@nfdi4plants/arctrl 3.2.3 → 3.3.1

package/dist/ts/ts/Json/ROCrate/LDGraph.js

@@ -1,5 +1,5 @@
 import { choose, isEmpty, length, head } from '../../../node_modules/@fable-org/fable-library-ts/List.js';
-import { value, unwrap } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { unwrap } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { ErrorReason$1_BadOneOf, ErrorReason$1_BadPrimitive } from '../../fable_modules/Thoth.Json.Core.0.9.1/Types.fs.js';
 import { toList, delay, append, singleton, collect, empty, map } from '../../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { tryInclude } from '../Encode.js';
@@ -15,7 +15,7 @@ function encoder(obj) {
   const values_2 = choose((tupledArg) => {
     const option_1 = tupledArg[1];
     if (option_1 != null) {
-      return [tupledArg[0], value(option_1)];
+      return [tupledArg[0], option_1];
     } else {
       return void 0;
     }

package/dist/ts/ts/Json/ROCrate/LDNode.js

@@ -9,7 +9,7 @@ import { DynamicObj } from '../../fable_modules/DynamicObj.8.0.0/DynamicObj.fs.j
 import { map, toList, delay, enumerateFromFunctions, append, singleton, empty, collect } from '../../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { list } from '../../fable_modules/Thoth.Json.Core.0.9.1/Encode.fs.js';
 import { encoder as encoder$3, decoder as decoder$1 } from './LDContext.js';
-import { value, unwrap } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { unwrap, value } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { FSharpResult$2_Ok, FSharpResult$2_Error$ } from '../../../node_modules/@fable-org/fable-library-ts/Result.js';
 import { Getters$2_$ctor_Z4BE6C149, string, Getters$2__get_Errors, map as map$1, oneOf, int, int64, decimal, bool } from '../../fable_modules/Thoth.Json.Core.0.9.1/Decode.fs.js';
 import { Decode_resizeArrayOrSingleton, Helpers_prependPath } from '../Decode.js';
@@ -99,10 +99,10 @@ function genericEncoder(obj) {
 }
 function encoder(obj) {
   const values_1 = toList(delay(() => {
-    let value$1 = void 0;
-    return append(singleton(["@id", (value$1 = obj.Id, {
+    let value = void 0;
+    return append(singleton(["@id", (value = obj.Id, {
       Encode(helpers) {
-        return helpers.encodeString(value$1);
+        return helpers.encodeString(value);
       }
     })]), delay(() => append(singleton(["@type", resizeArrayOrSingleton((value_1) => ({
       Encode(helpers_1) {
@@ -114,7 +114,7 @@ function encoder(obj) {
       }
     }), obj.AdditionalType)]) : empty(), delay(() => {
       let matchValue = void 0;
-      return append((matchValue = obj.TryGetContext(), matchValue != null ? singleton(["@context", encoder$3(value(matchValue))]) : empty()), delay(() => collect((kv) => {
+      return append((matchValue = obj.TryGetContext(), matchValue != null ? singleton(["@context", encoder$3(matchValue)]) : empty()), delay(() => collect((kv) => {
         const l = kv[0].toLocaleLowerCase();
         return l !== "id" && l !== "schematype" && l !== "additionaltype" && l !== "@context" && !l.startsWith("init@") && !l.startsWith("init_") ? singleton([kv[0], genericEncoder(kv[1])]) : empty();
       }, obj.GetProperties(true))));

package/dist/ts/ts/Json/Run.js

@@ -1,5 +1,5 @@
 import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-ts/List.js';
-import { value, unwrap } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { unwrap } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { tryInclude, tryIncludeSeq } from './Encode.js';
 import { OntologyAnnotation_encoder, OntologyAnnotation_decoder } from './OntologyAnnotation.js';
 import { encoder as encoder$1, decoder as decoder$2, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$2 } from './Datamap/Datamap.js';
@@ -11,17 +11,17 @@ import { ArcRun } from '../Core/ArcTypes.js';
 import { object, string, resizeArray } from '../fable_modules/Thoth.Json.Core.0.9.1/Decode.fs.js';
 
