@nfdi4plants/arctrl 3.2.3 → 3.3.0

package/dist/ts/ts/CWL/CWLProcessingUnit.js

@@ -1,13 +1,22 @@
+import { substring } from '../../node_modules/@fable-org/fable-library-ts/String.js';
+import { CWLToolDescription, CWLToolDescription_$reflection } from './ToolDescription.js';
+import { CWLWorkflowDescription, CWLWorkflowDescription_$reflection } from './WorkflowDescription.js';
+import { CWLExpressionToolDescription, CWLExpressionToolDescription_$reflection } from './ExpressionToolDescription.js';
+import { CWLOperationDescription, CWLOperationDescription_$reflection } from './OperationDescription.js';
+import { RawYaml_$reflection } from './CWLTypes.js';
+import { HintEntry } from './Requirements.js';
+import { choose } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { Union } from '../../node_modules/@fable-org/fable-library-ts/Types.js';
-import { CWLToolDescription_$reflection, CWLToolDescription } from './ToolDescription.js';
-import { CWLWorkflowDescription_$reflection, CWLWorkflowDescription } from './WorkflowDescription.js';
-import { CWLExpressionToolDescription_$reflection, CWLExpressionToolDescription } from './ExpressionToolDescription.js';
-import { CWLOperationDescription_$reflection, CWLOperationDescription } from './OperationDescription.js';
 import { union_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
-import { HintEntry_get_tryAsRequirement } from './Requirements.js';
-import { choose } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { WorkflowStepRun_RunCommandLineTool, WorkflowStepRun_RunWorkflow, WorkflowStepRun_RunExpressionTool, WorkflowStepRun_RunOperation } from './WorkflowSteps.js';
 
+function LocalReference_withoutHash(reference) {
+  if (reference.startsWith("#")) {
+    return substring(reference, 1);
+  } else {
+    return reference;
+  }
+}
 function CWLProcessingUnit_CommandLineTool(Item) {
   return new CWLProcessingUnit(0, [Item]);
 }
@@ -20,6 +29,9 @@ function CWLProcessingUnit_ExpressionTool(Item) {
 function CWLProcessingUnit_Operation(Item) {
   return new CWLProcessingUnit(3, [Item]);
 }
+function CWLProcessingUnit_RawProcess(Item) {
+  return new CWLProcessingUnit(4, [Item]);
+}
 class CWLProcessingUnit extends Union {
   constructor(tag, fields) {
     super();
@@ -27,132 +39,261 @@ class CWLProcessingUnit extends Union {
     this.fields = fields;
   }
   cases() {
-    return ["CommandLineTool", "Workflow", "ExpressionTool", "Operation"];
+    return ["CommandLineTool", "Workflow", "ExpressionTool", "Operation", "RawProcess"];
   }
-}
-function CWLProcessingUnit_$reflection() {
-  return union_type("ARCtrl.CWL.CWLProcessingUnit", [], CWLProcessingUnit, () => [[["Item", CWLToolDescription_$reflection()]], [["Item", CWLWorkflowDescription_$reflection()]], [["Item", CWLExpressionToolDescription_$reflection()]], [["Item", CWLOperationDescription_$reflection()]]]);
-}
-function CWLProcessingUnit_getInputs_30922B92(processingUnit) {
-  switch (processingUnit.tag) {
-    case /* Workflow */
-    1: {
-      const workflow = processingUnit.fields[0];
-      return CWLWorkflowDescription.getInputs(workflow);
-    }
-    case /* ExpressionTool */
-    2: {
-      const tool_1 = processingUnit.fields[0];
-      return CWLExpressionToolDescription.getInputsOrEmpty(tool_1);
-    }
-    case /* Operation */
-    3: {
-      const operation = processingUnit.fields[0];
-      return CWLOperationDescription.getInputs(operation);
-    }
-    default: {
-      const tool = processingUnit.fields[0];
-      return CWLToolDescription.getInputsOrEmpty(tool);
-    }
