@nfdi4plants/arctrl 3.0.3 → 3.1.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (107) hide show
  1. package/dist/ts/node_modules/@fable-org/fable-library-js/System.Collections.Generic.js +320 -0
  2. package/dist/ts/ts/ARC.d.ts +3 -3
  3. package/dist/ts/ts/ARC.d.ts.map +1 -1
  4. package/dist/ts/ts/ARC.js +72 -93
  5. package/dist/ts/ts/CWL/CWLTypes.d.ts +162 -45
  6. package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -1
  7. package/dist/ts/ts/CWL/CWLTypes.js +495 -104
  8. package/dist/ts/ts/CWL/Decode.d.ts +292 -46
  9. package/dist/ts/ts/CWL/Decode.d.ts.map +1 -1
  10. package/dist/ts/ts/CWL/Decode.js +951 -563
  11. package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts +37 -0
  12. package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts.map +1 -0
  13. package/dist/ts/ts/CWL/DynamicObjHelpers.js +57 -0
  14. package/dist/ts/ts/CWL/Encode.d.ts +117 -2
  15. package/dist/ts/ts/CWL/Encode.d.ts.map +1 -1
  16. package/dist/ts/ts/CWL/Encode.js +447 -193
  17. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts +8 -3
  18. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map +1 -1
  19. package/dist/ts/ts/CWL/ExpressionToolDescription.js +20 -4
  20. package/dist/ts/ts/CWL/Inputs.d.ts +65 -14
  21. package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -1
  22. package/dist/ts/ts/CWL/Inputs.js +194 -51
  23. package/dist/ts/ts/CWL/OperationDescription.d.ts +8 -3
  24. package/dist/ts/ts/CWL/OperationDescription.d.ts.map +1 -1
  25. package/dist/ts/ts/CWL/OperationDescription.js +20 -4
  26. package/dist/ts/ts/CWL/Outputs.d.ts +51 -12
  27. package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -1
  28. package/dist/ts/ts/CWL/Outputs.js +152 -76
  29. package/dist/ts/ts/CWL/ParameterReference.d.ts +4 -1
  30. package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -1
  31. package/dist/ts/ts/CWL/ParameterReference.js +17 -6
  32. package/dist/ts/ts/CWL/Requirements.d.ts +140 -50
  33. package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -1
  34. package/dist/ts/ts/CWL/Requirements.js +458 -127
  35. package/dist/ts/ts/CWL/ToolDescription.d.ts +31 -3
  36. package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -1
  37. package/dist/ts/ts/CWL/ToolDescription.js +83 -4
  38. package/dist/ts/ts/CWL/WorkflowDescription.d.ts +8 -3
  39. package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -1
  40. package/dist/ts/ts/CWL/WorkflowDescription.js +20 -4
  41. package/dist/ts/ts/CWL/WorkflowSteps.d.ts +50 -19
  42. package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -1
  43. package/dist/ts/ts/CWL/WorkflowSteps.js +152 -23
  44. package/dist/ts/ts/Contract/Git.d.ts.map +1 -1
  45. package/dist/ts/ts/Contract/Git.js +1 -1
  46. package/dist/ts/ts/ContractIO/ContractIO.d.ts +3 -3
  47. package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
  48. package/dist/ts/ts/ContractIO/ContractIO.js +30 -23
  49. package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -1
  50. package/dist/ts/ts/Conversion/Assay.js +4 -3
  51. package/dist/ts/ts/Conversion/Investigation.js +2 -2
  52. package/dist/ts/ts/Conversion/Person.d.ts +1 -1
  53. package/dist/ts/ts/Conversion/Person.d.ts.map +1 -1
  54. package/dist/ts/ts/Conversion/Person.js +27 -11
  55. package/dist/ts/ts/Conversion/Run.d.ts.map +1 -1
  56. package/dist/ts/ts/Conversion/Run.js +3 -2
  57. package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -1
  58. package/dist/ts/ts/Conversion/ScholarlyArticle.js +2 -1
  59. package/dist/ts/ts/Conversion/Study.d.ts.map +1 -1
  60. package/dist/ts/ts/Conversion/Study.js +5 -4
  61. package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -1
  62. package/dist/ts/ts/Conversion/Workflow.js +13 -12
  63. package/dist/ts/ts/Conversion.d.ts +14 -10
  64. package/dist/ts/ts/Conversion.d.ts.map +1 -1
  65. package/dist/ts/ts/Conversion.js +18 -11
  66. package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
  67. package/dist/ts/ts/Core/ArcTypes.js +18 -0
  68. package/dist/ts/ts/Core/Datamap.d.ts.map +1 -1
  69. package/dist/ts/ts/Core/Datamap.js +4 -2
  70. package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map +1 -1
  71. package/dist/ts/ts/Core/OntologyAnnotation.js +76 -2
  72. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +3 -0
  73. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -1
  74. package/dist/ts/ts/Core/Table/ArcTableAux.js +23 -10
  75. package/dist/ts/ts/Core/Table/ArcTables.d.ts +1 -0
  76. package/dist/ts/ts/Core/Table/ArcTables.d.ts.map +1 -1
  77. package/dist/ts/ts/Core/Table/ArcTables.js +7 -3
