@nfdi4plants/arctrl 3.2.3 → 3.3.1

package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.js

@@ -1,5 +1,5 @@
 import { indexed, map, choose, initialize, maxBy, tryPick, fold, iterate, isEmpty, length, tryItem, delay, append as append$1 } from '../../../node_modules/@fable-org/fable-library-ts/Seq.js';
-import { value, defaultArg } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { defaultArg } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { ofSeq, tryFind } from '../../../node_modules/@fable-org/fable-library-ts/Map.js';
 import { comparePrimitives, equals, Exception } from '../../../node_modules/@fable-org/fable-library-ts/Util.js';
 import { DataType } from '../../fable_modules/FsSpreadsheet.7.0.1/Cells/FsCell.fs.js';
@@ -28,7 +28,7 @@ function SparseRowModule_fromAllValues(v) {
   return choose((tupledArg) => {
     const option = tupledArg[1];
     if (option != null) {
-      return [tupledArg[0], value(option)];
+      return [tupledArg[0], option];
     } else {
       return void 0;
     }
@@ -133,9 +133,9 @@ function SparseRowModule_toDSLRow(vs) {
           }
         }
       }
-      return SheetEntity$1_some_2B595(singleton(c_1[1] == null ? RowElement_UnindexedCell(c_1[0]) : RowElement_IndexedCell(new ColumnIndex(value(c_1[1])), c_1[0])));
+      return SheetEntity$1_some_2B595(singleton(c_1[1] == null ? RowElement_UnindexedCell(c_1[0]) : RowElement_IndexedCell(new ColumnIndex(c_1[1]), c_1[0])));
     } else {
-      const v_1 = value(v);
+      const v_1 = v;
       let c;
       const this$_2 = CellBuilder__AsCellElement_6F87C2ED(CellBuilder_$ctor(), SheetEntity$1_some_2B595(singleton([DataType.String$, v_1])));
       let matchResult_2 = void 0, errs = void 0, f = void 0, ms_2 = void 0;
@@ -203,7 +203,7 @@ function SparseRowModule_toDSLRow(vs) {
           }
         }
       }
-      return SheetEntity$1_some_2B595(singleton(c[1] == null ? RowElement_UnindexedCell(c[0]) : RowElement_IndexedCell(new ColumnIndex(value(c[1])), c[0])));
+      return SheetEntity$1_some_2B595(singleton(c[1] == null ? RowElement_UnindexedCell(c[0]) : RowElement_IndexedCell(new ColumnIndex(c[1]), c[0])));
     }
   }, SparseRowModule_getAllValues(vs));
   this$_9 = fold((state, we) => RowBuilder__Combine_19F30600(builder$0040, state, we), RowBuilder_get_Empty(), ns);
@@ -331,7 +331,7 @@ function SparseTable_AddComment(key, values, matrix) {
 }
 function SparseTable_FromRows_Z5579EC29(en, labels, lineNumber, prefix) {
   try {
-    const prefix_1 = prefix == null ? "" : value(prefix) + " ";
+    const prefix_1 = prefix == null ? "" : prefix + " ";
     const loop = (matrix_mut, remarks_mut, lineNumber_1_mut) => {
       loop:
         while (true) {
@@ -341,17 +341,17 @@ function SparseTable_FromRows_Z5579EC29(en, labels, lineNumber, prefix) {
             const row = map((tupledArg) => [tupledArg[0] - 1, tupledArg[1]], en["System.Collections.Generic.IEnumerator`1.get_Current"]());
             let matchValue;
             const option_1 = tryItem(0, row);
-            matchValue = option_1 != null ? value(option_1)[1] : void 0;
+            matchValue = option_1 != null ? option_1[1] : void 0;
             const vals = Seq_trySkip(1, row);
             const key = matchValue;
             let matchResult = void 0, k = void 0, v_1 = void 0;
             if (key != null) {
-              const activePatternResult = Comment_$007CComment$007C_$007C(value(key));
+              const activePatternResult = Comment_$007CComment$007C_$007C(key);
               if (activePatternResult != null) {
                 if (vals != null) {
                   matchResult = 0;
-                  k = value(activePatternResult);
-                  v_1 = value(vals);
+                  k = activePatternResult;
+                  v_1 = vals;
                 } else {
                   matchResult = 1;
                 }
@@ -373,20 +373,20 @@ function SparseTable_FromRows_Z5579EC29(en, labels, lineNumber, prefix) {
                 const activePatternResult_1 = Remark_$007CRemark$007C_$007C(key);
                 if (activePatternResult_1 != null) {
                   matchResult_1 = 0;
-                  k_2 = value(activePatternResult_1);
+                  k_2 = activePatternResult_1;
                 } else if (key != null) {
                   if (vals != null) {
-                    if (value(vals), k_1 = value(key), exists((label) => k_1 === prefix_1 + label, labels)) {
+                    if (vals, k_1 = key, exists((label) => k_1 === prefix_1 + label, labels)) {
                       matchResult_1 = 1;
-                      k_3 = value(key);
-                      v_3 = value(vals);
+                      k_3 = key;
+                      v_3 = vals;
                     } else {
                       matchResult_1 = 2;
-                      k_4 = value(key);
+                      k_4 = key;
                     }
                   } else {
                     matchResult_1 = 2;
-                    k_4 = value(key);
+                    k_4 = key;
                   }
                 } else {
                   matchResult_1 = 3;
@@ -424,7 +424,7 @@ function SparseTable_FromRows_Z5579EC29(en, labels, lineNumber, prefix) {
   }
 }
 function SparseTable_ToRows_759CAFC1(matrix, prefix) {
-  const prefix_1 = prefix == null ? "" : value(prefix) + " ";
+  const prefix_1 = prefix == null ? "" : prefix + " ";
   return delay(() => append$1(map((key) => SparseRowModule_fromValues(cons(prefix_1 + key, initialize$1(matrix.ColumnCount - 1, (i) => SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [key, i + 1])))), matrix.Keys), delay(() => map((key_1) => SparseRowModule_fromValues(cons(Comment_wrapCommentKey(key_1), initialize$1(matrix.ColumnCount - 1, (i_1) => SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [key_1, i_1 + 1])))), matrix.CommentKeys))));
 }
 function SparseTable_GetEmptyComments_3ECCA699(matrix) {

