@nfdi4plants/arctrl 3.0.3 → 3.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ts/node_modules/@fable-org/fable-library-js/System.Collections.Generic.js +320 -0
- package/dist/ts/ts/ARC.d.ts +3 -3
- package/dist/ts/ts/ARC.d.ts.map +1 -1
- package/dist/ts/ts/ARC.js +72 -93
- package/dist/ts/ts/CWL/CWLTypes.d.ts +162 -45
- package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -1
- package/dist/ts/ts/CWL/CWLTypes.js +495 -104
- package/dist/ts/ts/CWL/Decode.d.ts +292 -46
- package/dist/ts/ts/CWL/Decode.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Decode.js +951 -563
- package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts +37 -0
- package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts.map +1 -0
- package/dist/ts/ts/CWL/DynamicObjHelpers.js +57 -0
- package/dist/ts/ts/CWL/Encode.d.ts +117 -2
- package/dist/ts/ts/CWL/Encode.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Encode.js +447 -193
- package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts +8 -3
- package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ExpressionToolDescription.js +20 -4
- package/dist/ts/ts/CWL/Inputs.d.ts +65 -14
- package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Inputs.js +194 -51
- package/dist/ts/ts/CWL/OperationDescription.d.ts +8 -3
- package/dist/ts/ts/CWL/OperationDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/OperationDescription.js +20 -4
- package/dist/ts/ts/CWL/Outputs.d.ts +51 -12
- package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Outputs.js +152 -76
- package/dist/ts/ts/CWL/ParameterReference.d.ts +4 -1
- package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ParameterReference.js +17 -6
- package/dist/ts/ts/CWL/Requirements.d.ts +140 -50
- package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Requirements.js +458 -127
- package/dist/ts/ts/CWL/ToolDescription.d.ts +31 -3
- package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ToolDescription.js +83 -4
- package/dist/ts/ts/CWL/WorkflowDescription.d.ts +8 -3
- package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/WorkflowDescription.js +20 -4
- package/dist/ts/ts/CWL/WorkflowSteps.d.ts +50 -19
- package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -1
- package/dist/ts/ts/CWL/WorkflowSteps.js +152 -23
- package/dist/ts/ts/Contract/Git.d.ts.map +1 -1
- package/dist/ts/ts/Contract/Git.js +1 -1
- package/dist/ts/ts/ContractIO/ContractIO.d.ts +3 -3
- package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
- package/dist/ts/ts/ContractIO/ContractIO.js +30 -23
- package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Assay.js +4 -3
- package/dist/ts/ts/Conversion/Investigation.js +2 -2
- package/dist/ts/ts/Conversion/Person.d.ts +1 -1
- package/dist/ts/ts/Conversion/Person.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Person.js +27 -11
- package/dist/ts/ts/Conversion/Run.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Run.js +3 -2
- package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/ScholarlyArticle.js +2 -1
- package/dist/ts/ts/Conversion/Study.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Study.js +5 -4
- package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Workflow.js +13 -12
- package/dist/ts/ts/Conversion.d.ts +14 -10
- package/dist/ts/ts/Conversion.d.ts.map +1 -1
- package/dist/ts/ts/Conversion.js +18 -11
- package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
- package/dist/ts/ts/Core/ArcTypes.js +18 -0
- package/dist/ts/ts/Core/Datamap.d.ts.map +1 -1
- package/dist/ts/ts/Core/Datamap.js +4 -2
- package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map +1 -1
- package/dist/ts/ts/Core/OntologyAnnotation.js +76 -2
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +3 -0
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/ArcTableAux.js +23 -10
- package/dist/ts/ts/Core/Table/ArcTables.d.ts +1 -0
- package/dist/ts/ts/Core/Table/ArcTables.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/ArcTables.js +7 -3
- package/dist/ts/ts/Json.d.ts +2 -2
- package/dist/ts/ts/Json.d.ts.map +1 -1
- package/dist/ts/ts/Json.js +3 -3
- package/dist/ts/ts/WorkflowGraph/ReferenceParsing.d.ts.map +1 -1
- package/dist/ts/ts/WorkflowGraph/ReferenceParsing.js +2 -1
- package/dist/ts/ts/Yaml/ValidationPackage.d.ts +1 -1
- package/dist/ts/ts/Yaml/ValidationPackage.d.ts.map +1 -1
- package/dist/ts/ts/Yaml/ValidationPackage.js +5 -5
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts +1 -1
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts.map +1 -1
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -5
- package/dist/ts/ts/Yaml.js +1 -1
- package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Decode.fs.js +96 -24
- package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Persil.fs.js +11 -159
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Preprocessing.fs.js +319 -0
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Reader.fs.js +1867 -0
- package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Regex.fs.js +1 -1
- package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/RegexActivePatterns.fs.js +2 -2
