@optave/codegraph 3.3.1 → 3.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1303) hide show
  1. package/README.md +31 -28
  2. package/dist/ast-analysis/engine.d.ts +15 -13
  3. package/dist/ast-analysis/engine.d.ts.map +1 -1
  4. package/dist/ast-analysis/engine.js +40 -26
  5. package/dist/ast-analysis/engine.js.map +1 -1
  6. package/dist/ast-analysis/metrics.d.ts +4 -18
  7. package/dist/ast-analysis/metrics.d.ts.map +1 -1
  8. package/dist/ast-analysis/metrics.js.map +1 -1
  9. package/dist/ast-analysis/rules/csharp.d.ts +6 -23
  10. package/dist/ast-analysis/rules/csharp.d.ts.map +1 -1
  11. package/dist/ast-analysis/rules/csharp.js +0 -3
  12. package/dist/ast-analysis/rules/csharp.js.map +1 -1
  13. package/dist/ast-analysis/rules/go.d.ts +6 -23
  14. package/dist/ast-analysis/rules/go.d.ts.map +1 -1
  15. package/dist/ast-analysis/rules/go.js +0 -3
  16. package/dist/ast-analysis/rules/go.js.map +1 -1
  17. package/dist/ast-analysis/rules/index.d.ts +6 -30
  18. package/dist/ast-analysis/rules/index.d.ts.map +1 -1
  19. package/dist/ast-analysis/rules/index.js +0 -5
  20. package/dist/ast-analysis/rules/index.js.map +1 -1
  21. package/dist/ast-analysis/rules/java.d.ts +6 -23
  22. package/dist/ast-analysis/rules/java.d.ts.map +1 -1
  23. package/dist/ast-analysis/rules/java.js +0 -3
  24. package/dist/ast-analysis/rules/java.js.map +1 -1
  25. package/dist/ast-analysis/rules/javascript.d.ts +6 -30
  26. package/dist/ast-analysis/rules/javascript.d.ts.map +1 -1
  27. package/dist/ast-analysis/rules/javascript.js +0 -5
  28. package/dist/ast-analysis/rules/javascript.js.map +1 -1
  29. package/dist/ast-analysis/rules/php.d.ts +6 -23
  30. package/dist/ast-analysis/rules/php.d.ts.map +1 -1
  31. package/dist/ast-analysis/rules/php.js +0 -3
  32. package/dist/ast-analysis/rules/php.js.map +1 -1
  33. package/dist/ast-analysis/rules/python.d.ts +6 -23
  34. package/dist/ast-analysis/rules/python.d.ts.map +1 -1
  35. package/dist/ast-analysis/rules/python.js +0 -3
  36. package/dist/ast-analysis/rules/python.js.map +1 -1
  37. package/dist/ast-analysis/rules/ruby.d.ts +6 -23
  38. package/dist/ast-analysis/rules/ruby.d.ts.map +1 -1
  39. package/dist/ast-analysis/rules/ruby.js +0 -3
  40. package/dist/ast-analysis/rules/ruby.js.map +1 -1
  41. package/dist/ast-analysis/rules/rust.d.ts +6 -23
  42. package/dist/ast-analysis/rules/rust.d.ts.map +1 -1
  43. package/dist/ast-analysis/rules/rust.js +0 -3
  44. package/dist/ast-analysis/rules/rust.js.map +1 -1
  45. package/dist/ast-analysis/shared.d.ts +11 -105
  46. package/dist/ast-analysis/shared.d.ts.map +1 -1
  47. package/dist/ast-analysis/shared.js +1 -27
  48. package/dist/ast-analysis/shared.js.map +1 -1
  49. package/dist/ast-analysis/visitor-utils.d.ts +36 -11
  50. package/dist/ast-analysis/visitor-utils.d.ts.map +1 -1
  51. package/dist/ast-analysis/visitor-utils.js.map +1 -1
  52. package/dist/ast-analysis/visitor.d.ts +2 -94
  53. package/dist/ast-analysis/visitor.d.ts.map +1 -1
  54. package/dist/ast-analysis/visitor.js +0 -16
  55. package/dist/ast-analysis/visitor.js.map +1 -1
  56. package/dist/ast-analysis/visitors/ast-store-visitor.d.ts +2 -10
  57. package/dist/ast-analysis/visitors/ast-store-visitor.d.ts.map +1 -1
  58. package/dist/ast-analysis/visitors/ast-store-visitor.js +10 -20
  59. package/dist/ast-analysis/visitors/ast-store-visitor.js.map +1 -1
  60. package/dist/ast-analysis/visitors/cfg-visitor.d.ts +4 -7
  61. package/dist/ast-analysis/visitors/cfg-visitor.d.ts.map +1 -1
  62. package/dist/ast-analysis/visitors/cfg-visitor.js +20 -65
  63. package/dist/ast-analysis/visitors/cfg-visitor.js.map +1 -1
  64. package/dist/ast-analysis/visitors/complexity-visitor.d.ts +6 -15
  65. package/dist/ast-analysis/visitors/complexity-visitor.d.ts.map +1 -1
  66. package/dist/ast-analysis/visitors/complexity-visitor.js +6 -41
  67. package/dist/ast-analysis/visitors/complexity-visitor.js.map +1 -1
  68. package/dist/ast-analysis/visitors/dataflow-visitor.d.ts +4 -7
  69. package/dist/ast-analysis/visitors/dataflow-visitor.d.ts.map +1 -1
  70. package/dist/ast-analysis/visitors/dataflow-visitor.js +19 -33
  71. package/dist/ast-analysis/visitors/dataflow-visitor.js.map +1 -1
  72. package/dist/cli/commands/ast.d.ts +2 -8
  73. package/dist/cli/commands/ast.d.ts.map +1 -1
  74. package/dist/cli/commands/ast.js.map +1 -1
  75. package/dist/cli/commands/audit.d.ts +2 -8
  76. package/dist/cli/commands/audit.d.ts.map +1 -1
  77. package/dist/cli/commands/audit.js.map +1 -1
  78. package/dist/cli/commands/batch.d.ts +2 -8
  79. package/dist/cli/commands/batch.d.ts.map +1 -1
  80. package/dist/cli/commands/batch.js +9 -3
  81. package/dist/cli/commands/batch.js.map +1 -1
  82. package/dist/cli/commands/branch-compare.d.ts +2 -6
  83. package/dist/cli/commands/branch-compare.d.ts.map +1 -1
  84. package/dist/cli/commands/branch-compare.js +1 -1
  85. package/dist/cli/commands/branch-compare.js.map +1 -1
  86. package/dist/cli/commands/brief.d.ts +2 -6
  87. package/dist/cli/commands/brief.d.ts.map +1 -1
  88. package/dist/cli/commands/brief.js.map +1 -1
  89. package/dist/cli/commands/build.d.ts +2 -6
  90. package/dist/cli/commands/build.d.ts.map +1 -1
  91. package/dist/cli/commands/build.js +2 -2
  92. package/dist/cli/commands/build.js.map +1 -1
  93. package/dist/cli/commands/cfg.d.ts +2 -9
  94. package/dist/cli/commands/cfg.d.ts.map +1 -1
  95. package/dist/cli/commands/cfg.js.map +1 -1
  96. package/dist/cli/commands/check.d.ts +2 -7
  97. package/dist/cli/commands/check.d.ts.map +1 -1
  98. package/dist/cli/commands/check.js.map +1 -1
  99. package/dist/cli/commands/children.d.ts +2 -8
  100. package/dist/cli/commands/children.d.ts.map +1 -1
  101. package/dist/cli/commands/children.js.map +1 -1
  102. package/dist/cli/commands/co-change.d.ts +2 -6
  103. package/dist/cli/commands/co-change.d.ts.map +1 -1
  104. package/dist/cli/commands/co-change.js +9 -5
  105. package/dist/cli/commands/co-change.js.map +1 -1
  106. package/dist/cli/commands/communities.d.ts +2 -7
  107. package/dist/cli/commands/communities.d.ts.map +1 -1
  108. package/dist/cli/commands/communities.js.map +1 -1
  109. package/dist/cli/commands/complexity.d.ts +2 -8
  110. package/dist/cli/commands/complexity.d.ts.map +1 -1
  111. package/dist/cli/commands/complexity.js.map +1 -1
  112. package/dist/cli/commands/context.d.ts +2 -9
  113. package/dist/cli/commands/context.d.ts.map +1 -1
  114. package/dist/cli/commands/context.js.map +1 -1
  115. package/dist/cli/commands/cycles.d.ts +2 -6
  116. package/dist/cli/commands/cycles.d.ts.map +1 -1
  117. package/dist/cli/commands/cycles.js.map +1 -1
  118. package/dist/cli/commands/dataflow.d.ts +2 -9
  119. package/dist/cli/commands/dataflow.d.ts.map +1 -1
  120. package/dist/cli/commands/dataflow.js.map +1 -1
  121. package/dist/cli/commands/deps.d.ts +2 -7
  122. package/dist/cli/commands/deps.d.ts.map +1 -1
  123. package/dist/cli/commands/deps.js.map +1 -1
  124. package/dist/cli/commands/diff-impact.d.ts +2 -6
  125. package/dist/cli/commands/diff-impact.d.ts.map +1 -1
  126. package/dist/cli/commands/diff-impact.js.map +1 -1
  127. package/dist/cli/commands/embed.d.ts +2 -7
  128. package/dist/cli/commands/embed.d.ts.map +1 -1
  129. package/dist/cli/commands/embed.js +2 -1
  130. package/dist/cli/commands/embed.js.map +1 -1
  131. package/dist/cli/commands/export.d.ts +2 -6
  132. package/dist/cli/commands/export.d.ts.map +1 -1
  133. package/dist/cli/commands/export.js.map +1 -1
  134. package/dist/cli/commands/exports.d.ts +2 -7
  135. package/dist/cli/commands/exports.d.ts.map +1 -1
  136. package/dist/cli/commands/exports.js.map +1 -1
  137. package/dist/cli/commands/flow.d.ts +2 -9
  138. package/dist/cli/commands/flow.d.ts.map +1 -1
  139. package/dist/cli/commands/flow.js.map +1 -1
  140. package/dist/cli/commands/fn-impact.d.ts +2 -9
  141. package/dist/cli/commands/fn-impact.d.ts.map +1 -1
  142. package/dist/cli/commands/fn-impact.js.map +1 -1
  143. package/dist/cli/commands/impact.d.ts +2 -6
  144. package/dist/cli/commands/impact.d.ts.map +1 -1
  145. package/dist/cli/commands/impact.js.map +1 -1
  146. package/dist/cli/commands/implementations.d.ts +2 -9
  147. package/dist/cli/commands/implementations.d.ts.map +1 -1
  148. package/dist/cli/commands/implementations.js.map +1 -1
  149. package/dist/cli/commands/info.d.ts +2 -5
  150. package/dist/cli/commands/info.d.ts.map +1 -1
  151. package/dist/cli/commands/info.js +2 -1
  152. package/dist/cli/commands/info.js.map +1 -1
  153. package/dist/cli/commands/interfaces.d.ts +2 -9
  154. package/dist/cli/commands/interfaces.d.ts.map +1 -1
  155. package/dist/cli/commands/interfaces.js.map +1 -1
  156. package/dist/cli/commands/map.d.ts +2 -6
  157. package/dist/cli/commands/map.d.ts.map +1 -1
  158. package/dist/cli/commands/map.js.map +1 -1
  159. package/dist/cli/commands/mcp.d.ts +2 -6
  160. package/dist/cli/commands/mcp.d.ts.map +1 -1
  161. package/dist/cli/commands/mcp.js +4 -5
  162. package/dist/cli/commands/mcp.js.map +1 -1
  163. package/dist/cli/commands/models.d.ts +2 -5
  164. package/dist/cli/commands/models.d.ts.map +1 -1