package/dist/ts/ts/Spreadsheet/Metadata/Study.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Study.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/Metadata/Study.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAE,MAAM,sCAAsC,CAAC;AAC9D,OAAO,EAAqD,UAAU,EAAE,MAAM,qCAAqC,CAAC;AACpH,OAAO,EAAE,MAAM,EAAwB,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AAC/E,OAAO,EAAE,WAAW,EAAc,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAC1F,OAAO,EAAuC,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAE1G,OAAO,EAAyH,WAAW,EAA4C,MAAM,kBAAkB,CAAC;AAChN,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAG7D,OAAO,EAAoB,MAAM,EAAc,MAAM,uCAAuC,CAAC;AAG7F,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,2BAA2B,CAAC;AACxD,OAAO,EAAE,MAAM,EAAE,MAAM,sBAAsB,CAAC;AAC9C,OAAO,EAAE,kBAAkB,EAAE,MAAM,kCAAkC,CAAC;AACtE,OAAO,EAAE,MAAM,EAAE,MAAM,8BAA8B,CAAC;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,gCAAgC,CAAC;AAY1D,qBAAa,SAAU,SAAQ,MAAO,YAAW,UAAU,CAAC,SAAS,CAAC;IAClE,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,QAAQ,CAAC,cAAc,EAAE,MAAM,CAAC;IAChC,QAAQ,CAAC,iBAAiB,EAAE,MAAM,CAAC;IACnC,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC;gBAC5B,UAAU,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC;CAU1K;AAED,wBAAgB,qBAAqB,IAAI,QAAQ,CAEhD;AAED,wBAAgB,gBAAgB,CAAC,UAAU,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,GAAG,SAAS,CAEvM;AAED,wBAAgB,oBAAoB,IAAI,UAAU,CAAC,MAAM,CAAC,CAEzD;AAED,wBAAgB,kCAAkC,CAAC,MAAM,EAAE,WAAW,GAAG,SAAS,CAGjF;AAED,wBAAgB,gCAAgC,CAAC,KAAK,EAAE,QAAQ,GAAG,WAAW,CAkB7E;AAED,wBAAgB,kBAAkB,CAAC,UAAU,EAAE,KAAK,EAAE,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,SAAS,CAAC,CAG1J;AAED,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAE9F;AAED;;GAEG;AACH,wBAAgB,SAAS,CAAC,SAAS,EAAE,SAAS,EAAE,iBAAiB,EAAE,UAAU,CAAC,kBAAkB,CAAC,EAAE,YAAY,EAAE,UAAU,CAAC,WAAW,CAAC,EAAE,OAAO,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,UAAU,CAAC,QAAQ,CAAC,EAAE,SAAS,EAAE,UAAU,CAAC,QAAQ,CAAC,EAAE,QAAQ,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CAmB5S;AAED,wBAAgB,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,EAAE,WAAW,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CA6I7K;AAED,wBAAgB,MAAM,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAKjH"}
+{"version":3,"file":"Study.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/Metadata/Study.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAE,MAAM,sCAAsC,CAAC;AAC9D,OAAO,EAAqD,UAAU,EAAE,MAAM,qCAAqC,CAAC;AACpH,OAAO,EAAE,MAAM,EAAwB,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AAC/E,OAAO,EAAE,WAAW,EAAc,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAC1F,OAAO,EAAuC,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAE1G,OAAO,EAAyH,WAAW,EAA4C,MAAM,kBAAkB,CAAC;AAChN,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAG7D,OAAO,EAAE,MAAM,EAAc,MAAM,uCAAuC,CAAC;AAG3E,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,2BAA2B,CAAC;AACxD,OAAO,EAAE,MAAM,EAAE,MAAM,sBAAsB,CAAC;AAC9C,OAAO,EAAE,kBAAkB,EAAE,MAAM,kCAAkC,CAAC;AACtE,OAAO,EAAE,MAAM,EAAE,MAAM,8BAA8B,CAAC;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,gCAAgC,CAAC;AAY1D,qBAAa,SAAU,SAAQ,MAAO,YAAW,UAAU,CAAC,SAAS,CAAC;IAClE,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,QAAQ,CAAC,cAAc,EAAE,MAAM,CAAC;IAChC,QAAQ,CAAC,iBAAiB,EAAE,MAAM,CAAC;IACnC,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC;gBAC5B,UAAU,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC;CAU1K;AAED,wBAAgB,qBAAqB,IAAI,QAAQ,CAEhD;AAED,wBAAgB,gBAAgB,CAAC,UAAU,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,GAAG,SAAS,CAEvM;AAED,wBAAgB,oBAAoB,IAAI,UAAU,CAAC,MAAM,CAAC,CAEzD;AAED,wBAAgB,kCAAkC,CAAC,MAAM,EAAE,WAAW,GAAG,SAAS,CAGjF;AAED,wBAAgB,gCAAgC,CAAC,KAAK,EAAE,QAAQ,GAAG,WAAW,CAkB7E;AAED,wBAAgB,kBAAkB,CAAC,UAAU,EAAE,KAAK,EAAE,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,SAAS,CAAC,CAG1J;AAED,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAE9F;AAED;;GAEG;AACH,wBAAgB,SAAS,CAAC,SAAS,EAAE,SAAS,EAAE,iBAAiB,EAAE,UAAU,CAAC,kBAAkB,CAAC,EAAE,YAAY,EAAE,UAAU,CAAC,WAAW,CAAC,EAAE,OAAO,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,UAAU,CAAC,QAAQ,CAAC,EAAE,SAAS,EAAE,UAAU,CAAC,QAAQ,CAAC,EAAE,QAAQ,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CAmB5S;AAED,wBAAgB,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,EAAE,WAAW,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CA6I7K;AAED,wBAAgB,MAAM,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAKjH"}

