@nfdi4plants/arctrl 3.2.3 → 3.3.0

package/dist/ts/ts/Core/ArcTypes.js

@@ -142,7 +142,7 @@ class ArcAssay extends ArcTables {
     if (matchValue == null) {
       return [];
     } else {
-      const i = value(matchValue);
+      const i = matchValue;
       return toArray(filter((s) => {
         const source = s.RegisteredAssayIdentifiers;
         return contains(this$.Identifier, source, {
@@ -386,7 +386,7 @@ class ArcAssay extends ArcTables {
     const nextComments = ResizeArray_map((c_1) => c_1.Copy(), this$.Comments);
     let nextDatamap;
     const option_1 = this$.Datamap;
-    nextDatamap = option_1 != null ? (d = value(option_1), d.Copy()) : void 0;
+    nextDatamap = option_1 != null ? (d = option_1, d.Copy()) : void 0;
     const nextPerformers = ResizeArray_map((c_2) => c_2.Copy(), this$.Performers);
     const identifier = this$.Identifier;
     const title = this$.Title;
@@ -819,7 +819,7 @@ class ArcStudy extends ArcTables {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -834,7 +834,7 @@ class ArcStudy extends ArcTables {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -849,7 +849,7 @@ class ArcStudy extends ArcTables {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -917,7 +917,7 @@ class ArcStudy extends ArcTables {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -944,13 +944,13 @@ class ArcStudy extends ArcTables {
     if (matchValue == null) {
       return ResizeArray_map((identifier_1) => ArcAssay.init(identifier_1), this$.RegisteredAssayIdentifiers);
     } else {
-      const i = value(matchValue);
+      const i = matchValue;
       return ResizeArray_map((identifier) => {
         const matchValue_1 = i.TryGetAssay(identifier);
         if (matchValue_1 == null) {
           return ArcAssay.init(identifier);
         } else {
-          return value(matchValue_1);
+          return matchValue_1;
         }
       }, this$.RegisteredAssayIdentifiers);
     }
@@ -1224,7 +1224,7 @@ class ArcStudy extends ArcTables {
     const nextStudyDesignDescriptors = ResizeArray_map((c_3) => c_3.Copy(), this$.StudyDesignDescriptors);
     let nextDatamap;
     const option_1 = this$.Datamap;
-    nextDatamap = option_1 != null ? (d = value(option_1), d.Copy()) : void 0;
+    nextDatamap = option_1 != null ? (d = option_1, d.Copy()) : void 0;
     let study;
     const identifier = this$.Identifier;
     const title = this$.Title;
@@ -1379,6 +1379,7 @@ class ArcWorkflow {
     this["cwlDescription@1172"] = cwlDescription;
     this["comments@1173"] = defaultArg(comments, []);
     this.staticHash = 0;
+    this.cwlStaticHash = 0;
   }
   /**
    * Must be unique in one study
@@ -1506,6 +1507,22 @@ class ArcWorkflow {
     const this$ = this;
     this$.staticHash = s | 0;
   }
+  /**
+   * The hash of the CWL file of the workflow at the last read or write, or 0 when the file was not there. The ARC
+   * compares it with GetCWLHashCode to find the changes of the file, as it compares StaticHash for the xlsx file.
+   */
+  get CWLStaticHash() {
+    const this$ = this;
+    return this$.cwlStaticHash | 0;
+  }
+  /**
+   * The hash of the CWL file of the workflow at the last read or write, or 0 when the file was not there. The ARC
+   * compares it with GetCWLHashCode to find the changes of the file, as it compares StaticHash for the xlsx file.