 function encoder(run) {
-  let value$1 = void 0;
+  let value = void 0;
   const values_1 = choose((tupledArg) => {
     const option_1 = tupledArg[1];
     if (option_1 != null) {
-      return [tupledArg[0], value(option_1)];
+      return [tupledArg[0], option_1];
     } else {
       return void 0;
     }
-  }, ofArray([["Identifier", (value$1 = run.Identifier, {
+  }, ofArray([["Identifier", (value = run.Identifier, {
     Encode(helpers) {
-      return helpers.encodeString(value$1);
+      return helpers.encodeString(value);
     }
   })], tryInclude("Title", (value_1) => ({
     Encode(helpers_1) {
@@ -48,17 +48,17 @@ const decoder = object((get$) => {
   return ArcRun.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("WorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$1), objectArg_7 = get$.Optional, objectArg_7.Field("Tables", arg_15))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("Datamap", decoder$2))), unwrap((arg_19 = resizeArray(decoder$3), objectArg_9 = get$.Optional, objectArg_9.Field("Performers", arg_19))), void 0, void 0, unwrap((arg_21 = resizeArray(decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("Comments", arg_21))));
 });
 function encoderCompressed(stringTable, oaTable, cellTable, run) {
-  let value$1 = void 0;
+  let value = void 0;
   const values_1 = choose((tupledArg) => {
     const option_1 = tupledArg[1];
     if (option_1 != null) {
-      return [tupledArg[0], value(option_1)];
+      return [tupledArg[0], option_1];
     } else {
       return void 0;
     }
-  }, ofArray([["Identifier", (value$1 = run.Identifier, {
+  }, ofArray([["Identifier", (value = run.Identifier, {
     Encode(helpers) {
-      return helpers.encodeString(value$1);
+      return helpers.encodeString(value);
     }
   })], tryInclude("Title", (value_1) => ({
     Encode(helpers_1) {

package/dist/ts/ts/Json/StringTable.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"StringTable.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Json/StringTable.ts"],"names":[],"mappings":"AAEA,OAAO,EAAa,IAAI,EAAE,YAAY,EAAE,MAAM,qCAAqC,CAAC;AAEpF,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAA2C,SAAS,EAAE,UAAU,EAAqB,MAAM,oDAAoD,CAAC;AAOvJ,wBAAgB,YAAY,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,GAAG,YAAY,CAAC,MAAM,CAAC,CAM3E;AAED,wBAAgB,OAAO,CAAC,EAAE,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,UAAU,CAY5D;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,YAAY,CAAC,MAAM,CAAC,CAA2B,CAAC;AAEhF,wBAAgB,YAAY,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,CAAC,EAAE,MAAM,GAAG,UAAU,CAyB5E;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,SAAS,CAAC,MAAM,CAAC,CAOxE"}
+{"version":3,"file":"StringTable.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Json/StringTable.ts"],"names":[],"mappings":"AAEA,OAAO,EAAa,IAAI,EAAE,YAAY,EAAE,MAAM,qCAAqC,CAAC;AAEpF,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAA2C,SAAS,EAAE,UAAU,EAAqB,MAAM,oDAAoD,CAAC;AAOvJ,wBAAgB,YAAY,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,GAAG,YAAY,CAAC,MAAM,CAAC,CAM3E;AAED,wBAAgB,OAAO,CAAC,EAAE,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,UAAU,CAY5D;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,YAAY,CAAC,MAAM,CAAC,CAA2B,CAAC;AAEhF,wBAAgB,YAAY,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,CAAC,EAAE,MAAM,GAAG,UAAU,CAuB5E;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,SAAS,CAAC,MAAM,CAAC,CAOxE"}