package/dist/ts/ts/Spreadsheet/Metadata/Study.js

@@ -7,7 +7,7 @@ import { Comment_fromString, Comment_addToMatrix } from './Comment.js';
 import { SparseTable__TryGetValueDefault_5BAE6133, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1, SparseRowModule_fromValues } from './SparseTable.js';
 import { createMissingIdentifier, Study_fileNameFromIdentifier } from '../../Core/Helper/Identifier.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-ts/MapUtil.js';
-import { defaultArg, value } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { defaultArg } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { ResizeArray_iter, Option_fromValueWithDefault } from '../../Core/Helper/Collections.js';
 import { List_distinct } from '../../../node_modules/@fable-org/fable-library-ts/Seq2.js';
 import { ArcStudy } from '../../Core/ArcTypes.js';
@@ -98,35 +98,35 @@ function fromRows(lineNumber, en) {
         const lastLine = lastLine_mut, studyInfo = studyInfo_mut, designDescriptors = designDescriptors_mut, publications = publications_mut, factors = factors_mut, assays = assays_mut, protocols = protocols_mut, contacts = contacts_mut, remarks = remarks_mut, lineNumber_1 = lineNumber_1_mut;
         let matchResult = void 0, k_6 = void 0, k_7 = void 0, k_8 = void 0, k_9 = void 0, k_10 = void 0, k_11 = void 0, k_12 = void 0;
         if (lastLine != null) {
-          switch (value(lastLine)) {
+          switch (lastLine) {
             case "STUDY DESIGN DESCRIPTORS": {
               matchResult = 0;
-              k_6 = value(lastLine);
+              k_6 = lastLine;
               break;
             }
             case "STUDY PUBLICATIONS": {
               matchResult = 1;
-              k_7 = value(lastLine);
+              k_7 = lastLine;
               break;
             }
             case "STUDY FACTORS": {
               matchResult = 2;
-              k_8 = value(lastLine);
+              k_8 = lastLine;
               break;
             }
             case "STUDY ASSAYS": {
               matchResult = 3;
-              k_9 = value(lastLine);
+              k_9 = lastLine;
               break;
             }
             case "STUDY PROTOCOLS": {
               matchResult = 4;
-              k_10 = value(lastLine);
+              k_10 = lastLine;
               break;
             }
             case "STUDY CONTACTS": {
               matchResult = 5;
-              k_11 = value(lastLine);
+              k_11 = lastLine;
               break;
             }
             default: {

package/dist/ts/ts/Spreadsheet/Metadata/Workflow.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Workflow.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/Metadata/Workflow.ts"],"names":[],"mappings":"AACA,OAAO,EAA6C,UAAU,EAAW,MAAM,qCAAqC,CAAC;AACrH,OAAO,EAAsB,MAAM,EAAS,MAAM,uCAAuC,CAAC;AAO1F,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AACrD,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AAEzD,OAAO,EAA6F,WAAW,EAA+E,MAAM,kBAAkB,CAAC;AACvN,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAI7D,OAAO,EAAE,WAAW,EAAc,MAAM,qCAAqC,CAAC;AAE9E,eAAO,MAAM,eAAe,eAAe,CAAC;AAE5C,eAAO,MAAM,UAAU,UAAU,CAAC;AAElC,eAAO,MAAM,gBAAgB,gBAAgB,CAAC;AAE9C,eAAO,MAAM,iBAAiB,SAAS,CAAC;AAExC,eAAO,MAAM,4BAA4B,+BAA+B,CAAC;AAEzE,eAAO,MAAM,sBAAsB,yBAAyB,CAAC;AAE7D,eAAO,MAAM,2BAA2B,6BAA6B,CAAC;AAEtE,eAAO,MAAM,QAAQ,QAAQ,CAAC;AAE9B,eAAO,MAAM,YAAY,YAAY,CAAC;AAEtC,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD,eAAO,MAAM,kCAAkC,qCAAqC,CAAC;AAErF,eAAO,MAAM,4BAA4B,+BAA+B,CAAC;AAEzE,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD,eAAO,MAAM,sCAAsC,0CAA0C,CAAC;AAE9F,eAAO,MAAM,gCAAgC,oCAAoC,CAAC;AAElF,eAAO,MAAM,aAAa,cAAc,CAAC;AAEzC,eAAO,MAAM,MAAM,EAAE,UAAU,CAAC,MAAM,CAAoZ,CAAC;AAE3b,wBAAgB,UAAU,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,WAAW,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,YAAY,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,+BAA+B,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,yBAAyB,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,sBAAsB,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,cAAc,EAAE,MAAM,EAAE,6BAA6B,EAAE,MAAM,EAAE,uBAAuB,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,iCAAiC,EAAE,MAAM,EAAE,2BAA2B,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,QAAQ,EAAE,GAAG,WAAW,CAiCtlB;AAED,wBAAgB,eAAe,CAAC,MAAM,EAAE,WAAW,GAAG,WAAW,CAGhE;AAED,wBAAgB,aAAa,CAAC,QAAQ,EAAE,WAAW,GAAG,WAAW,CAmChE;AAED,wBAAgB,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAE,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,WAAW,CAAC,CAGlJ;AAED,wBAAgB,MAAM,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAEjF"}
+{"version":3,"file":"Workflow.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/Metadata/Workflow.ts"],"names":[],"mappings":"AACA,OAAO,EAA6C,UAAU,EAAW,MAAM,qCAAqC,CAAC;AAErH,OAAO,EAAsB,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAMnF,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AACrD,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AAEzD,OAAO,EAA6F,WAAW,EAA+E,MAAM,kBAAkB,CAAC;AACvN,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAI7D,OAAO,EAAE,WAAW,EAAc,MAAM,qCAAqC,CAAC;AAE9E,eAAO,MAAM,eAAe,eAAe,CAAC;AAE5C,eAAO,MAAM,UAAU,UAAU,CAAC;AAElC,eAAO,MAAM,gBAAgB,gBAAgB,CAAC;AAE9C,eAAO,MAAM,iBAAiB,SAAS,CAAC;AAExC,eAAO,MAAM,4BAA4B,+BAA+B,CAAC;AAEzE,eAAO,MAAM,sBAAsB,yBAAyB,CAAC;AAE7D,eAAO,MAAM,2BAA2B,6BAA6B,CAAC;AAEtE,eAAO,MAAM,QAAQ,QAAQ,CAAC;AAE9B,eAAO,MAAM,YAAY,YAAY,CAAC;AAEtC,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD,eAAO,MAAM,kCAAkC,qCAAqC,CAAC;AAErF,eAAO,MAAM,4BAA4B,+BAA+B,CAAC;AAEzE,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD,eAAO,MAAM,sCAAsC,0CAA0C,CAAC;AAE9F,eAAO,MAAM,gCAAgC,oCAAoC,CAAC;AAElF,eAAO,MAAM,aAAa,cAAc,CAAC;AAEzC,eAAO,MAAM,MAAM,EAAE,UAAU,CAAC,MAAM,CAAoZ,CAAC;AAE3b,wBAAgB,UAAU,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,WAAW,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,YAAY,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,+BAA+B,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,yBAAyB,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,sBAAsB,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,cAAc,EAAE,MAAM,EAAE,6BAA6B,EAAE,MAAM,EAAE,uBAAuB,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,iCAAiC,EAAE,MAAM,EAAE,2BAA2B,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,QAAQ,EAAE,GAAG,WAAW,CAiCtlB;AAED,wBAAgB,eAAe,CAAC,MAAM,EAAE,WAAW,GAAG,WAAW,CAGhE;AAED,wBAAgB,aAAa,CAAC,QAAQ,EAAE,WAAW,GAAG,WAAW,CAmChE;AAED,wBAAgB,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAE,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,WAAW,CAAC,CAGlJ;AAED,wBAAgB,MAAM,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAEjF"}