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Syntax.fs.js +819 -0
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Writer.fs.js +686 -0
- package/package.json +1 -1
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/FlowToBlock.fs.js +0 -956
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Preprocessing.fs.js +0 -139
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Reader.fs.js +0 -1314
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.5/Writer.fs.js +0 -391
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Encode.fs.js +0 -0
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Escapes.fs.js +0 -0
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/Interop/JsInterop.fs.js +0 -0
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/StringBuffer.fs.js +0 -0
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.5 → YAMLicious.1.0.0-alpha.11}/YAMLiciousTypes.fs.js +0 -0
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import { unwrap, toArray } from '../../node_modules/@fable-org/fable-library-js/Option.js';
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import { Union } from '../../node_modules/@fable-org/fable-library-js/Types.js';
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import { union_type, class_type, string_type, obj_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
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import { equals, arrayHash, comparePrimitives } from '../../node_modules/@fable-org/fable-library-js/Util.js';
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import { dynamicPropertiesEqual, hashDynamicProperties } from './DynamicObjHelpers.js';
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import { ofSeq } from '../../node_modules/@fable-org/fable-library-js/Set.js';
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import { filter, iterate, tryFindIndex } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
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import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
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import { filter, iterate, tryFindIndex } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
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class StepInput extends
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class StepInput extends DynamicObj {
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constructor(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label) {
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this._doc = doc;
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set Id(value) {
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this$._id = value;
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get Source() {
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set Source(value) {
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this$._source = value;
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get DefaultValue() {
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set DefaultValue(value) {
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this$._defaultValue = value;
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get ValueFrom() {
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set ValueFrom(value) {
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this$._valueFrom = value;
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get LinkMerge() {
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set LinkMerge(value) {
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this$._linkMerge = value;
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}
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get PickValue() {
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set PickValue(value) {
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}
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get Doc() {
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set Doc(value) {
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this$._doc = value;
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}
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get LoadContents() {
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set LoadContents(value) {
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this$._loadContents = value;
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}
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get LoadListing() {
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this$._loadListing = value;
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}
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get Label() {
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set Label(value) {
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}
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Equals(o) {
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let other;
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const this$ = this;