  78. package/dist/ts/ts/Json.d.ts +2 -2
  79. package/dist/ts/ts/Json.d.ts.map +1 -1
  80. package/dist/ts/ts/Json.js +3 -3
  81. package/dist/ts/ts/WorkflowGraph/ReferenceParsing.d.ts.map +1 -1
  82. package/dist/ts/ts/WorkflowGraph/ReferenceParsing.js +2 -1
  83. package/dist/ts/ts/Yaml/ValidationPackage.d.ts +1 -1
  84. package/dist/ts/ts/Yaml/ValidationPackage.d.ts.map +1 -1
  85. package/dist/ts/ts/Yaml/ValidationPackage.js +5 -5
  86. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts +1 -1
  87. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts.map +1 -1
  88. package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -5
  89. package/dist/ts/ts/Yaml.js +1 -1
  90. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Decode.fs.js +96 -24
  91. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Persil.fs.js +11 -159
  92. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Preprocessing.fs.js +319 -0
  93. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Reader.fs.js +1867 -0
  94. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Regex.fs.js +1 -1
  95. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/RegexActivePatterns.fs.js +2 -2
  96. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Syntax.fs.js +819 -0
  97. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Writer.fs.js +686 -0
  98. package/package.json +1 -1
  99. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/FlowToBlock.fs.js +0 -956
  100. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Preprocessing.fs.js +0 -139
  101. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Reader.fs.js +0 -1314
  102. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Writer.fs.js +0 -391
  103. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Encode.fs.js +0 -0
  104. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Escapes.fs.js +0 -0
  105. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Interop/JsInterop.fs.js +0 -0
  106. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/StringBuffer.fs.js +0 -0
  107. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/YAMLiciousTypes.fs.js +0 -0
@@ -1,139 +0,0 @@
1
- import { length, takeWhile } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
2
- import { trimStart, substring } from '../../../node_modules/@fable-org/fable-library-js/String.js';
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- import { isWhiteSpace } from '../../../node_modules/@fable-org/fable-library-js/Char.js';
4
- import { Config_init_71136F3F, Config__get_WhitespaceString, Config, PreprocessorElement_Line, PreprocessorElement_Intendation, Preprocessor, PreprocessorElement_Level } from './YAMLiciousTypes.fs.js';
5
- import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
6
- import { StringBuffer_$ctor, StringBuffer__AppendLine_Z721C83C5 } from './StringBuffer.fs.js';
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- import { getEnumerator, disposeSafe } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
8
- import { toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
9
- import { pipeline } from './Persil.fs.js';
10
- import { isEmpty, tail, head, cons, takeWhile as takeWhile$1, skipWhile, reverse, empty, ofArray, ofSeq } from '../../../node_modules/@fable-org/fable-library-js/List.js';
11
-
12
- function ReadHelpers_indentLevel(line) {
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- return length(takeWhile((c) => c === " ", line.split("")));
14
- }
15
- function isDocumentMarker(marker, line) {
16
- const trimmed = trimStart(line);
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- if (!trimmed.startsWith(marker)) {
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- return false;
19
- } else if (trimmed.length === marker.length) {
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- return true;
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- } else {
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- return isWhiteSpace(trimmed[marker.length]);
23
- }
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- }
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- function isDocumentStart(line) {
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- return isDocumentMarker("---", line);
27
- }
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- function isDocumentEnd(line) {
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- return isDocumentMarker("...", line);
30
- }
31
- function write(rootElement, fconfig) {
32
- let config_1;
33
- const config = Config_init_71136F3F();