package/dist/ts/ts/Json/StringTable.js

@@ -2,9 +2,8 @@ import { fill, setItem, map, item } from '../../node_modules/@fable-org/fable-li
 import { defaultOf } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
 import { iterate } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { array, string, int } from '../fable_modules/Thoth.Json.Core.0.9.1/Decode.fs.js';
-import { value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
-import { tryGetValue, addToDict } from '../../node_modules/@fable-org/fable-library-ts/MapUtil.js';
 import { FSharpRef } from '../../node_modules/@fable-org/fable-library-ts/Types.js';
+import { tryGetValue, addToDict } from '../../node_modules/@fable-org/fable-library-ts/MapUtil.js';
 import { FSharpResult$2_Error$, FSharpResult$2_Ok } from '../../node_modules/@fable-org/fable-library-ts/Result.js';
 
 function arrayFromMap(otm) {
@@ -31,10 +30,8 @@ const decoder = array(string);
 function encodeString(otm, s) {
   let matchValue;
   let patternInput;
-  let outArg = defaultOf();
-  patternInput = [tryGetValue(otm, s, new FSharpRef(() => outArg | 0, (v) => {
-    outArg = v | 0;
-  })), outArg];
+  const cell = new FSharpRef(defaultOf());
+  patternInput = [tryGetValue(otm, s, cell), cell.contents];
   matchValue = patternInput[0] ? patternInput[1] : void 0;
   if (matchValue == null) {
     const i_1 = otm.size | 0;
@@ -45,7 +42,7 @@ function encodeString(otm, s) {
       }
     };
   } else {
-    const i = value(matchValue) | 0;
+    const i = matchValue | 0;
     return {
       Encode(helpers) {
         return helpers.encodeSignedIntegralNumber(i);