package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js

@@ -1,6 +1,6 @@
 import { ofArray, map as map$1, empty, ofSeq, cons, reverse } from '../../../node_modules/@fable-org/fable-library-ts/List.js';
-import { value, unwrap, defaultArg } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { map } from '../../../node_modules/@fable-org/fable-library-ts/Seq.js';
+import { unwrap, defaultArg } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
 import { Option_fromValueWithDefault, ResizeArray_iter } from '../../Core/Helper/Collections.js';
 import { OntologyAnnotation_fromAggregatedStrings, Component_fromAggregatedStrings, OntologyAnnotation_toAggregatedStrings, Component_toAggregatedStrings } from './Conversions.js';
@@ -36,7 +36,7 @@ function fromString(identifier, title, description, workflowType, workflowTypeTe
   if (subworkflowIdentifiers == null) {
     subworkflowIdentifiers_2 = [];
   } else {
-    const subworkflowIdentifiers_1 = value(subworkflowIdentifiers);
+    const subworkflowIdentifiers_1 = subworkflowIdentifiers;
     const collection = map((s) => s.trim(), subworkflowIdentifiers_1.split(";"));
     subworkflowIdentifiers_2 = Array.from(collection);
   }
@@ -54,11 +54,11 @@ function fromString(identifier, title, description, workflowType, workflowTypeTe
     if (fileName == null) {
       identifier_4 = createMissingIdentifier();
     } else {
-      const matchValue = Workflow_tryIdentifierFromFileName(value(fileName));
-      identifier_4 = matchValue != null ? value(matchValue) : createMissingIdentifier();
+      const matchValue = Workflow_tryIdentifierFromFileName(fileName);
+      identifier_4 = matchValue != null ? matchValue : createMissingIdentifier();
     }
   } else {
-    identifier_4 = value(identifier);
+    identifier_4 = identifier;
   }
   return ArcWorkflow.make(identifier_4, title, description, workflowType_1, uri, version, subworkflowIdentifiers_2, parameters, components, void 0, [], void 0, comments);
 }