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return o instanceof StepInput && (other = o, this$.Id === other.Id && equals(this$.Source, other.Source) && equals(this$.DefaultValue, other.DefaultValue) && equals(this$.ValueFrom, other.ValueFrom) && equals(this$.LinkMerge, other.LinkMerge) && equals(this$.PickValue, other.PickValue) && equals(this$.Doc, other.Doc) && equals(this$.LoadContents, other.LoadContents) && equals(this$.LoadListing, other.LoadListing) && equals(this$.Label, other.Label) && dynamicPropertiesEqual(this$, other));
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}
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GetHashCode() {
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const this$ = this;
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return arrayHash([this$.Id, this$.Source, this$.DefaultValue, this$.ValueFrom, this$.LinkMerge, this$.PickValue, this$.Doc, this$.LoadContents, this$.LoadListing, this$.Label, hashDynamicProperties(this$)]) | 0;
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}
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static create(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label) {
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return new StepInput(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label);
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return new StepInput(id, unwrap(source), unwrap(defaultValue), unwrap(valueFrom), unwrap(linkMerge), unwrap(pickValue), unwrap(doc), unwrap(loadContents), unwrap(loadListing), unwrap(label));
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}
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static get KnownFieldNames() {
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return ofSeq(["id", "source", "default", "valueFrom", "linkMerge", "pickValue", "doc", "loadContents", "loadListing", "label"], {
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});
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if (index < 0 ? true : index >= inputs.length) {
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return class_type("ARCtrl.CWL.StepInput", void 0, StepInput, DynamicObj_$reflection());
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}
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function StepInput_$ctor_Z25C6E1C5(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label) {
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return new StepInput(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label);
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}
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GetHashCode() {
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});
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}
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}
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function StepOutputParameter_$ctor_Z721C83C5(id) {
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return new StepOutputParameter(id);
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static fromRunPath(id, in_, out_, runPath, label, doc, scatter, scatterMethod, when_, requirements, hints) {
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return new WorkflowStep(id, in_, out_, WorkflowStepRun_RunString(runPath), unwrap(label), unwrap(doc), unwrap(scatter), unwrap(scatterMethod), unwrap(when_), unwrap(requirements), unwrap(hints));
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}
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static get KnownFieldNames() {
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return ofSeq(["id", "run", "in", "out", "requirements", "hints", "label", "doc", "scatter", "scatterMethod", "when"], {
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Compare: comparePrimitives
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});
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}
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-
export { LinkMergeMethod, LinkMergeMethod_$reflection, LinkMergeMethod_MergeFlattened, LinkMergeMethod_MergeNested, PickValueMethod, PickValueMethod_$reflection, PickValueMethod_AllNonNull, PickValueMethod_FirstNonNull, PickValueMethod_TheOnlyNonNull, ScatterMethod, ScatterMethod_$reflection, ScatterMethod_DotProduct, ScatterMethod_FlatCrossProduct, ScatterMethod_NestedCrossProduct, StepInput, StepInput_$reflection, StepOutput, StepOutputParameter, StepOutputParameter_$reflection, StepOutput_$reflection, StepOutput_StepOutputRecord, StepOutput_StepOutputString, WorkflowStep, WorkflowStepRun, WorkflowStepRun_$reflection, WorkflowStepRun_RunCommandLineTool, WorkflowStepRun_RunExpressionTool, WorkflowStepRun_RunOperation, WorkflowStepRun_RunString, WorkflowStepRun_RunWorkflow, WorkflowStep_$ctor_Z76380C57, WorkflowStep_$reflection };
|
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+