package/dist/ts/ts/Json/Study.js

@@ -36,17 +36,17 @@ function Helper_getAssayInformation(assays, study) {
   }
 }
 function encoder(study) {
-  let value$1 = void 0;
+  let value = void 0;
   const values_1 = choose((tupledArg) => {
     const option_1 = tupledArg[1];
     if (option_1 != null) {
-      return [tupledArg[0], value(option_1)];
+      return [tupledArg[0], option_1];
     } else {
       return void 0;
     }
-  }, ofArray([["Identifier", (value$1 = study.Identifier, {
+  }, ofArray([["Identifier", (value = study.Identifier, {
     Encode(helpers) {
-      return helpers.encodeString(value$1);
+      return helpers.encodeString(value);
     }
   })], tryInclude("Title", (value_1) => ({
     Encode(helpers_1) {
@@ -81,17 +81,17 @@ const decoder = object((get$) => {
   return new ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", string))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11))), unwrap((arg_13 = resizeArray(decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15))), unwrap((arg_17 = resizeArray(decoder$3), objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17))), unwrap((objectArg_9 = get$.Optional, objectArg_9.Field("Datamap", decoder$4))), unwrap((arg_21 = resizeArray(string), objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21))), unwrap((arg_23 = resizeArray(decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
 });
 function encoderCompressed(stringTable, oaTable, cellTable, study) {
-  let value$1 = void 0;
+  let value = void 0;
   const values_1 = choose((tupledArg) => {
     const option_1 = tupledArg[1];
     if (option_1 != null) {
-      return [tupledArg[0], value(option_1)];
+      return [tupledArg[0], option_1];
     } else {
       return void 0;
     }
-  }, ofArray([["Identifier", (value$1 = study.Identifier, {
+  }, ofArray([["Identifier", (value = study.Identifier, {
     Encode(helpers) {
-      return helpers.encodeString(value$1);
+      return helpers.encodeString(value);
     }
   })], tryInclude("Title", (value_1) => ({
     Encode(helpers_1) {
@@ -136,20 +136,20 @@ function ROCrate_genID(a) {
   }
 }
 function ROCrate_encoder(assays, s) {
-  let value$1 = void 0, value_3 = void 0, studyName = void 0, assayName_1 = void 0;
+  let value = void 0, value_3 = void 0, studyName = void 0, assayName_1 = void 0;
   const fileName = Study_tryFileNameFromIdentifier(s.Identifier);
   const processes = ARCtrl_ArcTables__ArcTables_GetProcesses(s);
   const assays_1 = Helper_getAssayInformation(assays, s);
   const values_1 = choose((tupledArg) => {
     const option_1 = tupledArg[1];
     if (option_1 != null) {
-      return [tupledArg[0], value(option_1)];
+      return [tupledArg[0], option_1];
     } else {
       return void 0;
     }
-  }, ofArray([["@id", (value$1 = ROCrate_genID(s), {
+  }, ofArray([["@id", (value = ROCrate_genID(s), {
     Encode(helpers) {
-      return helpers.encodeString(value$1);
+      return helpers.encodeString(value);
     }
   })], ["@type", list(singleton({
     Encode(helpers_1) {
@@ -193,20 +193,20 @@ function ROCrate_encoder(assays, s) {
 }
 const ROCrate_decoder = object((get$) => {
   let option_1 = void 0, objectArg = void 0, collection = void 0, ps = void 0, objectArg_3 = void 0, objectArg_4 = void 0, objectArg_5 = void 0, objectArg_6 = void 0, arg_16 = void 0, objectArg_7 = void 0, arg_18 = void 0, objectArg_8 = void 0, arg_20 = void 0, objectArg_9 = void 0, arg_22 = void 0, objectArg_10 = void 0;
-  const identifier = defaultArg((option_1 = (objectArg = get$.Optional, objectArg.Field("filename", string)), option_1 != null ? Study_tryIdentifierFromFileName(value(option_1)) : void 0), createMissingIdentifier());
+  const identifier = defaultArg((option_1 = (objectArg = get$.Optional, objectArg.Field("filename", string)), option_1 != null ? Study_tryIdentifierFromFileName(option_1) : void 0), createMissingIdentifier());
   let assays;
   const arg_3 = list$1(ROCrate_decoder$1);
   const objectArg_1 = get$.Optional;
   assays = objectArg_1.Field("assays", arg_3);
   let assayIdentifiers;
   const option_4 = assays;
-  assayIdentifiers = option_4 != null ? (collection = map$1((a) => a.Identifier, value(option_4)), Array.from(collection)) : void 0;
+  assayIdentifiers = option_4 != null ? (collection = map$1((a) => a.Identifier, option_4), Array.from(collection)) : void 0;
   let tables;
   let option_6;
   const arg_6 = list$1(ROCrate_decoder$2);
