@nfdi4plants/arctrl 3.0.3 → 3.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ts/node_modules/@fable-org/fable-library-js/System.Collections.Generic.js +320 -0
- package/dist/ts/ts/ARC.d.ts +3 -3
- package/dist/ts/ts/ARC.d.ts.map +1 -1
- package/dist/ts/ts/ARC.js +72 -93
- package/dist/ts/ts/CWL/CWLTypes.d.ts +162 -45
- package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -1
- package/dist/ts/ts/CWL/CWLTypes.js +495 -104
- package/dist/ts/ts/CWL/Decode.d.ts +292 -46
- package/dist/ts/ts/CWL/Decode.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Decode.js +951 -563
- package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts +37 -0
- package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts.map +1 -0
- package/dist/ts/ts/CWL/DynamicObjHelpers.js +57 -0
- package/dist/ts/ts/CWL/Encode.d.ts +117 -2
- package/dist/ts/ts/CWL/Encode.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Encode.js +447 -193
- package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts +8 -3
- package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ExpressionToolDescription.js +20 -4
- package/dist/ts/ts/CWL/Inputs.d.ts +65 -14
- package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Inputs.js +194 -51
- package/dist/ts/ts/CWL/OperationDescription.d.ts +8 -3
- package/dist/ts/ts/CWL/OperationDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/OperationDescription.js +20 -4
- package/dist/ts/ts/CWL/Outputs.d.ts +51 -12
- package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Outputs.js +152 -76
- package/dist/ts/ts/CWL/ParameterReference.d.ts +4 -1
- package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ParameterReference.js +17 -6
- package/dist/ts/ts/CWL/Requirements.d.ts +140 -50
- package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Requirements.js +458 -127
- package/dist/ts/ts/CWL/ToolDescription.d.ts +31 -3
- package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ToolDescription.js +83 -4
- package/dist/ts/ts/CWL/WorkflowDescription.d.ts +8 -3
- package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/WorkflowDescription.js +20 -4
- package/dist/ts/ts/CWL/WorkflowSteps.d.ts +50 -19
- package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -1
- package/dist/ts/ts/CWL/WorkflowSteps.js +152 -23
- package/dist/ts/ts/Contract/Git.d.ts.map +1 -1
- package/dist/ts/ts/Contract/Git.js +1 -1
- package/dist/ts/ts/ContractIO/ContractIO.d.ts +3 -3
- package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
- package/dist/ts/ts/ContractIO/ContractIO.js +30 -23
- package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Assay.js +4 -3
- package/dist/ts/ts/Conversion/Investigation.js +2 -2
- package/dist/ts/ts/Conversion/Person.d.ts +1 -1
- package/dist/ts/ts/Conversion/Person.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Person.js +27 -11
- package/dist/ts/ts/Conversion/Run.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Run.js +3 -2
- package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/ScholarlyArticle.js +2 -1
- package/dist/ts/ts/Conversion/Study.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Study.js +5 -4
- package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Workflow.js +13 -12
- package/dist/ts/ts/Conversion.d.ts +14 -10
- package/dist/ts/ts/Conversion.d.ts.map +1 -1
- package/dist/ts/ts/Conversion.js +18 -11
- package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
- package/dist/ts/ts/Core/ArcTypes.js +18 -0
- package/dist/ts/ts/Core/Datamap.d.ts.map +1 -1
- package/dist/ts/ts/Core/Datamap.js +4 -2
- package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map +1 -1
- package/dist/ts/ts/Core/OntologyAnnotation.js +76 -2
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +3 -0
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/ArcTableAux.js +23 -10
- package/dist/ts/ts/Core/Table/ArcTables.d.ts +1 -0
- package/dist/ts/ts/Core/Table/ArcTables.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/ArcTables.js +7 -3
- package/dist/ts/ts/Json.d.ts +2 -2
- package/dist/ts/ts/Json.d.ts.map +1 -1
- package/dist/ts/ts/Json.js +3 -3
- package/dist/ts/ts/WorkflowGraph/ReferenceParsing.d.ts.map +1 -1
- package/dist/ts/ts/WorkflowGraph/ReferenceParsing.js +2 -1
- package/dist/ts/ts/Yaml/ValidationPackage.d.ts +1 -1
- package/dist/ts/ts/Yaml/ValidationPackage.d.ts.map +1 -1
- package/dist/ts/ts/Yaml/ValidationPackage.js +5 -5
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts +1 -1
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts.map +1 -1
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -5
- package/dist/ts/ts/Yaml.js +1 -1
- package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Decode.fs.js +96 -24
- package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Persil.fs.js +11 -159
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Preprocessing.fs.js +319 -0
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Reader.fs.js +1867 -0
- package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Regex.fs.js +1 -1
- package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/RegexActivePatterns.fs.js +2 -2
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Syntax.fs.js +819 -0
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Writer.fs.js +686 -0
- package/package.json +1 -1
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/FlowToBlock.fs.js +0 -956
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Preprocessing.fs.js +0 -139
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Reader.fs.js +0 -1314
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Writer.fs.js +0 -391
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Encode.fs.js +0 -0
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Escapes.fs.js +0 -0
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Interop/JsInterop.fs.js +0 -0
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/StringBuffer.fs.js +0 -0
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/YAMLiciousTypes.fs.js +0 -0
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import { length, takeWhile } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
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import { trimStart, substring } from '../../../node_modules/@fable-org/fable-library-js/String.js';
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import { isWhiteSpace } from '../../../node_modules/@fable-org/fable-library-js/Char.js';
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import { Config_init_71136F3F, Config__get_WhitespaceString, Config, PreprocessorElement_Line, PreprocessorElement_Intendation, Preprocessor, PreprocessorElement_Level } from './YAMLiciousTypes.fs.js';
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import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
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import { StringBuffer_$ctor, StringBuffer__AppendLine_Z721C83C5 } from './StringBuffer.fs.js';
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import { getEnumerator, disposeSafe } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
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import { toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
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import { pipeline } from './Persil.fs.js';
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import { isEmpty, tail, head, cons, takeWhile as takeWhile$1, skipWhile, reverse, empty, ofArray, ofSeq } from '../../../node_modules/@fable-org/fable-library-js/List.js';
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function ReadHelpers_indentLevel(line) {
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return length(takeWhile((c) => c === " ", line.split("")));
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}
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function isDocumentMarker(marker, line) {
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const trimmed = trimStart(line);
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if (!trimmed.startsWith(marker)) {
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return false;
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} else if (trimmed.length === marker.length) {
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return true;
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} else {
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return isWhiteSpace(trimmed[marker.length]);
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}
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}
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function isDocumentStart(line) {
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return isDocumentMarker("---", line);
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}
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function isDocumentEnd(line) {
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return isDocumentMarker("...", line);
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}
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function write(rootElement, fconfig) {
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let config_1;
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const config = Config_init_71136F3F();
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config_1 = fconfig != null ? value(fconfig)(config) : config;
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const sb = StringBuffer_$ctor();
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const loop = (current, sb_1, config_2) => {
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switch (current.tag) {
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case /* Intendation */
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1: {
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const nextConfig = new Config(config_2.Whitespace, config_2.Level + 1);
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const enumerator = getEnumerator(current.fields[0]);
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try {
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while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
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loop(enumerator["System.Collections.Generic.IEnumerator`1.get_Current"](), sb_1, nextConfig);
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}
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} finally {
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disposeSafe(enumerator);
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}
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break;
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}
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case /* Level */
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0: {
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const enumerator_1 = getEnumerator(current.fields[0]);
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try {
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while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
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loop(enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"](), sb_1, config_2);
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}
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} finally {
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disposeSafe(enumerator_1);
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}
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break;
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}
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case /* Nil */
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break;
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}
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default: {
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const line = current.fields[0];
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StringBuffer__AppendLine_Z721C83C5(sb_1, Config__get_WhitespaceString(config_2) + line);
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}
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}
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};
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loop(rootElement, sb, config_1);
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return toString(sb);
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}
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function read(yamlStr) {
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const content = pipeline(yamlStr);
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const stripIndent = (indent, line) => {
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if (indent <= 0) {
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return line;
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} else if (line.length >= indent) {
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return substring(line, indent);
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} else {
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return trimStart(line);
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}
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};
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const loop = (lines_mut, currentIntendation_mut, acc_mut) => {
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loop:
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while (true) {
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const lines = lines_mut, currentIntendation = currentIntendation_mut, acc = acc_mut;
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if (!isEmpty(lines)) {
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const rest = tail(lines);
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const line_1 = head(lines);
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const isEmptyLine = line_1.trim() === "";
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const nextIntendation = (isEmptyLine ? currentIntendation : ReadHelpers_indentLevel(line_1)) | 0;
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if (nextIntendation === currentIntendation) {
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lines_mut = rest;
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currentIntendation_mut = currentIntendation;
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acc_mut = cons(PreprocessorElement_Line(isEmptyLine ? "" : stripIndent(currentIntendation, line_1)), acc);
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continue loop;
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} else {
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const lineText_1 = isEmptyLine ? "" : stripIndent(nextIntendation, line_1);
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const nextLevelLines = takeWhile$1((l) => {
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if (l.trim() === "") {
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return true;
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} else {
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return ReadHelpers_indentLevel(l) > currentIntendation;
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}
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}, rest);
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lines_mut = skipWhile((l_1) => {
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if (l_1.trim() === "") {
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return true;
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return ReadHelpers_indentLevel(l_1) > currentIntendation;
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}
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}, rest);
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currentIntendation_mut = currentIntendation;
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acc_mut = cons(PreprocessorElement_Intendation(cons(PreprocessorElement_Line(lineText_1), reverse(loop(nextLevelLines, nextIntendation, empty())))), acc);
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continue loop;
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}
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} else {
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return acc;
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}
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break;
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}
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};
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return new Preprocessor(PreprocessorElement_Level(reverse(loop(ofArray(content.Lines), 0, empty()))), content.StringMap, content.CommentMap, content.YAMLVersion, content.TagHandles);
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}
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function mkLine(line) {
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return PreprocessorElement_Line(line);
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}
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function mklLevel(children) {
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return PreprocessorElement_Level(ofSeq(children));
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}
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function mkIntendation(children) {
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return PreprocessorElement_Intendation(ofSeq(children));
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}
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export { ReadHelpers_indentLevel, isDocumentEnd, isDocumentStart, mkIntendation, mkLine, mklLevel, read, write };
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