+   */
+  set CWLStaticHash(h) {
+    const this$ = this;
+    this$.cwlStaticHash = h | 0;
+  }
   static init(identifier) {
     return new ArcWorkflow(identifier);
   }
@@ -1540,7 +1557,7 @@ class ArcWorkflow {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -1555,7 +1572,7 @@ class ArcWorkflow {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -1570,7 +1587,7 @@ class ArcWorkflow {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -1637,7 +1654,7 @@ class ArcWorkflow {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -1664,13 +1681,13 @@ class ArcWorkflow {
     if (matchValue == null) {
       return ResizeArray_map((identifier_1) => ArcWorkflow.init(identifier_1), this$.SubWorkflowIdentifiers);
     } else {
-      const i = value(matchValue);
+      const i = matchValue;
       return ResizeArray_map((identifier) => {
         const matchValue_1 = i.TryGetWorkflow(identifier);
         if (matchValue_1 == null) {
           return ArcWorkflow.init(identifier);
         } else {
-          return value(matchValue_1);
+          return matchValue_1;
         }
       }, this$.SubWorkflowIdentifiers);
     }
@@ -1697,13 +1714,13 @@ class ArcWorkflow {
     const copyInvestigationRef_1 = defaultArg(copyInvestigationRef, false);
     let nextWorkFlowType;
     const option_1 = this$.WorkflowType;
-    nextWorkFlowType = option_1 != null ? (w = value(option_1), w.Copy()) : void 0;
+    nextWorkFlowType = option_1 != null ? (w = option_1, w.Copy()) : void 0;
     const nextSubWorkflowIdentifiers = Array.from(this$.SubWorkflowIdentifiers);
     const nextParameters = ResizeArray_map((x) => x, this$.Parameters);
     const nextComponents = ResizeArray_map((x_1) => x_1, this$.Components);
     let nextDatamap;
     const option_3 = this$.Datamap;
-    nextDatamap = option_3 != null ? (d = value(option_3), d.Copy()) : void 0;
+    nextDatamap = option_3 != null ? (d = option_3, d.Copy()) : void 0;
     const nextContacts = ResizeArray_map((c) => c.Copy(), this$.Contacts);
     const nextComments = ResizeArray_map((c_1) => c_1.Copy(), this$.Comments);
     let workflow;
@@ -1788,6 +1805,15 @@ class ArcWorkflow {
     const this$ = this;
     return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.WorkflowType), boxHashOption(this$.URI), boxHashOption(this$.Version), boxHashSeq(this$.SubWorkflowIdentifiers), boxHashSeq(this$.Parameters), boxHashSeq(this$.Components), boxHashOption(this$.Datamap), boxHashSeq(this$.Contacts), boxHashOption(this$.CWLDescription), boxHashSeq(this$.Comments)]) | 0;
   }
+  /**
+   * The hash of the CWL file of the workflow, which holds its description. It is 0 for a workflow without a
+   * description, which has no file.
+   */
+  GetCWLHashCode() {
+    const this$ = this;
+    const matchValue = this$.CWLDescription;
+    return (matchValue != null ? boxHashOption(this$.CWLDescription) : 0) | 0;
+  }
   GetLightHashCode() {
     const this$ = this;
     return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.WorkflowType), boxHashOption(this$.URI), boxHashOption(this$.Version), boxHashSeq(this$.SubWorkflowIdentifiers), boxHashSeq(this$.Parameters), boxHashSeq(this$.Components), boxHashSeq(this$.Contacts), boxHashSeq(this$.Comments)]) | 0;
@@ -1807,34 +1833,36 @@ class ArcRun extends ArcTables {
     const comments_1 = defaultArg(comments, []);
     const workflowIdentifiers_1 = defaultArg(workflowIdentifiers, []);
     const cwlInput_1 = defaultArg(cwlInput, []);
-    this["identifier@1462"] = (identifier_1 = identifier.trim(), checkValidCharacters(identifier_1), identifier_1);
-    this["title@1466"] = title;
-    this["description@1467"] = description;
+    this["identifier@1475"] = (identifier_1 = identifier.trim(), checkValidCharacters(identifier_1), identifier_1);
+    this["title@1479"] = title;
+    this["description@1480"] = description;
     this.investigation = void 0;
-    this["measurementType@1469"] = measurementType;
-    this["technologyType@1470"] = technologyType;
-    this["technologyPlatform@1471"] = technologyPlatform;
-    this["workflowIdentifiers@1472-1"] = workflowIdentifiers_1;
-    this["datamap@1473"] = datamap;
-    this["performers@1474-1"] = performers_1;
-    this["cwlDescription@1475"] = cwlDescription;
-    this["cwlInput@1476-1"] = cwlInput_1;
-    this["comments@1477-1"] = comments_1;
+    this["measurementType@1482"] = measurementType;
