@optave/codegraph 3.3.1 → 3.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1303) hide show
  1. package/README.md +31 -28
  2. package/dist/ast-analysis/engine.d.ts +15 -13
  3. package/dist/ast-analysis/engine.d.ts.map +1 -1
  4. package/dist/ast-analysis/engine.js +40 -26
  5. package/dist/ast-analysis/engine.js.map +1 -1
  6. package/dist/ast-analysis/metrics.d.ts +4 -18
  7. package/dist/ast-analysis/metrics.d.ts.map +1 -1
  8. package/dist/ast-analysis/metrics.js.map +1 -1
  9. package/dist/ast-analysis/rules/csharp.d.ts +6 -23
  10. package/dist/ast-analysis/rules/csharp.d.ts.map +1 -1
  11. package/dist/ast-analysis/rules/csharp.js +0 -3
  12. package/dist/ast-analysis/rules/csharp.js.map +1 -1
  13. package/dist/ast-analysis/rules/go.d.ts +6 -23
  14. package/dist/ast-analysis/rules/go.d.ts.map +1 -1
  15. package/dist/ast-analysis/rules/go.js +0 -3
  16. package/dist/ast-analysis/rules/go.js.map +1 -1
  17. package/dist/ast-analysis/rules/index.d.ts +6 -30
  18. package/dist/ast-analysis/rules/index.d.ts.map +1 -1
  19. package/dist/ast-analysis/rules/index.js +0 -5
  20. package/dist/ast-analysis/rules/index.js.map +1 -1
  21. package/dist/ast-analysis/rules/java.d.ts +6 -23
  22. package/dist/ast-analysis/rules/java.d.ts.map +1 -1
  23. package/dist/ast-analysis/rules/java.js +0 -3
  24. package/dist/ast-analysis/rules/java.js.map +1 -1
  25. package/dist/ast-analysis/rules/javascript.d.ts +6 -30
  26. package/dist/ast-analysis/rules/javascript.d.ts.map +1 -1
  27. package/dist/ast-analysis/rules/javascript.js +0 -5
  28. package/dist/ast-analysis/rules/javascript.js.map +1 -1
  29. package/dist/ast-analysis/rules/php.d.ts +6 -23
  30. package/dist/ast-analysis/rules/php.d.ts.map +1 -1
  31. package/dist/ast-analysis/rules/php.js +0 -3
  32. package/dist/ast-analysis/rules/php.js.map +1 -1
  33. package/dist/ast-analysis/rules/python.d.ts +6 -23
  34. package/dist/ast-analysis/rules/python.d.ts.map +1 -1
  35. package/dist/ast-analysis/rules/python.js +0 -3
  36. package/dist/ast-analysis/rules/python.js.map +1 -1
  37. package/dist/ast-analysis/rules/ruby.d.ts +6 -23
  38. package/dist/ast-analysis/rules/ruby.d.ts.map +1 -1
  39. package/dist/ast-analysis/rules/ruby.js +0 -3
  40. package/dist/ast-analysis/rules/ruby.js.map +1 -1
  41. package/dist/ast-analysis/rules/rust.d.ts +6 -23
  42. package/dist/ast-analysis/rules/rust.d.ts.map +1 -1
  43. package/dist/ast-analysis/rules/rust.js +0 -3
  44. package/dist/ast-analysis/rules/rust.js.map +1 -1
  45. package/dist/ast-analysis/shared.d.ts +11 -105
  46. package/dist/ast-analysis/shared.d.ts.map +1 -1
  47. package/dist/ast-analysis/shared.js +1 -27
  48. package/dist/ast-analysis/shared.js.map +1 -1
  49. package/dist/ast-analysis/visitor-utils.d.ts +36 -11
  50. package/dist/ast-analysis/visitor-utils.d.ts.map +1 -1
  51. package/dist/ast-analysis/visitor-utils.js.map +1 -1
  52. package/dist/ast-analysis/visitor.d.ts +2 -94
  53. package/dist/ast-analysis/visitor.d.ts.map +1 -1
  54. package/dist/ast-analysis/visitor.js +0 -16
  55. package/dist/ast-analysis/visitor.js.map +1 -1
  56. package/dist/ast-analysis/visitors/ast-store-visitor.d.ts +2 -10
  57. package/dist/ast-analysis/visitors/ast-store-visitor.d.ts.map +1 -1
  58. package/dist/ast-analysis/visitors/ast-store-visitor.js +10 -20
  59. package/dist/ast-analysis/visitors/ast-store-visitor.js.map +1 -1
  60. package/dist/ast-analysis/visitors/cfg-visitor.d.ts +4 -7
  61. package/dist/ast-analysis/visitors/cfg-visitor.d.ts.map +1 -1
  62. package/dist/ast-analysis/visitors/cfg-visitor.js +20 -65
  63. package/dist/ast-analysis/visitors/cfg-visitor.js.map +1 -1
  64. package/dist/ast-analysis/visitors/complexity-visitor.d.ts +6 -15
  65. package/dist/ast-analysis/visitors/complexity-visitor.d.ts.map +1 -1
  66. package/dist/ast-analysis/visitors/complexity-visitor.js +6 -41
  67. package/dist/ast-analysis/visitors/complexity-visitor.js.map +1 -1
  68. package/dist/ast-analysis/visitors/dataflow-visitor.d.ts +4 -7
  69. package/dist/ast-analysis/visitors/dataflow-visitor.d.ts.map +1 -1
  70. package/dist/ast-analysis/visitors/dataflow-visitor.js +19 -33
  71. package/dist/ast-analysis/visitors/dataflow-visitor.js.map +1 -1
  72. package/dist/cli/commands/ast.d.ts +2 -8
  73. package/dist/cli/commands/ast.d.ts.map +1 -1
  74. package/dist/cli/commands/ast.js.map +1 -1
  75. package/dist/cli/commands/audit.d.ts +2 -8
  76. package/dist/cli/commands/audit.d.ts.map +1 -1
  77. package/dist/cli/commands/audit.js.map +1 -1
  78. package/dist/cli/commands/batch.d.ts +2 -8
  79. package/dist/cli/commands/batch.d.ts.map +1 -1
  80. package/dist/cli/commands/batch.js +9 -3
  81. package/dist/cli/commands/batch.js.map +1 -1
  82. package/dist/cli/commands/branch-compare.d.ts +2 -6
  83. package/dist/cli/commands/branch-compare.d.ts.map +1 -1
  84. package/dist/cli/commands/branch-compare.js +1 -1
  85. package/dist/cli/commands/branch-compare.js.map +1 -1
  86. package/dist/cli/commands/brief.d.ts +2 -6
  87. package/dist/cli/commands/brief.d.ts.map +1 -1
  88. package/dist/cli/commands/brief.js.map +1 -1
  89. package/dist/cli/commands/build.d.ts +2 -6
  90. package/dist/cli/commands/build.d.ts.map +1 -1
  91. package/dist/cli/commands/build.js +2 -2
  92. package/dist/cli/commands/build.js.map +1 -1
  93. package/dist/cli/commands/cfg.d.ts +2 -9
  94. package/dist/cli/commands/cfg.d.ts.map +1 -1
  95. package/dist/cli/commands/cfg.js.map +1 -1
  96. package/dist/cli/commands/check.d.ts +2 -7
  97. package/dist/cli/commands/check.d.ts.map +1 -1
  98. package/dist/cli/commands/check.js.map +1 -1
  99. package/dist/cli/commands/children.d.ts +2 -8
  100. package/dist/cli/commands/children.d.ts.map +1 -1
  101. package/dist/cli/commands/children.js.map +1 -1
  102. package/dist/cli/commands/co-change.d.ts +2 -6
  103. package/dist/cli/commands/co-change.d.ts.map +1 -1
  104. package/dist/cli/commands/co-change.js +9 -5
  105. package/dist/cli/commands/co-change.js.map +1 -1
  106. package/dist/cli/commands/communities.d.ts +2 -7
