@nfdi4plants/arctrl 3.2.3 → 3.3.0

package/dist/ts/ts/ARC.js

@@ -1,5 +1,5 @@
 import { FileSystem } from './FileSystem/FileSystem.js';
-import { unwrap, defaultArg, value } from '../node_modules/@fable-org/fable-library-ts/Option.js';
+import { unwrap, defaultArg, value, toArray as toArray$1 } from '../node_modules/@fable-org/fable-library-ts/Option.js';
 import { License } from './License.js';
 import { ArcInvestigation, ArcInvestigation_$reflection } from './Core/ArcTypes.js';
 import { append, map, choose, item, fold, concat, contains as contains$2, tryPick, equalsWith } from '../node_modules/@fable-org/fable-library-ts/Array.js';
@@ -14,11 +14,11 @@ import { toArray, contains, delay, append as append$1, singleton, iterate, tryFi
 import { all } from './CrossAsync.js';
 import { split, getAssayFolderPath, getRunFolderPath, getWorkflowFolderPath, getStudyFolderPath, combine, normalizePathKey } from './FileSystem/Path.js';
 import { ARCtrl_ArcAssay__ArcAssay_ToDeleteContract, ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49, ARCtrl_ArcAssay__ArcAssay_ToUpdateContract, ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F } from './Contract/ArcAssay.js';
-import { ARCtrl_ArcRun__ArcRun_ToDeleteContract, ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F, ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static, ARCtrl_ArcRun__ArcRun_tryYMLFromReadContract_Static } from './Contract/ArcRun.js';
-import { ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract, ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F, ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static } from './Contract/ArcWorkflow.js';
+import { ARCtrl_ArcRun__ArcRun_ToDeleteContract, ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_TryToCWLContract_Z2D283928, ARCtrl_ArcRun__ArcRun_TryToYMLContract_Z2D283928, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F, ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static, ARCtrl_ArcRun__ArcRun_tryYMLFromReadContract_Static } from './Contract/ArcRun.js';
+import { ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract, ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_TryToCWLContract_Z2D283928, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F, ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static, CWLFileReading_decodeCWLFile } from './Contract/ArcWorkflow.js';
 import { join, toFail, printf, replace, concat as concat$1, toText } from '../node_modules/@fable-org/fable-library-ts/String.js';
 import { ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract, ARCtrl_ArcInvestigation__ArcInvestigation_ToCreateContract, ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F } from './Contract/ArcInvestigation.js';
-import { createMissingIdentifier, Workflow_cwlFileNameFromIdentifier, Run_cwlFileNameFromIdentifier } from './Core/Helper/Identifier.js';
+import { createMissingIdentifier, Workflow_cwlFileNameFromIdentifier, Run_cwlFileNameFromIdentifier, Run_ymlFileNameFromIdentifier } from './Core/Helper/Identifier.js';
 import { ofSeq, contains as contains$1, unionMany, FSharpSet__Contains } from '../node_modules/@fable-org/fable-library-ts/Set.js';
 import { ResizeArray_iter, ResizeArray_map } from './Core/Helper/Collections.js';
 import { FileSystemTree_Folder, FileSystemTree, FileSystemTree_File } from './FileSystem/FileSystemTree.js';
@@ -38,7 +38,6 @@ import { ValidationPackagesConfigHelper_ConfigFilePath, ARCtrl_ValidationPackage
 import { ofInvestigation } from './WorkflowGraph/Adapters.js';
 import { FSharpRef } from '../node_modules/@fable-org/fable-library-ts/Types.js';
 import { class_type } from '../node_modules/@fable-org/fable-library-ts/Reflection.js';
-import { Decode_decodeCWLProcessingUnit } from './CWL/Decode.js';
 
 class ARC extends ArcInvestigation {
   constructor(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, workflows, runs, registeredStudyIdentifiers, comments, remarks, fs, license) {
@@ -50,7 +49,7 @@ class ARC extends ArcInvestigation {
     this._fs = (fs_1 = defaultArg(fs, FileSystem.create({
       tree: FileSystemTree_Folder("", [])
     })), ARCAux_updateFSByARC(this$.contents, license, fs_1));
-    this["init@145"] = 1;
+    this["init@179"] = 1;
   }
   get FileSystem() {
     const this$ = this;
@@ -91,7 +90,7 @@ class ARC extends ArcInvestigation {
         license_1.Path = value(path);
       }
     } else {
-      const license = value(matchValue);
+      const license = matchValue;
       license.Type = "fulltext";
       license.Content = fulltext;
       if (path != null) {
@@ -120,7 +119,7 @@ class ARC extends ArcInvestigation {
               const matchValue = rc_1.DTOType;
               let matchResult = void 0;
               if (matchValue != null) {
-                switch (value(matchValue)) {
+                switch (matchValue) {
                   case "ISA_Assay": {
                     matchResult = 0;
                     break;
@@ -493,9 +492,9 @@ class ARC extends ArcInvestigation {
       let col_1 = void 0;
       let matchResult = void 0, col_2 = void 0;
       if (col != null) {
-        if (col_1 = value(col), col_1.Header.IsDataColumn) {
+        if (col_1 = col, col_1.Header.IsDataColumn) {
           matchResult = 0;
-          col_2 = value(col);
+          col_2 = col;
         } else {
           matchResult = 1;
         }
@@ -603,7 +602,7 @@ class ARC extends ArcInvestigation {
       if (registeredStudyOpt == null) {
         this$.AddStudy(study);
       } else {
-        const registeredStudy = value(registeredStudyOpt);
+        const registeredStudy = registeredStudyOpt;
         registeredStudy.UpdateReferenceByStudyFile(study, true);
       }
       const datamap = ARCAux_getStudyDatamapFromContracts(study.Identifier, contracts);
@@ -617,7 +616,7 @@ class ARC extends ArcInvestigation {
       if (registeredAssayOpt == null) {
         this$.AddAssay(assay);
       } else {
-        const registeredAssay = value(registeredAssayOpt);
+        const registeredAssay = registeredAssayOpt;
         registeredAssay.UpdateReferenceByAssayFile(assay, true);
       }
       const assay_1 = find((a_2) => a_2.Identifier === assay.Identifier, this$.Assays);
@@ -636,13 +635,14 @@ class ARC extends ArcInvestigation {
       const cwlFilePath = Workflow_cwlFileNameFromIdentifier(workflow.Identifier);
       let resolvedCwl;
       const option_1 = cwl;
-      resolvedCwl = option_1 != null ? resolveRunReferencesFromLookup(cwlFilePath, value(option_1), tryGetCWLByPath) : void 0;
+      resolvedCwl = option_1 != null ? resolveRunReferencesFromLookup(cwlFilePath, option_1, tryGetCWLByPath) : void 0;
       if (workflow.Datamap == null) {