+    this["technologyType@1483"] = technologyType;
+    this["technologyPlatform@1484"] = technologyPlatform;
+    this["workflowIdentifiers@1485-1"] = workflowIdentifiers_1;
+    this["datamap@1486"] = datamap;
+    this["performers@1487-1"] = performers_1;
+    this["cwlDescription@1488"] = cwlDescription;
+    this["cwlInput@1489-1"] = cwlInput_1;
+    this["comments@1490-1"] = comments_1;
     this.staticHash = 0;
+    this.cwlStaticHash = 0;
+    this.cwlInputStaticHash = 0;
   }
   /**
    * Must be unique in one study
    */
   get Identifier() {
     const this$ = this;
-    return this$["identifier@1462"];
+    return this$["identifier@1475"];
   }
   /**
    * Must be unique in one study
    */
   set Identifier(i) {
     const this$ = this;
-    this$["identifier@1462"] = i;
+    this$["identifier@1475"] = i;
   }
   get Investigation() {
     const this$ = this;
@@ -1846,91 +1874,91 @@ class ArcRun extends ArcTables {
   }
   get Title() {
     const this$ = this;
-    return unwrap(this$["title@1466"]);
+    return unwrap(this$["title@1479"]);
   }
   set Title(t) {
     const this$ = this;
-    this$["title@1466"] = t;
+    this$["title@1479"] = t;
   }
   get Description() {
     const this$ = this;
-    return unwrap(this$["description@1467"]);
+    return unwrap(this$["description@1480"]);
   }
   set Description(d) {
     const this$ = this;
-    this$["description@1467"] = d;
+    this$["description@1480"] = d;
   }
   get MeasurementType() {
     const this$ = this;
-    return unwrap(this$["measurementType@1469"]);
+    return unwrap(this$["measurementType@1482"]);
   }
   set MeasurementType(n) {
     const this$ = this;
-    this$["measurementType@1469"] = n;
+    this$["measurementType@1482"] = n;
   }
   get TechnologyType() {
     const this$ = this;
-    return unwrap(this$["technologyType@1470"]);
+    return unwrap(this$["technologyType@1483"]);
   }
   set TechnologyType(n) {
     const this$ = this;
-    this$["technologyType@1470"] = n;
+    this$["technologyType@1483"] = n;
   }
   get TechnologyPlatform() {
     const this$ = this;
-    return unwrap(this$["technologyPlatform@1471"]);
+    return unwrap(this$["technologyPlatform@1484"]);
   }
   set TechnologyPlatform(n) {
     const this$ = this;
-    this$["technologyPlatform@1471"] = n;
+    this$["technologyPlatform@1484"] = n;
   }
   get WorkflowIdentifiers() {
     const this$ = this;
-    return this$["workflowIdentifiers@1472-1"];
+    return this$["workflowIdentifiers@1485-1"];
   }
   set WorkflowIdentifiers(w) {
     const this$ = this;
-    this$["workflowIdentifiers@1472-1"] = w;
+    this$["workflowIdentifiers@1485-1"] = w;
   }
   get Datamap() {
     const this$ = this;
-    return unwrap(this$["datamap@1473"]);
+    return unwrap(this$["datamap@1486"]);
   }
   set Datamap(n) {
     const this$ = this;
-    this$["datamap@1473"] = n;
+    this$["datamap@1486"] = n;
   }
   get Performers() {
     const this$ = this;
-    return this$["performers@1474-1"];
+    return this$["performers@1487-1"];
   }
   set Performers(n) {
     const this$ = this;
-    this$["performers@1474-1"] = n;
+    this$["performers@1487-1"] = n;
   }
   get CWLDescription() {
     const this$ = this;
-    return unwrap(this$["cwlDescription@1475"]);
+    return unwrap(this$["cwlDescription@1488"]);
   }
   set CWLDescription(n) {
     const this$ = this;
-    this$["cwlDescription@1475"] = n;
+    this$["cwlDescription@1488"] = n;
   }
   get CWLInput() {
     const this$ = this;
-    return this$["cwlInput@1476-1"];
+    return this$["cwlInput@1489-1"];
   }
   set CWLInput(n) {
     const this$ = this;
-    this$["cwlInput@1476-1"] = n;
+    this$["cwlInput@1489-1"] = n;
   }
   get Comments() {
     const this$ = this;
-    return this$["comments@1477-1"];
+    return this$["comments@1490-1"];
   }
   set Comments(n) {
     const this$ = this;
-    this$["comments@1477-1"] = n;
+    this$["comments@1490-1"] = n;
   }
   get StaticHash() {
     const this$ = this;
@@ -1940,6 +1968,36 @@ class ArcRun extends ArcTables {
     const this$ = this;
     this$.staticHash = h | 0;
   }
+  /**
+   * The hash of the CWL file of the run at the last read or write, or 0 when the file was not there. The ARC compares
+   * it with GetCWLHashCode to find the changes of the file, as it compares StaticHash for the xlsx file.