  107. package/dist/cli/commands/communities.d.ts.map +1 -1
  108. package/dist/cli/commands/communities.js.map +1 -1
  109. package/dist/cli/commands/complexity.d.ts +2 -8
  110. package/dist/cli/commands/complexity.d.ts.map +1 -1
  111. package/dist/cli/commands/complexity.js.map +1 -1
  112. package/dist/cli/commands/context.d.ts +2 -9
  113. package/dist/cli/commands/context.d.ts.map +1 -1
  114. package/dist/cli/commands/context.js.map +1 -1
  115. package/dist/cli/commands/cycles.d.ts +2 -6
  116. package/dist/cli/commands/cycles.d.ts.map +1 -1
  117. package/dist/cli/commands/cycles.js.map +1 -1
  118. package/dist/cli/commands/dataflow.d.ts +2 -9
  119. package/dist/cli/commands/dataflow.d.ts.map +1 -1
  120. package/dist/cli/commands/dataflow.js.map +1 -1
  121. package/dist/cli/commands/deps.d.ts +2 -7
  122. package/dist/cli/commands/deps.d.ts.map +1 -1
  123. package/dist/cli/commands/deps.js.map +1 -1
  124. package/dist/cli/commands/diff-impact.d.ts +2 -6
  125. package/dist/cli/commands/diff-impact.d.ts.map +1 -1
  126. package/dist/cli/commands/diff-impact.js.map +1 -1
  127. package/dist/cli/commands/embed.d.ts +2 -7
  128. package/dist/cli/commands/embed.d.ts.map +1 -1
  129. package/dist/cli/commands/embed.js +2 -1
  130. package/dist/cli/commands/embed.js.map +1 -1
  131. package/dist/cli/commands/export.d.ts +2 -6
  132. package/dist/cli/commands/export.d.ts.map +1 -1
  133. package/dist/cli/commands/export.js.map +1 -1
  134. package/dist/cli/commands/exports.d.ts +2 -7
  135. package/dist/cli/commands/exports.d.ts.map +1 -1
  136. package/dist/cli/commands/exports.js.map +1 -1
  137. package/dist/cli/commands/flow.d.ts +2 -9
  138. package/dist/cli/commands/flow.d.ts.map +1 -1
  139. package/dist/cli/commands/flow.js.map +1 -1
  140. package/dist/cli/commands/fn-impact.d.ts +2 -9
  141. package/dist/cli/commands/fn-impact.d.ts.map +1 -1
  142. package/dist/cli/commands/fn-impact.js.map +1 -1
  143. package/dist/cli/commands/impact.d.ts +2 -6
  144. package/dist/cli/commands/impact.d.ts.map +1 -1
  145. package/dist/cli/commands/impact.js.map +1 -1
  146. package/dist/cli/commands/implementations.d.ts +2 -9
  147. package/dist/cli/commands/implementations.d.ts.map +1 -1
  148. package/dist/cli/commands/implementations.js.map +1 -1
  149. package/dist/cli/commands/info.d.ts +2 -5
  150. package/dist/cli/commands/info.d.ts.map +1 -1
  151. package/dist/cli/commands/info.js +2 -1
  152. package/dist/cli/commands/info.js.map +1 -1
  153. package/dist/cli/commands/interfaces.d.ts +2 -9
  154. package/dist/cli/commands/interfaces.d.ts.map +1 -1
  155. package/dist/cli/commands/interfaces.js.map +1 -1
  156. package/dist/cli/commands/map.d.ts +2 -6
  157. package/dist/cli/commands/map.d.ts.map +1 -1
  158. package/dist/cli/commands/map.js.map +1 -1
  159. package/dist/cli/commands/mcp.d.ts +2 -6
  160. package/dist/cli/commands/mcp.d.ts.map +1 -1
  161. package/dist/cli/commands/mcp.js +4 -5
  162. package/dist/cli/commands/mcp.js.map +1 -1
  163. package/dist/cli/commands/models.d.ts +2 -5
  164. package/dist/cli/commands/models.d.ts.map +1 -1
  165. package/dist/cli/commands/models.js +5 -3
  166. package/dist/cli/commands/models.js.map +1 -1
  167. package/dist/cli/commands/owners.d.ts +2 -7
  168. package/dist/cli/commands/owners.d.ts.map +1 -1
  169. package/dist/cli/commands/owners.js.map +1 -1
  170. package/dist/cli/commands/path.d.ts +2 -7
  171. package/dist/cli/commands/path.d.ts.map +1 -1
  172. package/dist/cli/commands/path.js.map +1 -1
  173. package/dist/cli/commands/plot.d.ts +2 -6
  174. package/dist/cli/commands/plot.d.ts.map +1 -1
  175. package/dist/cli/commands/plot.js +3 -1
  176. package/dist/cli/commands/plot.js.map +1 -1
  177. package/dist/cli/commands/query.d.ts +2 -9
  178. package/dist/cli/commands/query.d.ts.map +1 -1
  179. package/dist/cli/commands/query.js.map +1 -1
  180. package/dist/cli/commands/registry.d.ts +2 -15
  181. package/dist/cli/commands/registry.d.ts.map +1 -1
  182. package/dist/cli/commands/registry.js.map +1 -1
  183. package/dist/cli/commands/roles.d.ts +2 -8
  184. package/dist/cli/commands/roles.d.ts.map +1 -1
  185. package/dist/cli/commands/roles.js.map +1 -1
  186. package/dist/cli/commands/search.d.ts +2 -8
  187. package/dist/cli/commands/search.d.ts.map +1 -1
  188. package/dist/cli/commands/search.js +1 -5
  189. package/dist/cli/commands/search.js.map +1 -1
  190. package/dist/cli/commands/sequence.d.ts +2 -9
  191. package/dist/cli/commands/sequence.d.ts.map +1 -1
  192. package/dist/cli/commands/sequence.js.map +1 -1
  193. package/dist/cli/commands/snapshot.d.ts +2 -10
  194. package/dist/cli/commands/snapshot.d.ts.map +1 -1
  195. package/dist/cli/commands/snapshot.js.map +1 -1
  196. package/dist/cli/commands/stats.d.ts +2 -6
  197. package/dist/cli/commands/stats.d.ts.map +1 -1
  198. package/dist/cli/commands/stats.js.map +1 -1
  199. package/dist/cli/commands/structure.d.ts +2 -6
  200. package/dist/cli/commands/structure.d.ts.map +1 -1
  201. package/dist/cli/commands/structure.js.map +1 -1
  202. package/dist/cli/commands/triage.d.ts +2 -7
  203. package/dist/cli/commands/triage.d.ts.map +1 -1
  204. package/dist/cli/commands/triage.js.map +1 -1
  205. package/dist/cli/commands/watch.d.ts +2 -5
  206. package/dist/cli/commands/watch.d.ts.map +1 -1
  207. package/dist/cli/commands/watch.js +1 -1
  208. package/dist/cli/commands/watch.js.map +1 -1
  209. package/dist/cli/commands/where.d.ts +2 -8
  210. package/dist/cli/commands/where.d.ts.map +1 -1
  211. package/dist/cli/commands/where.js +1 -1
  212. package/dist/cli/commands/where.js.map +1 -1
  213. package/dist/cli/index.d.ts +8 -17
  214. package/dist/cli/index.d.ts.map +1 -1
  215. package/dist/cli/index.js +27 -7
  216. package/dist/cli/index.js.map +1 -1
  217. package/dist/cli/shared/open-graph.d.ts +4 -7
  218. package/dist/cli/shared/open-graph.d.ts.map +1 -1
  219. package/dist/cli/shared/open-graph.js +0 -4
  220. package/dist/cli/shared/open-graph.js.map +1 -1
  221. package/dist/cli/shared/options.d.ts +8 -15