  165. package/dist/cli/commands/models.js +5 -3
  166. package/dist/cli/commands/models.js.map +1 -1
  167. package/dist/cli/commands/owners.d.ts +2 -7
  168. package/dist/cli/commands/owners.d.ts.map +1 -1
  169. package/dist/cli/commands/owners.js.map +1 -1
  170. package/dist/cli/commands/path.d.ts +2 -7
  171. package/dist/cli/commands/path.d.ts.map +1 -1
  172. package/dist/cli/commands/path.js.map +1 -1
  173. package/dist/cli/commands/plot.d.ts +2 -6
  174. package/dist/cli/commands/plot.d.ts.map +1 -1
  175. package/dist/cli/commands/plot.js +3 -1
  176. package/dist/cli/commands/plot.js.map +1 -1
  177. package/dist/cli/commands/query.d.ts +2 -9
  178. package/dist/cli/commands/query.d.ts.map +1 -1
  179. package/dist/cli/commands/query.js.map +1 -1
  180. package/dist/cli/commands/registry.d.ts +2 -15
  181. package/dist/cli/commands/registry.d.ts.map +1 -1
  182. package/dist/cli/commands/registry.js.map +1 -1
  183. package/dist/cli/commands/roles.d.ts +2 -8
  184. package/dist/cli/commands/roles.d.ts.map +1 -1
  185. package/dist/cli/commands/roles.js.map +1 -1
  186. package/dist/cli/commands/search.d.ts +2 -8
  187. package/dist/cli/commands/search.d.ts.map +1 -1
  188. package/dist/cli/commands/search.js +1 -5
  189. package/dist/cli/commands/search.js.map +1 -1
  190. package/dist/cli/commands/sequence.d.ts +2 -9
  191. package/dist/cli/commands/sequence.d.ts.map +1 -1
  192. package/dist/cli/commands/sequence.js.map +1 -1
  193. package/dist/cli/commands/snapshot.d.ts +2 -10
  194. package/dist/cli/commands/snapshot.d.ts.map +1 -1
  195. package/dist/cli/commands/snapshot.js.map +1 -1
  196. package/dist/cli/commands/stats.d.ts +2 -6
  197. package/dist/cli/commands/stats.d.ts.map +1 -1
  198. package/dist/cli/commands/stats.js.map +1 -1
  199. package/dist/cli/commands/structure.d.ts +2 -6
  200. package/dist/cli/commands/structure.d.ts.map +1 -1
  201. package/dist/cli/commands/structure.js.map +1 -1
  202. package/dist/cli/commands/triage.d.ts +2 -7
  203. package/dist/cli/commands/triage.d.ts.map +1 -1
  204. package/dist/cli/commands/triage.js.map +1 -1
  205. package/dist/cli/commands/watch.d.ts +2 -5
  206. package/dist/cli/commands/watch.d.ts.map +1 -1
  207. package/dist/cli/commands/watch.js +1 -1
  208. package/dist/cli/commands/watch.js.map +1 -1
  209. package/dist/cli/commands/where.d.ts +2 -8
  210. package/dist/cli/commands/where.d.ts.map +1 -1
  211. package/dist/cli/commands/where.js +1 -1
  212. package/dist/cli/commands/where.js.map +1 -1
  213. package/dist/cli/index.d.ts +8 -17
  214. package/dist/cli/index.d.ts.map +1 -1
  215. package/dist/cli/index.js +27 -7
  216. package/dist/cli/index.js.map +1 -1
  217. package/dist/cli/shared/open-graph.d.ts +4 -7
  218. package/dist/cli/shared/open-graph.d.ts.map +1 -1
  219. package/dist/cli/shared/open-graph.js +0 -4
  220. package/dist/cli/shared/open-graph.js.map +1 -1
  221. package/dist/cli/shared/options.d.ts +8 -15
  222. package/dist/cli/shared/options.d.ts.map +1 -1
  223. package/dist/cli/shared/options.js +0 -2
  224. package/dist/cli/shared/options.js.map +1 -1
  225. package/dist/cli/shared/output.d.ts +1 -1
  226. package/dist/cli/shared/output.d.ts.map +1 -1
  227. package/dist/cli/shared/output.js.map +1 -1
  228. package/dist/cli/types.d.ts +30 -0
  229. package/dist/cli/types.d.ts.map +1 -0
  230. package/dist/cli/types.js +2 -0
  231. package/dist/cli/types.js.map +1 -0
  232. package/dist/cli.d.ts.map +1 -1
  233. package/dist/cli.js +2 -1
  234. package/dist/cli.js.map +1 -1
  235. package/dist/db/connection.d.ts +15 -19
  236. package/dist/db/connection.d.ts.map +1 -1
  237. package/dist/db/connection.js +2 -10
  238. package/dist/db/connection.js.map +1 -1
  239. package/dist/db/index.d.ts +5 -4
  240. package/dist/db/index.d.ts.map +1 -1
  241. package/dist/db/index.js +1 -1
  242. package/dist/db/index.js.map +1 -1
  243. package/dist/db/migrations.d.ts +8 -5
  244. package/dist/db/migrations.d.ts.map +1 -1
  245. package/dist/db/migrations.js +6 -3
  246. package/dist/db/migrations.js.map +1 -1
  247. package/dist/db/query-builder.d.ts +28 -46
  248. package/dist/db/query-builder.d.ts.map +1 -1
  249. package/dist/db/query-builder.js +2 -21
  250. package/dist/db/query-builder.js.map +1 -1
  251. package/dist/db/repository/base.d.ts +38 -101
  252. package/dist/db/repository/base.d.ts.map +1 -1
  253. package/dist/db/repository/base.js +6 -38
  254. package/dist/db/repository/base.js.map +1 -1
  255. package/dist/db/repository/build-stmts.d.ts +7 -16
  256. package/dist/db/repository/build-stmts.d.ts.map +1 -1
  257. package/dist/db/repository/build-stmts.js +0 -17
  258. package/dist/db/repository/build-stmts.js.map +1 -1
  259. package/dist/db/repository/cached-stmt.d.ts +2 -6
  260. package/dist/db/repository/cached-stmt.d.ts.map +1 -1
  261. package/dist/db/repository/cached-stmt.js +0 -5
  262. package/dist/db/repository/cached-stmt.js.map +1 -1
  263. package/dist/db/repository/cfg.d.ts +21 -14
  264. package/dist/db/repository/cfg.d.ts.map +1 -1
  265. package/dist/db/repository/cfg.js +0 -11
  266. package/dist/db/repository/cfg.js.map +1 -1
  267. package/dist/db/repository/cochange.d.ts +4 -10
  268. package/dist/db/repository/cochange.d.ts.map +1 -1
  269. package/dist/db/repository/cochange.js +0 -7
  270. package/dist/db/repository/cochange.js.map +1 -1
  271. package/dist/db/repository/complexity.d.ts +2 -10
  272. package/dist/db/repository/complexity.d.ts.map +1 -1
  273. package/dist/db/repository/complexity.js +0 -3
  274. package/dist/db/repository/complexity.js.map +1 -1
  275. package/dist/db/repository/dataflow.d.ts +2 -3
  276. package/dist/db/repository/dataflow.d.ts.map +1 -1
  277. package/dist/db/repository/dataflow.js +2 -3
  278. package/dist/db/repository/dataflow.js.map +1 -1
  279. package/dist/db/repository/edges.d.ts +25 -132
  280. package/dist/db/repository/edges.d.ts.map +1 -1
  281. package/dist/db/repository/edges.js +2 -58
  282. package/dist/db/repository/edges.js.map +1 -1
  283. package/dist/db/repository/embeddings.d.ts +4 -10
  284. package/dist/db/repository/embeddings.d.ts.map +1 -1
  285. package/dist/db/repository/embeddings.js +1 -8
  286. package/dist/db/repository/embeddings.js.map +1 -1
  287. package/dist/db/repository/graph-read.d.ts +5 -28
  288. package/dist/db/repository/graph-read.d.ts.map +1 -1
  289. package/dist/db/repository/graph-read.js +0 -8
  290. package/dist/db/repository/graph-read.js.map +1 -1
  291. package/dist/db/repository/in-memory-repository.d.ts +73 -141
  292. package/dist/db/repository/in-memory-repository.d.ts.map +1 -1
  293. package/dist/db/repository/in-memory-repository.js +28 -20
  294. package/dist/db/repository/in-memory-repository.js.map +1 -1
  295. package/dist/db/repository/index.d.ts +13 -13
  296. package/dist/db/repository/index.d.ts.map +1 -1
  297. package/dist/db/repository/index.js +1 -1
  298. package/dist/db/repository/index.js.map +1 -1
  299. package/dist/db/repository/nodes.d.ts +40 -105
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  301. package/dist/db/repository/nodes.js +29 -74
  302. package/dist/db/repository/nodes.js.map +1 -1
  303. package/dist/db/repository/sqlite-repository.d.ts +48 -93
  304. package/dist/db/repository/sqlite-repository.d.ts.map +1 -1
  305. package/dist/db/repository/sqlite-repository.js +7 -2
  306. package/dist/db/repository/sqlite-repository.js.map +1 -1
  307. package/dist/domain/analysis/brief.d.ts +16 -7
  308. package/dist/domain/analysis/brief.d.ts.map +1 -1
  309. package/dist/domain/analysis/brief.js +3 -8
  310. package/dist/domain/analysis/brief.js.map +1 -1
  311. package/dist/domain/analysis/context.d.ts +240 -2
  312. package/dist/domain/analysis/context.d.ts.map +1 -1
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  315. package/dist/domain/analysis/dependencies.d.ts +113 -37
  316. package/dist/domain/analysis/dependencies.d.ts.map +1 -1
  317. package/dist/domain/analysis/dependencies.js +20 -27
  318. package/dist/domain/analysis/dependencies.js.map +1 -1
  319. package/dist/domain/analysis/exports.d.ts +7 -1
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  321. package/dist/domain/analysis/exports.js +48 -33
  322. package/dist/domain/analysis/exports.js.map +1 -1
  323. package/dist/domain/analysis/impact.d.ts +128 -16
  324. package/dist/domain/analysis/impact.d.ts.map +1 -1
  325. package/dist/domain/analysis/impact.js +14 -54
  326. package/dist/domain/analysis/impact.js.map +1 -1
  327. package/dist/domain/analysis/implementations.d.ts +28 -28
  328. package/dist/domain/analysis/implementations.d.ts.map +1 -1
  329. package/dist/domain/analysis/implementations.js +0 -10
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  331. package/dist/domain/analysis/module-map.d.ts +44 -24
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  333. package/dist/domain/analysis/module-map.js +19 -7
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  335. package/dist/domain/analysis/roles.d.ts +13 -1
  336. package/dist/domain/analysis/roles.d.ts.map +1 -1
  337. package/dist/domain/analysis/roles.js +10 -2