export { LinkMergeMethod, LinkMergeMethod_$reflection, LinkMergeMethod_MergeFlattened, LinkMergeMethod_MergeNested, PickValueMethod, PickValueMethod_$reflection, PickValueMethod_AllNonNull, PickValueMethod_FirstNonNull, PickValueMethod_TheOnlyNonNull, ScatterMethod, ScatterMethod_$reflection, ScatterMethod_DotProduct, ScatterMethod_FlatCrossProduct, ScatterMethod_NestedCrossProduct, StepInput, StepInput_$ctor_Z25C6E1C5, StepInput_$reflection, StepOutput, StepOutputParameter, StepOutputParameter_$ctor_Z721C83C5, StepOutputParameter_$reflection, StepOutput_$reflection, StepOutput_StepOutputRecord, StepOutput_StepOutputString, WorkflowStep, WorkflowStepRun, WorkflowStepRun_$reflection, WorkflowStepRun_RunCommandLineTool, WorkflowStepRun_RunExpressionTool, WorkflowStepRun_RunOperation, WorkflowStepRun_RunString, WorkflowStepRun_RunWorkflow, WorkflowStep_$ctor_Z76380C57, WorkflowStep_$reflection };
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"Git.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/Git.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AAClD,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAKjF,wBAAgB,WAAW,CAAC,UAAU,EAAE,MAAM,EAAE,GAAG,OAAO,CAEzD;AAED,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,GAAG,QAAQ,CAEhF;AAED,wBAAgB,iBAAiB,CAAC,UAAU,EAAE,MAAM,EAAE,GAAG,QAAQ,CAEhE;AAED,eAAO,MAAM,iBAAiB,EAAE,
|
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1
|
+
{"version":3,"file":"Git.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/Git.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AAClD,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAKjF,wBAAgB,WAAW,CAAC,UAAU,EAAE,MAAM,EAAE,GAAG,OAAO,CAEzD;AAED,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,GAAG,QAAQ,CAEhF;AAED,wBAAgB,iBAAiB,CAAC,UAAU,EAAE,MAAM,EAAE,GAAG,QAAQ,CAEhE;AAED,eAAO,MAAM,iBAAiB,EAAE,QAA0hD,CAAC;AAE3jD,eAAO,MAAM,qBAAqB,EAAE,QAAoH,CAAC;AAEzJ,qBAAa,IAAI;;CAGhB;AAED,wBAAgB,gBAAgB,IAAI,QAAQ,CAE3C;AAED,qBAAa,KAAK;;CAGjB;AAED,wBAAgB,iBAAiB,IAAI,QAAQ,CAE5C;AAED,wBAAgB,aAAa,IAAI,MAAM,CAEtC;AAED,wBAAgB,mBAAmB,IAAI,MAAM,CAE5C;AAED,wBAAgB,eAAe,IAAI,MAAM,CAExC;AAED,wBAAgB,YAAY,IAAI,MAAM,CAErC;AAED,wBAAgB,eAAe,IAAI,MAAM,CAExC;AAED,wBAAgB,gCAAgC,CAAC,MAAM,CAAC,EAAE,MAAM,GAAG,QAAQ,CAG1E;AAED,wBAAgB,sCAAsC,CAAC,SAAS,EAAE,MAAM,GAAG,QAAQ,CAElF;AAED,wBAAgB,eAAe,IAAI,MAAM,CAExC;AAED,wBAAgB,oBAAoB,IAAI,MAAM,CAE7C;AAED,wBAAgB,qBAAqB,IAAI,MAAM,CAE9C;AAED,wBAAgB,sBAAsB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,CAE1F;AAED,wBAAgB,kCAAkC,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,QAAQ,CAK3J"}
|
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@@ -13,7 +13,7 @@ function createGitContractAt(path, arguments$) {
|
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13
|
function createGitContract(arguments$) {
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|
return Contract.createExecute(gitWithArgs(arguments$));
|
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}
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|
-
const gitignoreContract = Contract.createCreate(".gitignore", "PlainText", "# ----- macos rules -----\r\n# taken from https://github.com/github/gitignore/blob/main/Global/macOS.gitignore\r\n# General\r\n.DS_Store\r\n.AppleDouble\r\n.LSOverride\r\n# Icon must end with two \\r\r\nIcon\r\n# Thumbnails\r\n._*\r\n# Files that might appear in the root of a volume\r\n.DocumentRevisions-V100\r\n.fseventsd\r\n.Spotlight-V100\r\n.TemporaryItems\r\n.Trashes\r\n.VolumeIcon.icns\r\n.com.apple.timemachine.donotpresent\r\n# Directories potentially created on remote AFP share\r\n.AppleDB\r\n.AppleDesktop\r\nNetwork Trash Folder\r\nTemporary Items\r\n.apdisk\r\n# ----- windows rules -----\r\n# taken from https://github.com/github/gitignore/blob/main/Global/Windows.gitignore\r\n# Windows thumbnail cache files\r\nThumbs.db\r\nThumbs.db:encryptable\r\nehthumbs.db\r\nehthumbs_vista.db\r\n# Dump file\r\n*.stackdump\r\n# Folder config file\r\n[Dd]esktop.ini\r\n# Recycle Bin used on file shares\r\n$RECYCLE.BIN/\r\n# Windows Installer files\r\n*.cab\r\n*.msi\r\n*.msix\r\n*.msm\r\n*.msp\r\n# Windows shortcuts\r\n*.lnk\r\n# ----- linux rules -----\r\n# taken from https://github.com/github/gitignore/blob/main/Global/Linux.gitignore\r\n*~\r\n# temporary files which can be created if a process still has a handle open of a deleted file\r\n.fuse_hidden*\r\n# KDE directory preferences\r\n.directory\r\n# Linux trash folder which might appear on any partition or disk\r\n.Trash-*\r\n# .nfs files are created when an open file is removed but is still being accessed\r\n.nfs*\r\n");
|
|
16
|
+