   const objectArg_2 = get$.Optional;
   option_6 = objectArg_2.Field("processSequence", arg_6);
-  tables = option_6 != null ? (ps = value(option_6), ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D(ps).Tables) : void 0;
+  tables = option_6 != null ? (ps = option_6, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D(ps).Tables) : void 0;
   return [new ArcStudy(identifier, unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("title", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("description", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("submissionDate", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("publicReleaseDate", string))), unwrap((arg_16 = resizeArray(ROCrate_decoder$3), objectArg_7 = get$.Optional, objectArg_7.Field("publications", arg_16))), unwrap((arg_18 = resizeArray(ROCrate_decoder$4), objectArg_8 = get$.Optional, objectArg_8.Field("people", arg_18))), unwrap((arg_20 = resizeArray(OntologyAnnotation_ROCrate_decoderDefinedTerm), objectArg_9 = get$.Optional, objectArg_9.Field("studyDesignDescriptors", arg_20))), unwrap(tables), void 0, unwrap(assayIdentifiers), unwrap((arg_22 = resizeArray(ROCrate_decoder$5), objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_22)))), defaultArg(assays, empty())];
 });
 function ISAJson_encoder(idMap, assays, s) {
@@ -248,7 +248,7 @@ function ISAJson_encoder(idMap, assays, s) {
     const values_1 = choose((tupledArg) => {
       const option_1 = tupledArg[1];
       if (option_1 != null) {
-        return [tupledArg[0], value(option_1)];
+        return [tupledArg[0], option_1];
       } else {
         return void 0;
       }
@@ -289,7 +289,7 @@ function ISAJson_encoder(idMap, assays, s) {
     };
   };
   if (idMap != null) {
-    return encode(ROCrate_genID, f, s, value(idMap));
+    return encode(ROCrate_genID, f, s, idMap);
   } else {
     return f(s);
   }
@@ -301,13 +301,13 @@ const ISAJson_decoder = Decode_objectNoAdditionalProperties(ISAJson_allowedField
   let option_4;
   const objectArg = get$.Optional;
   option_4 = objectArg.Field("identifier", string);
-  identifier = option_4 != null ? value(option_4) : defaultArg((option_1 = (objectArg_1 = get$.Optional, objectArg_1.Field("filename", string)), option_1 != null ? Study_tryIdentifierFromFileName(value(option_1)) : void 0), createMissingIdentifier());
+  identifier = option_4 != null ? option_4 : defaultArg((option_1 = (objectArg_1 = get$.Optional, objectArg_1.Field("filename", string)), option_1 != null ? Study_tryIdentifierFromFileName(option_1) : void 0), createMissingIdentifier());
   let tables;
   let option_6;
   const arg_5 = list$1(ISAJson_decoder$1);
   const objectArg_2 = get$.Optional;
   option_6 = objectArg_2.Field("processSequence", arg_5);
-  tables = option_6 != null ? (a = ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D(value(option_6)), a.Tables) : void 0;
+  tables = option_6 != null ? (a = ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D(option_6), a.Tables) : void 0;
   let assays;
   const arg_8 = list$1(ISAJson_decoder$2);
   const objectArg_3 = get$.Optional;
@@ -353,7 +353,7 @@ const ISAJson_decoder = Decode_objectNoAdditionalProperties(ISAJson_allowedField
   }
   let assayIdentifiers;
   const option_8 = assays;
-  assayIdentifiers = option_8 != null ? (collection = map$1((a_1) => a_1.Identifier, value(option_8)), Array.from(collection)) : void 0;
+  assayIdentifiers = option_8 != null ? (collection = map$1((a_1) => a_1.Identifier, option_8), Array.from(collection)) : void 0;
   return [new ArcStudy(identifier, unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("title", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("description", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("submissionDate", string))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("publicReleaseDate", string))), unwrap((arg_21 = resizeArray(ISAJson_decoder$4), objectArg_9 = get$.Optional, objectArg_9.Field("publications", arg_21))), unwrap(persons.length === 0 ? void 0 : persons), unwrap((arg_23 = resizeArray(OntologyAnnotation_ISAJson_decoder), objectArg_10 = get$.Optional, objectArg_10.Field("studyDesignDescriptors", arg_23))), unwrap(tables), void 0, unwrap(assayIdentifiers), unwrap((arg_25 = resizeArray(ISAJson_decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("comments", arg_25)))), defaultArg(assays, empty())];
 });
 