  338. package/dist/domain/analysis/roles.js.map +1 -1
  339. package/dist/domain/analysis/symbol-lookup.d.ts +120 -7
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  341. package/dist/domain/analysis/symbol-lookup.js +11 -7
  342. package/dist/domain/analysis/symbol-lookup.js.map +1 -1
  343. package/dist/domain/graph/builder/context.d.ts +32 -67
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  345. package/dist/domain/graph/builder/context.js +0 -36
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  347. package/dist/domain/graph/builder/helpers.d.ts +14 -14
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  1037. package/src/cli/commands/{dataflow.js → dataflow.ts} +5 -4
  1038. package/src/cli/commands/{deps.js → deps.ts} +4 -3
  1039. package/src/cli/commands/{diff-impact.js → diff-impact.ts} +3 -2
  1040. package/src/cli/commands/{embed.js → embed.ts} +6 -4
  1041. package/src/cli/commands/{export.js → export.ts} +8 -7
  1042. package/src/cli/commands/{exports.js → exports.ts} +3 -2
  1043. package/src/cli/commands/{flow.js → flow.ts} +4 -3
  1044. package/src/cli/commands/{fn-impact.js → fn-impact.ts} +5 -4
  1045. package/src/cli/commands/{impact.js → impact.ts} +3 -2
  1046. package/src/cli/commands/{implementations.js → implementations.ts} +4 -3
  1047. package/src/cli/commands/{info.js → info.ts} +6 -3
  1048. package/src/cli/commands/{interfaces.js → interfaces.ts} +4 -3
  1049. package/src/cli/commands/{map.js → map.ts} +3 -2
  1050. package/src/cli/commands/{mcp.js → mcp.ts} +8 -7
  1051. package/src/cli/commands/models.ts +29 -0
  1052. package/src/cli/commands/{owners.js → owners.ts} +3 -2
  1053. package/src/cli/commands/{path.js → path.ts} +6 -5
  1054. package/src/cli/commands/{plot.js → plot.ts} +35 -14
  1055. package/src/cli/commands/{query.js → query.ts} +8 -7
  1056. package/src/cli/commands/{registry.js → registry.ts} +12 -6
  1057. package/src/cli/commands/{roles.js → roles.ts} +3 -2
  1058. package/src/cli/commands/{search.js → search.ts} +12 -15
  1059. package/src/cli/commands/{sequence.js → sequence.ts} +5 -4
  1060. package/src/cli/commands/{snapshot.js → snapshot.ts} +5 -4
  1061. package/src/cli/commands/{stats.js → stats.ts} +2 -1
  1062. package/src/cli/commands/{structure.js → structure.ts} +4 -2
  1063. package/src/cli/commands/{triage.js → triage.ts} +14 -13
  1064. package/src/cli/commands/{watch.js → watch.ts} +3 -2
  1065. package/src/cli/commands/{where.js → where.ts} +3 -2
  1066. package/src/cli/{index.js → index.ts} +40 -15
  1067. package/src/cli/shared/{open-graph.js → open-graph.ts} +5 -5
  1068. package/src/cli/shared/{options.js → options.ts} +6 -6
  1069. package/src/cli/types.ts +33 -0
  1070. package/src/{cli.js → cli.ts} +3 -2
  1071. package/src/db/{connection.js → connection.ts} +46 -37
  1072. package/src/db/{index.js → index.ts} +4 -0
  1073. package/src/db/{migrations.js → migrations.ts} +33 -11
  1074. package/src/db/{query-builder.js → query-builder.ts} +50 -65
  1075. package/src/db/repository/base.ts +192 -0
  1076. package/src/db/repository/{build-stmts.js → build-stmts.ts} +28 -22
  1077. package/src/db/repository/{cached-stmt.js → cached-stmt.ts} +8 -7
  1078. package/src/db/repository/{cfg.js → cfg.ts} +27 -18
  1079. package/src/db/repository/{cochange.js → cochange.ts} +8 -14
  1080. package/src/db/repository/{complexity.js → complexity.ts} +6 -5
  1081. package/src/db/repository/dataflow.ts +19 -0
  1082. package/src/db/repository/{edges.js → edges.ts} +57 -95
  1083. package/src/db/repository/{embeddings.js → embeddings.ts} +10 -14
  1084. package/src/db/repository/{graph-read.js → graph-read.ts} +17 -17
  1085. package/src/db/repository/{in-memory-repository.js → in-memory-repository.ts} +155 -93
  1086. package/src/db/repository/{index.js → index.ts} +2 -0
  1087. package/src/db/repository/{nodes.js → nodes.ts} +120 -106
  1088. package/src/db/repository/{sqlite-repository.js → sqlite-repository.ts} +71 -42
  1089. package/src/domain/analysis/{brief.js → brief.ts} +34 -19
  1090. package/src/domain/analysis/{context.js → context.ts} +179 -79
  1091. package/src/domain/analysis/{dependencies.js → dependencies.ts} +149 -61
  1092. package/src/domain/analysis/{exports.js → exports.ts} +101 -54
  1093. package/src/domain/analysis/{impact.js → impact.ts} +178 -132
  1094. package/src/domain/analysis/{implementations.js → implementations.ts} +13 -14
  1095. package/src/domain/analysis/{module-map.js → module-map.ts} +128 -61
  1096. package/src/domain/analysis/{roles.js → roles.ts} +24 -6
  1097. package/src/domain/analysis/{symbol-lookup.js → symbol-lookup.ts} +78 -34
  1098. package/src/domain/graph/builder/context.ts +81 -0
  1099. package/src/domain/graph/builder/helpers.ts +289 -0
  1100. package/src/domain/graph/builder/{incremental.js → incremental.ts} +179 -76
  1101. package/src/domain/graph/builder/{pipeline.js → pipeline.ts} +33 -27
  1102. package/src/domain/graph/builder/stages/{build-edges.js → build-edges.ts} +174 -56
  1103. package/src/domain/graph/builder/stages/{build-structure.js → build-structure.ts} +34 -17
  1104. package/src/domain/graph/builder/stages/{collect-files.js → collect-files.ts} +6 -8
  1105. package/src/domain/graph/builder/stages/{detect-changes.js → detect-changes.ts} +156 -123
  1106. package/src/domain/graph/builder/stages/{finalize.js → finalize.ts} +79 -41
  1107. package/src/domain/graph/builder/stages/{insert-nodes.js → insert-nodes.ts} +102 -47
  1108. package/src/domain/graph/builder/stages/{parse-files.js → parse-files.ts} +2 -4
  1109. package/src/domain/graph/builder/stages/{resolve-imports.js → resolve-imports.ts} +26 -39
  1110. package/src/domain/graph/builder/stages/{run-analyses.js → run-analyses.ts} +10 -7
  1111. package/src/domain/graph/{change-journal.js → change-journal.ts} +48 -37
  1112. package/src/domain/graph/cycles.ts +66 -0
  1113. package/src/domain/graph/{journal.js → journal.ts} +22 -26
  1114. package/src/domain/graph/{resolve.js → resolve.ts} +125 -35
  1115. package/src/domain/graph/{watcher.js → watcher.ts} +45 -19
  1116. package/src/domain/{parser.js → parser.ts} +151 -105
  1117. package/src/domain/{queries.js → queries.ts} +1 -1
  1118. package/src/domain/search/{generator.js → generator.ts} +28 -21
  1119. package/src/domain/search/{index.js → index.ts} +2 -0
  1120. package/src/domain/search/{models.js → models.ts} +62 -38
  1121. package/src/domain/search/search/{cli-formatter.js → cli-formatter.ts} +22 -21
  1122. package/src/domain/search/search/{filters.js → filters.ts} +7 -19
  1123. package/src/domain/search/search/{hybrid.js → hybrid.ts} +69 -25
  1124. package/src/domain/search/search/{keyword.js → keyword.ts} +42 -16
  1125. package/src/domain/search/search/{prepare.js → prepare.ts} +34 -13
  1126. package/src/domain/search/search/{semantic.js → semantic.ts} +73 -37
  1127. package/src/domain/search/stores/{fts5.js → fts5.ts} +8 -8
  1128. package/src/domain/search/stores/sqlite-blob.ts +15 -0
  1129. package/src/domain/search/strategies/{source.js → source.ts} +6 -1
  1130. package/src/domain/search/strategies/{structured.js → structured.ts} +12 -7
  1131. package/src/domain/search/strategies/{text-utils.js → text-utils.ts} +9 -11
  1132. package/src/extractors/{csharp.js → csharp.ts} +71 -42
  1133. package/src/extractors/{go.js → go.ts} +105 -30
  1134. package/src/extractors/{hcl.js → hcl.ts} +52 -27
  1135. package/src/extractors/{helpers.js → helpers.ts} +20 -15
  1136. package/src/extractors/{java.js → java.ts} +43 -24
  1137. package/src/extractors/{javascript.js → javascript.ts} +165 -133
  1138. package/src/extractors/{php.js → php.ts} +45 -32
  1139. package/src/extractors/{python.js → python.ts} +63 -36
  1140. package/src/extractors/{ruby.js → ruby.ts} +40 -25
  1141. package/src/extractors/{rust.js → rust.ts} +41 -31
  1142. package/src/features/{ast.js → ast.ts} +117 -72
  1143. package/src/features/{audit.js → audit.ts} +173 -54
  1144. package/src/features/batch.ts +182 -0
  1145. package/src/features/{boundaries.js → boundaries.ts} +101 -116
  1146. package/src/features/{branch-compare.js → branch-compare.ts} +153 -81
  1147. package/src/features/{cfg.js → cfg.ts} +230 -88
  1148. package/src/features/{check.js → check.ts} +143 -70
  1149. package/src/features/{cochange.js → cochange.ts} +117 -97
  1150. package/src/features/{communities.js → communities.ts} +85 -57
  1151. package/src/features/{complexity.js → complexity.ts} +256 -156
  1152. package/src/features/{dataflow.js → dataflow.ts} +242 -143
  1153. package/src/features/{export.js → export.ts} +164 -52
  1154. package/src/features/{flow.js → flow.ts} +63 -45
  1155. package/src/features/{graph-enrichment.js → graph-enrichment.ts} +138 -49
  1156. package/src/features/{manifesto.js → manifesto.ts} +138 -77
  1157. package/src/features/{owners.js → owners.ts} +88 -73
  1158. package/src/features/{sequence.js → sequence.ts} +114 -65
  1159. package/src/features/shared/{find-nodes.js → find-nodes.ts} +10 -13
  1160. package/src/features/{snapshot.js → snapshot.ts} +28 -47
  1161. package/src/features/{structure.js → structure.ts} +309 -130