package/dist/ts/ts/WorkflowGraph/Adapters.d.ts

@@ -1,7 +1,7 @@
-import { Option } from '@fable-org/fable-library-ts/Option.ts';
 import { ArcRun, ArcWorkflow, ArcInvestigation } from '../Core/ArcTypes.ts';
 import { FSharpMap } from '@fable-org/fable-library-ts/Map.ts';
 import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
 import { WorkflowGraphIndex, WorkflowGraph, GraphBuildIssue } from './GraphTypes.ts';
 import { FSharpResult$2_$union } from '@fable-org/fable-library-ts/Result.ts';
 /**

package/dist/ts/ts/WorkflowGraph/Adapters.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Adapters.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/WorkflowGraph/Adapters.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAS,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAC5E,OAAO,EAAoB,SAAS,EAA2B,MAAM,oCAAoC,CAAC;AAG1G,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AAIvE,OAAO,EAAE,kBAAkB,EAAsC,aAAa,EAAE,eAAe,EAAoD,MAAM,iBAAiB,CAAC;AAG3K,OAAO,EAAE,qBAAqB,EAA4C,MAAM,uCAAuC,CAAC;AAExH;;GAEG;AACH,wBAAgB,gCAAgC,CAAC,aAAa,EAAE,MAAM,CAAC,gBAAgB,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,wBAAwB,CAAC,CA8BrI;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,SAAS,CAAC,MAAM,EAAE,wBAAwB,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,CAAC,CAOhJ;AAED;;GAEG;AACH,wBAAgB,6BAA6B,CAAC,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,SAAS,EAAE,EAAE,GAAG,eAAe,CAEpG;AAED;;;;GAIG;AACH,wBAAgB,UAAU,CAAC,QAAQ,EAAE,WAAW,GAAG,qBAAqB,CAAC,aAAa,EAAE,eAAe,CAAC,CAUvG;AAED;;;;GAIG;AACH,wBAAgB,KAAK,CAAC,GAAG,EAAE,MAAM,GAAG,qBAAqB,CAAC,aAAa,EAAE,eAAe,CAAC,CAUxF;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAAC,aAAa,EAAE,gBAAgB,GAAG,kBAAkB,CAwBnF"}
+{"version":3,"file":"Adapters.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/WorkflowGraph/Adapters.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAC5E,OAAO,EAAoB,SAAS,EAA2B,MAAM,oCAAoC,CAAC;AAG1G,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AACvE,OAAO,EAAE,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAI/D,OAAO,EAAE,kBAAkB,EAAsC,aAAa,EAAE,eAAe,EAAoD,MAAM,iBAAiB,CAAC;AAG3K,OAAO,EAAE,qBAAqB,EAA4C,MAAM,uCAAuC,CAAC;AAExH;;GAEG;AACH,wBAAgB,gCAAgC,CAAC,aAAa,EAAE,MAAM,CAAC,gBAAgB,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,wBAAwB,CAAC,CA8BrI;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,SAAS,CAAC,MAAM,EAAE,wBAAwB,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,CAAC,CAOhJ;AAED;;GAEG;AACH,wBAAgB,6BAA6B,CAAC,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,SAAS,EAAE,EAAE,GAAG,eAAe,CAEpG;AAED;;;;GAIG;AACH,wBAAgB,UAAU,CAAC,QAAQ,EAAE,WAAW,GAAG,qBAAqB,CAAC,aAAa,EAAE,eAAe,CAAC,CAUvG;AAED;;;;GAIG;AACH,wBAAgB,KAAK,CAAC,GAAG,EAAE,MAAM,GAAG,qBAAqB,CAAC,aAAa,EAAE,eAAe,CAAC,CAUxF;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAAC,aAAa,EAAE,gBAAgB,GAAG,kBAAkB,CAwBnF"}