+  static commandLineTool(value) {
+    return CWLProcessingUnit_CommandLineTool(value);
   }
-}
-function CWLProcessingUnit_getOutputs_30922B92(processingUnit) {
-  switch (processingUnit.tag) {
-    case /* Workflow */
-    1: {
-      const workflow = processingUnit.fields[0];
-      return CWLWorkflowDescription.getOutputs(workflow);
-    }
-    case /* ExpressionTool */
-    2: {
-      const tool_1 = processingUnit.fields[0];
-      return CWLExpressionToolDescription.getOutputs(tool_1);
-    }
-    case /* Operation */
-    3: {
-      const operation = processingUnit.fields[0];
-      return CWLOperationDescription.getOutputs(operation);
-    }
-    default: {
-      const tool = processingUnit.fields[0];
-      return CWLToolDescription.getOutputs(tool);
-    }
+  static workflow(value) {
+    return CWLProcessingUnit_Workflow(value);
   }
-}
-function CWLProcessingUnit_getRequirements_30922B92(processingUnit) {
-  switch (processingUnit.tag) {
-    case /* Workflow */
-    1: {
-      const workflow = processingUnit.fields[0];
-      return CWLWorkflowDescription.getRequirementsOrEmpty(workflow);
-    }
-    case /* ExpressionTool */
-    2: {
-      const tool_1 = processingUnit.fields[0];
-      return CWLExpressionToolDescription.getRequirementsOrEmpty(tool_1);
-    }
-    case /* Operation */
-    3: {
-      const operation = processingUnit.fields[0];
-      return CWLOperationDescription.getRequirementsOrEmpty(operation);
-    }
-    default: {
-      const tool = processingUnit.fields[0];
-      return CWLToolDescription.getRequirementsOrEmpty(tool);
-    }
+  static expressionTool(value) {
+    return CWLProcessingUnit_ExpressionTool(value);
   }
-}
-function CWLProcessingUnit_getHints_30922B92(processingUnit) {
-  switch (processingUnit.tag) {
-    case /* Workflow */
-    1: {
-      const workflow = processingUnit.fields[0];
-      return CWLWorkflowDescription.getHintsOrEmpty(workflow);
-    }
-    case /* ExpressionTool */
-    2: {
-      const tool_1 = processingUnit.fields[0];
-      return CWLExpressionToolDescription.getHintsOrEmpty(tool_1);
+  static operation(value) {
+    return CWLProcessingUnit_Operation(value);
+  }
+  static rawProcess(value) {
+    return CWLProcessingUnit_RawProcess(value);
+  }
+  /**
+   * Returns a new list of the inputs of the process that are objects, for every kind of process. A change of the list
+   * changes nothing in the process.
+   */
+  static getInputValues(processingUnit) {
+    switch (processingUnit.tag) {
+      case /* Workflow */
+      1: {
+        const workflow = processingUnit.fields[0];
+        return CWLWorkflowDescription.getInputValues(workflow);
+      }
+      case /* ExpressionTool */
+      2: {
+        const tool_1 = processingUnit.fields[0];
+        return CWLExpressionToolDescription.getInputValuesOrEmpty(tool_1);
+      }
+      case /* Operation */
+      3: {
+        const operation = processingUnit.fields[0];
+        return CWLOperationDescription.getInputValues(operation);
+      }
+      case /* RawProcess */
+      4:
+        return [];
+      default: {
+        const tool = processingUnit.fields[0];
+        return CWLToolDescription.getInputValuesOrEmpty(tool);
+      }
     }
-    case /* Operation */
-    3: {
-      const operation = processingUnit.fields[0];
-      return CWLOperationDescription.getHintsOrEmpty(operation);
+  }
+  /**
+   * Returns a new list of the outputs of the process that are objects, for every kind of process. A change of the list
+   * changes nothing in the process.