  1162. package/src/features/{triage.js → triage.ts} +80 -42
  1163. package/src/graph/algorithms/{bfs.js → bfs.ts} +18 -10
  1164. package/src/graph/algorithms/{centrality.js → centrality.ts} +9 -5
  1165. package/src/graph/algorithms/{index.js → index.ts} +1 -0
  1166. package/src/graph/algorithms/leiden/LICENSE +24 -0
  1167. package/src/graph/algorithms/leiden/adapter.ts +204 -0
  1168. package/src/graph/algorithms/leiden/cpm.ts +77 -0
  1169. package/src/graph/algorithms/leiden/index.ts +185 -0
  1170. package/src/graph/algorithms/leiden/modularity.ts +122 -0
  1171. package/src/graph/algorithms/leiden/optimiser.ts +598 -0
  1172. package/src/graph/algorithms/leiden/partition.ts +479 -0
  1173. package/src/graph/algorithms/leiden/rng.ts +20 -0
  1174. package/src/graph/algorithms/louvain.ts +47 -0
  1175. package/src/graph/algorithms/{shortest-path.js → shortest-path.ts} +9 -10
  1176. package/src/graph/algorithms/{tarjan.js → tarjan.ts} +15 -14
  1177. package/src/graph/builders/{dependency.js → dependency.ts} +43 -17
  1178. package/src/graph/builders/structure.ts +58 -0
  1179. package/src/graph/builders/temporal.ts +51 -0
  1180. package/src/graph/classifiers/{risk.js → risk.ts} +52 -22
  1181. package/src/graph/classifiers/{roles.js → roles.ts} +32 -16
  1182. package/src/graph/{model.js → model.ts} +49 -58
  1183. package/src/index.cjs +1 -1
  1184. package/src/infrastructure/{config.js → config.ts} +82 -54
  1185. package/src/infrastructure/{logger.js → logger.ts} +6 -6
  1186. package/src/infrastructure/{native.js → native.ts} +16 -15
  1187. package/src/infrastructure/{registry.js → registry.ts} +48 -16
  1188. package/src/infrastructure/{test-filter.js → test-filter.ts} +1 -1
  1189. package/src/infrastructure/{update-check.js → update-check.ts} +30 -16
  1190. package/src/mcp/{middleware.js → middleware.ts} +6 -12
  1191. package/src/mcp/server.ts +249 -0
  1192. package/src/mcp/{tool-registry.js → tool-registry.ts} +16 -9
  1193. package/src/mcp/tools/{ast-query.js → ast-query.ts} +12 -1
  1194. package/src/mcp/tools/{audit.js → audit.ts} +14 -2
  1195. package/src/mcp/tools/batch-query.ts +22 -0
  1196. package/src/mcp/tools/{branch-compare.js → branch-compare.ts} +11 -1
  1197. package/src/mcp/tools/brief.ts +15 -0
  1198. package/src/mcp/tools/{cfg.js → cfg.ts} +13 -2
  1199. package/src/mcp/tools/{check.js → check.ts} +20 -3
  1200. package/src/mcp/tools/{co-changes.js → co-changes.ts} +10 -1
  1201. package/src/mcp/tools/code-owners.ts +22 -0
  1202. package/src/mcp/tools/{communities.js → communities.ts} +11 -1
  1203. package/src/mcp/tools/{complexity.js → complexity.ts} +14 -2
  1204. package/src/mcp/tools/{context.js → context.ts} +14 -1
  1205. package/src/mcp/tools/{dataflow.js → dataflow.ts} +15 -3
  1206. package/src/mcp/tools/{diff-impact.js → diff-impact.ts} +12 -1
  1207. package/src/mcp/tools/{execution-flow.js → execution-flow.ts} +13 -1
  1208. package/src/mcp/tools/{export-graph.js → export-graph.ts} +13 -3
  1209. package/src/mcp/tools/{file-deps.js → file-deps.ts} +9 -1
  1210. package/src/mcp/tools/{file-exports.js → file-exports.ts} +10 -1
  1211. package/src/mcp/tools/{find-cycles.js → find-cycles.ts} +5 -1
  1212. package/src/mcp/tools/{fn-impact.js → fn-impact.ts} +12 -1
  1213. package/src/mcp/tools/impact-analysis.ts +15 -0
  1214. package/src/mcp/tools/{implementations.js → implementations.ts} +11 -1
  1215. package/src/mcp/tools/{index.js → index.ts} +11 -3
  1216. package/src/mcp/tools/{interfaces.js → interfaces.ts} +11 -1
  1217. package/src/mcp/tools/{list-functions.js → list-functions.ts} +10 -1
  1218. package/src/mcp/tools/list-repos.ts +17 -0
  1219. package/src/mcp/tools/module-map.ts +13 -0
  1220. package/src/mcp/tools/{node-roles.js → node-roles.ts} +10 -1
  1221. package/src/mcp/tools/path.ts +24 -0
  1222. package/src/mcp/tools/{query.js → query.ts} +19 -2
  1223. package/src/mcp/tools/{semantic-search.js → semantic-search.ts} +13 -4
  1224. package/src/mcp/tools/{sequence.js → sequence.ts} +15 -2
  1225. package/src/mcp/tools/{structure.js → structure.ts} +11 -1
  1226. package/src/mcp/tools/symbol-children.ts +24 -0
  1227. package/src/mcp/tools/{triage.js → triage.ts} +20 -5
  1228. package/src/mcp/tools/{where.js → where.ts} +10 -1
  1229. package/src/presentation/{audit.js → audit.ts} +23 -6
  1230. package/src/presentation/batch.ts +49 -0
  1231. package/src/presentation/{branch-compare.js → branch-compare.ts} +59 -12
  1232. package/src/presentation/{brief.js → brief.ts} +26 -14
  1233. package/src/presentation/{cfg.js → cfg.ts} +37 -5
  1234. package/src/presentation/{check.js → check.ts} +61 -5
  1235. package/src/presentation/{cochange.js → cochange.ts} +30 -10
  1236. package/src/presentation/{colors.js → colors.ts} +8 -3
  1237. package/src/presentation/{communities.js → communities.ts} +45 -5
  1238. package/src/presentation/{complexity.js → complexity.ts} +49 -5
  1239. package/src/presentation/dataflow.ts +173 -0
  1240. package/src/presentation/{export.js → export.ts} +160 -95
  1241. package/src/presentation/{flow.js → flow.ts} +39 -8
  1242. package/src/presentation/{manifesto.js → manifesto.ts} +26 -7
  1243. package/src/presentation/{owners.js → owners.ts} +43 -6
  1244. package/src/presentation/queries-cli/{exports.js → exports.ts} +49 -8
  1245. package/src/presentation/queries-cli/{impact.js → impact.ts} +139 -23
  1246. package/src/presentation/queries-cli/{inspect.js → inspect.ts} +209 -28
  1247. package/src/presentation/queries-cli/{overview.js → overview.ts} +151 -30
  1248. package/src/presentation/queries-cli/{path.js → path.ts} +53 -9
  1249. package/src/presentation/{query.js → query.ts} +0 -4
  1250. package/src/presentation/{result-formatter.js → result-formatter.ts} +44 -48
  1251. package/src/presentation/sequence-renderer.ts +46 -0
  1252. package/src/presentation/{sequence.js → sequence.ts} +16 -5
  1253. package/src/presentation/{structure.js → structure.ts} +62 -5
  1254. package/src/presentation/{table.js → table.ts} +14 -8
  1255. package/src/presentation/{triage.js → triage.ts} +44 -8
  1256. package/src/presentation/{viewer.js → viewer.ts} +96 -54
  1257. package/src/shared/{constants.js → constants.ts} +4 -4
  1258. package/src/shared/{errors.js → errors.ts} +16 -20
  1259. package/src/shared/{file-utils.js → file-utils.ts} +55 -23
  1260. package/src/shared/{generators.js → generators.ts} +78 -31
  1261. package/src/shared/{hierarchy.js → hierarchy.ts} +12 -6
  1262. package/src/shared/{kinds.js → kinds.ts} +34 -12
  1263. package/src/shared/{normalize.js → normalize.ts} +37 -10
  1264. package/src/shared/{paginate.js → paginate.ts} +30 -19
  1265. package/src/types.ts +258 -17
  1266. package/src/vendor.d.ts +39 -0
  1267. package/dist/index.cjs.map +0 -1
  1268. package/dist/index.d.cts +0 -3
  1269. package/dist/index.d.cts.map +0 -1
  1270. package/src/cli/commands/models.js +0 -19
  1271. package/src/db/repository/base.js +0 -201
  1272. package/src/db/repository/dataflow.js +0 -17
  1273. package/src/domain/graph/builder/context.js +0 -85
  1274. package/src/domain/graph/builder/helpers.js +0 -218
  1275. package/src/domain/graph/cycles.js +0 -82
  1276. package/src/domain/search/stores/sqlite-blob.js +0 -24
  1277. package/src/features/batch.js +0 -156
  1278. package/src/graph/algorithms/louvain.js +0 -26
  1279. package/src/graph/builders/structure.js +0 -40
  1280. package/src/graph/builders/temporal.js +0 -33
  1281. package/src/mcp/server.js +0 -143
  1282. package/src/mcp/tools/batch-query.js +0 -11
  1283. package/src/mcp/tools/brief.js +0 -8
  1284. package/src/mcp/tools/code-owners.js +0 -12
  1285. package/src/mcp/tools/impact-analysis.js +0 -12
  1286. package/src/mcp/tools/list-repos.js +0 -11
  1287. package/src/mcp/tools/module-map.js +0 -6
  1288. package/src/mcp/tools/path.js +0 -12
  1289. package/src/mcp/tools/symbol-children.js +0 -14
  1290. package/src/presentation/batch.js +0 -26
  1291. package/src/presentation/dataflow.js +0 -110
  1292. package/src/presentation/sequence-renderer.js +0 -43
  1293. /package/src/cli/shared/{output.js → output.ts} +0 -0
  1294. /package/src/domain/graph/{builder.js → builder.ts} +0 -0
  1295. /package/src/extractors/{index.js → index.ts} +0 -0
  1296. /package/src/graph/builders/{index.js → index.ts} +0 -0
  1297. /package/src/graph/classifiers/{index.js → index.ts} +0 -0
  1298. /package/src/graph/{index.js → index.ts} +0 -0
  1299. /package/src/{index.js → index.ts} +0 -0
  1300. /package/src/infrastructure/{result-formatter.js → result-formatter.ts} +0 -0
  1301. /package/src/mcp/{index.js → index.ts} +0 -0
  1302. /package/src/presentation/queries-cli/{index.js → index.ts} +0 -0
  1303. /package/src/presentation/{queries-cli.js → queries-cli.ts} +0 -0
@@ -5,11 +5,23 @@ import { debug } from '../infrastructure/logger.js';
5
5
  import { isTestFile } from '../infrastructure/test-filter.js';
6
6
  import { normalizePath } from '../shared/constants.js';
7
7
  import { paginateResult } from '../shared/paginate.js';
8
+ import type { BetterSqlite3Database, CodegraphConfig } from '../types.js';
8
9
 