  222. package/dist/cli/shared/options.d.ts.map +1 -1
  223. package/dist/cli/shared/options.js +0 -2
  224. package/dist/cli/shared/options.js.map +1 -1
  225. package/dist/cli/shared/output.d.ts +1 -1
  226. package/dist/cli/shared/output.d.ts.map +1 -1
  227. package/dist/cli/shared/output.js.map +1 -1
  228. package/dist/cli/types.d.ts +30 -0
  229. package/dist/cli/types.d.ts.map +1 -0
  230. package/dist/cli/types.js +2 -0
  231. package/dist/cli/types.js.map +1 -0
  232. package/dist/cli.d.ts.map +1 -1
  233. package/dist/cli.js +2 -1
  234. package/dist/cli.js.map +1 -1
  235. package/dist/db/connection.d.ts +15 -19
  236. package/dist/db/connection.d.ts.map +1 -1
  237. package/dist/db/connection.js +2 -10
  238. package/dist/db/connection.js.map +1 -1
  239. package/dist/db/index.d.ts +5 -4
  240. package/dist/db/index.d.ts.map +1 -1
  241. package/dist/db/index.js +1 -1
  242. package/dist/db/index.js.map +1 -1
  243. package/dist/db/migrations.d.ts +8 -5
  244. package/dist/db/migrations.d.ts.map +1 -1
  245. package/dist/db/migrations.js +6 -3
  246. package/dist/db/migrations.js.map +1 -1
  247. package/dist/db/query-builder.d.ts +28 -46
  248. package/dist/db/query-builder.d.ts.map +1 -1
  249. package/dist/db/query-builder.js +2 -21
  250. package/dist/db/query-builder.js.map +1 -1
  251. package/dist/db/repository/base.d.ts +38 -101
  252. package/dist/db/repository/base.d.ts.map +1 -1
  253. package/dist/db/repository/base.js +6 -38
  254. package/dist/db/repository/base.js.map +1 -1
  255. package/dist/db/repository/build-stmts.d.ts +7 -16
  256. package/dist/db/repository/build-stmts.d.ts.map +1 -1
  257. package/dist/db/repository/build-stmts.js +0 -17
  258. package/dist/db/repository/build-stmts.js.map +1 -1
  259. package/dist/db/repository/cached-stmt.d.ts +2 -6
  260. package/dist/db/repository/cached-stmt.d.ts.map +1 -1
  261. package/dist/db/repository/cached-stmt.js +0 -5
  262. package/dist/db/repository/cached-stmt.js.map +1 -1
  263. package/dist/db/repository/cfg.d.ts +21 -14
  264. package/dist/db/repository/cfg.d.ts.map +1 -1
  265. package/dist/db/repository/cfg.js +0 -11
  266. package/dist/db/repository/cfg.js.map +1 -1
  267. package/dist/db/repository/cochange.d.ts +4 -10
  268. package/dist/db/repository/cochange.d.ts.map +1 -1
  269. package/dist/db/repository/cochange.js +0 -7
  270. package/dist/db/repository/cochange.js.map +1 -1
  271. package/dist/db/repository/complexity.d.ts +2 -10
  272. package/dist/db/repository/complexity.d.ts.map +1 -1
  273. package/dist/db/repository/complexity.js +0 -3
  274. package/dist/db/repository/complexity.js.map +1 -1
  275. package/dist/db/repository/dataflow.d.ts +2 -3
  276. package/dist/db/repository/dataflow.d.ts.map +1 -1
  277. package/dist/db/repository/dataflow.js +2 -3
  278. package/dist/db/repository/dataflow.js.map +1 -1
  279. package/dist/db/repository/edges.d.ts +25 -132
  280. package/dist/db/repository/edges.d.ts.map +1 -1
  281. package/dist/db/repository/edges.js +2 -58
  282. package/dist/db/repository/edges.js.map +1 -1
  283. package/dist/db/repository/embeddings.d.ts +4 -10
  284. package/dist/db/repository/embeddings.d.ts.map +1 -1
  285. package/dist/db/repository/embeddings.js +1 -8
  286. package/dist/db/repository/embeddings.js.map +1 -1
  287. package/dist/db/repository/graph-read.d.ts +5 -28
  288. package/dist/db/repository/graph-read.d.ts.map +1 -1
  289. package/dist/db/repository/graph-read.js +0 -8
  290. package/dist/db/repository/graph-read.js.map +1 -1
  291. package/dist/db/repository/in-memory-repository.d.ts +73 -141
  292. package/dist/db/repository/in-memory-repository.d.ts.map +1 -1
  293. package/dist/db/repository/in-memory-repository.js +28 -20
  294. package/dist/db/repository/in-memory-repository.js.map +1 -1
  295. package/dist/db/repository/index.d.ts +13 -13
  296. package/dist/db/repository/index.d.ts.map +1 -1
  297. package/dist/db/repository/index.js +1 -1
  298. package/dist/db/repository/index.js.map +1 -1
  299. package/dist/db/repository/nodes.d.ts +40 -105
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  301. package/dist/db/repository/nodes.js +29 -74
  302. package/dist/db/repository/nodes.js.map +1 -1
  303. package/dist/db/repository/sqlite-repository.d.ts +48 -93
  304. package/dist/db/repository/sqlite-repository.d.ts.map +1 -1
  305. package/dist/db/repository/sqlite-repository.js +7 -2
  306. package/dist/db/repository/sqlite-repository.js.map +1 -1
  307. package/dist/domain/analysis/brief.d.ts +16 -7
  308. package/dist/domain/analysis/brief.d.ts.map +1 -1
  309. package/dist/domain/analysis/brief.js +3 -8
  310. package/dist/domain/analysis/brief.js.map +1 -1
  311. package/dist/domain/analysis/context.d.ts +240 -2
  312. package/dist/domain/analysis/context.d.ts.map +1 -1
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  315. package/dist/domain/analysis/dependencies.d.ts +113 -37
  316. package/dist/domain/analysis/dependencies.d.ts.map +1 -1
  317. package/dist/domain/analysis/dependencies.js +20 -27
  318. package/dist/domain/analysis/dependencies.js.map +1 -1
  319. package/dist/domain/analysis/exports.d.ts +7 -1
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  321. package/dist/domain/analysis/exports.js +48 -33
  322. package/dist/domain/analysis/exports.js.map +1 -1
  323. package/dist/domain/analysis/impact.d.ts +128 -16
  324. package/dist/domain/analysis/impact.d.ts.map +1 -1
  325. package/dist/domain/analysis/impact.js +14 -54
  326. package/dist/domain/analysis/impact.js.map +1 -1
  327. package/dist/domain/analysis/implementations.d.ts +28 -28
  328. package/dist/domain/analysis/implementations.d.ts.map +1 -1
  329. package/dist/domain/analysis/implementations.js +0 -10
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  331. package/dist/domain/analysis/module-map.d.ts +44 -24
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  333. package/dist/domain/analysis/module-map.js +19 -7