package/dist/ts/ts/WorkflowGraph/Adapters.js

@@ -1,4 +1,3 @@
-import { value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { ofSeq, empty as empty$1, isEmpty, tryFind } from '../../node_modules/@fable-org/fable-library-ts/Map.js';
 import { map, delay, append, collect, empty, singleton } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { normalizePathKey } from '../FileSystem/Path.js';
@@ -11,13 +10,13 @@ import { FSharpResult$2_Ok, FSharpResult$2_Error$ } from '../../node_modules/@fa
 
 function createCwlLookupFromInvestigation(investigation) {
   if (investigation != null) {
-    const inv = value(investigation);
+    const inv = investigation;
     return ofSeq(map((tupledArg) => [normalizePathKey(tupledArg[0]), tupledArg[1]], delay(() => append(collect((workflow) => {
       const matchValue = workflow.CWLDescription;
       if (matchValue == null) {
         return empty();
       } else {
-        const cwl = value(matchValue);
+        const cwl = matchValue;
         return singleton([Workflow_cwlFileNameFromIdentifier(workflow.Identifier), cwl]);
       }
     }, inv.Workflows), delay(() => collect((run) => {
@@ -25,7 +24,7 @@ function createCwlLookupFromInvestigation(investigation) {
       if (matchValue_1 == null) {
         return empty();
       } else {
-        const cwl_1 = value(matchValue_1);
+        const cwl_1 = matchValue_1;
         return singleton([Run_cwlFileNameFromIdentifier(run.Identifier), cwl_1]);
       }
     }, inv.Runs))))), {
@@ -51,7 +50,7 @@ function ofWorkflow(workflow) {
   let options_2 = void 0, options_1 = void 0;
   const matchValue = workflow.CWLDescription;
   if (matchValue != null) {
-    const processingUnit = value(matchValue);
+    const processingUnit = matchValue;
     return FSharpResult$2_Ok(buildWith((options_2 = (options_1 = WorkflowGraphBuildOptionsModule_withRootScope(workflow.Identifier, WorkflowGraphBuildOptionsModule_defaultOptions), WorkflowGraphBuildOptionsModule_withRootWorkflowFilePath(Workflow_cwlFileNameFromIdentifier(workflow.Identifier), options_1)), WorkflowGraphBuildOptionsModule_withTryResolveRunPath(createResolver(createCwlLookupFromInvestigation(workflow.Investigation)), options_2)), processingUnit));
   } else {
     return FSharpResult$2_Error$(createMissingDescriptionError(workflow.Identifier, "workflow"));
@@ -61,7 +60,7 @@ function ofRun(run) {
   let options_2 = void 0, options_1 = void 0;
   const matchValue = run.CWLDescription;
   if (matchValue != null) {
-    const processingUnit = value(matchValue);
+    const processingUnit = matchValue;
     return FSharpResult$2_Ok(buildWith((options_2 = (options_1 = WorkflowGraphBuildOptionsModule_withRootScope(run.Identifier, WorkflowGraphBuildOptionsModule_defaultOptions), WorkflowGraphBuildOptionsModule_withRootWorkflowFilePath(Run_cwlFileNameFromIdentifier(run.Identifier), options_1)), WorkflowGraphBuildOptionsModule_withTryResolveRunPath(createResolver(createCwlLookupFromInvestigation(run.Investigation)), options_2)), processingUnit));
   } else {
     return FSharpResult$2_Error$(createMissingDescriptionError(run.Identifier, "run"));

