQ,CAAC,EAAE,kBAAkB,CAAC;IAC9B,SAAS,EAAE,MAAM,CAAC;IAClB,IAAI,EAAE,MAAM,EAAE,CAAC;CAChB;AAED;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,cAAc,EAAE,IAAI,EAAE,WAAW,GAAG,IAAI,CAIhF"}

package/dist/sandbox/bindings/install.js

@@ -1,15 +1,15 @@
 import { installLogger } from './logger.js';
-import { installKgBindings } from './kg.js';
+import { installPinakesBindings } from './pinakes.js';
 import { installBudgetBindings } from './budget.js';
 /**
  * Install all sandbox bindings on a fresh QuickJS context:
  *   1. `logger.log(...)` capture
- *   2. `kg.project.*` and/or `kg.personal.*` (scope-dependent)
+ *   2. `pinakes.project.*` and/or `pinakes.personal.*` (scope-dependent)
  *   3. `budget.fit()`
  */
 export function installBindings(context, deps) {
     installLogger(context, deps.logs);
-    installKgBindings(context, deps.project, deps.personal);
+    installPinakesBindings(context, deps.project, deps.personal);
     installBudgetBindings(context, deps.maxTokens);
 }
 //# sourceMappingURL=install.js.map

package/dist/sandbox/bindings/install.js.map

@@ -1 +1 @@
-{"version":3,"file":"install.js","sourceRoot":"","sources":["../../../src/sandbox/bindings/install.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAE,iBAAiB,EAAsB,MAAM,SAAS,CAAC;AAChE,OAAO,EAAE,qBAAqB,EAAE,MAAM,aAAa,CAAC;AAgBpD;;;;;GAKG;AACH,MAAM,UAAU,eAAe,CAAC,OAAuB,EAAE,IAAiB;IACxE,aAAa,CAAC,OAAO,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;IAClC,iBAAiB,CAAC,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC;IACxD,qBAAqB,CAAC,OAAO,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC;AACjD,CAAC"}
+{"version":3,"file":"install.js","sourceRoot":"","sources":["../../../src/sandbox/bindings/install.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAE,sBAAsB,EAA2B,MAAM,cAAc,CAAC;AAC/E,OAAO,EAAE,qBAAqB,EAAE,MAAM,aAAa,CAAC;AAgBpD;;;;;GAKG;AACH,MAAM,UAAU,eAAe,CAAC,OAAuB,EAAE,IAAiB;IACxE,aAAa,CAAC,OAAO,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;IAClC,sBAAsB,CAAC,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC7D,qBAAqB,CAAC,OAAO,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC;AACjD,CAAC"}

package/dist/sandbox/bindings/kg.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"kg.d.ts","sourceRoot":"","sources":["../../../src/sandbox/bindings/kg.ts"],"names":[],"mappings":"AAAA,OAAO,EAAS,KAAK,cAAc,EAAsB,MAAM,oBAAoB,CAAC;AAGpF,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACzD,OAAO,EAAE,KAAK,QAAQ,EAAc,MAAM,oBAAoB,CAAC;AAC/D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,6BAA6B,CAAC;AAK5D,OAAO,EAAgD,KAAK,YAAY,EAAE,MAAM,YAAY,CAAC;AAI7F;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,UAAU,EAAE,UAAU,CAAC;IACvB,MAAM,EAAE,QAAQ,CAAC;IACjB,KAAK,EAAE,SAAS,GAAG,UAAU,CAAC;IAC9B,QAAQ,EAAE,QAAQ,CAAC;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,YAAY,CAAC,EAAE,YAAY,CAAC;IAC5B,eAAe,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC;CAC7C;AAED;;;;;;;;;GASG;AACH,wBAAgB,iBAAiB,CAC/B,OAAO,EAAE,cAAc,EACvB,WAAW,CAAC,EAAE,aAAa,EAC3B,YAAY,CAAC,EAAE,aAAa,GAC3B,IAAI,CAmCN"}