+   */
+  static getOutputValues(processingUnit) {
+    switch (processingUnit.tag) {
+      case /* Workflow */
+      1: {
+        const workflow = processingUnit.fields[0];
+        return CWLWorkflowDescription.getOutputValues(workflow);
+      }
+      case /* ExpressionTool */
+      2: {
+        const tool_1 = processingUnit.fields[0];
+        return CWLExpressionToolDescription.getOutputValues(tool_1);
+      }
+      case /* Operation */
+      3: {
+        const operation = processingUnit.fields[0];
+        return CWLOperationDescription.getOutputValues(operation);
+      }
+      case /* RawProcess */
+      4:
+        return [];
+      default: {
+        const tool = processingUnit.fields[0];
+        return CWLToolDescription.getOutputValues(tool);
+      }
     }
-    default: {
-      const tool = processingUnit.fields[0];
-      return CWLToolDescription.getHintsOrEmpty(tool);
+  }
+  /**
+   * Returns requirements for all CWL processing unit variants.
+   */
+  static getRequirements(processingUnit) {
+    switch (processingUnit.tag) {
+      case /* Workflow */
+      1: {
+        const workflow = processingUnit.fields[0];
+        return CWLWorkflowDescription.getRequirementsOrEmpty(workflow);
+      }
+      case /* ExpressionTool */
+      2: {
+        const tool_1 = processingUnit.fields[0];
+        return CWLExpressionToolDescription.getRequirementsOrEmpty(tool_1);
+      }
+      case /* Operation */
+      3: {
+        const operation = processingUnit.fields[0];
+        return CWLOperationDescription.getRequirementsOrEmpty(operation);
+      }
+      case /* RawProcess */
+      4:
+        return [];
+      default: {
+        const tool = processingUnit.fields[0];
+        return CWLToolDescription.getRequirementsOrEmpty(tool);
+      }
     }
   }
-}
-function CWLProcessingUnit_getIntent_30922B92(processingUnit) {
-  switch (processingUnit.tag) {
-    case /* Workflow */
-    1: {
-      const workflow = processingUnit.fields[0];
-      return CWLWorkflowDescription.getIntentOrEmpty(workflow);
+  /**
+   * Returns hints for all CWL processing unit variants.
+   */
+  static getHints(processingUnit) {
+    switch (processingUnit.tag) {
+      case /* Workflow */
+      1: {
+        const workflow = processingUnit.fields[0];
+        return CWLWorkflowDescription.getHintsOrEmpty(workflow);
+      }
+      case /* ExpressionTool */
+      2: {
+        const tool_1 = processingUnit.fields[0];
+        return CWLExpressionToolDescription.getHintsOrEmpty(tool_1);
+      }
+      case /* Operation */
+      3: {
+        const operation = processingUnit.fields[0];
+        return CWLOperationDescription.getHintsOrEmpty(operation);
+      }
+      case /* RawProcess */
+      4:
+        return [];
+      default: {
+        const tool = processingUnit.fields[0];
+        return CWLToolDescription.getHintsOrEmpty(tool);
+      }
     }
-    case /* ExpressionTool */
-    2: {
-      const tool_1 = processingUnit.fields[0];
-      return CWLExpressionToolDescription.getIntentOrEmpty(tool_1);
+  }
+  /**
+   * Returns intent for all CWL processing unit variants.
+   */
+  static getIntent(processingUnit) {
+    switch (processingUnit.tag) {
+      case /* Workflow */
+      1: {
+        const workflow = processingUnit.fields[0];
+        return CWLWorkflowDescription.getIntentOrEmpty(workflow);
+      }
+      case /* ExpressionTool */
+      2: {
+        const tool_1 = processingUnit.fields[0];
+        return CWLExpressionToolDescription.getIntentOrEmpty(tool_1);
+      }
+      case /* Operation */
+      3: {
+        const operation = processingUnit.fields[0];
+        return CWLOperationDescription.getIntentOrEmpty(operation);
+      }
+      case /* RawProcess */
+      4:
+        return [];
+      default: {
+        const tool = processingUnit.fields[0];
+        return CWLToolDescription.getIntentOrEmpty(tool);
+      }
     }
-    case /* Operation */
-    3: {
-      const operation = processingUnit.fields[0];
-      return CWLOperationDescription.getIntentOrEmpty(operation);
+  }
+  /**
+   * Returns known requirement hints only, dropping unknown extension hints.
+   */
+  static getKnownHints(processingUnit) {
+    let collection;
+    const source = CWLProcessingUnit.getHints(processingUnit);
+    collection = choose(HintEntry.tryAsRequirement, source);
+    return Array.from(collection);
+  }
+  /**
+   * True when both values wrap the same description object. Two union values around one object are the same process.