         workflow.Datamap = datamap_2;
       }
       workflow.CWLDescription = resolvedCwl;
       this$.AddWorkflow(workflow);
       workflow.StaticHash = workflow.GetLightHashCode() | 0;
+      workflow.CWLStaticHash = workflow.GetCWLHashCode() | 0;
     });
     runs.forEach((run) => {
       const datamap_3 = ARCAux_getRunDatamapFromContracts(run.Identifier, contracts);
@@ -651,7 +651,7 @@ class ARC extends ArcInvestigation {
       const cwlFilePath_1 = Run_cwlFileNameFromIdentifier(run.Identifier);
       let resolvedCwl_1;
       const option_3 = cwl_1;
-      resolvedCwl_1 = option_3 != null ? resolveRunReferencesFromLookup(cwlFilePath_1, value(option_3), tryGetCWLByPath) : void 0;
+      resolvedCwl_1 = option_3 != null ? resolveRunReferencesFromLookup(cwlFilePath_1, option_3, tryGetCWLByPath) : void 0;
       if (run.Datamap == null) {
         run.Datamap = datamap_3;
       }
@@ -659,6 +659,8 @@ class ARC extends ArcInvestigation {
       run.CWLDescription = resolvedCwl_1;
       this$.AddRun(run);
       run.StaticHash = run.GetLightHashCode() | 0;
+      run.CWLStaticHash = run.GetCWLHashCode() | 0;
+      run.CWLInputStaticHash = run.GetCWLInputHashCode() | 0;
     });
     iterate((a_3) => {
       a_3.StaticHash = a_3.GetLightHashCode() | 0;
@@ -710,6 +712,7 @@ class ARC extends ArcInvestigation {
       }));
     }, this$.Assays), delay(() => append$1(collect((w) => {
       w.StaticHash = w.GetLightHashCode() | 0;
+      w.CWLStaticHash = w.GetCWLHashCode() | 0;
       return append$1(ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(w, true), delay(() => {
         if (w.Datamap != null) {
           const dm_2 = value(w.Datamap);
@@ -721,6 +724,8 @@ class ARC extends ArcInvestigation {
       }));
     }, this$.Workflows), delay(() => append$1(collect((r) => {
       r.StaticHash = r.GetLightHashCode() | 0;
+      r.CWLStaticHash = r.GetCWLHashCode() | 0;
+      r.CWLInputStaticHash = r.GetCWLInputHashCode() | 0;
       return append$1(ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(r, true), delay(() => {
         if (r.Datamap != null) {
           const dm_3 = value(r.Datamap);
@@ -761,12 +766,12 @@ class ARC extends ArcInvestigation {
               const matchValue = s.Datamap;
               let matchResult = void 0, dm_2 = void 0, dm_3 = void 0;
               if (matchValue != null) {
-                if (dm = value(matchValue), dm.StaticHash === 0) {
+                if (dm = matchValue, dm.StaticHash === 0) {
                   matchResult = 0;
-                  dm_2 = value(matchValue);
-                } else if (dm_1 = value(matchValue), dm_1.StaticHash !== safeHash(dm_1)) {
+                  dm_2 = matchValue;
+                } else if (dm_1 = matchValue, dm_1.StaticHash !== safeHash(dm_1)) {
                   matchResult = 1;
-                  dm_3 = value(matchValue);
+                  dm_3 = matchValue;
                 } else {
                   matchResult = 2;
                 }
@@ -797,12 +802,12 @@ class ARC extends ArcInvestigation {
               const matchValue_1 = a.Datamap;
               let matchResult_1 = void 0, dm_6 = void 0, dm_7 = void 0;
               if (matchValue_1 != null) {
-                if (dm_4 = value(matchValue_1), dm_4.StaticHash === 0) {
+                if (dm_4 = matchValue_1, dm_4.StaticHash === 0) {
                   matchResult_1 = 0;
-                  dm_6 = value(matchValue_1);
-                } else if (dm_5 = value(matchValue_1), dm_5.StaticHash !== safeHash(dm_5)) {
+                  dm_6 = matchValue_1;
+                } else if (dm_5 = matchValue_1, dm_5.StaticHash !== safeHash(dm_5)) {
                   matchResult_1 = 1;
-                  dm_7 = value(matchValue_1);
+                  dm_7 = matchValue_1;
                 } else {
                   matchResult_1 = 2;
                 }
@@ -827,82 +832,93 @@ class ARC extends ArcInvestigation {
             }));
           }, this$.Assays), delay(() => append$1(collect((w) => {
             const hash_3 = w.GetLightHashCode() | 0;
-            return append$1(w.StaticHash === 0 ? ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(w, true) : w.StaticHash !== hash_3 ? singleton(ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(w)) : empty(), delay(() => {
-              let dm_8 = void 0, dm_9 = void 0;
+            return append$1(w.StaticHash === 0 ? append$1(ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(w, true), delay(() => {
+              w.CWLStaticHash = w.GetCWLHashCode() | 0;
+              return empty();
+            })) : w.StaticHash !== hash_3 ? singleton(ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(w)) : empty(), delay(() => {
               w.StaticHash = hash_3 | 0;
-              const matchValue_2 = w.Datamap;
-              let matchResult_2 = void 0, dm_10 = void 0, dm_11 = void 0;
-              if (matchValue_2 != null) {
-                if (dm_8 = value(matchValue_2), dm_8.StaticHash === 0) {
-                  matchResult_2 = 0;
-                  dm_10 = value(matchValue_2);
-                } else if (dm_9 = value(matchValue_2), dm_9.StaticHash !== safeHash(dm_9)) {
-                  matchResult_2 = 1;
-                  dm_11 = value(matchValue_2);
+              return append$1(ARCAux_workflowFileContracts(w), delay(() => {
+                let dm_8 = void 0, dm_9 = void 0;
+                const matchValue_2 = w.Datamap;
+                let matchResult_2 = void 0, dm_10 = void 0, dm_11 = void 0;
+                if (matchValue_2 != null) {
+                  if (dm_8 = matchValue_2, dm_8.StaticHash === 0) {
+                    matchResult_2 = 0;
+                    dm_10 = matchValue_2;
+                  } else if (dm_9 = matchValue_2, dm_9.StaticHash !== safeHash(dm_9)) {
+                    matchResult_2 = 1;
+                    dm_11 = matchValue_2;
+                  } else {
+                    matchResult_2 = 2;
+                  }
                 } else {
                   matchResult_2 = 2;
                 }
-              } else {
-                matchResult_2 = 2;
-              }
-              switch (matchResult_2) {
-                case 0:
-                  return append$1(singleton(ARCtrl_Datamap__Datamap_ToCreateContractForWorkflow_Z721C83C5(dm_10, w.Identifier)), delay(() => {
-                    dm_10.StaticHash = safeHash(dm_10) | 0;
+                switch (matchResult_2) {
+                  case 0:
+                    return append$1(singleton(ARCtrl_Datamap__Datamap_ToCreateContractForWorkflow_Z721C83C5(dm_10, w.Identifier)), delay(() => {
+                      dm_10.StaticHash = safeHash(dm_10) | 0;
+                      return empty();