9
10
  // ─── Build-time helpers ───────────────────────────────────────────────
10
11
 
11
- function getAncestorDirs(filePaths) {
12
- const dirs = new Set();
12
+ interface NodeIdStmt {
13
+ get(name: string, kind: string, file: string, line: number): { id: number } | undefined;
14
+ }
15
+
16
+ interface FileSymbolData {
17
+ definitions: { name: string; kind: string; line: number }[];
18
+ imports: unknown[];
19
+ exports: unknown[];
20
+ calls?: unknown[];
21
+ }
22
+
23
+ function getAncestorDirs(filePaths: string[]): Set<string> {
24
+ const dirs = new Set<string>();
13
25
  for (const f of filePaths) {
14
26
  let d = normalizePath(path.dirname(f));
15
27
  while (d && d !== '.') {
@@ -20,9 +32,14 @@ function getAncestorDirs(filePaths) {
20
32
  return dirs;
21
33
  }
22
34
 
23
- function cleanupPreviousData(db, getNodeIdStmt, isIncremental, changedFiles) {
35
+ function cleanupPreviousData(
36
+ db: BetterSqlite3Database,
37
+ getNodeIdStmt: NodeIdStmt,
38
+ isIncremental: boolean,
39
+ changedFiles: string[] | null,
40
+ ): void {
24
41
  if (isIncremental) {
25
- const affectedDirs = getAncestorDirs(changedFiles);
42
+ const affectedDirs = getAncestorDirs(changedFiles ?? []);
26
43
  const deleteContainsForDir = db.prepare(
27
44
  "DELETE FROM edges WHERE kind = 'contains' AND source_id IN (SELECT id FROM nodes WHERE name = ? AND kind = 'directory')",
28
45
  );
@@ -31,7 +48,7 @@ function cleanupPreviousData(db, getNodeIdStmt, isIncremental, changedFiles) {
31
48
  for (const dir of affectedDirs) {
32
49
  deleteContainsForDir.run(dir);
33
50
  }
34
- for (const f of changedFiles) {
51
+ for (const f of changedFiles ?? []) {
35
52
  const fileRow = getNodeIdStmt.get(f, 'file', f, 0);
36
53
  if (fileRow) deleteMetricForNode.run(fileRow.id);
37
54
  }
@@ -50,8 +67,11 @@ function cleanupPreviousData(db, getNodeIdStmt, isIncremental, changedFiles) {
50
67
  }
51
68
  }
52
69
 