package/dist/sandbox/bindings/kg.js

@@ -3,6 +3,7 @@ import { nextReader } from '../../db/client.js';
 import { ftsQuery as ftsQueryImpl } from '../../retrieval/fts.js';
 import { vecQuery as vecQueryImpl } from '../../retrieval/vec.js';
 import { rrfFuse } from '../../retrieval/hybrid.js';
+import { pagerank, connectedComponents } from '../../retrieval/graph.js';
 import { writeWikiFile, appendWikiLog, removeWikiFile } from './write.js';
 import { queryGaps } from '../../gaps/detector.js';
 import { errorMessage, marshalJsValue } from '../helpers.js';
@@ -125,6 +126,15 @@ function installScopeBindings(context, s, scopeObj, deps) {
         const opts = (args[0] ?? {});
         return queryGaps(reader, scope, opts);
     });
+    // -- pagerank(opts?) — D40: PageRank scores based on wikilink graph -------
+    attachFn(context, scopeObj, 'pagerank', (args) => {
+        const opts = (args[0] ?? {});
+        return pagerank(reader, scope, opts);
+    });
+    // -- components(opts?) — D40: connected components in the wikilink graph --
+    attachFn(context, scopeObj, 'components', () => {
+        return connectedComponents(reader, scope);
+    });
     // -- write(path, content) ----------------------------------------------
     attachThrowingFn(context, scopeObj, 'write', (args) => {
         if (!deps.wikiRoot || !deps.writeCounter) {

package/dist/sandbox/bindings/kg.js.map

@@ -1 +1 @@
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package/dist/sandbox/bindings/pinakes.d.ts

@@ -0,0 +1,29 @@
+import { type QuickJSContext } from 'quickjs-emscripten';
+import type { Repository } from '../../db/repository.js';
+import { type DbBundle } from '../../db/client.js';
+import type { Embedder } from '../../retrieval/embedder.js';
+import { type WriteCounter } from './write.js';
+/**
+ * Dependencies for installing one scope's bindings in the sandbox.
+ */
+export interface PinakesBindingDeps {
+    repository: Repository;
+    bundle: DbBundle;
+    scope: 'project' | 'personal';
+    embedder: Embedder;
+    wikiRoot?: string;
+    writeCounter?: WriteCounter;
+    queryEmbeddings?: Map<string, Float32Array>;
+}
+/**
+ * Install the `pinakes` global with `pinakes.project.*` and/or `pinakes.personal.*`
+ * bindings plus backward-compat `pinakes.search()` / `pinakes.get()` aliases
+ * and `pinakes.describe()`.
+ *
+ * **Privacy invariant**: if `personalDeps` is undefined, `pinakes.personal`
+ * does NOT exist in the sandbox — not undefined, not null, simply absent.
+ * This is enforced at the dispatcher level (tool handler decides which
+ * deps to pass). The 15-test adversarial suite verifies this.
+ */
+export declare function installPinakesBindings(context: QuickJSContext, projectDeps?: PinakesBindingDeps, personalDeps?: PinakesBindingDeps): void;
+//# sourceMappingURL=pinakes.d.ts.map

package/dist/sandbox/bindings/pinakes.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"pinakes.d.ts","sourceRoot":"","sources":["../../../src/sandbox/bindings/pinakes.ts"],"names":[],"mappings":"AAAA,OAAO,EAAS,KAAK,cAAc,EAAsB,MAAM,oBAAoB,CAAC;AAGpF,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACzD,OAAO,EAAE,KAAK,QAAQ,EAAc,MAAM,oBAAoB,CAAC;AAC/D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,6BAA6B,CAAC;AAK5D,OAAO,EAAgD,KAAK,YAAY,EAAE,MAAM,YAAY,CAAC;AAI7F;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,UAAU,EAAE,UAAU,CAAC;IACvB,MAAM,EAAE,QAAQ,CAAC;IACjB,KAAK,EAAE,SAAS,GAAG,UAAU,CAAC;IAC9B,QAAQ,EAAE,QAAQ,CAAC;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,YAAY,CAAC,EAAE,YAAY,CAAC;IAC5B,eAAe,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC;CAC7C;AAED;;;;;;;;;GASG;AACH,wBAAgB,sBAAsB,CACpC,OAAO,EAAE,cAAc,EACvB,WAAW,CAAC,EAAE,kBAAkB,EAChC,YAAY,CAAC,EAAE,kBAAkB,GAChC,IAAI,CAmCN"}