package/dist/ts/ts/WorkflowGraph/Builder.d.ts

@@ -1,19 +1,20 @@
 import { Record } from '@fable-org/fable-library-ts/Types.ts';
 import { PortDirection_$union, ProcessingUnitKind_$union, EdgeKind_$union, WorkflowGraphEdge, WorkflowGraphNode, GraphIssueKind_$union, WorkflowGraph } from './GraphTypes.ts';
 import { FSharpSet } from '@fable-org/fable-library-ts/Set.ts';
+import { FSharpList } from '@fable-org/fable-library-ts/List.ts';
+import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.ts';
 import { FSharpMap } from '@fable-org/fable-library-ts/Map.ts';
 import { WorkflowStep, WorkflowStepRun_$union } from '../CWL/WorkflowSteps.ts';
 import { WorkflowGraphBuildOptions } from './BuildOptions.ts';
 import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
 import { Option } from '@fable-org/fable-library-ts/Option.ts';
-import { IEquatable, MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { IComparable, IEquatable, MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
 import { DynamicObj } from '../fable_modules/DynamicObj.8.0.0/DynamicObj.fs.js';
-import { FSharpList } from '@fable-org/fable-library-ts/List.ts';
 import { CWLWorkflowDescription } from '../CWL/WorkflowDescription.ts';
 import { CWLToolDescription } from '../CWL/ToolDescription.ts';
 import { CWLExpressionToolDescription } from '../CWL/ExpressionToolDescription.ts';
 import { CWLOperationDescription } from '../CWL/OperationDescription.ts';
-import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.ts';
 /**
  * Internal mutable state tracking nodes and edges during graph building.
  */
@@ -22,10 +23,11 @@ export declare class BuildState extends Record {
     NodeIds: FSharpSet<string>;
     EdgeIds: FSharpSet<string>;
     RunResolutionStack: FSharpSet<string>;
+    ActiveWorkflows: FSharpList<CWLProcessingUnit_$union>;
     RunResolutionCache: FSharpMap<string, WorkflowStepRun_$union>;
     RunNodeCache: FSharpMap<string, string>;
     readonly Options: WorkflowGraphBuildOptions;
-    constructor(Graph: WorkflowGraph, NodeIds: FSharpSet<string>, EdgeIds: FSharpSet<string>, RunResolutionStack: FSharpSet<string>, RunResolutionCache: FSharpMap<string, WorkflowStepRun_$union>, RunNodeCache: FSharpMap<string, string>, Options: WorkflowGraphBuildOptions);
+    constructor(Graph: WorkflowGraph, NodeIds: FSharpSet<string>, EdgeIds: FSharpSet<string>, RunResolutionStack: FSharpSet<string>, ActiveWorkflows: FSharpList<CWLProcessingUnit_$union>, RunResolutionCache: FSharpMap<string, WorkflowStepRun_$union>, RunNodeCache: FSharpMap<string, string>, Options: WorkflowGraphBuildOptions);
 }
 export declare function BuildState_$reflection(): TypeInfo;
 /**
@@ -79,10 +81,27 @@ export declare function addProcessingUnitNode(state: BuildState, scope: string,
  * Creates and adds a port node (input or output) owned by a given node. Returns the node ID.
  */
 export declare function addPortNode(state: BuildState, ownerNodeId: string, direction: PortDirection_$union, portId: string, label: string): string;
+/**
+ * How the graph names a step. A step with an id is named by its id, read against the id of the workflow, as the step
+ * #main/first of a document that writes its ids in full is first. A step without an id is named by its position among
+ * the entries of the steps of the workflow, in a namespace apart from the ids of the other steps. The name is a place
+ * in the graph and no id of the step.
+ */
+export declare class StepIdentity extends Record implements IEquatable<StepIdentity>, IComparable<StepIdentity> {
+    readonly NodeId: string;
+    readonly Name: string;
+    readonly RunSegment: string;
+    constructor(NodeId: string, Name: string, RunSegment: string);
+}
+export declare function StepIdentity_$reflection(): TypeInfo;
+/**
+ * The identity of a step in the graph. The position is that of the entry among the steps of the workflow.
+ */
+export declare function stepIdentity(scope: string, workflowId: Option<string>, position: int32, step: WorkflowStep): StepIdentity;
 /**
  * Creates a step node for a CWL workflow step, adds a Contains edge from the workflow. Returns the step node ID.
  */
-export declare function addStepNode(state: BuildState, scope: string, workflowNodeId: string, step: WorkflowStep): string;
+export declare function addStepNode(state: BuildState, workflowNodeId: string, identity: StepIdentity, step: WorkflowStep): string;
 /**
  * Adds all input and output port nodes for a CWL workflow.
  */
@@ -143,7 +162,7 @@ export declare function buildRunNode(state: BuildState, runScope: string, stepNo
 /**
  * Connects step input ports to their sources (workflow inputs or other step outputs).
  */
-export declare function wireStepInputs(state: BuildState, scope: string, workflowNodeId: string, step: WorkflowStep): void;
+export declare function wireStepInputs(state: BuildState, scope: string, workflowNodeId: string, workflowId: Option<string>, identity: StepIdentity, step: WorkflowStep): void;
 /**
  * Connects workflow output ports to their sources (step outputs or workflow inputs).
  */

package/dist/ts/ts/WorkflowGraph/Builder.d.ts.map

@@ -1 +1 @@
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