@ninebix/nmt-system 1.0.0

package/dist/src/storage/neuron-store.js

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+/**
+ * Neuron Store - Persistent storage for neurons and synapses
+ * @module storage/neuron-store
+ */
+import { Level } from 'level';
+import { generateUUID } from '../utils/uuid.js';
+import * as fs from 'fs/promises';
+import * as path from 'path';
+/**
+ * Neuron and Synapse Storage
+ */
+export class NeuronStore {
+    neuronDb;
+    synapseDb;
+    dataDir;
+    initialized = false;
+    constructor(options) {
+        this.dataDir = options.dataDir;
+        this.neuronDb = new Level(path.join(this.dataDir, 'neurons'), {
+            valueEncoding: 'json'
+        });
+        this.synapseDb = new Level(path.join(this.dataDir, 'synapses'), {
+            valueEncoding: 'json'
+        });
+    }
+    /**
+     * Initialize the store
+     */
+    async init() {
+        if (this.initialized)
+            return;
+        await fs.mkdir(this.dataDir, { recursive: true });
+        await this.neuronDb.open();
+        await this.synapseDb.open();
+        this.initialized = true;
+    }
+    /**
+     * Close the store
+     */
+    async close() {
+        if (!this.initialized)
+            return;
+        await this.neuronDb.close();
+        await this.synapseDb.close();
+        this.initialized = false;
+    }
+    // ==================== Neuron Operations ====================
+    /**
+     * Create and store a new neuron
+     */
+    async createNeuron(input) {
+        this.ensureInitialized();
+        const now = new Date().toISOString();
+        const neuron = {
+            id: generateUUID(),
+            embedding: input.embedding,
+            chunkHashes: input.chunkHashes,
+            merkleRoot: input.merkleRoot,
+            metadata: {
+                createdAt: now,
+                updatedAt: now,
+                accessCount: 0,
+                lastAccessed: now,
+                sourceType: input.sourceType ?? 'unknown',
+                tags: input.tags ?? []
+            },
+            outgoingSynapses: [],
+            incomingSynapses: []
+        };
+        await this.putNeuron(neuron);
+        return neuron;
+    }
+    /**
+     * Store a neuron
+     */
+    async putNeuron(neuron) {
+        this.ensureInitialized();
+        const serialized = this.serializeNeuron(neuron);
+        await this.neuronDb.put(`neuron:${neuron.id}`, JSON.stringify(serialized));
+        // Index by merkle root for lookup
+        await this.neuronDb.put(`root:${neuron.merkleRoot}`, neuron.id);
+    }
+    /**
+     * Get a neuron by ID
+     */
+    async getNeuron(id) {
+        this.ensureInitialized();
+        try {
+            const value = await this.neuronDb.get(`neuron:${id}`);
+            const serialized = JSON.parse(value);
+            return this.deserializeNeuron(serialized);
+        }
+        catch (err) {
+            if (err.code === 'LEVEL_NOT_FOUND') {
+                return null;
+            }
+            throw err;
+        }
+    }
+    /**
+     * Get neuron by Merkle root
+     */
+    async getNeuronByMerkleRoot(merkleRoot) {
+        this.ensureInitialized();
+        try {
+            const id = await this.neuronDb.get(`root:${merkleRoot}`);
+            return this.getNeuron(id);
+        }
+        catch (err) {
+            if (err.code === 'LEVEL_NOT_FOUND') {
+                return null;
+            }
+            throw err;
+        }
+    }
+    /**
+     * Update a neuron
+     */
+    async updateNeuron(id, updates) {
+        this.ensureInitialized();
+        const neuron = await this.getNeuron(id);
+        if (!neuron)
+            return null;
+        const updated = {
+            ...neuron,
+            ...updates,
+            id: neuron.id, // Preserve ID
+            metadata: {
+                ...neuron.metadata,
+                ...updates.metadata,
+                updatedAt: new Date().toISOString()
+            }
+        };
+        await this.putNeuron(updated);
+        return updated;
+    }
+    /**
+     * Delete a neuron and its synapses
+     */
+    async deleteNeuron(id) {
+        this.ensureInitialized();
+        const neuron = await this.getNeuron(id);
+        if (!neuron)
+            return false;
+        // Delete all outgoing synapses
+        for (const synapseId of neuron.outgoingSynapses) {
+            await this.deleteSynapse(synapseId);
+        }
+        // Delete all incoming synapses
+        for (const synapseId of neuron.incomingSynapses) {
+            await this.deleteSynapse(synapseId);
+        }
+        // Delete neuron
+        await this.neuronDb.del(`neuron:${id}`);
+        await this.neuronDb.del(`root:${neuron.merkleRoot}`);
+        return true;
+    }
+    /**
+     * Record an access to a neuron
+     */
+    async recordAccess(id) {
+        this.ensureInitialized();
+        const neuron = await this.getNeuron(id);
+        if (!neuron)
+            return;