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  335. package/dist/domain/analysis/roles.d.ts +13 -1
  336. package/dist/domain/analysis/roles.d.ts.map +1 -1
  337. package/dist/domain/analysis/roles.js +10 -2
  338. package/dist/domain/analysis/roles.js.map +1 -1
  339. package/dist/domain/analysis/symbol-lookup.d.ts +120 -7
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  341. package/dist/domain/analysis/symbol-lookup.js +11 -7
  342. package/dist/domain/analysis/symbol-lookup.js.map +1 -1
  343. package/dist/domain/graph/builder/context.d.ts +32 -67
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  345. package/dist/domain/graph/builder/context.js +0 -36
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  347. package/dist/domain/graph/builder/helpers.d.ts +14 -14
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  1039. package/src/cli/commands/{diff-impact.js → diff-impact.ts} +3 -2
  1040. package/src/cli/commands/{embed.js → embed.ts} +6 -4
  1041. package/src/cli/commands/{export.js → export.ts} +8 -7
  1042. package/src/cli/commands/{exports.js → exports.ts} +3 -2
  1043. package/src/cli/commands/{flow.js → flow.ts} +4 -3
  1044. package/src/cli/commands/{fn-impact.js → fn-impact.ts} +5 -4
  1045. package/src/cli/commands/{impact.js → impact.ts} +3 -2
  1046. package/src/cli/commands/{implementations.js → implementations.ts} +4 -3
  1047. package/src/cli/commands/{info.js → info.ts} +6 -3
  1048. package/src/cli/commands/{interfaces.js → interfaces.ts} +4 -3
  1049. package/src/cli/commands/{map.js → map.ts} +3 -2
  1050. package/src/cli/commands/{mcp.js → mcp.ts} +8 -7
  1051. package/src/cli/commands/models.ts +29 -0
  1052. package/src/cli/commands/{owners.js → owners.ts} +3 -2
  1053. package/src/cli/commands/{path.js → path.ts} +6 -5
  1054. package/src/cli/commands/{plot.js → plot.ts} +35 -14
  1055. package/src/cli/commands/{query.js → query.ts} +8 -7
  1056. package/src/cli/commands/{registry.js → registry.ts} +12 -6
  1057. package/src/cli/commands/{roles.js → roles.ts} +3 -2
  1058. package/src/cli/commands/{search.js → search.ts} +12 -15
  1059. package/src/cli/commands/{sequence.js → sequence.ts} +5 -4
  1060. package/src/cli/commands/{snapshot.js → snapshot.ts} +5 -4
  1061. package/src/cli/commands/{stats.js → stats.ts} +2 -1
  1062. package/src/cli/commands/{structure.js → structure.ts} +4 -2
  1063. package/src/cli/commands/{triage.js → triage.ts} +14 -13
  1064. package/src/cli/commands/{watch.js → watch.ts} +3 -2
  1065. package/src/cli/commands/{where.js → where.ts} +3 -2
  1066. package/src/cli/{index.js → index.ts} +40 -15
  1067. package/src/cli/shared/{open-graph.js → open-graph.ts} +5 -5
  1068. package/src/cli/shared/{options.js → options.ts} +6 -6
  1069. package/src/cli/types.ts +33 -0
  1070. package/src/{cli.js → cli.ts} +3 -2
  1071. package/src/db/{connection.js → connection.ts} +46 -37
  1072. package/src/db/{index.js → index.ts} +4 -0
  1073. package/src/db/{migrations.js → migrations.ts} +33 -11
  1074. package/src/db/{query-builder.js → query-builder.ts} +50 -65
  1075. package/src/db/repository/base.ts +192 -0
  1076. package/src/db/repository/{build-stmts.js → build-stmts.ts} +28 -22
  1077. package/src/db/repository/{cached-stmt.js → cached-stmt.ts} +8 -7
  1078. package/src/db/repository/{cfg.js → cfg.ts} +27 -18
  1079. package/src/db/repository/{cochange.js → cochange.ts} +8 -14
  1080. package/src/db/repository/{complexity.js → complexity.ts} +6 -5
  1081. package/src/db/repository/dataflow.ts +19 -0
  1082. package/src/db/repository/{edges.js → edges.ts} +57 -95
  1083. package/src/db/repository/{embeddings.js → embeddings.ts} +10 -14
  1084. package/src/db/repository/{graph-read.js → graph-read.ts} +17 -17
  1085. package/src/db/repository/{in-memory-repository.js → in-memory-repository.ts} +155 -93
  1086. package/src/db/repository/{index.js → index.ts} +2 -0
  1087. package/src/db/repository/{nodes.js → nodes.ts} +120 -106
  1088. package/src/db/repository/{sqlite-repository.js → sqlite-repository.ts} +71 -42
  1089. package/src/domain/analysis/{brief.js → brief.ts} +34 -19
  1090. package/src/domain/analysis/{context.js → context.ts} +179 -79
  1091. package/src/domain/analysis/{dependencies.js → dependencies.ts} +149 -61
  1092. package/src/domain/analysis/{exports.js → exports.ts} +101 -54
  1093. package/src/domain/analysis/{impact.js → impact.ts} +178 -132
  1094. package/src/domain/analysis/{implementations.js → implementations.ts} +13 -14
  1095. package/src/domain/analysis/{module-map.js → module-map.ts} +128 -61
  1096. package/src/domain/analysis/{roles.js → roles.ts} +24 -6
  1097. package/src/domain/analysis/{symbol-lookup.js → symbol-lookup.ts} +78 -34
  1098. package/src/domain/graph/builder/context.ts +81 -0
  1099. package/src/domain/graph/builder/helpers.ts +289 -0
  1100. package/src/domain/graph/builder/{incremental.js → incremental.ts} +179 -76
  1101. package/src/domain/graph/builder/{pipeline.js → pipeline.ts} +33 -27
  1102. package/src/domain/graph/builder/stages/{build-edges.js → build-edges.ts} +174 -56
  1103. package/src/domain/graph/builder/stages/{build-structure.js → build-structure.ts} +34 -17
  1104. package/src/domain/graph/builder/stages/{collect-files.js → collect-files.ts} +6 -8
  1105. package/src/domain/graph/builder/stages/{detect-changes.js → detect-changes.ts} +156 -123
  1106. package/src/domain/graph/builder/stages/{finalize.js → finalize.ts} +79 -41
  1107. package/src/domain/graph/builder/stages/{insert-nodes.js → insert-nodes.ts} +102 -47
  1108. package/src/domain/graph/builder/stages/{parse-files.js → parse-files.ts} +2 -4
  1109. package/src/domain/graph/builder/stages/{resolve-imports.js → resolve-imports.ts} +26 -39
  1110. package/src/domain/graph/builder/stages/{run-analyses.js → run-analyses.ts} +10 -7
  1111. package/src/domain/graph/{change-journal.js → change-journal.ts} +48 -37
  1112. package/src/domain/graph/cycles.ts +66 -0
  1113. package/src/domain/graph/{journal.js → journal.ts} +22 -26
  1114. package/src/domain/graph/{resolve.js → resolve.ts} +125 -35