package/dist/ts/ts/Json/Table/CellTable.js

@@ -4,7 +4,6 @@ import { comparePrimitives } from '../../../node_modules/@fable-org/fable-librar
 import { map as map$1, item } from '../../../node_modules/@fable-org/fable-library-ts/Array.js';
 import { encoderCompressed, decoderCompressed } from './CompositeCell.js';
 import { array, object, int } from '../../fable_modules/Thoth.Json.Core.0.9.1/Decode.fs.js';
-import { value } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-ts/MapUtil.js';
 
 function arrayFromMap(otm) {
@@ -35,7 +34,7 @@ function encodeCell(otm, cc) {
       }
     };
   } else {
-    const i = value(matchValue) | 0;
+    const i = matchValue | 0;
     return {
       Encode(helpers) {
         return helpers.encodeSignedIntegralNumber(i);

package/dist/ts/ts/Json/Table/OATable.js

@@ -4,7 +4,6 @@ import { comparePrimitives } from '../../../node_modules/@fable-org/fable-librar
 import { map as map$1, item } from '../../../node_modules/@fable-org/fable-library-ts/Array.js';
 import { OntologyAnnotation_compressedEncoder, OntologyAnnotation_compressedDecoder } from '../OntologyAnnotation.js';
 import { array, object, int } from '../../fable_modules/Thoth.Json.Core.0.9.1/Decode.fs.js';
-import { value } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-ts/MapUtil.js';
 