package/dist/sandbox/bindings/pinakes.js

@@ -0,0 +1,333 @@
+import { Scope } from 'quickjs-emscripten';
+import { nextReader } from '../../db/client.js';
+import { ftsQuery as ftsQueryImpl } from '../../retrieval/fts.js';
+import { vecQuery as vecQueryImpl } from '../../retrieval/vec.js';
+import { rrfFuse } from '../../retrieval/hybrid.js';
+import { pagerank, connectedComponents } from '../../retrieval/graph.js';
+import { writeWikiFile, appendWikiLog, removeWikiFile } from './write.js';
+import { queryGaps } from '../../gaps/detector.js';
+import { errorMessage, marshalJsValue } from '../helpers.js';
+/**
+ * Install the `pinakes` global with `pinakes.project.*` and/or `pinakes.personal.*`
+ * bindings plus backward-compat `pinakes.search()` / `pinakes.get()` aliases
+ * and `pinakes.describe()`.
+ *
+ * **Privacy invariant**: if `personalDeps` is undefined, `pinakes.personal`
+ * does NOT exist in the sandbox — not undefined, not null, simply absent.
+ * This is enforced at the dispatcher level (tool handler decides which
+ * deps to pass). The 15-test adversarial suite verifies this.
+ */
+export function installPinakesBindings(context, projectDeps, personalDeps) {
+    Scope.withScope((s) => {
+        const pinakesObj = s.manage(context.newObject());
+        // Install project namespace if deps provided
+        if (projectDeps) {
+            const projectObj = s.manage(context.newObject());
+            installScopeBindings(context, s, projectObj, projectDeps);
+            context.setProp(pinakesObj, 'project', projectObj);
+            // Backward-compat aliases route to project scope
+            installBackwardCompat(context, pinakesObj, projectDeps);
+        }
+        // Install personal namespace if deps provided (privacy invariant)
+        if (personalDeps) {
+            const personalObj = s.manage(context.newObject());
+            installScopeBindings(context, s, personalObj, personalDeps);
+            context.setProp(pinakesObj, 'personal', personalObj);
+        }
+        // pinakes.describe() — returns metadata for available scopes only
+        attachFn(context, pinakesObj, 'describe', () => {
+            const result = {};
+            if (projectDeps) {
+                result.project = describeScope(projectDeps);
+            }
+            if (personalDeps) {
+                result.personal = describeScope(personalDeps);
+            }
+            return result;
+        });
+        context.setProp(context.global, 'pinakes', pinakesObj);
+    });
+}
+/**
+ * Install all bindings for one scope onto a QuickJS object.
+ * Called once for project, once for personal (if both are requested).
+ */
+function installScopeBindings(context, s, scopeObj, deps) {
+    const { bundle, scope } = deps;
+    const reader = nextReader(bundle);
+    const logObj = s.manage(context.newObject());
+    // -- fts(query, opts?) -------------------------------------------------
+    attachFn(context, scopeObj, 'fts', (args) => {
+        const query = args[0];
+        if (typeof query !== 'string' || !query.trim())
+            return [];
+        const opts = (args[1] ?? {});
+        const limit = Math.min(Math.max(opts.limit ?? 20, 1), 100);
+        return ftsQueryImpl(reader, scope, query, limit);
+    });
+    // -- vec(query, opts?) -------------------------------------------------
+    attachFn(context, scopeObj, 'vec', (args) => {
+        const query = args[0];