  1115. package/src/domain/graph/{watcher.js → watcher.ts} +45 -19
  1116. package/src/domain/{parser.js → parser.ts} +151 -105
  1117. package/src/domain/{queries.js → queries.ts} +1 -1
  1118. package/src/domain/search/{generator.js → generator.ts} +28 -21
  1119. package/src/domain/search/{index.js → index.ts} +2 -0
  1120. package/src/domain/search/{models.js → models.ts} +62 -38
  1121. package/src/domain/search/search/{cli-formatter.js → cli-formatter.ts} +22 -21
  1122. package/src/domain/search/search/{filters.js → filters.ts} +7 -19
  1123. package/src/domain/search/search/{hybrid.js → hybrid.ts} +69 -25
  1124. package/src/domain/search/search/{keyword.js → keyword.ts} +42 -16
  1125. package/src/domain/search/search/{prepare.js → prepare.ts} +34 -13
  1126. package/src/domain/search/search/{semantic.js → semantic.ts} +73 -37
  1127. package/src/domain/search/stores/{fts5.js → fts5.ts} +8 -8
  1128. package/src/domain/search/stores/sqlite-blob.ts +15 -0
  1129. package/src/domain/search/strategies/{source.js → source.ts} +6 -1
  1130. package/src/domain/search/strategies/{structured.js → structured.ts} +12 -7
  1131. package/src/domain/search/strategies/{text-utils.js → text-utils.ts} +9 -11
  1132. package/src/extractors/{csharp.js → csharp.ts} +71 -42
  1133. package/src/extractors/{go.js → go.ts} +105 -30
  1134. package/src/extractors/{hcl.js → hcl.ts} +52 -27
  1135. package/src/extractors/{helpers.js → helpers.ts} +20 -15
  1136. package/src/extractors/{java.js → java.ts} +43 -24
  1137. package/src/extractors/{javascript.js → javascript.ts} +165 -133
  1138. package/src/extractors/{php.js → php.ts} +45 -32
  1139. package/src/extractors/{python.js → python.ts} +63 -36
  1140. package/src/extractors/{ruby.js → ruby.ts} +40 -25
  1141. package/src/extractors/{rust.js → rust.ts} +41 -31
  1142. package/src/features/{ast.js → ast.ts} +117 -72
  1143. package/src/features/{audit.js → audit.ts} +173 -54
  1144. package/src/features/batch.ts +182 -0
  1145. package/src/features/{boundaries.js → boundaries.ts} +101 -116
  1146. package/src/features/{branch-compare.js → branch-compare.ts} +153 -81
  1147. package/src/features/{cfg.js → cfg.ts} +230 -88
  1148. package/src/features/{check.js → check.ts} +143 -70
  1149. package/src/features/{cochange.js → cochange.ts} +117 -97
  1150. package/src/features/{communities.js → communities.ts} +85 -57
  1151. package/src/features/{complexity.js → complexity.ts} +256 -156
  1152. package/src/features/{dataflow.js → dataflow.ts} +242 -143
  1153. package/src/features/{export.js → export.ts} +164 -52
  1154. package/src/features/{flow.js → flow.ts} +63 -45
  1155. package/src/features/{graph-enrichment.js → graph-enrichment.ts} +138 -49
  1156. package/src/features/{manifesto.js → manifesto.ts} +138 -77
  1157. package/src/features/{owners.js → owners.ts} +88 -73
  1158. package/src/features/{sequence.js → sequence.ts} +114 -65
  1159. package/src/features/shared/{find-nodes.js → find-nodes.ts} +10 -13
  1160. package/src/features/{snapshot.js → snapshot.ts} +28 -47
  1161. package/src/features/{structure.js → structure.ts} +309 -130
  1162. package/src/features/{triage.js → triage.ts} +80 -42
  1163. package/src/graph/algorithms/{bfs.js → bfs.ts} +18 -10
  1164. package/src/graph/algorithms/{centrality.js → centrality.ts} +9 -5
  1165. package/src/graph/algorithms/{index.js → index.ts} +1 -0
  1166. package/src/graph/algorithms/leiden/LICENSE +24 -0
  1167. package/src/graph/algorithms/leiden/adapter.ts +204 -0
  1168. package/src/graph/algorithms/leiden/cpm.ts +77 -0
  1169. package/src/graph/algorithms/leiden/index.ts +185 -0
  1170. package/src/graph/algorithms/leiden/modularity.ts +122 -0
  1171. package/src/graph/algorithms/leiden/optimiser.ts +598 -0
  1172. package/src/graph/algorithms/leiden/partition.ts +479 -0
  1173. package/src/graph/algorithms/leiden/rng.ts +20 -0
  1174. package/src/graph/algorithms/louvain.ts +47 -0
  1175. package/src/graph/algorithms/{shortest-path.js → shortest-path.ts} +9 -10
  1176. package/src/graph/algorithms/{tarjan.js → tarjan.ts} +15 -14
  1177. package/src/graph/builders/{dependency.js → dependency.ts} +43 -17
  1178. package/src/graph/builders/structure.ts +58 -0
  1179. package/src/graph/builders/temporal.ts +51 -0
  1180. package/src/graph/classifiers/{risk.js → risk.ts} +52 -22
  1181. package/src/graph/classifiers/{roles.js → roles.ts} +32 -16
  1182. package/src/graph/{model.js → model.ts} +49 -58
  1183. package/src/index.cjs +1 -1
  1184. package/src/infrastructure/{config.js → config.ts} +82 -54
  1185. package/src/infrastructure/{logger.js → logger.ts} +6 -6
  1186. package/src/infrastructure/{native.js → native.ts} +16 -15
  1187. package/src/infrastructure/{registry.js → registry.ts} +48 -16
  1188. package/src/infrastructure/{test-filter.js → test-filter.ts} +1 -1
  1189. package/src/infrastructure/{update-check.js → update-check.ts} +30 -16
  1190. package/src/mcp/{middleware.js → middleware.ts} +6 -12
  1191. package/src/mcp/server.ts +249 -0
  1192. package/src/mcp/{tool-registry.js → tool-registry.ts} +16 -9
  1193. package/src/mcp/tools/{ast-query.js → ast-query.ts} +12 -1
  1194. package/src/mcp/tools/{audit.js → audit.ts} +14 -2
  1195. package/src/mcp/tools/batch-query.ts +22 -0
  1196. package/src/mcp/tools/{branch-compare.js → branch-compare.ts} +11 -1
  1197. package/src/mcp/tools/brief.ts +15 -0
  1198. package/src/mcp/tools/{cfg.js → cfg.ts} +13 -2
  1199. package/src/mcp/tools/{check.js → check.ts} +20 -3
  1200. package/src/mcp/tools/{co-changes.js → co-changes.ts} +10 -1
  1201. package/src/mcp/tools/code-owners.ts +22 -0
  1202. package/src/mcp/tools/{communities.js → communities.ts} +11 -1
  1203. package/src/mcp/tools/{complexity.js → complexity.ts} +14 -2
  1204. package/src/mcp/tools/{context.js → context.ts} +14 -1
  1205. package/src/mcp/tools/{dataflow.js → dataflow.ts} +15 -3
  1206. package/src/mcp/tools/{diff-impact.js → diff-impact.ts} +12 -1
  1207. package/src/mcp/tools/{execution-flow.js → execution-flow.ts} +13 -1