+   */
+  get CWLStaticHash() {
+    const this$ = this;
+    return this$.cwlStaticHash | 0;
+  }
+  /**
+   * The hash of the CWL file of the run at the last read or write, or 0 when the file was not there. The ARC compares
+   * it with GetCWLHashCode to find the changes of the file, as it compares StaticHash for the xlsx file.
+   */
+  set CWLStaticHash(h) {
+    const this$ = this;
+    this$.cwlStaticHash = h | 0;
+  }
+  /**
+   * The hash of the parameter file run.yml at the last read or write, or 0 when the file was not there.
+   */
+  get CWLInputStaticHash() {
+    const this$ = this;
+    return this$.cwlInputStaticHash | 0;
+  }
+  /**
+   * The hash of the parameter file run.yml at the last read or write, or 0 when the file was not there.
+   */
+  set CWLInputStaticHash(h) {
+    const this$ = this;
+    this$.cwlInputStaticHash = h | 0;
+  }
   static init(identifier) {
     return new ArcRun(identifier);
   }
@@ -1971,7 +2029,7 @@ class ArcRun extends ArcTables {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -1986,7 +2044,7 @@ class ArcRun extends ArcTables {
     let inv;
     const investigation = this$.Investigation;
     if (investigation != null) {
-      inv = value(investigation);
+      inv = investigation;
     } else {
       throw new Exception("Cannot execute this function. Object is not part of ArcInvestigation.");
     }
@@ -2227,7 +2285,7 @@ class ArcRun extends ArcTables {
     const nextComments = ResizeArray_map((c_1) => c_1.Copy(), this$.Comments);
     let nextDatamap;
     const option_1 = this$.Datamap;
-    nextDatamap = option_1 != null ? (d = value(option_1), d.Copy()) : void 0;
+    nextDatamap = option_1 != null ? (d = option_1, d.Copy()) : void 0;
     const nextPerformers = ResizeArray_map((c_2) => c_2.Copy(), this$.Performers);
     const nextWorkflowIdentifiers = ResizeArray_map((c_3) => c_3, this$.WorkflowIdentifiers);
     const identifier = this$.Identifier;
@@ -2542,6 +2600,22 @@ class ArcRun extends ArcTables {
     const this$ = this;
     return other instanceof ArcRun && (run = other, this$.StructurallyEquals(run));
   }
+  /**
+   * The hash of the CWL file of the run, which holds its description. It is 0 for a run without a description,
+   * which has no file.
+   */
+  GetCWLHashCode() {
+    const this$ = this;
+    const matchValue = this$.CWLDescription;
+    return (matchValue != null ? boxHashOption(this$.CWLDescription) : 0) | 0;
+  }
+  /**
+   * The hash of the parameter file run.yml. It is 0 for a run without parameter references, which has no file.
+   */
+  GetCWLInputHashCode() {
+    const this$ = this;
+    return (this$.CWLInput.length === 0 ? 0 : boxHashSeq(this$.CWLInput)) | 0;
+  }
   GetLightHashCode() {
     const this$ = this;
     return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.MeasurementType), boxHashOption(this$.TechnologyType), boxHashOption(this$.TechnologyPlatform), boxHashSeq(this$.WorkflowIdentifiers), boxHashSeq(this$.Tables), boxHashSeq(this$.Performers), boxHashSeq(this$.Comments)]) | 0;
@@ -2615,149 +2689,149 @@ class ArcInvestigation {
     const registeredStudyIdentifiers_1 = defaultArg(registeredStudyIdentifiers, []);
     const comments_1 = defaultArg(comments, []);
     const remarks_1 = defaultArg(remarks, []);
-    this["identifier@1963"] = identifier;
-    this["title@1964"] = title;
-    this["description@1965"] = description;
-    this["submissionDate@1966"] = submissionDate;
-    this["publicReleaseDate@1967"] = publicReleaseDate;
-    this["ontologySourceReferences@1968-1"] = ontologySourceReferences_1;
-    this["publications@1969-1"] = publications_1;
-    this["contacts@1970-1"] = contacts_1;
-    this["assays@1971-1"] = assays_1;
-    this["studies@1972-1"] = studies_1;
-    this["workflows@1973-1"] = workflows_1;
-    this["runs@1974-1"] = runs_1;
-    this["registeredStudyIdentifiers@1975-1"] = registeredStudyIdentifiers_1;
-    this["comments@1976-1"] = comments_1;