+                    }));
+                  case 1:
+                    return append$1(singleton(ARCtrl_Datamap__Datamap_ToUpdateContractForWorkflow_Z721C83C5(dm_11, w.Identifier)), delay(() => {
+                      dm_11.StaticHash = safeHash(dm_11) | 0;
+                      return empty();
+                    }));
+                  default: {
                     return empty();
-                  }));
-                case 1:
-                  return append$1(singleton(ARCtrl_Datamap__Datamap_ToUpdateContractForWorkflow_Z721C83C5(dm_11, w.Identifier)), delay(() => {
-                    dm_11.StaticHash = safeHash(dm_11) | 0;
-                    return empty();
-                  }));
-                default: {
-                  return empty();
+                  }
                 }
-              }
+              }));
             }));
           }, this$.Workflows), delay(() => append$1(collect((r) => {
             const hash_4 = r.GetLightHashCode() | 0;
-            return append$1(r.StaticHash === 0 ? ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(r, true) : r.StaticHash !== hash_4 ? singleton(ARCtrl_ArcRun__ArcRun_ToUpdateContract(r)) : empty(), delay(() => {
-              let dm_12 = void 0, dm_13 = void 0;
+            return append$1(r.StaticHash === 0 ? append$1(ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(r, true), delay(() => {
+              r.CWLStaticHash = r.GetCWLHashCode() | 0;
+              r.CWLInputStaticHash = r.GetCWLInputHashCode() | 0;
+              return empty();
+            })) : r.StaticHash !== hash_4 ? singleton(ARCtrl_ArcRun__ArcRun_ToUpdateContract(r)) : empty(), delay(() => {
               r.StaticHash = hash_4 | 0;
-              const matchValue_3 = r.Datamap;
-              let matchResult_3 = void 0, dm_14 = void 0, dm_15 = void 0;
-              if (matchValue_3 != null) {
-                if (dm_12 = value(matchValue_3), dm_12.StaticHash === 0) {
-                  matchResult_3 = 0;
-                  dm_14 = value(matchValue_3);
-                } else if (dm_13 = value(matchValue_3), dm_13.StaticHash !== safeHash(dm_13)) {
-                  matchResult_3 = 1;
-                  dm_15 = value(matchValue_3);
+              return append$1(ARCAux_runFileContracts(r), delay(() => {
+                let dm_12 = void 0, dm_13 = void 0;
+                const matchValue_3 = r.Datamap;
+                let matchResult_3 = void 0, dm_14 = void 0, dm_15 = void 0;
+                if (matchValue_3 != null) {
+                  if (dm_12 = matchValue_3, dm_12.StaticHash === 0) {
+                    matchResult_3 = 0;
+                    dm_14 = matchValue_3;
+                  } else if (dm_13 = matchValue_3, dm_13.StaticHash !== safeHash(dm_13)) {
+                    matchResult_3 = 1;
+                    dm_15 = matchValue_3;
+                  } else {
+                    matchResult_3 = 2;
+                  }
                 } else {
                   matchResult_3 = 2;
                 }
-              } else {
-                matchResult_3 = 2;
-              }
-              switch (matchResult_3) {
-                case 0:
-                  return append$1(singleton(ARCtrl_Datamap__Datamap_ToCreateContractForRun_Z721C83C5(dm_14, r.Identifier)), delay(() => {
-                    dm_14.StaticHash = safeHash(dm_14) | 0;
-                    return empty();
-                  }));
-                case 1:
-                  return append$1(singleton(ARCtrl_Datamap__Datamap_ToUpdateContractForRun_Z721C83C5(dm_15, r.Identifier)), delay(() => {
-                    dm_15.StaticHash = safeHash(dm_15) | 0;
+                switch (matchResult_3) {
+                  case 0:
+                    return append$1(singleton(ARCtrl_Datamap__Datamap_ToCreateContractForRun_Z721C83C5(dm_14, r.Identifier)), delay(() => {
+                      dm_14.StaticHash = safeHash(dm_14) | 0;
+                      return empty();
+                    }));
+                  case 1:
+                    return append$1(singleton(ARCtrl_Datamap__Datamap_ToUpdateContractForRun_Z721C83C5(dm_15, r.Identifier)), delay(() => {
+                      dm_15.StaticHash = safeHash(dm_15) | 0;
+                      return empty();
+                    }));
+                  default: {
                     return empty();
-                  }));
-                default: {
-                  return empty();
+                  }
                 }
-              }
+              }));
             }));
           }, this$.Runs), delay(() => {
             const matchValue_4 = this$.License;
             if (matchValue_4 == null) {
               return empty();
             } else {
-              const l = value(matchValue_4);
+              const l = matchValue_4;
               const hash_5 = safeHash(l) | 0;
               return append$1(l.StaticHash === 0 ? singleton(l.ToCreateContract()) : l.StaticHash !== hash_5 ? singleton(l.ToUpdateContract()) : empty(), delay(() => {
                 l.StaticHash = hash_5 | 0;
@@ -977,7 +993,7 @@ class ARC extends ArcInvestigation {
     const nextStudyIdentifiers = Array.from(this$.RegisteredStudyIdentifiers);
     let nextLicense;
     const option_1 = this$.License;
-    nextLicense = option_1 != null ? (_arg = value(option_1), _arg.Copy()) : void 0;
+    nextLicense = option_1 != null ? (_arg = option_1, _arg.Copy()) : void 0;
     const fsCopy = this$._fs.Copy();
     return new ARC(this$.Identifier, unwrap(this$.Title), unwrap(this$.Description), unwrap(this$.SubmissionDate), unwrap(this$.PublicReleaseDate), nextOntologySourceReferences, nextPublications, nextContacts, nextAssays, nextStudies, nextWorkflows, nextRuns, nextStudyIdentifiers, nextComments, nextRemarks, fsCopy, unwrap(nextLicense));
   }
@@ -1023,7 +1039,7 @@ class ARC extends ArcInvestigation {
       } else {
         return FSharpSet__Contains(includeFiles, p);
       }
-    })), FileSystemTree.fromFilePaths(paths)), ignoreHidden ? FileSystemTree.filterFiles((n) => !n.startsWith("."))(tree) : tree), option_1 != null ? (tree_1 = value(option_1), ignoreHidden ? FileSystemTree.filterFolders((n_1) => !n_1.startsWith("."))(tree_1) : tree_1) : void 0), FileSystemTree.fromFilePaths([]));
+    })), FileSystemTree.fromFilePaths(paths)), ignoreHidden ? FileSystemTree.filterFiles((n) => !n.startsWith("."))(tree) : tree), option_1 != null ? (tree_1 = option_1, ignoreHidden ? FileSystemTree.filterFolders((n_1) => !n_1.startsWith("."))(tree_1) : tree_1) : void 0), FileSystemTree.fromFilePaths([]));
   }
   /**
    * Returns the FileSystemTree of the ARC with only and folders included that are considered additional payload.