+        if (typeof query !== 'string' || !query.trim())
+            return [];
+        const opts = (args[1] ?? {});
+        const limit = Math.min(Math.max(opts.limit ?? 20, 1), 100);
+        const cached = deps.queryEmbeddings?.get(query);
+        if (!cached)
+            return [];
+        return vecQueryImpl(reader, scope, cached, limit);
+    });
+    // -- hybrid(query, opts?) ----------------------------------------------
+    attachFn(context, scopeObj, 'hybrid', (args) => {
+        const query = args[0];
+        if (typeof query !== 'string' || !query.trim())
+            return [];
+        const opts = (args[1] ?? {});
+        const limit = Math.min(Math.max(opts.limit ?? 20, 1), 100);
+        const rrfK = opts.rrf_k ?? 60;
+        const fetchLimit = Math.min(limit * 2, 100);
+        const ftsResults = ftsQueryImpl(reader, scope, query, fetchLimit);
+        const cached = deps.queryEmbeddings?.get(query);
+        const vecResults = cached
+            ? vecQueryImpl(reader, scope, cached, fetchLimit)
+            : [];
+        return rrfFuse(ftsResults, vecResults, rrfK, limit);
+    });
+    // -- get(id) -----------------------------------------------------------
+    attachFn(context, scopeObj, 'get', (args) => {
+        const id = args[0];
+        if (typeof id !== 'string')
+            return null;
+        return nodeGet(reader, scope, id);
+    });
+    // -- index(opts?) — Phase 7.5: browsable table of contents ---------------
+    attachFn(context, scopeObj, 'index', (args) => {
+        const opts = (args[0] ?? {});
+        const limit = Math.min(Math.max(opts.limit ?? 500, 1), 2000);
+        return indexQuery(reader, scope, limit, opts.kind, opts.source_uri);
+    });
+    // -- neighbors(id, opts?) ----------------------------------------------
+    attachFn(context, scopeObj, 'neighbors', (args) => {
+        const id = args[0];
+        if (typeof id !== 'string')
+            return [];
+        const opts = (args[1] ?? {});
+        const depth = Math.min(Math.max(opts.depth ?? 1, 1), 3);
+        return neighborsQuery(reader, scope, id, depth, opts.edge_kinds);
+    });
+    // -- log.recent(n?, opts?) ---------------------------------------------
+    attachFn(context, logObj, 'recent', (args) => {
+        const n = typeof args[0] === 'number' ? Math.min(Math.max(args[0], 1), 100) : 20;
+        const opts = (args[1] ?? {});
+        return logRecent(reader, scope, n, opts.kind);
+    });
+    // -- gaps(opts?) — Phase 6: query pinakes_gaps for concept gaps ---------------
+    attachFn(context, scopeObj, 'gaps', (args) => {
+        const opts = (args[0] ?? {});
+        return queryGaps(reader, scope, opts);
+    });
+    // -- pagerank(opts?) — D40: PageRank scores based on wikilink graph -------
+    attachFn(context, scopeObj, 'pagerank', (args) => {
+        const opts = (args[0] ?? {});
+        return pagerank(reader, scope, opts);
+    });
+    // -- components(opts?) — D40: connected components in the wikilink graph --
+    attachFn(context, scopeObj, 'components', () => {
+        return connectedComponents(reader, scope);
+    });
+    // -- write(path, content) ----------------------------------------------
+    attachThrowingFn(context, scopeObj, 'write', (args) => {
+        if (!deps.wikiRoot || !deps.writeCounter) {
+            throw new Error('write bindings not available (no wikiRoot configured)');