-    this["remarks@1977-1"] = remarks_1;
+    this["identifier@1998"] = identifier;
+    this["title@1999"] = title;
+    this["description@2000"] = description;
+    this["submissionDate@2001"] = submissionDate;
+    this["publicReleaseDate@2002"] = publicReleaseDate;
+    this["ontologySourceReferences@2003-1"] = ontologySourceReferences_1;
+    this["publications@2004-1"] = publications_1;
+    this["contacts@2005-1"] = contacts_1;
+    this["assays@2006-1"] = assays_1;
+    this["studies@2007-1"] = studies_1;
+    this["workflows@2008-1"] = workflows_1;
+    this["runs@2009-1"] = runs_1;
+    this["registeredStudyIdentifiers@2010-1"] = registeredStudyIdentifiers_1;
+    this["comments@2011-1"] = comments_1;
+    this["remarks@2012-1"] = remarks_1;
     this.staticHash = 0;
-    this["init@1934"] = 1;
+    this["init@1969"] = 1;
   }
   /**
    * Must be unique in one investigation
    */
   get Identifier() {
     const this$ = this;
-    return this$["identifier@1963"];
+    return this$["identifier@1998"];
   }
   /**
    * Must be unique in one investigation
    */
   set Identifier(i) {
     const this$ = this;
-    this$["identifier@1963"] = i;
+    this$["identifier@1998"] = i;
   }
   get Title() {
     const this$ = this;
-    return unwrap(this$["title@1964"]);
+    return unwrap(this$["title@1999"]);
   }
   set Title(n) {
     const this$ = this;
-    this$["title@1964"] = n;
+    this$["title@1999"] = n;
   }
   get Description() {
     const this$ = this;
-    return unwrap(this$["description@1965"]);
+    return unwrap(this$["description@2000"]);
   }
   set Description(n) {
     const this$ = this;
-    this$["description@1965"] = n;
+    this$["description@2000"] = n;
   }
   get SubmissionDate() {
     const this$ = this;
-    return unwrap(this$["submissionDate@1966"]);
+    return unwrap(this$["submissionDate@2001"]);
   }
   set SubmissionDate(n) {
     const this$ = this;
-    this$["submissionDate@1966"] = n;
+    this$["submissionDate@2001"] = n;
   }
   get PublicReleaseDate() {
     const this$ = this;
-    return unwrap(this$["publicReleaseDate@1967"]);
+    return unwrap(this$["publicReleaseDate@2002"]);
   }
   set PublicReleaseDate(n) {
     const this$ = this;
-    this$["publicReleaseDate@1967"] = n;
+    this$["publicReleaseDate@2002"] = n;
   }
   get OntologySourceReferences() {
     const this$ = this;
-    return this$["ontologySourceReferences@1968-1"];
+    return this$["ontologySourceReferences@2003-1"];
   }
   set OntologySourceReferences(n) {
     const this$ = this;
-    this$["ontologySourceReferences@1968-1"] = n;
+    this$["ontologySourceReferences@2003-1"] = n;
   }
   get Publications() {
     const this$ = this;
-    return this$["publications@1969-1"];
+    return this$["publications@2004-1"];
   }
   set Publications(n) {
     const this$ = this;
-    this$["publications@1969-1"] = n;
+    this$["publications@2004-1"] = n;
   }
   get Contacts() {
     const this$ = this;
-    return this$["contacts@1970-1"];
+    return this$["contacts@2005-1"];
   }
   set Contacts(n) {
     const this$ = this;
-    this$["contacts@1970-1"] = n;
+    this$["contacts@2005-1"] = n;
   }
   get Assays() {
     const this$ = this;
-    return this$["assays@1971-1"];
+    return this$["assays@2006-1"];
   }
   set Assays(n) {
     const this$ = this;
-    this$["assays@1971-1"] = n;
+    this$["assays@2006-1"] = n;
   }
   get Studies() {
     const this$ = this;
-    return this$["studies@1972-1"];
+    return this$["studies@2007-1"];
   }
   set Studies(n) {
     const this$ = this;
-    this$["studies@1972-1"] = n;
+    this$["studies@2007-1"] = n;
   }
   get Workflows() {
     const this$ = this;
-    return this$["workflows@1973-1"];
+    return this$["workflows@2008-1"];
   }
   set Workflows(n) {
     const this$ = this;
-    this$["workflows@1973-1"] = n;
+    this$["workflows@2008-1"] = n;
   }
   get Runs() {
     const this$ = this;