@@ -1035,7 +1051,7 @@ class ARC extends ArcInvestigation {
     const registeredPayload = ofSeq(FileSystemTree.toFilePaths()(this$.GetRegisteredPayload()), {
       Compare: (x, y) => comparePrimitives(x, y) | 0
     });
-    return defaultArg((option_1 = (tree = (paths = (array = FileSystemTree.toFilePaths()(this$._fs.Copy().Tree), array.filter((p) => !FSharpSet__Contains(registeredPayload, p))), FileSystemTree.fromFilePaths(paths)), ignoreHidden ? FileSystemTree.filterFiles((n) => !n.startsWith("."))(tree) : tree), option_1 != null ? (tree_1 = value(option_1), ignoreHidden ? FileSystemTree.filterFolders((n_1) => !n_1.startsWith("."))(tree_1) : tree_1) : void 0), FileSystemTree.fromFilePaths([]));
+    return defaultArg((option_1 = (tree = (paths = (array = FileSystemTree.toFilePaths()(this$._fs.Copy().Tree), array.filter((p) => !FSharpSet__Contains(registeredPayload, p))), FileSystemTree.fromFilePaths(paths)), ignoreHidden ? FileSystemTree.filterFiles((n) => !n.startsWith("."))(tree) : tree), option_1 != null ? (tree_1 = option_1, ignoreHidden ? FileSystemTree.filterFolders((n_1) => !n_1.startsWith("."))(tree_1) : tree_1) : void 0), FileSystemTree.fromFilePaths([]));
   }
   static get DefaultContracts() {
     return ARCAux_defaultContracts;
@@ -1094,7 +1110,7 @@ class ARC extends ArcInvestigation {
     const this$ = this;
     let _arg;
     const option_1 = this$.License;
-    _arg = option_1 != null ? value(option_1) : License.GetDefaultLicense();
+    _arg = option_1 != null ? option_1 : License.GetDefaultLicense();
     return _arg.ToCreateContract();
   }
   /**
@@ -1183,6 +1199,31 @@ function ARC_$reflection() {
 function ARC_$ctor_Z443FB9BF(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, workflows, runs, registeredStudyIdentifiers, comments, remarks, fs, license) {
   return new ARC(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, workflows, runs, registeredStudyIdentifiers, comments, remarks, fs, license);
 }
+function ARCAux_fileContract(path, staticHash, hash, contractOf) {
+  if (staticHash === hash) {
+    return void 0;
+  } else if (hash === 0) {
+    return Contract.createDelete(path);
+  } else if (staticHash === 0) {
+    return contractOf("CREATE");
+  } else {
+    return contractOf("UPDATE");
+  }
+}
+function ARCAux_runFileContracts(run) {
+  const cwlHash = run.GetCWLHashCode() | 0;
+  const ymlHash = run.GetCWLInputHashCode() | 0;
+  const contracts = choose((x) => x, [ARCAux_fileContract(Run_cwlFileNameFromIdentifier(run.Identifier), run.CWLStaticHash, cwlHash, (operation) => ARCtrl_ArcRun__ArcRun_TryToCWLContract_Z2D283928(run, operation)), ARCAux_fileContract(Run_ymlFileNameFromIdentifier(run.Identifier), run.CWLInputStaticHash, ymlHash, (operation_1) => ARCtrl_ArcRun__ArcRun_TryToYMLContract_Z2D283928(run, operation_1))]);
+  run.CWLStaticHash = cwlHash | 0;
+  run.CWLInputStaticHash = ymlHash | 0;
+  return contracts;
+}
+function ARCAux_workflowFileContracts(workflow) {
+  const cwlHash = workflow.GetCWLHashCode() | 0;
+  const contracts = toArray$1(ARCAux_fileContract(Workflow_cwlFileNameFromIdentifier(workflow.Identifier), workflow.CWLStaticHash, cwlHash, (operation) => ARCtrl_ArcWorkflow__ArcWorkflow_TryToCWLContract_Z2D283928(workflow, operation)));
+  workflow.CWLStaticHash = cwlHash | 0;
+  return contracts;
+}
 function ARCAux_getArcAssaysFromContracts(contracts) {
   return choose(ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F, contracts);
 }
@@ -1221,11 +1262,11 @@ function ARCAux_getCWLByPathFromContracts(contracts) {
     let matchResult = void 0, text = void 0;
     if (c.Operation === "READ") {
       if (c.DTOType != null) {
-        if (value(c.DTOType) === "CWL") {
+        if (c.DTOType === "CWL") {
           if (c.DTO != null) {
-            if (typeof value(c.DTO) === "string") {
+            if (typeof c.DTO === "string") {
               matchResult = 0;
-              text = value(c.DTO);
+              text = c.DTO;
             } else {
               matchResult = 1;
             }
@@ -1242,10 +1283,8 @@ function ARCAux_getCWLByPathFromContracts(contracts) {
       matchResult = 1;
     }
     switch (matchResult) {
-      case 0: {
-        const cwl = Decode_decodeCWLProcessingUnit(text);
-        return [normalizePathKey(c.Path), cwl];
-      }
+      case 0:
+        return [normalizePathKey(c.Path), CWLFileReading_decodeCWLFile(c.Path, text)];
       default:
         return void 0;
     }
@@ -1293,4 +1332,4 @@ const ARCAux_defaultContracts = ofSeq$1([[".gitignore", gitignoreContract], [".g
   Compare: (x, y) => comparePrimitives(x, y) | 0
 });
 
-export { ARC, ARCAux_defaultContracts, ARCAux_getArcAssaysFromContracts, ARCAux_getArcInvestigationFromContracts, ARCAux_getArcRunsFromContracts, ARCAux_getArcStudiesFromContracts, ARCAux_getArcWorkflowsFromContracts, ARCAux_getAssayDatamapFromContracts, ARCAux_getCWLByPathFromContracts, ARCAux_getLicenseFromContracts, ARCAux_getRunCWLFromContracts, ARCAux_getRunDatamapFromContracts, ARCAux_getRunYMLFromContracts, ARCAux_getStudyDatamapFromContracts, ARCAux_getWorkflowCWLFromContracts, ARCAux_getWorkflowDatamapFromContracts, ARCAux_tryGetCWLByPath, ARCAux_updateFSByARC, ARC_$ctor_Z443FB9BF, ARC_$reflection };