 function arrayFromMap(otm) {
@@ -35,7 +34,7 @@ function encodeOA(otm, oa) {
       }
     };
   } else {
-    const i = value(matchValue) | 0;
+    const i = matchValue | 0;
     return {
       Encode(helpers) {
         return helpers.encodeSignedIntegralNumber(i);

package/dist/ts/ts/Json/Workflow.js

@@ -1,5 +1,5 @@
 import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-ts/List.js';
-import { value, unwrap } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { unwrap } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { tryInclude, tryIncludeSeq } from './Encode.js';
 import { OntologyAnnotation_encoder, OntologyAnnotation_decoder } from './OntologyAnnotation.js';
 import { encoder as encoder$1, decoder as decoder$2, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$1 } from './Datamap/Datamap.js';
@@ -11,17 +11,17 @@ import { ArcWorkflow } from '../Core/ArcTypes.js';
 import { object, string, resizeArray } from '../fable_modules/Thoth.Json.Core.0.9.1/Decode.fs.js';
 
 function encoder(workflow) {
-  let value$1 = void 0;
+  let value = void 0;
   const values_1 = choose((tupledArg) => {
     const option_1 = tupledArg[1];
     if (option_1 != null) {
-      return [tupledArg[0], value(option_1)];
+      return [tupledArg[0], option_1];
     } else {
       return void 0;
     }
-  }, ofArray([["Identifier", (value$1 = workflow.Identifier, {
+  }, ofArray([["Identifier", (value = workflow.Identifier, {
     Encode(helpers) {
-      return helpers.encodeString(value$1);
+      return helpers.encodeString(value);
     }
   })], tryInclude("WorkflowType", OntologyAnnotation_encoder, workflow.WorkflowType), tryInclude("Title", (value_1) => ({
     Encode(helpers_1) {
@@ -56,17 +56,17 @@ const decoder = object((get$) => {
   return ArcWorkflow.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$1), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((objectArg_9 = get$.Optional, objectArg_9.Field("Datamap", decoder$2))), unwrap((arg_21 = resizeArray(decoder$3), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), void 0, unwrap((arg_23 = resizeArray(decoder$4), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
 });
 function encoderCompressed(stringTable, oaTable, cellTable, workflow) {
-  let value$1 = void 0;
+  let value = void 0;
   const values_1 = choose((tupledArg) => {
     const option_1 = tupledArg[1];
     if (option_1 != null) {
-      return [tupledArg[0], value(option_1)];
+      return [tupledArg[0], option_1];
     } else {
       return void 0;
     }
-  }, ofArray([["Identifier", (value$1 = workflow.Identifier, {
+  }, ofArray([["Identifier", (value = workflow.Identifier, {
     Encode(helpers) {
-      return helpers.encodeString(value$1);
+      return helpers.encodeString(value);
     }
   })], tryInclude("WorkflowType", OntologyAnnotation_encoder, workflow.WorkflowType), tryInclude("Title", (value_1) => ({
     Encode(helpers_1) {