+        neuron.metadata.accessCount++;
+        neuron.metadata.lastAccessed = new Date().toISOString();
+        await this.putNeuron(neuron);
+    }
+    /**
+     * Get all neuron IDs
+     */
+    async getAllNeuronIds() {
+        this.ensureInitialized();
+        const ids = [];
+        for await (const key of this.neuronDb.keys()) {
+            if (key.startsWith('neuron:')) {
+                ids.push(key.slice(7));
+            }
+        }
+        return ids;
+    }
+    /**
+     * Get neuron count
+     */
+    async getNeuronCount() {
+        this.ensureInitialized();
+        let count = 0;
+        for await (const key of this.neuronDb.keys()) {
+            if (key.startsWith('neuron:')) {
+                count++;
+            }
+        }
+        return count;
+    }
+    // ==================== Synapse Operations ====================
+    /**
+     * Create a synapse between two neurons
+     */
+    async createSynapse(sourceId, targetId, type, weight = 1.0, bidirectional = false) {
+        this.ensureInitialized();
+        // Verify both neurons exist
+        const source = await this.getNeuron(sourceId);
+        const target = await this.getNeuron(targetId);
+        if (!source || !target)
+            return null;
+        const now = new Date().toISOString();
+        const synapse = {
+            id: generateUUID(),
+            sourceId,
+            targetId,
+            type,
+            weight,
+            metadata: {
+                createdAt: now,
+                updatedAt: now,
+                activationCount: 0,
+                lastActivated: now,
+                bidirectional
+            }
+        };
+        // Store synapse
+        await this.putSynapse(synapse);
+        // Update neuron connections
+        source.outgoingSynapses.push(synapse.id);
+        target.incomingSynapses.push(synapse.id);
+        await this.putNeuron(source);
+        await this.putNeuron(target);
+        // Create reverse synapse if bidirectional
+        if (bidirectional) {
+            const reverseSynapse = {
+                id: generateUUID(),
+                sourceId: targetId,
+                targetId: sourceId,
+                type,
+                weight,
+                metadata: {
+                    createdAt: now,
+                    updatedAt: now,
+                    activationCount: 0,
+                    lastActivated: now,
+                    bidirectional: true
+                }
+            };
+            await this.putSynapse(reverseSynapse);
+            target.outgoingSynapses.push(reverseSynapse.id);
+            source.incomingSynapses.push(reverseSynapse.id);
+            await this.putNeuron(source);
+            await this.putNeuron(target);
+        }
+        return synapse;
+    }
+    /**
+     * Store a synapse
+     */
+    async putSynapse(synapse) {
+        this.ensureInitialized();
+        const serialized = this.serializeSynapse(synapse);
+        await this.synapseDb.put(`synapse:${synapse.id}`, JSON.stringify(serialized));
+        // Index by source and target
+        await this.synapseDb.put(`source:${synapse.sourceId}:${synapse.id}`, synapse.id);
+        await this.synapseDb.put(`target:${synapse.targetId}:${synapse.id}`, synapse.id);
+    }
+    /**
+     * Get a synapse by ID
+     */
+    async getSynapse(id) {
+        this.ensureInitialized();
+        try {
+            const value = await this.synapseDb.get(`synapse:${id}`);
+            const serialized = JSON.parse(value);
+            return this.deserializeSynapse(serialized);
+        }
+        catch (err) {
+            if (err.code === 'LEVEL_NOT_FOUND') {
+                return null;
+            }
+            throw err;
+        }
+    }
+    /**
+     * Get all synapses from a neuron
+     */
+    async getOutgoingSynapses(neuronId) {
+        this.ensureInitialized();
+        const synapses = [];
+        for await (const [key] of this.synapseDb.iterator()) {
+            if (key.startsWith(`source:${neuronId}:`)) {
+                const synapseId = key.split(':')[2];
+                const synapse = await this.getSynapse(synapseId);
+                if (synapse)
+                    synapses.push(synapse);
+            }
+        }
+        return synapses;
+    }
+    /**
+     * Get all synapses to a neuron
+     */
+    async getIncomingSynapses(neuronId) {
+        this.ensureInitialized();
+        const synapses = [];
+        for await (const [key] of this.synapseDb.iterator()) {
+            if (key.startsWith(`target:${neuronId}:`)) {
+                const synapseId = key.split(':')[2];
+                const synapse = await this.getSynapse(synapseId);
+                if (synapse)
+                    synapses.push(synapse);
+            }
+        }
+        return synapses;
+    }
+    /**
+     * Update synapse weight
+     */
+    async updateSynapseWeight(id, weight) {
+        this.ensureInitialized();
+        const synapse = await this.getSynapse(id);