+export { ARC, ARCAux_defaultContracts, ARCAux_fileContract, ARCAux_getArcAssaysFromContracts, ARCAux_getArcInvestigationFromContracts, ARCAux_getArcRunsFromContracts, ARCAux_getArcStudiesFromContracts, ARCAux_getArcWorkflowsFromContracts, ARCAux_getAssayDatamapFromContracts, ARCAux_getCWLByPathFromContracts, ARCAux_getLicenseFromContracts, ARCAux_getRunCWLFromContracts, ARCAux_getRunDatamapFromContracts, ARCAux_getRunYMLFromContracts, ARCAux_getStudyDatamapFromContracts, ARCAux_getWorkflowCWLFromContracts, ARCAux_getWorkflowDatamapFromContracts, ARCAux_runFileContracts, ARCAux_tryGetCWLByPath, ARCAux_updateFSByARC, ARCAux_workflowFileContracts, ARC_$ctor_Z443FB9BF, ARC_$reflection };

package/dist/ts/ts/CWL/CWLKnownFieldNames.d.ts

@@ -6,7 +6,6 @@ export declare const inputEnumSchema: FSharpSet<string>;
 export declare const inputRecordField: FSharpSet<string>;
 export declare const inputRecordSchema: FSharpSet<string>;
 export declare const inputArraySchema: FSharpSet<string>;
-export declare const schemaDefRequirementType: FSharpSet<string>;
 export declare const softwarePackage: FSharpSet<string>;
 export declare const inputBinding: FSharpSet<string>;
 export declare const cwlInput: FSharpSet<string>;
@@ -28,5 +27,4 @@ export declare const workflowDescription: FSharpSet<string>;
 export declare const stepInput: FSharpSet<string>;
 export declare const stepOutputParameter: FSharpSet<string>;
 export declare const workflowStep: FSharpSet<string>;
-export declare const parameterReference: FSharpSet<string>;
 //# sourceMappingURL=CWLKnownFieldNames.d.ts.map

package/dist/ts/ts/CWL/CWLKnownFieldNames.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CWLKnownFieldNames.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/CWLKnownFieldNames.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,EAAS,MAAM,oCAAoC,CAAC;AAItE,eAAO,MAAM,YAAY,EAAE,SAAS,CAAC,MAAM,CAEzC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAE9C,CAAC;AAEH,eAAO,MAAM,cAAc,EAAE,SAAS,CAAC,MAAM,CAE3C,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,MAAM,CAE5C,CAAC;AAEH,eAAO,MAAM,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAE7C,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAE9C,CAAC;AAEH,eAAO,MAAM,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAE7C,CAAC;AAEH,eAAO,MAAM,wBAAwB,EAAE,SAAS,CAAC,MAAM,CAErD,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,MAAM,CAE5C,CAAC;AAEH,eAAO,MAAM,YAAY,EAAE,SAAS,CAAC,MAAM,CAEzC,CAAC;AAEH,eAAO,MAAM,QAAQ,EAAE,SAAS,CAAC,MAAM,CAErC,CAAC;AAEH,eAAO,MAAM,aAAa,EAAE,SAAS,CAAC,MAAM,CAE1C,CAAC;AAEH,eAAO,MAAM,SAAS,EAAE,SAAS,CAAC,MAAM,CAEtC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAE9C,CAAC;AAEH,eAAO,MAAM,cAAc,EAAE,SAAS,CAAC,MAAM,CAE3C,CAAC;AAEH,eAAO,MAAM,2BAA2B,EAAE,SAAS,CAAC,MAAM,CAExD,CAAC;AAEH,eAAO,MAAM,yBAAyB,EAAE,SAAS,CAAC,MAAM,CAEtD,CAAC;AAEH,eAAO,MAAM,6BAA6B,EAAE,SAAS,CAAC,MAAM,CAE1D,CAAC;AAEH,eAAO,MAAM,6BAA6B,EAAE,SAAS,CAAC,MAAM,CAE1D,CAAC;AAEH,eAAO,MAAM,2BAA2B,EAAE,SAAS,CAAC,MAAM,CAExD,CAAC;AAEH,eAAO,MAAM,gCAAgC,EAAE,SAAS,CAAC,MAAM,CAE7D,CAAC;AAEH,eAAO,MAAM,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAE7C,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,MAAM,CAE5C,CAAC;AAEH,eAAO,MAAM,yBAAyB,EAAE,SAAS,CAAC,MAAM,CAEtD,CAAC;AAEH,eAAO,MAAM,oBAAoB,EAAE,SAAS,CAAC,MAAM,CAEjD,CAAC;AAEH,eAAO,MAAM,mBAAmB,EAAE,SAAS,CAAC,MAAM,CAEhD,CAAC;AAEH,eAAO,MAAM,SAAS,EAAE,SAAS,CAAC,MAAM,CAEtC,CAAC;AAEH,eAAO,MAAM,mBAAmB,EAAE,SAAS,CAAC,MAAM,CAEhD,CAAC;AAEH,eAAO,MAAM,YAAY,EAAE,SAAS,CAAC,MAAM,CAEzC,CAAC;AAEH,eAAO,MAAM,kBAAkB,EAAE,SAAS,CAAC,MAAM,CAE/C,CAAC"}
+{"version":3,"file":"CWLKnownFieldNames.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/CWLKnownFieldNames.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,EAAS,MAAM,oCAAoC,CAAC;AAItE,eAAO,MAAM,YAAY,EAAE,SAAS,CAAC,MAAM,CAEzC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAE9C,CAAC;AAEH,eAAO,MAAM,cAAc,EAAE,SAAS,CAAC,MAAM,CAE3C,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,MAAM,CAE5C,CAAC;AAEH,eAAO,MAAM,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAE7C,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAE9C,CAAC;AAEH,eAAO,MAAM,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAE7C,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,MAAM,CAE5C,CAAC;AAEH,eAAO,MAAM,YAAY,EAAE,SAAS,CAAC,MAAM,CAEzC,CAAC;AAEH,eAAO,MAAM,QAAQ,EAAE,SAAS,CAAC,MAAM,CAErC,CAAC;AAEH,eAAO,MAAM,aAAa,EAAE,SAAS,CAAC,MAAM,CAE1C,CAAC;AAEH,eAAO,MAAM,SAAS,EAAE,SAAS,CAAC,MAAM,CAEtC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAE9C,CAAC;AAEH,eAAO,MAAM,cAAc,EAAE,SAAS,CAAC,MAAM,CAE3C,CAAC;AAEH,eAAO,MAAM,2BAA2B,EAAE,SAAS,CAAC,MAAM,CAExD,CAAC;AAEH,eAAO,MAAM,yBAAyB,EAAE,SAAS,CAAC,MAAM,CAEtD,CAAC;AAEH,eAAO,MAAM,6BAA6B,EAAE,SAAS,CAAC,MAAM,CAE1D,CAAC;AAEH,eAAO,MAAM,6BAA6B,EAAE,SAAS,CAAC,MAAM,CAE1D,CAAC;AAEH,eAAO,MAAM,2BAA2B,EAAE,SAAS,CAAC,MAAM,CAExD,CAAC;AAEH,eAAO,MAAM,gCAAgC,EAAE,SAAS,CAAC,MAAM,CAE7D,CAAC;AAEH,eAAO,MAAM,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAE7C,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,MAAM,CAE5C,CAAC;AAEH,eAAO,MAAM,yBAAyB,EAAE,SAAS,CAAC,MAAM,CAEtD,CAAC;AAEH,eAAO,MAAM,oBAAoB,EAAE,SAAS,CAAC,MAAM,CAEjD,CAAC;AAEH,eAAO,MAAM,mBAAmB,EAAE,SAAS,CAAC,MAAM,CAEhD,CAAC;AAEH,eAAO,MAAM,SAAS,EAAE,SAAS,CAAC,MAAM,CAEtC,CAAC;AAEH,eAAO,MAAM,mBAAmB,EAAE,SAAS,CAAC,MAAM,CAEhD,CAAC;AAEH,eAAO,MAAM,YAAY,EAAE,SAAS,CAAC,MAAM,CAEzC,CAAC"}

package/dist/ts/ts/CWL/CWLKnownFieldNames.js

@@ -22,9 +22,6 @@ const inputRecordSchema = ofSeq(["type", "fields", "label", "doc", "name"], {
 const inputArraySchema = ofSeq(["type", "items", "label", "doc", "name"], {
   Compare: (x, y) => comparePrimitives(x, y) | 0
 });
-const schemaDefRequirementType = ofSeq(["name", "type"], {
-  Compare: (x, y) => comparePrimitives(x, y) | 0
-});