+        }
+        const path = args[0];
+        const content = args[1];
+        if (typeof path !== 'string')
+            throw new Error('write: path must be a string');
+        if (typeof content !== 'string')
+            throw new Error('write: content must be a string');
+        return writeWikiFile(deps.wikiRoot, path, content, deps.writeCounter, scope, bundle.writer);
+    });
+    // -- append(entry) -----------------------------------------------------
+    attachThrowingFn(context, scopeObj, 'append', (args) => {
+        if (!deps.wikiRoot || !deps.writeCounter) {
+            throw new Error('append bindings not available (no wikiRoot configured)');
+        }
+        const entry = args[0];
+        if (typeof entry !== 'string')
+            throw new Error('append: entry must be a string');
+        return appendWikiLog(deps.wikiRoot, entry, deps.writeCounter, scope, bundle.writer);
+    });
+    // -- remove(path) ------------------------------------------------------
+    attachThrowingFn(context, scopeObj, 'remove', (args) => {
+        if (!deps.wikiRoot || !deps.writeCounter) {
+            throw new Error('remove bindings not available (no wikiRoot configured)');
+        }
+        const path = args[0];
+        if (typeof path !== 'string')
+            throw new Error('remove: path must be a string');
+        return removeWikiFile(deps.wikiRoot, path, deps.writeCounter, scope, bundle.writer);
+    });
+    // Wire nesting: scope.log
+    context.setProp(scopeObj, 'log', logObj);
+}
+/**
+ * Install backward-compat `pinakes.search()` and `pinakes.get()` aliases.
+ * Always routes to the project scope.
+ */
+function installBackwardCompat(context, pinakesObj, deps) {
+    const { repository, scope } = deps;
+    attachFn(context, pinakesObj, 'search', (args) => {
+        const query = args[0];
+        if (typeof query !== 'string')
+            return [];
+        return repository.search(query, scope).map((c) => ({
+            id: c.id,
+            text: c.text,
+            source_uri: c.source_uri,
+        }));
+    });
+    attachFn(context, pinakesObj, 'get', (args) => {
+        const id = args[0];
+        if (typeof id !== 'string')
+            return null;
+        const c = repository.get(id, scope);
+        if (!c)
+            return null;
+        return { id: c.id, text: c.text, source_uri: c.source_uri };
+    });
+}
+/**
+ * Return summary metadata for a scope (no content, just counts).
+ */
+function describeScope(deps) {
+    const reader = nextReader(deps.bundle);
+    const chunks = reader
+        .prepare(`SELECT count(*) AS c FROM pinakes_chunks ch JOIN pinakes_nodes n ON ch.node_id = n.id WHERE n.scope = ?`)
+        .get(deps.scope)?.c ?? 0;
+    const nodes = reader
+        .prepare(`SELECT count(*) AS c FROM pinakes_nodes WHERE scope = ?`)
+        .get(deps.scope)?.c ?? 0;
+    return { chunks, nodes };
+}
+// ============================================================================
+// SQL query implementations
+// ============================================================================
+function nodeGet(reader, scope, id) {
+    const row = reader
+        .prepare(`SELECT id, source_uri, section_path, kind, title, content, token_count, confidence
+         FROM pinakes_nodes
+        WHERE id = ? AND scope = ?
+        LIMIT 1`)
+        .get(id, scope);
+    return row ?? null;
+}