-    return this$["runs@1974-1"];
+    return this$["runs@2009-1"];
   }
   set Runs(n) {
     const this$ = this;
-    this$["runs@1974-1"] = n;
+    this$["runs@2009-1"] = n;
   }
   get RegisteredStudyIdentifiers() {
     const this$ = this;
-    return this$["registeredStudyIdentifiers@1975-1"];
+    return this$["registeredStudyIdentifiers@2010-1"];
   }
   set RegisteredStudyIdentifiers(n) {
     const this$ = this;
-    this$["registeredStudyIdentifiers@1975-1"] = n;
+    this$["registeredStudyIdentifiers@2010-1"] = n;
   }
   get Comments() {
     const this$ = this;
-    return this$["comments@1976-1"];
+    return this$["comments@2011-1"];
   }
   set Comments(n) {
     const this$ = this;
-    this$["comments@1976-1"] = n;
+    this$["comments@2011-1"] = n;
   }
   get Remarks() {
     const this$ = this;
-    return this$["remarks@1977-1"];
+    return this$["remarks@2012-1"];
   }
   set Remarks(n) {
     const this$ = this;
-    this$["remarks@1977-1"] = n;
+    this$["remarks@2012-1"] = n;
   }
   get StaticHash() {
     const this$ = this;
@@ -2797,7 +2871,7 @@ class ArcInvestigation {
     const matchValue = tryFindIndex((x_1) => x_1 === assayIdent, map((x) => x.Identifier, this$.Assays));
     if (matchValue == null) {
     } else {
-      throw new Exception(`Cannot create assay with name ${assayIdent}, as assay names must be unique and assay at index ${value(matchValue)} has the same name.`);
+      throw new Exception(`Cannot create assay with name ${assayIdent}, as assay names must be unique and assay at index ${matchValue} has the same name.`);
     }
     assay.Investigation = this$;
     void this$.Assays.push(assay);
@@ -2925,7 +2999,7 @@ class ArcInvestigation {
     iterate((s) => {
       const index = tryFindIndex((ai) => ai === oldIdentifier, s.RegisteredAssayIdentifiers);
       if (index != null) {
-        const index_1 = value(index) | 0;
+        const index_1 = index | 0;
         setItem(s.RegisteredAssayIdentifiers, index_1, newIdentifier);
       }
     }, this$.Studies);
@@ -2966,14 +3040,14 @@ class ArcInvestigation {
       }
       const matchValue = tryFindIndex((subId) => subId === oldIdentifier, w.SubWorkflowIdentifiers);
       if (matchValue != null) {
-        const i = value(matchValue) | 0;
+        const i = matchValue | 0;
         setItem(w.SubWorkflowIdentifiers, i, newIdentifier);
       }
     }, this$.Workflows);
     iterate((r) => {
       const matchValue_1 = tryFindIndex((wId) => wId === oldIdentifier, r.WorkflowIdentifiers);
       if (matchValue_1 != null) {
-        const i_1 = value(matchValue_1) | 0;
+        const i_1 = matchValue_1 | 0;
         setItem(r.WorkflowIdentifiers, i_1, newIdentifier);
       }
     }, this$.Runs);
@@ -2991,7 +3065,7 @@ class ArcInvestigation {
     const matchValue = tryFindIndex((x) => x === assayIdent, map((a) => a.Identifier, removeAt(index, this$.Assays)));
     if (matchValue == null) {
     } else {
-      throw new Exception(`Cannot create assay with name ${assayIdent}, as assay names must be unique and assay at index ${value(matchValue)} has the same name.`);
+      throw new Exception(`Cannot create assay with name ${assayIdent}, as assay names must be unique and assay at index ${matchValue} has the same name.`);
     }
     assay.Investigation = this$;
     setItem(this$.Assays, index, assay);
@@ -3006,8 +3080,12 @@ class ArcInvestigation {
   }
   SetAssay(assayIdentifier, assay) {
     const this$ = this;
-    const index = this$.GetAssayIndex(assayIdentifier) | 0;
-    this$.SetAssayAt(index, assay);
+    const index = this$.Assays.findIndex((a) => a.Identifier === assayIdentifier) | 0;
+    if (index === -1) {
+      this$.AddAssay(assay);
+    } else {
+      this$.SetAssayAt(index, assay);
+    }
   }
   static setAssay(assayIdentifier, assay) {
     return (inv) => {
@@ -3043,7 +3121,7 @@ class ArcInvestigation {
     if (matchValue == null) {