 const softwarePackage = ofSeq(["package", "version", "specs"], {
   Compare: (x, y) => comparePrimitives(x, y) | 0
 });
@@ -88,8 +85,5 @@ const stepOutputParameter = ofSeq(["id"], {
 const workflowStep = ofSeq(["id", "run", "in", "out", "requirements", "hints", "label", "doc", "scatter", "scatterMethod", "when"], {
   Compare: (x, y) => comparePrimitives(x, y) | 0
 });
-const parameterReference = ofSeq(["class", "path", "location", "type", "value"], {
-  Compare: (x, y) => comparePrimitives(x, y) | 0
-});
 
-export { cwlInput, cwlOutput, directoryInstance, direntInstance, dockerRequirement, environmentDef, expressionToolDescription, fileInstance, hintUnknownValue, inlineJavascriptRequirementValue, inplaceUpdateRequirementValue, inputArraySchema, inputBinding, inputEnumSchema, inputRecordField, inputRecordSchema, loadListingRequirementValue, networkAccessRequirementValue, operationDescription, outputBinding, parameterReference, resourceRequirementInstance, schemaDefRequirementType, softwarePackage, stepInput, stepOutputParameter, toolDescription, workReuseRequirementValue, workflowDescription, workflowStep };
+export { cwlInput, cwlOutput, directoryInstance, direntInstance, dockerRequirement, environmentDef, expressionToolDescription, fileInstance, hintUnknownValue, inlineJavascriptRequirementValue, inplaceUpdateRequirementValue, inputArraySchema, inputBinding, inputEnumSchema, inputRecordField, inputRecordSchema, loadListingRequirementValue, networkAccessRequirementValue, operationDescription, outputBinding, resourceRequirementInstance, softwarePackage, stepInput, stepOutputParameter, toolDescription, workReuseRequirementValue, workflowDescription, workflowStep };

package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts

@@ -1,56 +1,71 @@
-import { Union } from '@fable-org/fable-library-ts/Types.ts';
 import { CWLToolDescription } from './ToolDescription.ts';
 import { CWLWorkflowDescription } from './WorkflowDescription.ts';
 import { CWLExpressionToolDescription } from './ExpressionToolDescription.ts';
 import { CWLOperationDescription } from './OperationDescription.ts';
-import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
+import { SchemaSaladString_$union, RawYaml } from './CWLTypes.ts';
 import { CWLInput } from './Inputs.ts';
 import { CWLOutput } from './Outputs.ts';
 import { HintEntry_$union, Requirement_$union } from './Requirements.ts';
+import { Union } from '@fable-org/fable-library-ts/Types.ts';
+import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
 import { WorkflowStepRun_$union } from './WorkflowSteps.ts';
 import { Option } from '@fable-org/fable-library-ts/Option.ts';
-export type CWLProcessingUnit_$union = CWLProcessingUnit<0> | CWLProcessingUnit<1> | CWLProcessingUnit<2> | CWLProcessingUnit<3>;
+export declare function LocalReference_withoutHash(reference: string): string;
+export type CWLProcessingUnit_$union = CWLProcessingUnit<0> | CWLProcessingUnit<1> | CWLProcessingUnit<2> | CWLProcessingUnit<3> | CWLProcessingUnit<4>;
 export type CWLProcessingUnit_$cases = {
     0: ["CommandLineTool", [CWLToolDescription]];
     1: ["Workflow", [CWLWorkflowDescription]];
     2: ["ExpressionTool", [CWLExpressionToolDescription]];
     3: ["Operation", [CWLOperationDescription]];
+    4: ["RawProcess", [RawYaml]];
 };
 export declare function CWLProcessingUnit_CommandLineTool(Item: CWLToolDescription): CWLProcessingUnit<0>;
 export declare function CWLProcessingUnit_Workflow(Item: CWLWorkflowDescription): CWLProcessingUnit<1>;
 export declare function CWLProcessingUnit_ExpressionTool(Item: CWLExpressionToolDescription): CWLProcessingUnit<2>;
 export declare function CWLProcessingUnit_Operation(Item: CWLOperationDescription): CWLProcessingUnit<3>;
+export declare function CWLProcessingUnit_RawProcess(Item: RawYaml): CWLProcessingUnit<4>;
 export declare class CWLProcessingUnit<Tag extends keyof CWLProcessingUnit_$cases> extends Union<Tag, CWLProcessingUnit_$cases[Tag][0]> {
     constructor(tag: Tag, fields: CWLProcessingUnit_$cases[Tag][1]);
     readonly tag: Tag;
     readonly fields: CWLProcessingUnit_$cases[Tag][1];
     cases(): string[];
+    static commandLineTool(value: CWLToolDescription): CWLProcessingUnit_$union;
+    static workflow(value: CWLWorkflowDescription): CWLProcessingUnit_$union;
+    static expressionTool(value: CWLExpressionToolDescription): CWLProcessingUnit_$union;
+    static operation(value: CWLOperationDescription): CWLProcessingUnit_$union;
+    static rawProcess(value: RawYaml): CWLProcessingUnit_$union;
+    /**
+     * Returns a new list of the inputs of the process that are objects, for every kind of process. A change of the list
+     * changes nothing in the process.
+     */
+    static getInputValues(processingUnit: CWLProcessingUnit_$union): CWLInput[];
+    /**
+     * Returns a new list of the outputs of the process that are objects, for every kind of process. A change of the list
+     * changes nothing in the process.
+     */
+    static getOutputValues(processingUnit: CWLProcessingUnit_$union): CWLOutput[];
+    /**
+     * Returns requirements for all CWL processing unit variants.
+     */
+    static getRequirements(processingUnit: CWLProcessingUnit_$union): Requirement_$union[];
+    /**
+     * Returns hints for all CWL processing unit variants.
+     */
+    static getHints(processingUnit: CWLProcessingUnit_$union): HintEntry_$union[];
+    /**
+     * Returns intent for all CWL processing unit variants.