+        if (!synapse)
+            return null;
+        synapse.weight = weight;
+        synapse.metadata.updatedAt = new Date().toISOString();
+        await this.putSynapse(synapse);
+        return synapse;
+    }
+    /**
+     * Record synapse activation
+     */
+    async recordSynapseActivation(id) {
+        this.ensureInitialized();
+        const synapse = await this.getSynapse(id);
+        if (!synapse)
+            return;
+        synapse.metadata.activationCount++;
+        synapse.metadata.lastActivated = new Date().toISOString();
+        await this.putSynapse(synapse);
+    }
+    /**
+     * Delete a synapse
+     */
+    async deleteSynapse(id) {
+        this.ensureInitialized();
+        const synapse = await this.getSynapse(id);
+        if (!synapse)
+            return false;
+        // Remove from indices
+        await this.synapseDb.del(`synapse:${id}`);
+        await this.synapseDb.del(`source:${synapse.sourceId}:${id}`);
+        await this.synapseDb.del(`target:${synapse.targetId}:${id}`);
+        // Update neurons
+        const source = await this.getNeuron(synapse.sourceId);
+        const target = await this.getNeuron(synapse.targetId);
+        if (source) {
+            source.outgoingSynapses = source.outgoingSynapses.filter(s => s !== id);
+            await this.putNeuron(source);
+        }
+        if (target) {
+            target.incomingSynapses = target.incomingSynapses.filter(s => s !== id);
+            await this.putNeuron(target);
+        }
+        return true;
+    }
+    /**
+     * Get synapse count
+     */
+    async getSynapseCount() {
+        this.ensureInitialized();
+        let count = 0;
+        for await (const key of this.synapseDb.keys()) {
+            if (key.startsWith('synapse:')) {
+                count++;
+            }
+        }
+        return count;
+    }
+    /**
+     * Find neurons similar to a given embedding
+     */
+    async findSimilar(embedding, k) {
+        this.ensureInitialized();
+        const results = [];
+        for await (const [key, value] of this.neuronDb.iterator()) {
+            if (!key.startsWith('neuron:'))
+                continue;
+            try {
+                const serialized = JSON.parse(value);
+                const neuronEmbedding = new Float32Array(serialized.embedding);
+                // Calculate cosine similarity
+                let dotProduct = 0;
+                let normA = 0;
+                let normB = 0;
+                for (let i = 0; i < embedding.length; i++) {
+                    dotProduct += embedding[i] * neuronEmbedding[i];
+                    normA += embedding[i] * embedding[i];
+                    normB += neuronEmbedding[i] * neuronEmbedding[i];
+                }
+                const similarity = dotProduct / (Math.sqrt(normA) * Math.sqrt(normB));
+                results.push({
+                    neuron: this.deserializeNeuron(serialized),
+                    similarity,
+                });
+            }
+            catch {
+                // Skip invalid entries
+            }
+        }
+        // Sort by similarity and return top k
+        results.sort((a, b) => b.similarity - a.similarity);
+        return results.slice(0, k).map(r => r.neuron);
+    }
+    // ==================== Serialization ====================
+    serializeNeuron(neuron) {
+        return {
+            id: neuron.id,
+            embedding: Array.from(neuron.embedding),
+            chunkHashes: neuron.chunkHashes,
+            merkleRoot: neuron.merkleRoot,
+            metadata: neuron.metadata,
+            outgoingSynapses: neuron.outgoingSynapses,
+            incomingSynapses: neuron.incomingSynapses
+        };
+    }
+    deserializeNeuron(data) {
+        return {
+            id: data.id,
+            embedding: new Float32Array(data.embedding),
+            chunkHashes: data.chunkHashes,
+            merkleRoot: data.merkleRoot,
+            metadata: data.metadata,
+            outgoingSynapses: data.outgoingSynapses,
+            incomingSynapses: data.incomingSynapses
+        };
+    }
+    serializeSynapse(synapse) {
+        return {
+            id: synapse.id,
+            sourceId: synapse.sourceId,
+            targetId: synapse.targetId,
+            type: synapse.type,
+            weight: synapse.weight,
+            metadata: synapse.metadata
+        };
+    }
+    deserializeSynapse(data) {
+        return {
+            id: data.id,
+            sourceId: data.sourceId,
+            targetId: data.targetId,
+            type: data.type,
+            weight: data.weight,
+            metadata: data.metadata
+        };
+    }
+    ensureInitialized() {
+        if (!this.initialized) {
+            throw new Error('NeuronStore not initialized. Call init() first.');
+        }
+    }
+}
+/**
+ * Create a NeuronStore instance
+ */
+export function createNeuronStore(options) {
+    return new NeuronStore(options);
+}
+//# sourceMappingURL=neuron-store.js.map