       throw new Exception(ArcTypesAux_ErrorMsgs_unableToFindAssayIdentifier(assayIdentifier, this$.Identifier));
     } else {
-      return value(matchValue);
+      return matchValue;
     }
   }
   static getAssay(assayIdentifier) {
@@ -3118,7 +3196,7 @@ class ArcInvestigation {
     const matchValue = tryFindIndex((x) => x.Identifier === study_1.Identifier, this$.Studies);
     if (matchValue == null) {
     } else {
-      throw new Exception(`Cannot create study with name ${study_1.Identifier}, as study names must be unique and study at index ${value(matchValue)} has the same name.`);
+      throw new Exception(`Cannot create study with name ${study_1.Identifier}, as study names must be unique and study at index ${matchValue} has the same name.`);
     }
     study.Investigation = this$;
     void this$.Studies.push(study);
@@ -3263,7 +3341,7 @@ class ArcInvestigation {
     }, this$.Studies);
     const index = tryFindIndex((si) => si === oldIdentifier, this$.RegisteredStudyIdentifiers);
     if (index != null) {
-      const index_1 = value(index) | 0;
+      const index_1 = index | 0;
       setItem(this$.RegisteredStudyIdentifiers, index_1, newIdentifier);
     }
   }
@@ -3283,7 +3361,7 @@ class ArcInvestigation {
     const matchValue = tryFindIndex((x) => x.Identifier === study_1.Identifier, removeAt(index, this$.Studies));
     if (matchValue == null) {
     } else {
-      throw new Exception(`Cannot create study with name ${study_1.Identifier}, as study names must be unique and study at index ${value(matchValue)} has the same name.`);
+      throw new Exception(`Cannot create study with name ${study_1.Identifier}, as study names must be unique and study at index ${matchValue} has the same name.`);
     }
     study.Investigation = this$;
     setItem(this$.Studies, index, study);
@@ -3297,8 +3375,12 @@ class ArcInvestigation {
   }
   SetStudy(studyIdentifier, study) {
     const this$ = this;
-    const index = this$.GetStudyIndex(studyIdentifier) | 0;
-    this$.SetStudyAt(index, study);
+    const index = this$.Studies.findIndex((s) => s.Identifier === studyIdentifier) | 0;
+    if (index === -1) {
+      this$.AddStudy(study);
+    } else {
+      this$.SetStudyAt(index, study);
+    }
   }
   static setStudy(studyIdentifier, study) {
     return (inv) => {
@@ -3334,7 +3416,7 @@ class ArcInvestigation {
     if (matchValue == null) {
       throw new Exception(ArcTypesAux_ErrorMsgs_unableToFindStudyIdentifier(studyIdentifier, this$.Identifier));
     } else {
-      return value(matchValue);
+      return matchValue;
     }
   }
   static getStudy(studyIdentifier) {
@@ -3375,7 +3457,7 @@ class ArcInvestigation {
     const matchValue_1 = tryFindIndex((x_1) => x_1 === assayIdent_1, study.RegisteredAssayIdentifiers);
     if (matchValue_1 == null) {
     } else {
-      throw new Exception(`Cannot create assay with name ${assayIdent_1}, as assay names must be unique and assay at index ${value(matchValue_1)} has the same name.`);
+      throw new Exception(`Cannot create assay with name ${assayIdent_1}, as assay names must be unique and assay at index ${matchValue_1} has the same name.`);
     }
     study.RegisterAssay(assayIdentifier);
   }
@@ -3464,7 +3546,7 @@ class ArcInvestigation {
     const matchValue = tryFindIndex((x) => x.Identifier === workflow_1.Identifier, this$.Workflows);
     if (matchValue == null) {
     } else {
-      throw new Exception(`Cannot create workflow with name ${workflow_1.Identifier}, as workflow names must be unique and workflow at index ${value(matchValue)} has the same name.`);
+      throw new Exception(`Cannot create workflow with name ${workflow_1.Identifier}, as workflow names must be unique and workflow at index ${matchValue} has the same name.`);
     }
     workflow.Investigation = this$;
     void this$.Workflows.push(workflow);
@@ -3506,14 +3588,14 @@ class ArcInvestigation {
     iterate((w_1) => {
       const matchValue = tryFindIndex((swi) => swi === workflowIdentifier, w_1.SubWorkflowIdentifiers);