package/dist/ts/ts/Json.d.ts

@@ -1,12 +1,44 @@
-import { OntologyAnnotation } from './Core/OntologyAnnotation.ts';
+import { Comment$ } from './Core/Comment.ts';
 import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
 import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
+import { OntologySourceReference } from './Core/OntologySourceReference.ts';
+import { OntologyAnnotation } from './Core/OntologyAnnotation.ts';
 import { Person } from './Core/Person.ts';
+import { Publication } from './Core/Publication.ts';
+import { CompositeHeader_$union, IOType_$union } from './Core/Table/CompositeHeader.ts';
+import { CompositeCell_$union } from './Core/Table/CompositeCell.ts';
+import { ArcTable } from './Core/Table/ArcTable.ts';
+import { Data } from './Core/Data.ts';
+import { DataFile_$union } from './Core/DataFile.ts';
+import { DataContext } from './Core/DataContext.ts';
+import { Template } from './Core/Template.ts';
 import { Datamap } from './Core/Datamap.ts';
 import { ArcInvestigation, ArcRun, ArcWorkflow, ArcStudy, ArcAssay } from './Core/ArcTypes.ts';
 import { FSharpList } from '@fable-org/fable-library-ts/List.ts';
 import { ARC } from './ARC.ts';
 import { LDNode, LDGraph } from './ROCrate/LDObject.ts';
+export declare class JsonHelper_CommentJson {
+    constructor();
+    fromJsonString(s: string): Comment$;
+    fromISAJsonString(s: string): Comment$;
+    fromROCrateJsonString(s: string): Comment$;
+    toJsonString(comment: Comment$, spaces?: int32): string;
+    toISAJsonString(comment: Comment$, spaces?: int32): string;
+    toROCrateJsonString(comment: Comment$, spaces?: int32): string;
+}
+export declare function JsonHelper_CommentJson_$reflection(): TypeInfo;
+export declare function JsonHelper_CommentJson_$ctor(): JsonHelper_CommentJson;
+export declare class JsonHelper_OntologySourceReferenceJson {
+    constructor();
+    fromJsonString(s: string): OntologySourceReference;
+    fromISAJsonString(s: string): OntologySourceReference;
+    fromROCrateJsonString(s: string): OntologySourceReference;
+    toJsonString(reference: OntologySourceReference, spaces?: int32): string;
+    toISAJsonString(reference: OntologySourceReference, spaces?: int32): string;
+    toROCrateJsonString(reference: OntologySourceReference, spaces?: int32): string;
+}
+export declare function JsonHelper_OntologySourceReferenceJson_$reflection(): TypeInfo;
+export declare function JsonHelper_OntologySourceReferenceJson_$ctor(): JsonHelper_OntologySourceReferenceJson;
 export declare class JsonHelper_OntologyAnnotationJson {
     constructor();
     fromJsonString(s: string): OntologyAnnotation;
@@ -29,6 +61,83 @@ export declare class JsonHelper_PersonJson {
 }
 export declare function JsonHelper_PersonJson_$reflection(): TypeInfo;
 export declare function JsonHelper_PersonJson_$ctor(): JsonHelper_PersonJson;
+export declare class JsonHelper_PublicationJson {
+    constructor();
+    fromJsonString(s: string): Publication;
+    fromISAJsonString(s: string): Publication;
+    fromROCrateJsonString(s: string): Publication;
+    toJsonString(publication: Publication, spaces?: int32): string;
+    toISAJsonString(publication: Publication, spaces?: int32, useIDReferencing?: boolean): string;
+    toROCrateJsonString(publication: Publication, spaces?: int32): string;
+}
+export declare function JsonHelper_PublicationJson_$reflection(): TypeInfo;
+export declare function JsonHelper_PublicationJson_$ctor(): JsonHelper_PublicationJson;
+export declare class JsonHelper_IOTypeJson {
+    constructor();
+    fromJsonString(s: string): IOType_$union;
+    toJsonString(ioType: IOType_$union, spaces?: int32): string;
+}
+export declare function JsonHelper_IOTypeJson_$reflection(): TypeInfo;
+export declare function JsonHelper_IOTypeJson_$ctor(): JsonHelper_IOTypeJson;
+export declare class JsonHelper_CompositeHeaderJson {
+    constructor();
+    fromJsonString(s: string): CompositeHeader_$union;
+    toJsonString(header: CompositeHeader_$union, spaces?: int32): string;
+}
+export declare function JsonHelper_CompositeHeaderJson_$reflection(): TypeInfo;
+export declare function JsonHelper_CompositeHeaderJson_$ctor(): JsonHelper_CompositeHeaderJson;
+export declare class JsonHelper_CompositeCellJson {
+    constructor();
+    fromJsonString(s: string): CompositeCell_$union;
+    toJsonString(cell: CompositeCell_$union, spaces?: int32): string;
+}
+export declare function JsonHelper_CompositeCellJson_$reflection(): TypeInfo;
+export declare function JsonHelper_CompositeCellJson_$ctor(): JsonHelper_CompositeCellJson;
+export declare class JsonHelper_ArcTableJson {
+    constructor();
+    fromJsonString(s: string): ArcTable;
+    fromCompressedJsonString(s: string): ArcTable;
+    toJsonString(table: ArcTable, spaces?: int32): string;
+    toCompressedJsonString(table: ArcTable, spaces?: int32): string;
+}
+export declare function JsonHelper_ArcTableJson_$reflection(): TypeInfo;
+export declare function JsonHelper_ArcTableJson_$ctor(): JsonHelper_ArcTableJson;
+export declare class JsonHelper_DataJson {
+    constructor();
+    fromJsonString(s: string): Data;
+    fromISAJsonString(s: string): Data;
+    fromROCrateJsonString(s: string): Data;
+    toJsonString(data: Data, spaces?: int32): string;
+    toISAJsonString(data: Data, spaces?: int32, useIDReferencing?: boolean): string;
+    toROCrateJsonString(data: Data, spaces?: int32): string;
+}
+export declare function JsonHelper_DataJson_$reflection(): TypeInfo;
+export declare function JsonHelper_DataJson_$ctor(): JsonHelper_DataJson;
+export declare class JsonHelper_DataFileJson {
+    constructor();
+    fromISAJsonString(s: string): DataFile_$union;
+    fromROCrateJsonString(s: string): DataFile_$union;
+    toISAJsonString(dataFile: DataFile_$union, spaces?: int32): string;
+    toROCrateJsonString(dataFile: DataFile_$union, spaces?: int32): string;
+}
+export declare function JsonHelper_DataFileJson_$reflection(): TypeInfo;
+export declare function JsonHelper_DataFileJson_$ctor(): JsonHelper_DataFileJson;
+export declare class JsonHelper_DataContextJson {
+    constructor();
+    fromJsonString(s: string): DataContext;
+    toJsonString(dataContext: DataContext, spaces?: int32): string;
+}
+export declare function JsonHelper_DataContextJson_$reflection(): TypeInfo;
+export declare function JsonHelper_DataContextJson_$ctor(): JsonHelper_DataContextJson;
+export declare class JsonHelper_TemplateJson {
+    constructor();
+    fromJsonString(s: string): Template;
+    fromCompressedJsonString(s: string): Template;
+    toJsonString(template: Template, spaces?: int32): string;
+    toCompressedJsonString(template: Template, spaces?: int32): string;
+}
+export declare function JsonHelper_TemplateJson_$reflection(): TypeInfo;
+export declare function JsonHelper_TemplateJson_$ctor(): JsonHelper_TemplateJson;
 export declare class JsonHelper_DatamapJson {
     constructor();
     fromJsonString(s: string): Datamap;
@@ -114,8 +223,19 @@ export declare function JsonHelper_LDNodeJson_$reflection(): TypeInfo;
 export declare function JsonHelper_LDNodeJson_$ctor(): JsonHelper_LDNodeJson;
 export declare class JsonController {
     constructor();
+    static get Comment(): JsonHelper_CommentJson;
+    static get OntologySourceReference(): JsonHelper_OntologySourceReferenceJson;
     static get OntologyAnnotation(): JsonHelper_OntologyAnnotationJson;
     static get Person(): JsonHelper_PersonJson;
+    static get Publication(): JsonHelper_PublicationJson;
+    static get IOType(): JsonHelper_IOTypeJson;
+    static get CompositeHeader(): JsonHelper_CompositeHeaderJson;
+    static get CompositeCell(): JsonHelper_CompositeCellJson;
+    static get ArcTable(): JsonHelper_ArcTableJson;
+    static get Data(): JsonHelper_DataJson;
+    static get DataFile(): JsonHelper_DataFileJson;
+    static get DataContext(): JsonHelper_DataContextJson;
+    static get Template(): JsonHelper_TemplateJson;
     static get Datamap(): JsonHelper_DatamapJson;
     static get Assay(): JsonHelper_AssayJson;
     static get Study(): JsonHelper_StudyJson;

package/dist/ts/ts/Json.d.ts.map

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