const gitignoreContract = Contract.createCreate(".gitignore", "PlainText", "# ----- macos rules -----\r\n# taken from https://github.com/github/gitignore/blob/main/Global/macOS.gitignore\r\n# General\r\n.DS_Store\r\n.AppleDouble\r\n.LSOverride\r\n# Icon must end with two \\r\r\nIcon\r\n# Thumbnails\r\n._*\r\n# Files that might appear in the root of a volume\r\n.DocumentRevisions-V100\r\n.fseventsd\r\n.Spotlight-V100\r\n.TemporaryItems\r\n.Trashes\r\n.VolumeIcon.icns\r\n.com.apple.timemachine.donotpresent\r\n# Directories potentially created on remote AFP share\r\n.AppleDB\r\n.AppleDesktop\r\nNetwork Trash Folder\r\nTemporary Items\r\n.apdisk\r\n# ----- windows rules -----\r\n# taken from https://github.com/github/gitignore/blob/main/Global/Windows.gitignore\r\n# Windows thumbnail cache files\r\nThumbs.db\r\nThumbs.db:encryptable\r\nehthumbs.db\r\nehthumbs_vista.db\r\n# Dump file\r\n*.stackdump\r\n# Folder config file\r\n[Dd]esktop.ini\r\n# Recycle Bin used on file shares\r\n$RECYCLE.BIN/\r\n# Windows Installer files\r\n*.cab\r\n*.msi\r\n*.msix\r\n*.msm\r\n*.msp\r\n# Windows shortcuts\r\n*.lnk\r\n# ----- linux rules -----\r\n*.swp\r\n# taken from https://github.com/github/gitignore/blob/main/Global/Linux.gitignore\r\n*~\r\n# temporary files which can be created if a process still has a handle open of a deleted file\r\n.fuse_hidden*\r\n# KDE directory preferences\r\n.directory\r\n# Linux trash folder which might appear on any partition or disk\r\n.Trash-*\r\n# .nfs files are created when an open file is removed but is still being accessed\r\n.nfs*\r\n");
|
|
17
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|
const gitattributesContract = Contract.createCreate(".gitattributes", "PlainText", "**/dataset/** filter=lfs diff=lfs merge=lfs -text");
|
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@@ -2,10 +2,10 @@ import { FSharpResult$2_$union } from '@fable-org/fable-library-js/Result.js';
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2
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import { Contract } from '../Contract/Contract.js';
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export declare function fulfillReadContractAsync(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
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export declare function fullfillContractBatchAsyncBy(contractF: ((arg0: string, arg1: Contract) => Promise<FSharpResult$2_$union<Contract, string>>), basePath: string, cs: Contract[]): Promise<FSharpResult$2_$union<Contract[], string[]>>;
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|
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export declare function fulfillWriteContractAsync(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
|
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5
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+
export declare function fulfillWriteContractAsync(forceOverwrite: boolean, basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
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export declare function fullfillDeleteContractAsync(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
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export declare function fullFillContract(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
|
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|
-
export declare function fullFillContractBatchAsync(basePath: string, cs: Contract[]): Promise<FSharpResult$2_$union<Contract[], string[]>>;
|
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|
+
export declare function fullFillContract(forceOverwrite: boolean, basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
|
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|
+
export declare function fullFillContractBatchAsync(forceOverwrite: boolean, basePath: string, cs: Contract[]): Promise<FSharpResult$2_$union<Contract[], string[]>>;
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//# sourceMappingURL=ContractIO.d.ts.map
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|
@@ -1 +1 @@
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|
1
|
-
{"version":3,"file":"ContractIO.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/ContractIO/ContractIO.ts"],"names":[],"mappings":"AAEA,OAAO,EAAqB,qBAAqB,EAAwB,MAAM,uCAAuC,CAAC;AACvH,OAAO,EAAoC,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AAWrF,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAkDxH;AAED,wBAAgB,4BAA4B,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,KAAK,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC,CA+BpO;AAED,wBAAgB,yBAAyB,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,
|
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1
|
+
{"version":3,"file":"ContractIO.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/ContractIO/ContractIO.ts"],"names":[],"mappings":"AAEA,OAAO,EAAqB,qBAAqB,EAAwB,MAAM,uCAAuC,CAAC;AACvH,OAAO,EAAoC,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AAWrF,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAkDxH;AAED,wBAAgB,4BAA4B,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,KAAK,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC,CA+BpO;AAED,wBAAgB,yBAAyB,CAAC,cAAc,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAiClJ;AAED,wBAAgB,0BAA0B,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAwB1H;AAED,wBAAgB,2BAA2B,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAwC3H;AAED,wBAAgB,2BAA2B,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAW3H;AAED,wBAAgB,gBAAgB,CAAC,cAAc,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAQzI;AAED,wBAAgB,0BAA0B,CAAC,cAAc,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC,CAE1J"}
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@@ -6,7 +6,7 @@ import { PromiseBuilder__Run_212F1D4B, PromiseBuilder__Delay_62FBFDE1 } from '..