  1208. package/src/mcp/tools/{export-graph.js → export-graph.ts} +13 -3
  1209. package/src/mcp/tools/{file-deps.js → file-deps.ts} +9 -1
  1210. package/src/mcp/tools/{file-exports.js → file-exports.ts} +10 -1
  1211. package/src/mcp/tools/{find-cycles.js → find-cycles.ts} +5 -1
  1212. package/src/mcp/tools/{fn-impact.js → fn-impact.ts} +12 -1
  1213. package/src/mcp/tools/impact-analysis.ts +15 -0
  1214. package/src/mcp/tools/{implementations.js → implementations.ts} +11 -1
  1215. package/src/mcp/tools/{index.js → index.ts} +11 -3
  1216. package/src/mcp/tools/{interfaces.js → interfaces.ts} +11 -1
  1217. package/src/mcp/tools/{list-functions.js → list-functions.ts} +10 -1
  1218. package/src/mcp/tools/list-repos.ts +17 -0
  1219. package/src/mcp/tools/module-map.ts +13 -0
  1220. package/src/mcp/tools/{node-roles.js → node-roles.ts} +10 -1
  1221. package/src/mcp/tools/path.ts +24 -0
  1222. package/src/mcp/tools/{query.js → query.ts} +19 -2
  1223. package/src/mcp/tools/{semantic-search.js → semantic-search.ts} +13 -4
  1224. package/src/mcp/tools/{sequence.js → sequence.ts} +15 -2
  1225. package/src/mcp/tools/{structure.js → structure.ts} +11 -1
  1226. package/src/mcp/tools/symbol-children.ts +24 -0
  1227. package/src/mcp/tools/{triage.js → triage.ts} +20 -5
  1228. package/src/mcp/tools/{where.js → where.ts} +10 -1
  1229. package/src/presentation/{audit.js → audit.ts} +23 -6
  1230. package/src/presentation/batch.ts +49 -0
  1231. package/src/presentation/{branch-compare.js → branch-compare.ts} +59 -12
  1232. package/src/presentation/{brief.js → brief.ts} +26 -14
  1233. package/src/presentation/{cfg.js → cfg.ts} +37 -5
  1234. package/src/presentation/{check.js → check.ts} +61 -5
  1235. package/src/presentation/{cochange.js → cochange.ts} +30 -10
  1236. package/src/presentation/{colors.js → colors.ts} +8 -3
  1237. package/src/presentation/{communities.js → communities.ts} +45 -5
  1238. package/src/presentation/{complexity.js → complexity.ts} +49 -5
  1239. package/src/presentation/dataflow.ts +173 -0
  1240. package/src/presentation/{export.js → export.ts} +160 -95
  1241. package/src/presentation/{flow.js → flow.ts} +39 -8
  1242. package/src/presentation/{manifesto.js → manifesto.ts} +26 -7
  1243. package/src/presentation/{owners.js → owners.ts} +43 -6
  1244. package/src/presentation/queries-cli/{exports.js → exports.ts} +49 -8
  1245. package/src/presentation/queries-cli/{impact.js → impact.ts} +139 -23
  1246. package/src/presentation/queries-cli/{inspect.js → inspect.ts} +209 -28
  1247. package/src/presentation/queries-cli/{overview.js → overview.ts} +151 -30
  1248. package/src/presentation/queries-cli/{path.js → path.ts} +53 -9
  1249. package/src/presentation/{query.js → query.ts} +0 -4
  1250. package/src/presentation/{result-formatter.js → result-formatter.ts} +44 -48
  1251. package/src/presentation/sequence-renderer.ts +46 -0
  1252. package/src/presentation/{sequence.js → sequence.ts} +16 -5
  1253. package/src/presentation/{structure.js → structure.ts} +62 -5
  1254. package/src/presentation/{table.js → table.ts} +14 -8
  1255. package/src/presentation/{triage.js → triage.ts} +44 -8
  1256. package/src/presentation/{viewer.js → viewer.ts} +96 -54
  1257. package/src/shared/{constants.js → constants.ts} +4 -4
  1258. package/src/shared/{errors.js → errors.ts} +16 -20
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  1261. package/src/shared/{hierarchy.js → hierarchy.ts} +12 -6
  1262. package/src/shared/{kinds.js → kinds.ts} +34 -12
  1263. package/src/shared/{normalize.js → normalize.ts} +37 -10
  1264. package/src/shared/{paginate.js → paginate.ts} +30 -19
  1265. package/src/types.ts +258 -17
  1266. package/src/vendor.d.ts +39 -0
  1267. package/dist/index.cjs.map +0 -1
  1268. package/dist/index.d.cts +0 -3
  1269. package/dist/index.d.cts.map +0 -1
  1270. package/src/cli/commands/models.js +0 -19
  1271. package/src/db/repository/base.js +0 -201
  1272. package/src/db/repository/dataflow.js +0 -17
  1273. package/src/domain/graph/builder/context.js +0 -85
  1274. package/src/domain/graph/builder/helpers.js +0 -218
  1275. package/src/domain/graph/cycles.js +0 -82
  1276. package/src/domain/search/stores/sqlite-blob.js +0 -24
  1277. package/src/features/batch.js +0 -156
  1278. package/src/graph/algorithms/louvain.js +0 -26
  1279. package/src/graph/builders/structure.js +0 -40
  1280. package/src/graph/builders/temporal.js +0 -33
  1281. package/src/mcp/server.js +0 -143
  1282. package/src/mcp/tools/batch-query.js +0 -11
  1283. package/src/mcp/tools/brief.js +0 -8
  1284. package/src/mcp/tools/code-owners.js +0 -12
  1285. package/src/mcp/tools/impact-analysis.js +0 -12
  1286. package/src/mcp/tools/list-repos.js +0 -11
  1287. package/src/mcp/tools/module-map.js +0 -6
  1288. package/src/mcp/tools/path.js +0 -12
  1289. package/src/mcp/tools/symbol-children.js +0 -14
  1290. package/src/presentation/batch.js +0 -26
  1291. package/src/presentation/dataflow.js +0 -110
  1292. package/src/presentation/sequence-renderer.js +0 -43
  1293. /package/src/cli/shared/{output.js → output.ts} +0 -0
  1294. /package/src/domain/graph/{builder.js → builder.ts} +0 -0
  1295. /package/src/extractors/{index.js → index.ts} +0 -0
  1296. /package/src/graph/builders/{index.js → index.ts} +0 -0
  1297. /package/src/graph/classifiers/{index.js → index.ts} +0 -0
  1298. /package/src/graph/{index.js → index.ts} +0 -0
  1299. /package/src/{index.js → index.ts} +0 -0
  1300. /package/src/infrastructure/{result-formatter.js → result-formatter.ts} +0 -0
  1301. /package/src/mcp/{index.js → index.ts} +0 -0
  1302. /package/src/presentation/queries-cli/{index.js → index.ts} +0 -0
  1303. /package/src/presentation/{queries-cli.js → queries-cli.ts} +0 -0
@@ -0,0 +1,81 @@
1
+ /**
2
+ * PipelineContext — shared mutable state threaded through all build stages.
3
+ *
4
+ * Each stage reads what it needs and writes what it produces.
5
+ * This replaces the closure-captured locals in the old monolithic buildGraph().