+     */
+    static getIntent(processingUnit: CWLProcessingUnit_$union): SchemaSaladString_$union[];
+    /**
+     * Returns known requirement hints only, dropping unknown extension hints.
+     */
+    static getKnownHints(processingUnit: CWLProcessingUnit_$union): Requirement_$union[];
+    /**
+     * True when both values wrap the same description object. Two union values around one object are the same process.
+     */
+    static isSameObject(left: CWLProcessingUnit_$union, right: CWLProcessingUnit_$union): boolean;
 }
 export declare function CWLProcessingUnit_$reflection(): TypeInfo;
-/**
- * Returns normalized inputs for all CWL processing unit variants.
- */
-export declare function CWLProcessingUnit_getInputs_30922B92(processingUnit: CWLProcessingUnit_$union): CWLInput[];
-/**
- * Returns outputs for all CWL processing unit variants.
- */
-export declare function CWLProcessingUnit_getOutputs_30922B92(processingUnit: CWLProcessingUnit_$union): CWLOutput[];
-/**
- * Returns requirements for all CWL processing unit variants.
- */
-export declare function CWLProcessingUnit_getRequirements_30922B92(processingUnit: CWLProcessingUnit_$union): Requirement_$union[];
-/**
- * Returns hints for all CWL processing unit variants.
- */
-export declare function CWLProcessingUnit_getHints_30922B92(processingUnit: CWLProcessingUnit_$union): HintEntry_$union[];
-/**
- * Returns intent for all CWL processing unit variants.
- */
-export declare function CWLProcessingUnit_getIntent_30922B92(processingUnit: CWLProcessingUnit_$union): string[];
-/**
- * Returns known requirement hints only, dropping unknown extension hints.
- */
-export declare function CWLProcessingUnit_getKnownHints_30922B92(processingUnit: CWLProcessingUnit_$union): Requirement_$union[];
 export declare function WorkflowStepRunOps_fromTool(tool: CWLToolDescription): WorkflowStepRun_$union;
 export declare function WorkflowStepRunOps_fromWorkflow(workflow: CWLWorkflowDescription): WorkflowStepRun_$union;
 export declare function WorkflowStepRunOps_fromExpressionTool(expressionTool: CWLExpressionToolDescription): WorkflowStepRun_$union;
@@ -59,4 +74,8 @@ export declare function WorkflowStepRunOps_tryGetTool(run: WorkflowStepRun_$unio
 export declare function WorkflowStepRunOps_tryGetWorkflow(run: WorkflowStepRun_$union): Option<CWLWorkflowDescription>;
 export declare function WorkflowStepRunOps_tryGetExpressionTool(run: WorkflowStepRun_$union): Option<CWLExpressionToolDescription>;
 export declare function WorkflowStepRunOps_tryGetOperation(run: WorkflowStepRun_$union): Option<CWLOperationDescription>;
+/**
+ * The process that a run holds, and none for a run that names a file or keeps a mapping as it was written.
+ */
+export declare function WorkflowStepRunOps_tryGetProcessingUnit(run: WorkflowStepRun_$union): Option<CWLProcessingUnit_$union>;
 //# sourceMappingURL=CWLProcessingUnit.d.ts.map

package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CWLProcessingUnit.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/CWLProcessingUnit.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAkC,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1F,OAAO,EAAsC,sBAAsB,EAAE,MAAM,0BAA0B,CAAC;AACtG,OAAO,EAA4C,4BAA4B,EAAE,MAAM,gCAAgC,CAAC;AACxH,OAAO,EAAuC,uBAAuB,EAAE,MAAM,2BAA2B,CAAC;AACzG,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AACvC,OAAO,EAAE,SAAS,EAAE,MAAM,cAAc,CAAC;AACzC,OAAO,EAAkC,gBAAgB,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AAEzG,OAAO,EAAgG,sBAAsB,EAAsC,MAAM,oBAAoB,CAAC;AAC9L,OAAO,EAAE,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE/D,MAAM,MAAM,wBAAwB,GAC9B,iBAAiB,CAAC,CAAC,CAAC,GACpB,iBAAiB,CAAC,CAAC,CAAC,GACpB,iBAAiB,CAAC,CAAC,CAAC,GACpB,iBAAiB,CAAC,CAAC,CAAC,CAAA;AAE1B,MAAM,MAAM,wBAAwB,GAAG;IACnC,CAAC,EAAE,CAAC,iBAAiB,EAAE,CAAC,kBAAkB,CAAC,CAAC,CAAC;IAC7C,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC,sBAAsB,CAAC,CAAC,CAAC;IAC1C,CAAC,EAAE,CAAC,gBAAgB,EAAE,CAAC,4BAA4B,CAAC,CAAC,CAAC;IACtD,CAAC,EAAE,CAAC,WAAW,EAAE,CAAC,uBAAuB,CAAC,CAAC,CAAA;CAC9C,CAAA;AAED,wBAAgB,iCAAiC,CAAC,IAAI,EAAE,kBAAkB,wBAEzE;AAED,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,sBAAsB,wBAEtE;AAED,wBAAgB,gCAAgC,CAAC,IAAI,EAAE,4BAA4B,wBAElF;AAED,wBAAgB,2BAA2B,CAAC,IAAI,EAAE,uBAAuB,wBAExE;AAED,qBAAa,iBAAiB,CAAC,GAAG,SAAS,MAAM,wBAAwB,CAAE,SAAQ,KAAK,CAAC,GAAG,EAAE,wBAAwB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;gBAC/G,GAAG,EAAE,GAAG,EAAE,MAAM,EAAE,wBAAwB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAK9D,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC;IAClB,QAAQ,CAAC,MAAM,EAAE,wBAAwB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAClD,KAAK;CAGR;AAED,wBAAgB,6BAA6B,IAAI,QAAQ,CAExD;AAED