53
- function collectAllDirectories(directories, fileSymbols) {
54
- const allDirs = new Set();
70
+ function collectAllDirectories(
71
+ directories: Set<string> | Iterable<string>,
72
+ fileSymbols: Map<string, FileSymbolData>,
73
+ ): Set<string> {
74
+ const allDirs = new Set<string>();
55
75
  for (const dir of directories) {
56
76
  let d = dir;
57
77
  while (d && d !== '.') {
@@ -69,9 +89,20 @@ function collectAllDirectories(directories, fileSymbols) {
69
89
  return allDirs;
70
90
  }
71
91
 
72
- function insertContainsEdges(db, insertEdge, getNodeIdStmt, fileSymbols, allDirs, changedFiles) {
92
+ interface SqliteStatement {
93
+ run(...params: unknown[]): unknown;
94
+ }
95
+
96
+ function insertContainsEdges(
97
+ db: BetterSqlite3Database,
98
+ insertEdge: SqliteStatement,
99
+ getNodeIdStmt: NodeIdStmt,
100
+ fileSymbols: Map<string, FileSymbolData>,
101
+ allDirs: Set<string>,
102
+ changedFiles: string[] | null,
103
+ ): void {
73
104
  const isIncremental = changedFiles != null && changedFiles.length > 0;
74
- const affectedDirs = isIncremental ? getAncestorDirs(changedFiles) : null;
105
+ const affectedDirs = isIncremental ? getAncestorDirs(changedFiles ?? []) : null;
75
106
 
76
107
  db.transaction(() => {
77
108
  for (const relPath of fileSymbols.keys()) {
@@ -97,9 +128,18 @@ function insertContainsEdges(db, insertEdge, getNodeIdStmt, fileSymbols, allDirs
97
128
  })();
98
129
  }
99
130
 
100
- function computeImportEdgeMaps(db) {
101
- const fanInMap = new Map();
102
- const fanOutMap = new Map();
131
+ interface ImportEdge {
132
+ source_file: string;
133
+ target_file: string;
134
+ }
135
+
136
+ function computeImportEdgeMaps(db: BetterSqlite3Database): {
137
+ fanInMap: Map<string, number>;
138
+ fanOutMap: Map<string, number>;
139
+ importEdges: ImportEdge[];
140
+ } {
141
+ const fanInMap = new Map<string, number>();
142
+ const fanOutMap = new Map<string, number>();
103
143
  const importEdges = db
104
144
  .prepare(`
105
145
  SELECT n1.file AS source_file, n2.file AS target_file
@@ -109,7 +149,7 @@ function computeImportEdgeMaps(db) {
109
149
  WHERE e.kind IN ('imports', 'imports-type')
110
150
  AND n1.file != n2.file
111
151
  `)
112
- .all();
152
+ .all() as ImportEdge[];
113
153
 
114
154
  for (const { source_file, target_file } of importEdges) {
115
155
  fanOutMap.set(source_file, (fanOutMap.get(source_file) || 0) + 1);
@@ -119,21 +159,21 @@ function computeImportEdgeMaps(db) {
119
159
  }
120
160
 
121
161
  function computeFileMetrics(
122
- db,
123
- upsertMetric,
124
- getNodeIdStmt,
125
- fileSymbols,
126
- lineCountMap,
127
- fanInMap,
128
- fanOutMap,
129
- ) {
162
+ db: BetterSqlite3Database,
163
+ upsertMetric: SqliteStatement,
164
+ getNodeIdStmt: NodeIdStmt,
165
+ fileSymbols: Map<string, FileSymbolData>,
166
+ lineCountMap: Map<string, number>,
167
+ fanInMap: Map<string, number>,
168
+ fanOutMap: Map<string, number>,
169
+ ): void {
130
170
  db.transaction(() => {
131
171
  for (const [relPath, symbols] of fileSymbols) {
132
172
  const fileRow = getNodeIdStmt.get(relPath, 'file', relPath, 0);
133
173
  if (!fileRow) continue;
134
174
 
135
175
  const lineCount = lineCountMap.get(relPath) || 0;
136
- const seen = new Set();
176
+ const seen = new Set<string>();
137
177
  let symbolCount = 0;
138
178
  for (const d of symbols.definitions) {
139
179
  const key = `${d.name}|${d.kind}|${d.line}`;
@@ -163,14 +203,14 @@ function computeFileMetrics(
163
203
  }
164
204
 
165
205
  function computeDirectoryMetrics(
166
- db,
167
- upsertMetric,
168
- getNodeIdStmt,
169
- fileSymbols,
170
- allDirs,
171
- importEdges,
172
- ) {
173
- const dirFiles = new Map();
206
+ db: BetterSqlite3Database,
207
+ upsertMetric: SqliteStatement,
208
+ getNodeIdStmt: NodeIdStmt,
209
+ fileSymbols: Map<string, FileSymbolData>,
210
+ allDirs: Set<string>,
211
+ importEdges: ImportEdge[],
212
+ ): void {
213
+ const dirFiles = new Map<string, string[]>();
174
214
  for (const dir of allDirs) {
175
215
  dirFiles.set(dir, []);
176
216
  }
@@ -178,21 +218,21 @@ function computeDirectoryMetrics(
178
218
  let d = normalizePath(path.dirname(relPath));
179
219
  while (d && d !== '.') {
180
220
  if (dirFiles.has(d)) {
181
- dirFiles.get(d).push(relPath);
221
+ dirFiles.get(d)?.push(relPath);
182
222
  }
183
223
  d = normalizePath(path.dirname(d));
184
224
  }
185
225
  }
186
226
 
187
- const fileToAncestorDirs = new Map();
227
+ const fileToAncestorDirs = new Map<string, Set<string>>();
188
228
  for (const [dir, files] of dirFiles) {
189
229
  for (const f of files) {
190
230
  if (!fileToAncestorDirs.has(f)) fileToAncestorDirs.set(f, new Set());
191
- fileToAncestorDirs.get(f).add(dir);
231
+ fileToAncestorDirs.get(f)?.add(dir);
192
232
  }
193
233
  }
194
234
 
195
- const dirEdgeCounts = new Map();
235
+ const dirEdgeCounts = new Map<string, { intra: number; fanIn: number; fanOut: number }>();
196
236
  for (const dir of allDirs) {
197
237
  dirEdgeCounts.set(dir, { intra: 0, fanIn: 0, fanOut: 0 });
198
238
  }
@@ -233,7 +273,7 @@ function computeDirectoryMetrics(
233
273
  for (const f of files) {
234
274
  const sym = fileSymbols.get(f);
235
275
  if (sym) {
236
- const seen = new Set();
276
+ const seen = new Set<string>();
237
277
  for (const d of sym.definitions) {
238
278
  const key = `${d.name}|${d.kind}|${d.line}`;
239
279
  if (!seen.has(key)) {
@@ -265,22 +305,19 @@ function computeDirectoryMetrics(
265
305
 
266
306
  // ─── Build-time: insert directory nodes, contains edges, and metrics ────
267
307
 
268
- /**
269
- * Build directory structure nodes, containment edges, and compute metrics.
270
- * Called from builder.js after edge building.
271
- *
272
- * @param {import('better-sqlite3').Database} db - Open read-write database
273
- * @param {Map<string, object>} fileSymbols - Map of relPath → { definitions, imports, exports, calls }
274
- * @param {string} rootDir - Absolute root directory
275
- * @param {Map<string, number>} lineCountMap - Map of relPath → line count
276
- * @param {Set<string>} directories - Set of relative directory paths
277
- */
278
- export function buildStructure(db, fileSymbols, _rootDir, lineCountMap, directories, changedFiles) {
308
+ export function buildStructure(
309
+ db: BetterSqlite3Database,
310
+ fileSymbols: Map<string, FileSymbolData>,
311
+ _rootDir: string,
312
+ lineCountMap: Map<string, number>,
313
+ directories: Set<string>,
314
+ changedFiles?: string[] | null,
315
+ ): void {
279
316
  const insertNode = db.prepare(
280
317
  'INSERT OR IGNORE INTO nodes (name, kind, file, line, end_line) VALUES (?, ?, ?, ?, ?)',
281
318
  );
282
- const getNodeIdStmt = {
283
- get: (name, kind, file, line) => {
319
+ const getNodeIdStmt: NodeIdStmt = {
320
+ get: (name: string, kind: string, file: string, line: number) => {
284
321
  const id = getNodeId(db, name, kind, file, line);
285
322
  return id != null ? { id } : undefined;
286
323
  },
@@ -296,7 +333,7 @@ export function buildStructure(db, fileSymbols, _rootDir, lineCountMap, director
296
333
 
297
334
  const isIncremental = changedFiles != null && changedFiles.length > 0;
298
335
 
299
- cleanupPreviousData(db, getNodeIdStmt, isIncremental, changedFiles);
336
+ cleanupPreviousData(db, getNodeIdStmt, isIncremental, changedFiles ?? null);
300
337
 