6
+ */
7
+ import type BetterSqlite3 from 'better-sqlite3';
8
+ import type {
9
+ BuildGraphOpts,
10
+ CodegraphConfig,
11
+ EngineOpts,
12
+ ExtractorOutput,
13
+ FileToParse,
14
+ MetadataUpdate,
15
+ NodeRow,
16
+ ParseChange,
17
+ PathAliases,
18
+ } from '../../../types.js';
19
+
20
+ export class PipelineContext {
21
+ // ── Inputs (set during setup) ──────────────────────────────────────
22
+ rootDir!: string;
23
+ db!: BetterSqlite3.Database;
24
+ dbPath!: string;
25
+ config!: CodegraphConfig;
26
+ opts!: BuildGraphOpts;
27
+ engineOpts!: EngineOpts;
28
+ engineName!: 'native' | 'wasm';
29
+ engineVersion!: string | null;
30
+ aliases!: PathAliases;
31
+ incremental!: boolean;
32
+ forceFullRebuild: boolean = false;
33
+ schemaVersion!: number;
34
+
35
+ // ── File collection (set by collectFiles stage) ────────────────────
36
+ allFiles!: string[];
37
+ discoveredDirs!: Set<string>;
38
+
39
+ // ── Change detection (set by detectChanges stage) ──────────────────
40
+ isFullBuild!: boolean;
41
+ parseChanges!: ParseChange[];
42
+ metadataUpdates!: MetadataUpdate[];
43
+ removed!: string[];
44
+ earlyExit: boolean = false;
45
+
46
+ // ── Parsing (set by parseFiles stage) ──────────────────────────────
47
+ allSymbols!: Map<string, ExtractorOutput>;
48
+ fileSymbols!: Map<string, ExtractorOutput>;
49
+ filesToParse!: FileToParse[];
50
+
51
+ // ── Import resolution (set by resolveImports stage) ────────────────
52
+ batchResolved!: Map<string, string> | null;
53
+ reexportMap!: Map<string, unknown[]>;
54
+ barrelOnlyFiles!: Set<string>;
55
+
56
+ // ── Node lookup (set by insertNodes / buildEdges stages) ───────────
57
+ nodesByName!: Map<string, NodeRow[]>;
58
+ nodesByNameAndFile!: Map<string, NodeRow[]>;
59
+
60
+ // ── Misc state ─────────────────────────────────────────────────────
61
+ hasEmbeddings: boolean = false;
62
+ lineCountMap!: Map<string, number>;
63
+
64
+ // ── Phase timing ───────────────────────────────────────────────────
65
+ timing: {
66
+ setupMs?: number;
67
+ parseMs?: number;
68
+ insertMs?: number;
69
+ resolveMs?: number;
70
+ edgesMs?: number;
71
+ structureMs?: number;
72
+ rolesMs?: number;
73
+ astMs?: number;
74
+ complexityMs?: number;
75
+ cfgMs?: number;
76
+ dataflowMs?: number;
77
+ finalizeMs?: number;
78
+ [key: string]: number | undefined;
79
+ } = {};
80
+ buildStart!: number;
81
+ }
@@ -0,0 +1,289 @@
1
+ /**
2
+ * Builder helper functions — shared utilities used across pipeline stages.
3
+ *
4
+ * Extracted from the monolithic builder.js so stages can import individually.
5
+ */
6
+ import { createHash } from 'node:crypto';
7
+ import fs from 'node:fs';
8
+ import path from 'node:path';
9
+ import type BetterSqlite3 from 'better-sqlite3';
10
+ import { purgeFilesData } from '../../../db/index.js';
11
+ import { warn } from '../../../infrastructure/logger.js';
12
+ import { EXTENSIONS, IGNORE_DIRS } from '../../../shared/constants.js';
13
+ import type { BetterSqlite3Database, CodegraphConfig, PathAliases } from '../../../types.js';
14
+
15
+ export const BUILTIN_RECEIVERS: Set<string> = new Set([
16
+ 'console',
17
+ 'Math',
18
+ 'JSON',
19
+ 'Object',
20
+ 'Array',
21
+ 'String',
22
+ 'Number',
23
+ 'Boolean',
24
+ 'Date',
25
+ 'RegExp',
26
+ 'Map',
27
+ 'Set',
28
+ 'WeakMap',
29
+ 'WeakSet',
30
+ 'Promise',
31
+ 'Symbol',
32
+ 'Error',
33
+ 'TypeError',
34
+ 'RangeError',
35
+ 'Proxy',
36
+ 'Reflect',
37
+ 'Intl',
38
+ 'globalThis',
39
+ 'window',
40
+ 'document',
41
+ 'process',
42
+ 'Buffer',
43
+ 'require',
44
+ ]);
45
+
46
+ /**
47
+ * Recursively collect all source files under `dir`.
48
+ * When `directories` is a Set, also tracks which directories contain files.
49
+ */
50
+ export function collectFiles(
51
+ dir: string,
52
+ files: string[],
53
+ config: Partial<CodegraphConfig>,
54
+ directories: Set<string>,
55
+ _visited?: Set<string>,
56
+ ): { files: string[]; directories: Set<string> };
57
+ export function collectFiles(
58
+ dir: string,
59
+ files?: string[],
60
+ config?: Partial<CodegraphConfig>,
61
+ directories?: null,
62
+ _visited?: Set<string>,
63
+ ): string[];
64
+ export function collectFiles(
65
+ dir: string,
66
+ files: string[] = [],
67
+ config: Partial<CodegraphConfig> = {},
68
+ directories: Set<string> | null = null,
69
+ _visited: Set<string> = new Set(),
70
+ ): string[] | { files: string[]; directories: Set<string> } {
71
+ const trackDirs = directories instanceof Set;
72
+ let hasFiles = false;
73
+
74
+ // Merge config ignoreDirs with defaults
75
+ const extraIgnore = config.ignoreDirs ? new Set(config.ignoreDirs) : null;
76
+
77
+ // Detect symlink loops (before I/O to avoid wasted readdirSync)
78
+ let realDir: string;
79
+ try {
80
+ realDir = fs.realpathSync(dir);
81
+ } catch {
82
+ return trackDirs ? { files, directories: directories as Set<string> } : files;
83
+ }
84
+ if (_visited.has(realDir)) {
85
+ warn(`Symlink loop detected, skipping: ${dir}`);
86
+ return trackDirs ? { files, directories: directories as Set<string> } : files;
87
+ }
88
+ _visited.add(realDir);
89
+
90
+ let entries: fs.Dirent[];
91
+ try {
92
+ entries = fs.readdirSync(dir, { withFileTypes: true });
93
+ } catch (err: unknown) {
94
+ warn(`Cannot read directory ${dir}: ${(err as Error).message}`);
95
+ return trackDirs ? { files, directories: directories as Set<string> } : files;
96
+ }
97
+
98
+ for (const entry of entries) {
99
+ if (entry.name.startsWith('.') && entry.name !== '.') {
100
+ if (IGNORE_DIRS.has(entry.name)) continue;
101
+ if (entry.isDirectory()) continue;
102
+ }
103
+ if (IGNORE_DIRS.has(entry.name)) continue;
104
+ if (extraIgnore?.has(entry.name)) continue;
105
+
106
+ const full = path.join(dir, entry.name);
107
+ if (entry.isDirectory()) {
108
+ if (trackDirs) {
109
+ collectFiles(full, files, config, directories as Set<string>, _visited);
110
+ } else {
111
+ collectFiles(full, files, config, null, _visited);
112
+ }
113
+ } else if (EXTENSIONS.has(path.extname(entry.name))) {
114
+ files.push(full);
115
+ hasFiles = true;
116
+ }
117
+ }
118
+ if (trackDirs && hasFiles) {
119
+ (directories as Set<string>).add(dir);
120
+ }
121
+ return trackDirs ? { files, directories: directories as Set<string> } : files;
122
+ }
123
+
124
+ /**
125
+ * Load path aliases from tsconfig.json / jsconfig.json.