;;GAEG;AACH,wBAAgB,oCAAoC,CAAC,cAAc,EAAE,wBAAwB,GAAG,QAAQ,EAAE,CAmBzG;AAED;;GAEG;AACH,wBAAgB,qCAAqC,CAAC,cAAc,EAAE,wBAAwB,GAAG,SAAS,EAAE,CAmB3G;AAED;;GAEG;AACH,wBAAgB,0CAA0C,CAAC,cAAc,EAAE,wBAAwB,GAAG,kBAAkB,EAAE,CAmBzH;AAED;;GAEG;AACH,wBAAgB,mCAAmC,CAAC,cAAc,EAAE,wBAAwB,GAAG,gBAAgB,EAAE,CAmBhH;AAED;;GAEG;AACH,wBAAgB,oCAAoC,CAAC,cAAc,EAAE,wBAAwB,GAAG,MAAM,EAAE,CAmBvG;AAED;;GAEG;AACH,wBAAgB,wCAAwC,CAAC,cAAc,EAAE,wBAAwB,GAAG,kBAAkB,EAAE,CAKvH;AAED,wBAAgB,2BAA2B,CAAC,IAAI,EAAE,kBAAkB,GAAG,sBAAsB,CAE5F;AAED,wBAAgB,+BAA+B,CAAC,QAAQ,EAAE,sBAAsB,GAAG,sBAAsB,CAExG;AAED,wBAAgB,qCAAqC,CAAC,cAAc,EAAE,4BAA4B,GAAG,sBAAsB,CAE1H;AAED,wBAAgB,gCAAgC,CAAC,SAAS,EAAE,uBAAuB,GAAG,sBAAsB,CAE3G;AAED,wBAAgB,6BAA6B,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAAC,kBAAkB,CAAC,CAoBrG;AAED,wBAAgB,iCAAiC,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAAC,sBAAsB,CAAC,CAoB7G;AAED,wBAAgB,uCAAuC,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAAC,4BAA4B,CAAC,CAoBzH;AAED,wBAAgB,kCAAkC,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAAC,uBAAuB,CAAC,CAoB/G"}
+{"version":3,"file":"CWLProcessingUnit.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/CWLProcessingUnit.ts"],"names":[],"mappings":"AAEA,OAAO,EAAkC,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1F,OAAO,EAAsC,sBAAsB,EAAE,MAAM,0BAA0B,CAAC;AACtG,OAAO,EAA4C,4BAA4B,EAAE,MAAM,gCAAgC,CAAC;AACxH,OAAO,EAAuC,uBAAuB,EAAE,MAAM,2BAA2B,CAAC;AACzG,OAAO,EAAuB,wBAAwB,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AAEvF,OAAO,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AACvC,OAAO,EAAE,SAAS,EAAE,MAAM,cAAc,CAAC;AACzC,OAAO,EAAa,gBAAgB,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AAEpF,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAAgG,sBAAsB,EAAsC,MAAM,oBAAoB,CAAC;AAC9L,OAAO,EAAE,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE/D,wBAAgB,0BAA0B,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAOpE;AAED,MAAM,MAAM,wBAAwB,GAC9B,iBAAiB,CAAC,CAAC,CAAC,GACpB,iBAAiB,CAAC,CAAC,CAAC,GACpB,iBAAiB,CAAC,CAAC,CAAC,GACpB,iBAAiB,CAAC,CAAC,CAAC,GACpB,iBAAiB,CAAC,CAAC,CAAC,CAAA;AAE1B,MAAM,MAAM,wBAAwB,GAAG;IACnC,CAAC,EAAE,CAAC,iBAAiB,EAAE,CAAC,kBAAkB,CAAC,CAAC,CAAC;IAC7C,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC,sBAAsB,CAAC,CAAC,CAAC;IAC1C,CAAC,EAAE,CAAC,gBAAgB,EAAE,CAAC,4BAA4B,CAAC,CAAC,CAAC;IACtD,CAAC,EAAE,CAAC,WAAW,EAAE,CAAC,uBAAuB,CAAC,CAAC,CAAC;IAC5C,CAAC,EAAE,CAAC,YAAY,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;CAC/B,CAAA;AAED,wBAAgB,iCAAiC,CAAC,IAAI,EAAE,kBAAkB,wBAEzE;AAED,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,sBAAsB,wBAEtE;AAED,wBAAgB,gCAAgC,CAAC,IAAI,EAAE,4BAA4B,wBAElF;AAED,wBAAgB,2BAA2B,CAAC,IAAI,EAAE,uBAAuB,wBAExE;AAED,wBAAgB,4BAA4B,CAAC,IAAI,EAAE,OAAO,wBAEzD;AAED,qBAAa,iBAAiB,CAAC,GAAG,SAAS,MAAM,wBAAwB,CAAE,SAAQ,KAAK,CAAC,GAAG,EAAE,wBAAwB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;gBAC/G,GAAG,EAAE,GAAG,EAAE,MAAM,EAAE,wBAAwB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAK9D,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC;IAClB,QAAQ,CAAC,MAAM,EAAE,wBAAwB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAClD,KAAK;IAGL,MAAM,CAAC,eAAe,CAAC,KAAK,EAAE,kBAAkB,GAAG,wBAAwB;IAG3E,MAAM,CAAC,QAAQ,CAAC,KAAK,EAAE,sBAAsB,GAAG,wBAAwB;IAGxE,MAAM,CAAC,cAAc,CAAC,KAAK,EAAE,4BAA4B,GAAG,wBAAwB;IAGpF,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,uBAAuB,GAAG,wBAAwB;IAG1E,MAAM,CAAC,UAAU,CAAC,KAAK,EAAE,OAAO,GAAG,wBAAwB;IAG3D;;;OAGG;IACH,MAAM,CAAC,cAAc,CAAC,cAAc,EAAE,wBAAwB,GAAG,QAAQ,EAAE;IAsB3E;;;OAGG;IACH,MAAM,CAAC,eAAe,CAAC,cAAc,EAAE,wBAAwB,GAAG,SAAS,EAAE;IAsB7E;;OAEG;IACH,MAAM,CAAC,eAAe,CAAC,cAAc,EAAE,wBAAwB,GAAG,kBAAkB,EAAE;IAsBtF;;OAEG;IACH,MAAM,CAAC,QAAQ,CAAC,cAAc,EAAE,wBAAwB,GAAG,gBAAgB,EAAE;IAsB7E;;OAEG;IACH,MAAM,CAAC,SAAS,CAAC,cAAc,EAAE,wBAAwB,GAAG,wBAAwB,EAAE;IAsBtF;;OAEG;IACH,MAAM,CAAC,aAAa,CAAC,cAAc,EAAE,wBAAwB,GAAG,kBAAkB,EAAE;IAMpF;;OAEG;IACH,MAAM,CAAC,YAAY,CAAC,IAAI,EAAE,wBAAwB,EAAE,KAAK,EAAE,wBAAwB,GAAG,OAAO;CAwEhG;AAED,wBAAgB,6BAA6B,IAAI,QAAQ,CAExD;AAED,wBAAgB,2BAA2B,CAAC,IAAI,EAAE,kBAAkB,GAAG,sBAAsB,CAE5F;AAED,wBAAgB,+BAA+B,CAAC,QAAQ,EAAE,sBAAsB,GAAG,sBAAsB,CAExG;AAED,wBAAgB,qCAAqC,CAAC,cAAc,EAAE,4BAA4B,GAAG,sBAAsB,CAE1H;AAED,wBAAgB,gCAAgC,CAAC,SAAS,EAAE,uBAAuB,GAAG,sBAAsB,CAE3G;AAED,wBAAgB,6BAA6B,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAAC,kBAAkB,CAAC,CAoBrG;AAED,wBAAgB,iCAAiC,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAAC,sBAAsB,CAAC,CAoB7G;AAED,wBAAgB,uCAAuC,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAAC,4BAA4B,CAAC,CAoBzH;AAED,wBAAgB,kCAAkC,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAAC,uBAAuB,CAAC,CAoB/G;AAED;;GAEG;AACH,wBAAgB,uCAAuC,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAAC,wBAAwB,CAAC,CA4CrH"}