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- config_1 = fconfig != null ? value(fconfig)(config) : config;
35
- const sb = StringBuffer_$ctor();
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- const loop = (current, sb_1, config_2) => {
37
- switch (current.tag) {
38
- case /* Intendation */
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- 1: {
40
- const nextConfig = new Config(config_2.Whitespace, config_2.Level + 1);
41
- const enumerator = getEnumerator(current.fields[0]);
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- try {
43
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
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- loop(enumerator["System.Collections.Generic.IEnumerator`1.get_Current"](), sb_1, nextConfig);
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- }
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- } finally {
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- disposeSafe(enumerator);
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- }
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- break;
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- }
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- case /* Level */
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- 0: {
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- const enumerator_1 = getEnumerator(current.fields[0]);
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- try {
55
- while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
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- loop(enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"](), sb_1, config_2);
57
- }
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- } finally {
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- disposeSafe(enumerator_1);
60
- }
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- break;
62
- }
63
- case /* Nil */
64
- 3: {
65
- break;
66
- }
67
- default: {
68
- const line = current.fields[0];
69
- StringBuffer__AppendLine_Z721C83C5(sb_1, Config__get_WhitespaceString(config_2) + line);
70
- }
71
- }
72
- };
73
- loop(rootElement, sb, config_1);
74
- return toString(sb);
75
- }
76
- function read(yamlStr) {
77
- const content = pipeline(yamlStr);
78
- const stripIndent = (indent, line) => {
79
- if (indent <= 0) {
80
- return line;
81
- } else if (line.length >= indent) {
82
- return substring(line, indent);
83
- } else {
84
- return trimStart(line);
85
- }
86
- };
87
- const loop = (lines_mut, currentIntendation_mut, acc_mut) => {
88
- loop:
89
- while (true) {
90
- const lines = lines_mut, currentIntendation = currentIntendation_mut, acc = acc_mut;
91
- if (!isEmpty(lines)) {
92
- const rest = tail(lines);
93
- const line_1 = head(lines);
94
- const isEmptyLine = line_1.trim() === "";
95
- const nextIntendation = (isEmptyLine ? currentIntendation : ReadHelpers_indentLevel(line_1)) | 0;
96
- if (nextIntendation === currentIntendation) {
97
- lines_mut = rest;
98
- currentIntendation_mut = currentIntendation;
99
- acc_mut = cons(PreprocessorElement_Line(isEmptyLine ? "" : stripIndent(currentIntendation, line_1)), acc);
100
- continue loop;
101
- } else {
102
- const lineText_1 = isEmptyLine ? "" : stripIndent(nextIntendation, line_1);
103
- const nextLevelLines = takeWhile$1((l) => {
104
- if (l.trim() === "") {
105
- return true;
106
- } else {
107
- return ReadHelpers_indentLevel(l) > currentIntendation;
108
- }
109
- }, rest);
110
- lines_mut = skipWhile((l_1) => {
111
- if (l_1.trim() === "") {
112
- return true;
113
- } else {
114
- return ReadHelpers_indentLevel(l_1) > currentIntendation;
115
- }
116
- }, rest);
117
- currentIntendation_mut = currentIntendation;
118
- acc_mut = cons(PreprocessorElement_Intendation(cons(PreprocessorElement_Line(lineText_1), reverse(loop(nextLevelLines, nextIntendation, empty())))), acc);
119
- continue loop;
120
- }
121
- } else {
122
- return acc;
123
- }
124
- break;
125
- }
126
- };
127
- return new Preprocessor(PreprocessorElement_Level(reverse(loop(ofArray(content.Lines), 0, empty()))), content.StringMap, content.CommentMap, content.YAMLVersion, content.TagHandles);
128
- }
129
- function mkLine(line) {
130
- return PreprocessorElement_Line(line);
131
- }
132
- function mklLevel(children) {
133
- return PreprocessorElement_Level(ofSeq(children));
134
- }
135
- function mkIntendation(children) {
136
- return PreprocessorElement_Intendation(ofSeq(children));
137
- }
138
-
139
- export { ReadHelpers_indentLevel, isDocumentEnd, isDocumentStart, mkIntendation, mkLine, mklLevel, read, write };