301
338
  const allDirs = collectAllDirectories(directories, fileSymbols);
302
339
 
@@ -306,7 +343,7 @@ export function buildStructure(db, fileSymbols, _rootDir, lineCountMap, director
306
343
  }
307
344
  })();
308
345
 
309
- insertContainsEdges(db, insertEdge, getNodeIdStmt, fileSymbols, allDirs, changedFiles);
346
+ insertContainsEdges(db, insertEdge, getNodeIdStmt, fileSymbols, allDirs, changedFiles ?? null);
310
347
 
311
348
  const { fanInMap, fanOutMap, importEdges } = computeImportEdgeMaps(db);
312
349
 
@@ -332,7 +369,22 @@ export { FRAMEWORK_ENTRY_PREFIXES } from '../graph/classifiers/roles.js';
332
369
 
333
370
  import { classifyRoles } from '../graph/classifiers/roles.js';
334
371
 
335
- export function classifyNodeRoles(db) {
372
+ interface RoleSummary {
373
+ entry: number;
374
+ core: number;
375
+ utility: number;
376
+ adapter: number;
377
+ dead: number;
378
+ 'dead-leaf': number;
379
+ 'dead-entry': number;
380
+ 'dead-ffi': number;
381
+ 'dead-unresolved': number;
382
+ 'test-only': number;
383
+ leaf: number;
384
+ [key: string]: number;
385
+ }
386
+
387
+ export function classifyNodeRoles(db: BetterSqlite3Database): RoleSummary {
336
388
  const rows = db
337
389
  .prepare(
338
390
  `SELECT n.id, n.name, n.kind, n.file,
@@ -347,39 +399,47 @@ export function classifyNodeRoles(db) {
347
399
  ) fo ON n.id = fo.source_id
348
400
  WHERE n.kind NOT IN ('file', 'directory')`,
349
401
  )
350
- .all();
351
-
352
- if (rows.length === 0) {
353
- return {
354
- entry: 0,
355
- core: 0,
356
- utility: 0,
357
- adapter: 0,
358
- dead: 0,
359
- 'dead-leaf': 0,
360
- 'dead-entry': 0,
361
- 'dead-ffi': 0,
362
- 'dead-unresolved': 0,
363
- 'test-only': 0,
364
- leaf: 0,
365
- };
366
- }
402
+ .all() as {
403
+ id: number;
404
+ name: string;
405
+ kind: string;
406
+ file: string;
407
+ fan_in: number;
408
+ fan_out: number;
409
+ }[];
410
+
411
+ const emptySummary: RoleSummary = {
412
+ entry: 0,
413
+ core: 0,
414
+ utility: 0,
415
+ adapter: 0,
416
+ dead: 0,
417
+ 'dead-leaf': 0,
418
+ 'dead-entry': 0,
419
+ 'dead-ffi': 0,
420
+ 'dead-unresolved': 0,
421
+ 'test-only': 0,
422
+ leaf: 0,
423
+ };
424
+
425
+ if (rows.length === 0) return emptySummary;
367
426
 
368
427
  const exportedIds = new Set(
369
- db
370
- .prepare(
371
- `SELECT DISTINCT e.target_id
428
+ (
429
+ db
430
+ .prepare(
431
+ `SELECT DISTINCT e.target_id
372
432
  FROM edges e
373
433
  JOIN nodes caller ON e.source_id = caller.id
374
434
  JOIN nodes target ON e.target_id = target.id
375
435
  WHERE e.kind = 'calls' AND caller.file != target.file`,
376
- )
377
- .all()
378
- .map((r) => r.target_id),
436
+ )
437
+ .all() as { target_id: number }[]
438
+ ).map((r) => r.target_id),
379
439
  );
380
440
 
381
441
  // Compute production fan-in (excluding callers in test files)
382
- const prodFanInMap = new Map();
442
+ const prodFanInMap = new Map<number, number>();
383
443
  const prodRows = db
384
444
  .prepare(
385
445
  `SELECT e.target_id, COUNT(*) AS cnt
@@ -389,7 +449,7 @@ export function classifyNodeRoles(db) {
389
449
  ${testFilterSQL('caller.file')}
390
450
  GROUP BY e.target_id`,
391
451
  )
392
- .all();
452
+ .all() as { target_id: number; cnt: number }[];
393
453
  for (const r of prodRows) {
394
454
  prodFanInMap.set(r.target_id, r.cnt);
395
455
  }
@@ -408,35 +468,40 @@ export function classifyNodeRoles(db) {
408
468
 
409
469
  const roleMap = classifyRoles(classifierInput);
410
470
 
411
- // Build summary and updates
412
- const summary = {
413
- entry: 0,
414
- core: 0,
415
- utility: 0,
416
- adapter: 0,
417
- dead: 0,
418
- 'dead-leaf': 0,
419
- 'dead-entry': 0,
420
- 'dead-ffi': 0,
421
- 'dead-unresolved': 0,
422
- 'test-only': 0,
423
- leaf: 0,
424
- };
425
- const updates = [];
471
+ // Build summary and group updates by role for batch UPDATE
472
+ const summary: RoleSummary = { ...emptySummary };
473
+ const idsByRole = new Map<string, number[]>();
426
474
  for (const row of rows) {
427
475
  const role = roleMap.get(String(row.id)) || 'leaf';
428
- updates.push({ id: row.id, role });
429
476
  if (role.startsWith('dead')) summary.dead++;
430
477
  summary[role] = (summary[role] || 0) + 1;
478
+ let ids = idsByRole.get(role);
479
+ if (!ids) {
480
+ ids = [];
481
+ idsByRole.set(role, ids);
482
+ }
483
+ ids.push(row.id);
431
484
  }
432
485
 
433
- const clearRoles = db.prepare('UPDATE nodes SET role = NULL');
434
- const setRole = db.prepare('UPDATE nodes SET role = ? WHERE id = ?');
435
-
486
+ // Batch UPDATE: one statement per role instead of one per node
487
+ const ROLE_CHUNK = 500;
488
+ const roleStmtCache = new Map<number, SqliteStatement>();
436
489
  db.transaction(() => {
437
- clearRoles.run();
438
- for (const u of updates) {
439
- setRole.run(u.role, u.id);
490
+ db.prepare('UPDATE nodes SET role = NULL').run();
491
+ for (const [role, ids] of idsByRole) {
492
+ for (let i = 0; i < ids.length; i += ROLE_CHUNK) {
493
+ const end = Math.min(i + ROLE_CHUNK, ids.length);
494
+ const chunkSize = end - i;
495
+ let stmt = roleStmtCache.get(chunkSize);
496
+ if (!stmt) {
497
+ const placeholders = Array.from({ length: chunkSize }, () => '?').join(',');
498
+ stmt = db.prepare(`UPDATE nodes SET role = ? WHERE id IN (${placeholders})`);
499
+ roleStmtCache.set(chunkSize, stmt);
500
+ }
501
+ const vals: unknown[] = [role];
502
+ for (let j = i; j < end; j++) vals.push(ids[j]);
503
+ stmt.run(...vals);
504
+ }
440
505
  }
441
506
  })();
442
507
 
@@ -445,10 +510,67 @@ export function classifyNodeRoles(db) {
445
510
 
446
511
  // ─── Query functions (read-only) ──────────────────────────────────────
447
512
 
448
- /**
449
- * Return hierarchical directory tree with metrics.
450
- */
451
- export function structureData(customDbPath, opts = {}) {
513
+ interface DirRow {
514
+ id: number;
515
+ name: string;
516
+ file: string;
517
+ symbol_count: number | null;
518
+ fan_in: number | null;
519
+ fan_out: number | null;
520
+ cohesion: number | null;
521
+ file_count: number | null;
522
+ }
523
+
524
+ interface FileMetricRow {
525
+ name: string;
526
+ line_count: number | null;
527
+ symbol_count: number | null;
528
+ import_count: number | null;
529
+ export_count: number | null;
530
+ fan_in: number | null;
531
+ fan_out: number | null;
532
+ }
533
+
534
+ interface StructureDataOpts {
535
+ directory?: string;
536
+ depth?: number;
537
+ sort?: string;
538
+ noTests?: boolean;
539
+ full?: boolean;
540
+ fileLimit?: number;
541
+ limit?: number;
542
+ offset?: number;
543
+ }
544
+
545
+ interface DirectoryEntry {
546
+ directory: string;
547
+ fileCount: number;
548
+ symbolCount: number;
549
+ fanIn: number;
550
+ fanOut: number;
551
+ cohesion: number | null;
552
+ density: number;
553
+ files: {
554
+ file: string;
555
+ lineCount: number;
556
+ symbolCount: number;
557
+ importCount: number;
558
+ exportCount: number;
559
+ fanIn: number;
560
+ fanOut: number;
561
+ }[];
562
+ subdirectories: string[];
563
+ }
564
+
565
+ export function structureData(
566
+ customDbPath?: string,
567
+ opts: StructureDataOpts = {},
568
+ ): {
569
+ directories: DirectoryEntry[];
570
+ count: number;
571
+ suppressed?: number;
572
+ warning?: string;
573
+ } {
452
574
  const db = openReadonlyOrFail(customDbPath);
453
575
  try {
454
576
  const rawDir = opts.directory || null;
@@ -467,7 +589,7 @@ export function structureData(customDbPath, opts = {}) {
467
589
  LEFT JOIN node_metrics nm ON n.id = nm.node_id
468
590
  WHERE n.kind = 'directory'
469
591
  `)
470
- .all();
592
+ .all() as DirRow[];
471
593
 