126
+ */
127
+ export function loadPathAliases(rootDir: string): PathAliases {
128
+ const aliases: PathAliases = { baseUrl: null, paths: {} };
129
+ for (const configName of ['tsconfig.json', 'jsconfig.json']) {
130
+ const configPath = path.join(rootDir, configName);
131
+ if (!fs.existsSync(configPath)) continue;
132
+ try {
133
+ const raw = fs
134
+ .readFileSync(configPath, 'utf-8')
135
+ .replace(/\/\/.*$/gm, '')
136
+ .replace(/\/\*[\s\S]*?\*\//g, '')
137
+ .replace(/,\s*([\]}])/g, '$1');
138
+ const config = JSON.parse(raw) as {
139
+ compilerOptions?: { baseUrl?: string; paths?: Record<string, string[]> };
140
+ };
141
+ const opts = config.compilerOptions || {};
142
+ if (opts.baseUrl) aliases.baseUrl = path.resolve(rootDir, opts.baseUrl);
143
+ if (opts.paths) {
144
+ for (const [pattern, targets] of Object.entries(opts.paths)) {
145
+ aliases.paths[pattern] = targets.map((t: string) =>
146
+ path.resolve(aliases.baseUrl || rootDir, t),
147
+ );
148
+ }
149
+ }
150
+ break;
151
+ } catch (err: unknown) {
152
+ warn(`Failed to parse ${configName}: ${(err as Error).message}`);
153
+ }
154
+ }
155
+ return aliases;
156
+ }
157
+
158
+ /**
159
+ * Compute MD5 hash of file contents for incremental builds.
160
+ */
161
+ export function fileHash(content: string): string {
162
+ return createHash('md5').update(content).digest('hex');
163
+ }
164
+
165
+ /**
166
+ * Stat a file, returning { mtimeMs, size } or null on error.
167
+ */
168
+ export function fileStat(filePath: string): { mtimeMs: number; size: number } | null {
169
+ try {
170
+ const s = fs.statSync(filePath);
171
+ return { mtimeMs: s.mtimeMs, size: s.size };
172
+ } catch {
173
+ return null;
174
+ }
175
+ }
176
+
177
+ /**
178
+ * Read a file with retry on transient errors (EBUSY/EACCES/EPERM).
179
+ */
180
+ const TRANSIENT_CODES: Set<string> = new Set(['EBUSY', 'EACCES', 'EPERM']);
181
+ const RETRY_DELAY_MS = 50;
182
+
183
+ export function readFileSafe(filePath: string, retries: number = 2): string {
184
+ for (let attempt = 0; ; attempt++) {
185
+ try {
186
+ return fs.readFileSync(filePath, 'utf-8');
187
+ } catch (err: unknown) {
188
+ if (attempt < retries && TRANSIENT_CODES.has((err as NodeJS.ErrnoException).code ?? '')) {
189
+ const sharedBuf = new SharedArrayBuffer(4);
190
+ Atomics.wait(new Int32Array(sharedBuf), 0, 0, RETRY_DELAY_MS);
191
+ continue;
192
+ }
193
+ throw err;
194
+ }
195
+ }
196
+ }
197
+
198
+ /**
199
+ * Purge all graph data for the specified files.
200
+ */
201
+ export function purgeFilesFromGraph(
202
+ db: BetterSqlite3.Database,
203
+ files: string[],
204
+ options: Record<string, unknown> = {},
205
+ ): void {
206
+ // Double-cast needed: better-sqlite3 types don't declare `open`/`name` properties
207
+ purgeFilesData(db as unknown as BetterSqlite3Database, files, options);
208
+ }
209
+
210
+ /** Batch INSERT chunk size for multi-value INSERTs. */
211
+ const BATCH_CHUNK = 500;
212
+
213
+ // Statement caches keyed by chunk size — avoids recompiling for every batch.
214
+ const nodeStmtCache = new WeakMap<BetterSqlite3.Database, Map<number, BetterSqlite3.Statement>>();
215
+ const edgeStmtCache = new WeakMap<BetterSqlite3.Database, Map<number, BetterSqlite3.Statement>>();
216
+
217
+ function getNodeStmt(db: BetterSqlite3.Database, chunkSize: number): BetterSqlite3.Statement {
218
+ let cache = nodeStmtCache.get(db);
219
+ if (!cache) {
220
+ cache = new Map();
221
+ nodeStmtCache.set(db, cache);
222
+ }
223
+ let stmt = cache.get(chunkSize);
224
+ if (!stmt) {
225
+ const ph = '(?,?,?,?,?,?,?,?,?)';
226
+ stmt = db.prepare(
227
+ 'INSERT OR IGNORE INTO nodes (name,kind,file,line,end_line,parent_id,qualified_name,scope,visibility) VALUES ' +
228
+ Array.from({ length: chunkSize }, () => ph).join(','),
229
+ );
230
+ cache.set(chunkSize, stmt);
231
+ }
232
+ return stmt;
233
+ }
234
+
235
+ function getEdgeStmt(db: BetterSqlite3.Database, chunkSize: number): BetterSqlite3.Statement {
236
+ let cache = edgeStmtCache.get(db);
237
+ if (!cache) {
238
+ cache = new Map();
239
+ edgeStmtCache.set(db, cache);
240
+ }
241
+ let stmt = cache.get(chunkSize);
242
+ if (!stmt) {
243
+ const ph = '(?,?,?,?,?)';
244
+ stmt = db.prepare(
245
+ 'INSERT INTO edges (source_id,target_id,kind,confidence,dynamic) VALUES ' +
246
+ Array.from({ length: chunkSize }, () => ph).join(','),
247
+ );
248
+ cache.set(chunkSize, stmt);
249
+ }
250
+ return stmt;
251
+ }
252
+
253
+ /**
254
+ * Batch-insert node rows via multi-value INSERT statements.
255
+ * Each row: [name, kind, file, line, end_line, parent_id, qualified_name, scope, visibility]
256
+ */
257
+ export function batchInsertNodes(db: BetterSqlite3.Database, rows: unknown[][]): void {
258
+ if (!rows.length) return;
259
+ for (let i = 0; i < rows.length; i += BATCH_CHUNK) {
260
+ const end = Math.min(i + BATCH_CHUNK, rows.length);
261
+ const chunkSize = end - i;
262
+ const stmt = getNodeStmt(db, chunkSize);
263
+ const vals: unknown[] = [];
264
+ for (let j = i; j < end; j++) {
265
+ const r = rows[j] as unknown[];
266
+ vals.push(r[0], r[1], r[2], r[3], r[4], r[5], r[6], r[7], r[8]);
267
+ }
268
+ stmt.run(...vals);
269
+ }
270
+ }
271
+
272
+ /**
273
+ * Batch-insert edge rows via multi-value INSERT statements.
274
+ * Each row: [source_id, target_id, kind, confidence, dynamic]
275
+ */
276
+ export function batchInsertEdges(db: BetterSqlite3.Database, rows: unknown[][]): void {
277
+ if (!rows.length) return;
278
+ for (let i = 0; i < rows.length; i += BATCH_CHUNK) {
279
+ const end = Math.min(i + BATCH_CHUNK, rows.length);
280
+ const chunkSize = end - i;
281
+ const stmt = getEdgeStmt(db, chunkSize);
282
+ const vals: unknown[] = [];
283
+ for (let j = i; j < end; j++) {
284
+ const r = rows[j] as unknown[];
285
+ vals.push(r[0], r[1], r[2], r[3], r[4]);
286
+ }
287
+ stmt.run(...vals);
288
+ }
289
+ }