+function indexQuery(reader, scope, limit, kind, sourceUri) {
+    let sql = `SELECT id, title, source_uri, section_path, kind, token_count
+     FROM pinakes_nodes
+    WHERE scope = ?`;
+    const params = [scope];
+    if (kind) {
+        sql += ` AND kind = ?`;
+        params.push(kind);
+    }
+    if (sourceUri) {
+        sql += ` AND source_uri = ?`;
+        params.push(sourceUri);
+    }
+    sql += ` ORDER BY source_uri, section_path LIMIT ?`;
+    params.push(limit);
+    return reader.prepare(sql).all(...params);
+}
+function neighborsQuery(reader, scope, id, maxDepth, edgeKinds) {
+    let edgeFilter = '';
+    const params = [id, maxDepth];
+    if (edgeKinds && edgeKinds.length > 0) {
+        const placeholders = edgeKinds.map(() => '?').join(',');
+        edgeFilter = `AND e.edge_kind IN (${placeholders})`;
+        params.push(...edgeKinds);
+    }
+    params.push(id, scope);
+    const sql = `
+    WITH RECURSIVE hops(node_id, depth) AS (
+      VALUES(?, 0)
+      UNION ALL
+      SELECT e.dst_id, h.depth + 1
+        FROM hops h
+        JOIN pinakes_edges e ON e.src_id = h.node_id
+       WHERE h.depth < ? ${edgeFilter}
+    )
+    SELECT DISTINCT n.id, n.source_uri, n.section_path, n.kind, n.title, h.depth
+      FROM hops h
+      JOIN pinakes_nodes n ON n.id = h.node_id
+     WHERE n.id != ? AND n.scope = ?`;
+    return reader.prepare(sql).all(...params);
+}
+function logRecent(reader, scope, n, kind) {
+    let sql;
+    let params;
+    if (kind) {
+        sql = `SELECT id, ts, kind, source_uri, payload
+             FROM pinakes_log
+            WHERE scope = ? AND kind = ?
+            ORDER BY ts DESC
+            LIMIT ?`;
+        params = [scope, kind, n];
+    }
+    else {
+        sql = `SELECT id, ts, kind, source_uri, payload
+             FROM pinakes_log
+            WHERE scope = ?
+            ORDER BY ts DESC
+            LIMIT ?`;
+        params = [scope, n];
+    }
+    const rows = reader.prepare(sql).all(...params);
+    return rows.map((r) => ({
+        id: r.id,
+        ts: r.ts,
+        kind: r.kind,
+        source_uri: r.source_uri,
+        payload: r.payload ? tryParseJson(r.payload) : null,
+    }));
+}
+// ============================================================================
+// Helpers
+// ============================================================================
+function tryParseJson(s) {
+    try {
+        return JSON.parse(s);
+    }
+    catch {
+        return s;
+    }
+}
+function attachFn(context, obj, name, impl) {
+    const fn = context.newFunction(name, (...handles) => {
+        try {
+            const nativeArgs = handles.map((h) => context.dump(h));
+            const result = impl(nativeArgs);
+            return marshalJsValue(context, result);
+        }
+        catch (e) {
+            return context.newError(errorMessage(e));
+        }
+    });
+    context.setProp(obj, name, fn);
+    fn.dispose();
+}
+function attachThrowingFn(context, obj, name, impl) {
+    const fn = context.newFunction(name, (...handles) => {
+        try {
+            const nativeArgs = handles.map((h) => context.dump(h));
+            const result = impl(nativeArgs);
+            return marshalJsValue(context, result);
+        }
+        catch (e) {
+            return { error: context.newError(errorMessage(e)) };
+        }
+    });
+    context.setProp(obj, name, fn);
+    fn.dispose();
+}
+//# sourceMappingURL=pinakes.js.map