+   */
+  static isSameObject(left, right) {
+    let matchResult = void 0, leftTool = void 0, rightTool = void 0, leftWorkflow = void 0, rightWorkflow = void 0, leftTool_1 = void 0, rightTool_1 = void 0, leftOperation = void 0, rightOperation = void 0, leftRaw = void 0, rightRaw = void 0;
+    switch (left.tag) {
+      case /* Workflow */
+      1: {
+        if (right.tag === /* Workflow */
+        1) {
+          matchResult = 1;
+          leftWorkflow = left.fields[0];
+          rightWorkflow = right.fields[0];
+        } else {
+          matchResult = 5;
+        }
+        break;
+      }
+      case /* ExpressionTool */
+      2: {
+        if (right.tag === /* ExpressionTool */
+        2) {
+          matchResult = 2;
+          leftTool_1 = left.fields[0];
+          rightTool_1 = right.fields[0];
+        } else {
+          matchResult = 5;
+        }
+        break;
+      }
+      case /* Operation */
+      3: {
+        if (right.tag === /* Operation */
+        3) {
+          matchResult = 3;
+          leftOperation = left.fields[0];
+          rightOperation = right.fields[0];
+        } else {
+          matchResult = 5;
+        }
+        break;
+      }
+      case /* RawProcess */
+      4: {
+        if (right.tag === /* RawProcess */
+        4) {
+          matchResult = 4;
+          leftRaw = left.fields[0];
+          rightRaw = right.fields[0];
+        } else {
+          matchResult = 5;
+        }
+        break;
+      }
+      default:
+        if (right.tag === /* CommandLineTool */
+        0) {
+          matchResult = 0;
+          leftTool = left.fields[0];
+          rightTool = right.fields[0];
+        } else {
+          matchResult = 5;
+        }
     }
-    default: {
-      const tool = processingUnit.fields[0];
-      return CWLToolDescription.getIntentOrEmpty(tool);
+    switch (matchResult) {
+      case 0:
+        return leftTool === rightTool;
+      case 1:
+        return leftWorkflow === rightWorkflow;
+      case 2:
+        return leftTool_1 === rightTool_1;
+      case 3:
+        return leftOperation === rightOperation;
+      case 4:
+        return leftRaw === rightRaw;
+      default:
+        return false;
     }
   }
 }
-function CWLProcessingUnit_getKnownHints_30922B92(processingUnit) {
-  let collection;
-  const source = CWLProcessingUnit_getHints_30922B92(processingUnit);
-  collection = choose(HintEntry_get_tryAsRequirement(), source);
-  return Array.from(collection);
+function CWLProcessingUnit_$reflection() {
+  return union_type("ARCtrl.CWL.CWLProcessingUnit", [], CWLProcessingUnit, () => [[["Item", CWLToolDescription_$reflection()]], [["Item", CWLWorkflowDescription_$reflection()]], [["Item", CWLExpressionToolDescription_$reflection()]], [["Item", CWLOperationDescription_$reflection()]], [["Item", RawYaml_$reflection()]]]);
 }
 function WorkflowStepRunOps_fromTool(tool) {
   return WorkflowStepRun_RunCommandLineTool(tool);
@@ -169,7 +310,7 @@ function WorkflowStepRunOps_fromOperation(operation) {
 function WorkflowStepRunOps_tryGetTool(run) {
   let matchResult = void 0, tool = void 0;
   if (run.tag === /* RunCommandLineTool */
-  1) {
+  4) {
     if (run.fields[0] instanceof CWLToolDescription) {
       matchResult = 0;
       tool = run.fields[0];
@@ -189,7 +330,7 @@ function WorkflowStepRunOps_tryGetTool(run) {
 function WorkflowStepRunOps_tryGetWorkflow(run) {
   let matchResult = void 0, workflow = void 0;