472
594
  if (filterDir) {
473
595
  const norm = normalizePath(filterDir);
@@ -487,7 +609,7 @@ export function structureData(customDbPath, opts = {}) {
487
609
  dirs.sort(sortFn);
488
610
 
489
611
  // Get file metrics for each directory
490
- const result = dirs.map((d) => {
612
+ const result: DirectoryEntry[] = dirs.map((d) => {
491
613
  let files = db
492
614
  .prepare(`
493
615
  SELECT n.name, nm.line_count, nm.symbol_count, nm.import_count, nm.export_count, nm.fan_in, nm.fan_out
@@ -496,7 +618,7 @@ export function structureData(customDbPath, opts = {}) {
496
618
  LEFT JOIN node_metrics nm ON n.id = nm.node_id
497
619
  WHERE e.source_id = ? AND e.kind = 'contains' AND n.kind = 'file'
498
620
  `)
499
- .all(d.id);
621
+ .all(d.id) as FileMetricRow[];
500
622
  if (noTests) files = files.filter((f) => !isTestFile(f.name));
501
623
 
502
624
  const subdirs = db
@@ -506,7 +628,7 @@ export function structureData(customDbPath, opts = {}) {
506
628
  JOIN nodes n ON e.target_id = n.id
507
629
  WHERE e.source_id = ? AND e.kind = 'contains' AND n.kind = 'directory'
508
630
  `)
509
- .all(d.id);
631
+ .all(d.id) as { name: string }[];
510
632
 
511
633
  const fileCount = noTests ? files.length : d.file_count || 0;
512
634
  return {
@@ -563,10 +685,36 @@ export function structureData(customDbPath, opts = {}) {
563
685
  }
564
686
  }
565
687
 
566
- /**
567
- * Return top N files or directories ranked by a chosen metric.
568
- */
569
- export function hotspotsData(customDbPath, opts = {}) {
688
+ interface HotspotRow {
689
+ name: string;
690
+ kind: string;
691
+ line_count: number | null;
692
+ symbol_count: number | null;
693
+ import_count: number | null;
694
+ export_count: number | null;
695
+ fan_in: number | null;
696
+ fan_out: number | null;
697
+ cohesion: number | null;
698
+ file_count: number | null;
699
+ }
700
+
701
+ interface HotspotsDataOpts {
702
+ metric?: string;
703
+ level?: string;
704
+ limit?: number;
705
+ offset?: number;
706
+ noTests?: boolean;
707
+ }
708
+
709
+ export function hotspotsData(
710
+ customDbPath?: string,
711
+ opts: HotspotsDataOpts = {},
712
+ ): {
713
+ metric: string;
714
+ level: string;
715
+ limit: number;
716
+ hotspots: unknown[];
717
+ } {
570
718
  const db = openReadonlyOrFail(customDbPath);
571
719
  try {
572
720
  const metric = opts.metric || 'fan-in';
@@ -578,7 +726,7 @@ export function hotspotsData(customDbPath, opts = {}) {
578
726
 
579
727
  const testFilter = testFilterSQL('n.name', noTests && kind === 'file');
580
728
 
581
- const HOTSPOT_QUERIES = {
729
+ const HOTSPOT_QUERIES: Record<string, { all(...params: unknown[]): HotspotRow[] }> = {
582
730
  'fan-in': db.prepare(`
583
731
  SELECT n.name, n.kind, nm.line_count, nm.symbol_count, nm.import_count, nm.export_count,
584
732
  nm.fan_in, nm.fan_out, nm.cohesion, nm.file_count
@@ -601,8 +749,9 @@ export function hotspotsData(customDbPath, opts = {}) {
601
749
  WHERE n.kind = ? ${testFilter} ORDER BY (COALESCE(nm.fan_in, 0) + COALESCE(nm.fan_out, 0)) DESC NULLS LAST LIMIT ?`),
602
750
  };
603
751
 
604
- const stmt = HOTSPOT_QUERIES[metric] || HOTSPOT_QUERIES['fan-in'];
605
- const rows = stmt.all(kind, limit);
752
+ const stmt = HOTSPOT_QUERIES[metric] ?? HOTSPOT_QUERIES['fan-in'];
753
+ // stmt is always defined: metric is a valid key or the fallback is a concrete property
754
+ const rows = stmt!.all(kind, limit);
606
755
 
607
756
  const hotspots = rows.map((r) => ({
608
757
  name: r.name,
@@ -616,10 +765,10 @@ export function hotspotsData(customDbPath, opts = {}) {
616
765
  cohesion: r.cohesion,
617
766
  fileCount: r.file_count,
618
767
  density:
619
- r.file_count > 0
620
- ? (r.symbol_count || 0) / r.file_count
621
- : r.line_count > 0
622
- ? (r.symbol_count || 0) / r.line_count
768
+ (r.file_count ?? 0) > 0
769
+ ? (r.symbol_count || 0) / (r.file_count ?? 1)
770
+ : (r.line_count ?? 0) > 0
771
+ ? (r.symbol_count || 0) / (r.line_count ?? 1)
623
772
  : 0,
624
773
  coupling: (r.fan_in || 0) + (r.fan_out || 0),
625
774
  }));
@@ -631,14 +780,35 @@ export function hotspotsData(customDbPath, opts = {}) {
631
780
  }
632
781
  }
633
782
 
634
- /**
635
- * Return directories with cohesion above threshold, with top exports/imports.
636
- */
637
- export function moduleBoundariesData(customDbPath, opts = {}) {
783
+ interface ModuleBoundariesOpts {
784
+ threshold?: number;
785
+ config?: CodegraphConfig;
786
+ }
787
+
788
+ export function moduleBoundariesData(
789
+ customDbPath?: string,
790
+ opts: ModuleBoundariesOpts = {},
791
+ ): {
792
+ threshold: number;
793
+ modules: {
794
+ directory: string;
795
+ cohesion: number | null;
796
+ fileCount: number;
797
+ symbolCount: number;
798
+ fanIn: number;
799
+ fanOut: number;
800
+ files: string[];
801
+ }[];
802
+ count: number;
803
+ } {
638
804
  const db = openReadonlyOrFail(customDbPath);
639
805
  try {
640
806
  const config = opts.config || loadConfig();
641
- const threshold = opts.threshold ?? config.structure?.cohesionThreshold ?? 0.3;
807
+ const threshold =
808
+ opts.threshold ??
809
+ (config as unknown as { structure?: { cohesionThreshold?: number } }).structure
810
+ ?.cohesionThreshold ??
811
+ 0.3;
642
812
 
643
813
  const dirs = db
644
814
  .prepare(`
@@ -648,18 +818,27 @@ export function moduleBoundariesData(customDbPath, opts = {}) {
648
818
  WHERE n.kind = 'directory' AND nm.cohesion IS NOT NULL AND nm.cohesion >= ?
649
819
  ORDER BY nm.cohesion DESC
650
820
  `)
651
- .all(threshold);
821
+ .all(threshold) as {
822
+ id: number;
823
+ name: string;
824
+ symbol_count: number | null;
825
+ fan_in: number | null;
826
+ fan_out: number | null;
827
+ cohesion: number | null;
828
+ file_count: number | null;
829
+ }[];
652
830
 
653
831
  const modules = dirs.map((d) => {
654
832
  // Get files inside this directory
655
- const files = db
656
- .prepare(`
833
+ const files = (
834
+ db
835
+ .prepare(`
657
836
  SELECT n.name FROM edges e
658
837
  JOIN nodes n ON e.target_id = n.id
659
838
  WHERE e.source_id = ? AND e.kind = 'contains' AND n.kind = 'file'
660
839
  `)
661
- .all(d.id)
662
- .map((f) => f.name);
840
+ .all(d.id) as { name: string }[]
841
+ ).map((f) => f.name);
663
842
 
664
843
  return {
665
844
  directory: d.name,
@@ -680,7 +859,7 @@ export function moduleBoundariesData(customDbPath, opts = {}) {
680
859
 
681
860
  // ─── Helpers ──────────────────────────────────────────────────────────
682
861
 
683
- function getSortFn(sortBy) {
862
+ function getSortFn(sortBy: string): (a: DirRow, b: DirRow) => number {
684
863
  switch (sortBy) {
685
864
  case 'cohesion':
686
865
  return (a, b) => (b.cohesion ?? -1) - (a.cohesion ?? -1);
@@ -690,8 +869,8 @@ function getSortFn(sortBy) {
690
869
  return (a, b) => (b.fan_out || 0) - (a.fan_out || 0);
691
870
  case 'density':
692
871
  return (a, b) => {
693
- const da = a.file_count > 0 ? (a.symbol_count || 0) / a.file_count : 0;
694
- const db_ = b.file_count > 0 ? (b.symbol_count || 0) / b.file_count : 0;
872
+ const da = (a.file_count ?? 0) > 0 ? (a.symbol_count || 0) / (a.file_count ?? 1) : 0;
873
+ const db_ = (b.file_count ?? 0) > 0 ? (b.symbol_count || 0) / (b.file_count ?? 1) : 0;
695
874
  return db_ - da;
696
875
  };
697
876
  default: