@nfdi4plants/arctrl 3.0.3 → 3.1.1

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Files changed (107) hide show
  1. package/dist/ts/node_modules/@fable-org/fable-library-js/System.Collections.Generic.js +320 -0
  2. package/dist/ts/ts/ARC.d.ts +3 -3
  3. package/dist/ts/ts/ARC.d.ts.map +1 -1
  4. package/dist/ts/ts/ARC.js +72 -93
  5. package/dist/ts/ts/CWL/CWLTypes.d.ts +162 -45
  6. package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -1
  7. package/dist/ts/ts/CWL/CWLTypes.js +495 -104
  8. package/dist/ts/ts/CWL/Decode.d.ts +292 -46
  9. package/dist/ts/ts/CWL/Decode.d.ts.map +1 -1
  10. package/dist/ts/ts/CWL/Decode.js +951 -563
  11. package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts +37 -0
  12. package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts.map +1 -0
  13. package/dist/ts/ts/CWL/DynamicObjHelpers.js +57 -0
  14. package/dist/ts/ts/CWL/Encode.d.ts +117 -2
  15. package/dist/ts/ts/CWL/Encode.d.ts.map +1 -1
  16. package/dist/ts/ts/CWL/Encode.js +447 -193
  17. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts +8 -3
  18. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map +1 -1
  19. package/dist/ts/ts/CWL/ExpressionToolDescription.js +20 -4
  20. package/dist/ts/ts/CWL/Inputs.d.ts +65 -14
  21. package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -1
  22. package/dist/ts/ts/CWL/Inputs.js +194 -51
  23. package/dist/ts/ts/CWL/OperationDescription.d.ts +8 -3
  24. package/dist/ts/ts/CWL/OperationDescription.d.ts.map +1 -1
  25. package/dist/ts/ts/CWL/OperationDescription.js +20 -4
  26. package/dist/ts/ts/CWL/Outputs.d.ts +51 -12
  27. package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -1
  28. package/dist/ts/ts/CWL/Outputs.js +152 -76
  29. package/dist/ts/ts/CWL/ParameterReference.d.ts +4 -1
  30. package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -1
  31. package/dist/ts/ts/CWL/ParameterReference.js +17 -6
  32. package/dist/ts/ts/CWL/Requirements.d.ts +140 -50
  33. package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -1
  34. package/dist/ts/ts/CWL/Requirements.js +458 -127
  35. package/dist/ts/ts/CWL/ToolDescription.d.ts +31 -3
  36. package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -1
  37. package/dist/ts/ts/CWL/ToolDescription.js +83 -4
  38. package/dist/ts/ts/CWL/WorkflowDescription.d.ts +8 -3
  39. package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -1
  40. package/dist/ts/ts/CWL/WorkflowDescription.js +20 -4
  41. package/dist/ts/ts/CWL/WorkflowSteps.d.ts +50 -19
  42. package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -1
  43. package/dist/ts/ts/CWL/WorkflowSteps.js +152 -23
  44. package/dist/ts/ts/Contract/Git.d.ts.map +1 -1
  45. package/dist/ts/ts/Contract/Git.js +1 -1
  46. package/dist/ts/ts/ContractIO/ContractIO.d.ts +3 -3
  47. package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
  48. package/dist/ts/ts/ContractIO/ContractIO.js +30 -23
  49. package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -1
  50. package/dist/ts/ts/Conversion/Assay.js +4 -3
  51. package/dist/ts/ts/Conversion/Investigation.js +2 -2
  52. package/dist/ts/ts/Conversion/Person.d.ts +1 -1
  53. package/dist/ts/ts/Conversion/Person.d.ts.map +1 -1
  54. package/dist/ts/ts/Conversion/Person.js +27 -11
  55. package/dist/ts/ts/Conversion/Run.d.ts.map +1 -1
  56. package/dist/ts/ts/Conversion/Run.js +3 -2
  57. package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -1
  58. package/dist/ts/ts/Conversion/ScholarlyArticle.js +2 -1
  59. package/dist/ts/ts/Conversion/Study.d.ts.map +1 -1
  60. package/dist/ts/ts/Conversion/Study.js +5 -4
  61. package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -1
  62. package/dist/ts/ts/Conversion/Workflow.js +13 -12
  63. package/dist/ts/ts/Conversion.d.ts +14 -10
  64. package/dist/ts/ts/Conversion.d.ts.map +1 -1
  65. package/dist/ts/ts/Conversion.js +18 -11
  66. package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
  67. package/dist/ts/ts/Core/ArcTypes.js +18 -0
  68. package/dist/ts/ts/Core/Datamap.d.ts.map +1 -1
  69. package/dist/ts/ts/Core/Datamap.js +4 -2
  70. package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map +1 -1
  71. package/dist/ts/ts/Core/OntologyAnnotation.js +76 -2
  72. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +3 -0
  73. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -1
  74. package/dist/ts/ts/Core/Table/ArcTableAux.js +23 -10
  75. package/dist/ts/ts/Core/Table/ArcTables.d.ts +1 -0
  76. package/dist/ts/ts/Core/Table/ArcTables.d.ts.map +1 -1
  77. package/dist/ts/ts/Core/Table/ArcTables.js +7 -3
  78. package/dist/ts/ts/Json.d.ts +2 -2
  79. package/dist/ts/ts/Json.d.ts.map +1 -1
  80. package/dist/ts/ts/Json.js +3 -3
  81. package/dist/ts/ts/WorkflowGraph/ReferenceParsing.d.ts.map +1 -1