   if (run.tag === /* RunWorkflow */
-  2) {
+  5) {
     if (run.fields[0] instanceof CWLWorkflowDescription) {
       matchResult = 0;
       workflow = run.fields[0];
@@ -209,7 +350,7 @@ function WorkflowStepRunOps_tryGetWorkflow(run) {
 function WorkflowStepRunOps_tryGetExpressionTool(run) {
   let matchResult = void 0, expressionTool = void 0;
   if (run.tag === /* RunExpressionTool */
-  3) {
+  6) {
     if (run.fields[0] instanceof CWLExpressionToolDescription) {
       matchResult = 0;
       expressionTool = run.fields[0];
@@ -229,7 +370,7 @@ function WorkflowStepRunOps_tryGetExpressionTool(run) {
 function WorkflowStepRunOps_tryGetOperation(run) {
   let matchResult = void 0, operation = void 0;
   if (run.tag === /* RunOperation */
-  4) {
+  7) {
     if (run.fields[0] instanceof CWLOperationDescription) {
       matchResult = 0;
       operation = run.fields[0];
@@ -246,5 +387,53 @@ function WorkflowStepRunOps_tryGetOperation(run) {
       return void 0;
   }
 }
+function WorkflowStepRunOps_tryGetProcessingUnit(run) {
+  switch (run.tag) {
+    case /* RunWorkflow */
+    5: {
+      const option_3 = WorkflowStepRunOps_tryGetWorkflow(run);
+      if (option_3 != null) {
+        return CWLProcessingUnit_Workflow(option_3);
+      } else {
+        return void 0;
+      }
+    }
+    case /* RunExpressionTool */
+    6: {
+      const option_5 = WorkflowStepRunOps_tryGetExpressionTool(run);
+      if (option_5 != null) {
+        return CWLProcessingUnit_ExpressionTool(option_5);
+      } else {
+        return void 0;
+      }
+    }
+    case /* RunOperation */
+    7: {
+      const option_7 = WorkflowStepRunOps_tryGetOperation(run);
+      if (option_7 != null) {
+        return CWLProcessingUnit_Operation(option_7);
+      } else {
+        return void 0;
+      }
+    }
+    case /* RunString */
+    0:
+    case /* RunImport */
+    1:
+    case /* RunMixed */
+    2:
+    case /* RunRaw */
+    3:
+      return void 0;
+    default: {
+      const option_1 = WorkflowStepRunOps_tryGetTool(run);
+      if (option_1 != null) {
+        return CWLProcessingUnit_CommandLineTool(option_1);
+      } else {
+        return void 0;
+      }
+    }
+  }
+}
 
-export { CWLProcessingUnit, CWLProcessingUnit_$reflection, CWLProcessingUnit_CommandLineTool, CWLProcessingUnit_ExpressionTool, CWLProcessingUnit_Operation, CWLProcessingUnit_Workflow, CWLProcessingUnit_getHints_30922B92, CWLProcessingUnit_getInputs_30922B92, CWLProcessingUnit_getIntent_30922B92, CWLProcessingUnit_getKnownHints_30922B92, CWLProcessingUnit_getOutputs_30922B92, CWLProcessingUnit_getRequirements_30922B92, WorkflowStepRunOps_fromExpressionTool, WorkflowStepRunOps_fromOperation, WorkflowStepRunOps_fromTool, WorkflowStepRunOps_fromWorkflow, WorkflowStepRunOps_tryGetExpressionTool, WorkflowStepRunOps_tryGetOperation, WorkflowStepRunOps_tryGetTool, WorkflowStepRunOps_tryGetWorkflow };
+export { CWLProcessingUnit, CWLProcessingUnit_$reflection, CWLProcessingUnit_CommandLineTool, CWLProcessingUnit_ExpressionTool, CWLProcessingUnit_Operation, CWLProcessingUnit_RawProcess, CWLProcessingUnit_Workflow, LocalReference_withoutHash, WorkflowStepRunOps_fromExpressionTool, WorkflowStepRunOps_fromOperation, WorkflowStepRunOps_fromTool, WorkflowStepRunOps_fromWorkflow, WorkflowStepRunOps_tryGetExpressionTool, WorkflowStepRunOps_tryGetOperation, WorkflowStepRunOps_tryGetProcessingUnit, WorkflowStepRunOps_tryGetTool, WorkflowStepRunOps_tryGetWorkflow };