package/dist/sandbox/bindings/pinakes.js.map

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package/dist/sandbox/bindings/write.d.ts

@@ -1,5 +1,5 @@
 import type { Database as BetterSqliteDatabase } from 'better-sqlite3';
-/** Mutable counter shared across all write operations in a single kg_execute call. */
+/** Mutable counter shared across all write operations in a single pinakes_execute call. */
 export interface WriteCounter {
     value: number;
 }

package/dist/sandbox/bindings/write.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"write.d.ts","sourceRoot":"","sources":["../../../src/sandbox/bindings/write.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,QAAQ,IAAI,oBAAoB,EAAE,MAAM,gBAAgB,CAAC;AAuBvE,sFAAsF;AACtF,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC;CACf;AAoGD;;;;GAIG;AACH,wBAAgB,aAAa,CAC3B,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,YAAY,EACrB,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,oBAAoB,GAC3B;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAqCjC;AAED;;;;GAIG;AACH,wBAAgB,aAAa,CAC3B,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,YAAY,EACrB,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,oBAAoB,GAC3B;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CA2CjC;AAED;;;;;GAKG;AACH,wBAAgB,cAAc,CAC5B,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,YAAY,EACrB,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,oBAAoB,GAC3B;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,IAAI,CAAA;CAAE,CAgBjC"}
+{"version":3,"file":"write.d.ts","sourceRoot":"","sources":["../../../src/sandbox/bindings/write.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,QAAQ,IAAI,oBAAoB,EAAE,MAAM,gBAAgB,CAAC;AAuBvE,2FAA2F;AAC3F,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC;CACf;AAoGD;;;;GAIG;AACH,wBAAgB,aAAa,CAC3B,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,YAAY,EACrB,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,oBAAoB,GAC3B;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAqCjC;AAED;;;;GAIG;AACH,wBAAgB,aAAa,CAC3B,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,YAAY,EACrB,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,oBAAoB,GAC3B;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CA2CjC;AAED;;;;;GAKG;AACH,wBAAgB,cAAc,CAC5B,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,YAAY,EACrB,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,oBAAoB,GAC3B;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,IAAI,CAAA;CAAE,CAgBjC"}

package/dist/sandbox/bindings/write.js

@@ -4,20 +4,20 @@ import { randomBytes } from 'node:crypto';
 import { toStoredUri } from '../../ingest/manifest.js';
 import { logger } from '../../observability/logger.js';
 /**
- * Write-path bindings for `kg.project.write()`, `kg.project.append()`,
- * and `kg.project.remove()` (CLAUDE.md §Architecture #6, presearch D35).
+ * Write-path bindings for `pinakes.project.write()`, `pinakes.project.append()`,
+ * and `pinakes.project.remove()` (CLAUDE.md §Architecture #6, presearch D35).
  *
  * **Write contract**:
  *   1. Path containment: resolved path must start with `wikiRoot`
  *   2. Extension: only `.md` files
- *   3. Size: max `KG_MAX_WRITE_SIZE` bytes (default 100KB)
- *   4. Rate: max 20 writes per `kg_execute` call
+ *   3. Size: max `PINAKES_MAX_WRITE_SIZE` bytes (default 100KB)
+ *   4. Rate: max 20 writes per `execute` call
  *   5. Atomic: tmp file + rename (never half-written files)
- *   6. Audit: every write appends to `kg_log`
+ *   6. Audit: every write appends to `pinakes_log`
  *
  * Chokidar picks up the written file and triggers re-indexing automatically.
  */
-const MAX_WRITE_SIZE = parseInt(process.env['KG_MAX_WRITE_SIZE'] ?? '102400', 10);
+const MAX_WRITE_SIZE = parseInt(process.env['PINAKES_MAX_WRITE_SIZE'] ?? '102400', 10);
 const MAX_WRITES_PER_CALL = 20;
 // ============================================================================
 // Path sanitization
@@ -75,7 +75,7 @@ function sanitizePath(wikiRoot, rawPath) {
 function checkRateLimit(counter) {
     counter.value++;
     if (counter.value > MAX_WRITES_PER_CALL) {
-        throw new Error(`write rate limit exceeded: max ${MAX_WRITES_PER_CALL} writes per kg_execute call (attempted #${counter.value})`);
+        throw new Error(`write rate limit exceeded: max ${MAX_WRITES_PER_CALL} writes per pinakes_execute call (attempted #${counter.value})`);
     }
 }
 // ============================================================================
@@ -84,12 +84,12 @@ function checkRateLimit(counter) {
 function auditLog(writer, scope, kind, filePath, wikiRoot, payload) {
     try {
         writer
-            .prepare(`INSERT INTO kg_log (ts, scope, kind, source_uri, payload)
+            .prepare(`INSERT INTO pinakes_log (ts, scope, kind, source_uri, payload)
          VALUES (?, ?, ?, ?, ?)`)
             .run(Date.now(), scope, kind, toStoredUri(filePath, wikiRoot, scope), JSON.stringify(payload));
     }
     catch (err) {
-        logger.warn({ err, kind, filePath }, 'failed to append write audit to kg_log');
+        logger.warn({ err, kind, filePath }, 'failed to append write audit to pinakes_log');
     }
 }
 // ============================================================================