  82. package/dist/ts/ts/WorkflowGraph/ReferenceParsing.js +2 -1
  83. package/dist/ts/ts/Yaml/ValidationPackage.d.ts +1 -1
  84. package/dist/ts/ts/Yaml/ValidationPackage.d.ts.map +1 -1
  85. package/dist/ts/ts/Yaml/ValidationPackage.js +5 -5
  86. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts +1 -1
  87. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts.map +1 -1
  88. package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -5
  89. package/dist/ts/ts/Yaml.js +1 -1
  90. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Decode.fs.js +96 -24
  91. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Persil.fs.js +11 -159
  92. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Preprocessing.fs.js +319 -0
  93. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Reader.fs.js +1867 -0
  94. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Regex.fs.js +1 -1
  95. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/RegexActivePatterns.fs.js +2 -2
  96. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Syntax.fs.js +819 -0
  97. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Writer.fs.js +686 -0
  98. package/package.json +1 -1
  99. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/FlowToBlock.fs.js +0 -956
  100. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Preprocessing.fs.js +0 -139
  101. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Reader.fs.js +0 -1314
  102. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Writer.fs.js +0 -391
  103. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Encode.fs.js +0 -0
  104. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Escapes.fs.js +0 -0
  105. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Interop/JsInterop.fs.js +0 -0
  106. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/StringBuffer.fs.js +0 -0
  107. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/YAMLiciousTypes.fs.js +0 -0
@@ -7,7 +7,7 @@ const ExplicitKeyWithValuePattern = "^\\?\\s+(.+)$";
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  const ExplicitValuePattern = "^:\\s*(.*)$";
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  const LineCommentPattern = `^${"<c f=(?<comment>\\d+)\\/>"}$`;
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  const ValuePattern = `^(?<value>.*?)\\s*?(${"<c f=(?<comment>\\d+)\\/>"})?$`;
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- const FlowStyleArrayPattern = `^\\[(?<inlineSequence>.+)\\]\\s*?(${"<c f=(?<comment>\\d+)\\/>"})?$`;
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+ const FlowStyleArrayPattern = `^\\[(?<inlineSequence>.*)\\]\\s*?(${"<c f=(?<comment>\\d+)\\/>"})?$`;
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  const InlineSequencePattern = FlowStyleArrayPattern;
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  const FlowStyleObjectPattern = `^\\{(?<inlineSequence>.*)\\}\\s*?(${"<c f=(?<comment>\\d+)\\/>"})?$`;
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  const InlineJSONPattern = FlowStyleObjectPattern;
@@ -3,7 +3,7 @@ import { parse } from '../../../node_modules/@fable-org/fable-library-js/Int32.j
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  import { match, create } from '../../../node_modules/@fable-org/fable-library-js/RegExp.js';
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  import { KeyPattern, ValuePattern, LineCommentPattern, FlowStyleArrayPattern, SequenceOpenerPattern, SequenceCloserPattern, FlowStyleObjectPattern, FlowStyleObjectOpenerPattern, FlowStyleObjectCloserPattern, AnchorPattern, AliasPattern, VerbatimTagPattern } from './Regex.fs.js';
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  import { unwrap, some } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
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- import { isDocumentEnd } from './Preprocessing.fs.js';
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+ import { Document_isEnd } from './Syntax.fs.js';
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  function trimForPattern(s) {
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  return trimStart(s);
@@ -236,7 +236,7 @@ function $007CDocumentEnd$007C_$007C(input) {
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  let matchResult, s_1;
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  if (input.tag === /* Line */
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  2) {
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- if (isDocumentEnd(input.fields[0])) {
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+ if (Document_isEnd(input.fields[0])) {
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  matchResult = 0;
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  s_1 = input.fields[0];
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  } else {