package/dist/src/storage/neuron-store.js.map

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package/dist/src/storage/probabilistic-store.d.ts

@@ -0,0 +1,104 @@
+/**
+ * Probabilistic Store - Persistent storage for probabilistic ontology modules
+ *
+ * Handles persistence for:
+ * - AttractorModel (미래 끌개)
+ * - FourStageLearningSystem (4단계 학습)
+ * - ProbabilisticNeuronManager (확률적 뉴런)
+ * - DynamicEmbeddingManager (동적 차원)
+ *
+ * @module storage/probabilistic-store
+ */
+export interface ProbabilisticStoreOptions {
+    dataDir: string;
+}
+/**
+ * Unified storage for all probabilistic ontology modules
+ */
+export declare class ProbabilisticStore {
+    private db;
+    private dataDir;
+    private initialized;
+    private static readonly KEYS;
+    constructor(options: ProbabilisticStoreOptions);
+    /**
+     * Initialize store
+     */
+    init(): Promise<void>;
+    /**
+     * Close store
+     */
+    close(): Promise<void>;
+    /**
+     * Save attractor model state
+     */
+    saveAttractors(data: object): Promise<void>;
+    /**
+     * Load attractor model state
+     */
+    loadAttractors(): Promise<object | null>;
+    /**
+     * Save learning system state
+     */
+    saveLearning(data: object): Promise<void>;
+    /**
+     * Load learning system state
+     */
+    loadLearning(): Promise<object | null>;
+    /**
+     * Save probabilistic neurons state
+     */
+    saveNeurons(data: object): Promise<void>;
+    /**
+     * Load probabilistic neurons state
+     */
+    loadNeurons(): Promise<object | null>;
+    /**
+     * Save dynamic dimensions state
+     */
+    saveDimensions(data: object): Promise<void>;
+    /**
+     * Load dynamic dimensions state
+     */
+    loadDimensions(): Promise<object | null>;
+    /**
+     * Save all probabilistic module states
+     */
+    saveAll(states: {
+        attractors?: object;
+        learning?: object;
+        neurons?: object;
+        dimensions?: object;
+    }): Promise<void>;
+    /**
+     * Load all probabilistic module states
+     */
+    loadAll(): Promise<{
+        attractors: object | null;
+        learning: object | null;
+        neurons: object | null;
+        dimensions: object | null;
+    }>;
+    /**
+     * Clear all probabilistic data
+     */
+    clear(): Promise<void>;
+    private updateMeta;
+    getMeta(): Promise<{
+        version: string;
+        createdAt: string;
+        lastUpdated: string;
+    }>;
+    /**
+     * Get storage statistics
+     */
+    getStats(): Promise<{
+        hasAttractors: boolean;
+        hasLearning: boolean;
+        hasNeurons: boolean;
+        hasDimensions: boolean;
+        lastUpdated: string;
+    }>;
+}
+export declare function createProbabilisticStore(options: ProbabilisticStoreOptions): ProbabilisticStore;
+//# sourceMappingURL=probabilistic-store.d.ts.map

package/dist/src/storage/probabilistic-store.d.ts.map

@@ -0,0 +1 @@
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