       if (matchValue != null) {
-        const swiIndex = value(matchValue) | 0;
+        const swiIndex = matchValue | 0;
         w_1.SubWorkflowIdentifiers.splice(swiIndex, 1);
       }
     }, this$.Workflows);
     iterate((r) => {
       const matchValue_1 = tryFindIndex((wi) => wi === workflowIdentifier, r.WorkflowIdentifiers);
       if (matchValue_1 != null) {
-        const wiIndex = value(matchValue_1) | 0;
+        const wiIndex = matchValue_1 | 0;
         r.WorkflowIdentifiers.splice(wiIndex, 1);
       }
     }, this$.Runs);
@@ -3541,7 +3623,7 @@ class ArcInvestigation {
     if (matchValue == null) {
       throw new Exception(ArcTypesAux_ErrorMsgs_unableToFindWorkflowIdentifier(workflowIdentifier, this$.Identifier));
     } else {
-      return value(matchValue);
+      return matchValue;
     }
   }
   static getWorkflow(workflowIdentifier) {
@@ -3573,15 +3655,19 @@ class ArcInvestigation {
     const matchValue = tryFindIndex((x) => x.Identifier === workflow_1.Identifier, removeAt(index, this$.Workflows));
     if (matchValue == null) {
     } else {
-      throw new Exception(`Cannot create workflow with name ${workflow_1.Identifier}, as workflow names must be unique and workflow at index ${value(matchValue)} has the same name.`);
+      throw new Exception(`Cannot create workflow with name ${workflow_1.Identifier}, as workflow names must be unique and workflow at index ${matchValue} has the same name.`);
     }
     workflow.Investigation = this$;
     setItem(this$.Workflows, index, workflow);
   }
   SetWorkflow(workflowIdentifier, workflow) {
     const this$ = this;
-    const index = this$.GetWorkflowIndex(workflowIdentifier) | 0;
-    this$.SetWorkflowAt(index, workflow);
+    const index = this$.Workflows.findIndex((w) => w.Identifier === workflowIdentifier) | 0;
+    if (index === -1) {
+      this$.AddWorkflow(workflow);
+    } else {
+      this$.SetWorkflowAt(index, workflow);
+    }
   }
   static setWorkflow(workflowIdentifier, workflow) {
     return (inv) => {
@@ -3622,7 +3708,7 @@ class ArcInvestigation {
     const matchValue = tryFindIndex((x) => x.Identifier === run_1.Identifier, this$.Runs);
     if (matchValue == null) {
     } else {
-      throw new Exception(`Cannot create run with name ${run_1.Identifier}, as run names must be unique and run at index ${value(matchValue)} has the same name.`);
+      throw new Exception(`Cannot create run with name ${run_1.Identifier}, as run names must be unique and run at index ${matchValue} has the same name.`);
     }
     run.Investigation = this$;
     void this$.Runs.push(run);
@@ -3685,7 +3771,7 @@ class ArcInvestigation {
     if (matchValue == null) {
       throw new Exception(ArcTypesAux_ErrorMsgs_unableToFindRunIdentifier(runIdentifier, this$.Identifier));
     } else {
-      return value(matchValue);
+      return matchValue;
     }
   }
   static getRun(runIdentifier) {
@@ -3717,15 +3803,19 @@ class ArcInvestigation {
     const matchValue = tryFindIndex((x) => x.Identifier === run_1.Identifier, removeAt(index, this$.Runs));
     if (matchValue == null) {
     } else {
-      throw new Exception(`Cannot create run with name ${run_1.Identifier}, as run names must be unique and run at index ${value(matchValue)} has the same name.`);
+      throw new Exception(`Cannot create run with name ${run_1.Identifier}, as run names must be unique and run at index ${matchValue} has the same name.`);
     }
     run.Investigation = this$;
     setItem(this$.Runs, index, run);
   }
   SetRun(runIdentifier, run) {
     const this$ = this;
-    const index = this$.GetRunIndex(runIdentifier) | 0;
-    this$.SetRunAt(index, run);
+    const index = this$.Runs.findIndex((r) => r.Identifier === runIdentifier) | 0;
+    if (index === -1) {
+      this$.AddRun(run);
+    } else {
+      this$.SetRunAt(index, run);
+    }
   }
   static setRunAt(index, run) {
     return (inv) => {