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6
6
|
import { promise } from '../fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js';
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7
|
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|
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8
8
|
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|
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|
-
import { readFileTextAsync, readFileXlsxAsync, ensureDirectoryOfFileAsync, writeFileTextAsync, writeFileXlsxAsync, renameFileOrDirectoryAsync, deleteFileOrDirectoryAsync } from './FileSystemHelper.js';
|
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|
+
import { readFileTextAsync, readFileXlsxAsync, fileExistsAsync, ensureDirectoryOfFileAsync, writeFileTextAsync, writeFileXlsxAsync, renameFileOrDirectoryAsync, deleteFileOrDirectoryAsync } from './FileSystemHelper.js';
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@@ -92,27 +92,34 @@ function fullfillContractBatchAsyncBy(contractF, basePath, cs) {
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function fulfillWriteContractAsync(basePath, c) {
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|
+
function fulfillWriteContractAsync(forceOverwrite, basePath, c) {
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|
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let
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return FSharpResult$2_Error((
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}, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => PromiseBuilder__Delay_62FBFDE1(promise, () => {
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const
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if (
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const t = value(matchValue);
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const path = combine(basePath, c.Path);
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return ensureDirectoryOfFileAsync(path).then(() => writeFileTextAsync(path, t).then(() => Promise.resolve(FSharpResult$2_Ok(c))));
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let arg_5;
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+
return FSharpResult$2_Error((arg_5 = e_1.message, toText(printf("Error writing contract %s: %s"))(c.Path)(arg_5)));
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}, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => PromiseBuilder__Delay_62FBFDE1(promise, () => fileExistsAsync(combine(basePath, c.Path)).then((_arg) => {
|
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+
return Promise.resolve(FSharpResult$2_Ok(c));
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|
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} else if (exists && !forceOverwrite) {
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return Promise.resolve(FSharpResult$2_Error(toText(printf("Contract %s already exists and overwrite is not allowed"))(c.Path)));
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|
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|
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const
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|
-
|
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|
-
|
|
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|
+
const matchValue = c.DTO;
|
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|
+
if (matchValue == null) {
|
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108
|
+
const path_2 = combine(basePath, c.Path);
|
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|
+
return ensureDirectoryOfFileAsync(path_2).then(() => writeFileTextAsync(path_2, "").then(() => Promise.resolve(FSharpResult$2_Ok(c))));
|
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|
+
} else if (typeof value(matchValue) === "string") {
|
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|
+
const t = value(matchValue);
|
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|
+
const path = combine(basePath, c.Path);
|
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|
+
return ensureDirectoryOfFileAsync(path).then(() => writeFileTextAsync(path, t).then(() => Promise.resolve(FSharpResult$2_Ok(c))));
|
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|
+
} else {
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|
+
const wb = value(matchValue);
|
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|
+
const path_1 = combine(basePath, c.Path);
|
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|
+
return ensureDirectoryOfFileAsync(path_1).then(() => writeFileXlsxAsync(path_1, wb).then(() => Promise.resolve(FSharpResult$2_Ok(c))));
|
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|
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}
|
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|
}
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|
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let
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-
return Promise.resolve(FSharpResult$2_Error((
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|
+
return Promise.resolve(FSharpResult$2_Error((arg_3 = _arg_7.message, toText(printf("Error writing contract %s: %s"))(c.Path)(arg_3))));
|
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|
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}
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|
function fulfillUpdateContractAsync(basePath, c) {
|
|
@@ -188,17 +195,17 @@ function fullfillDeleteContractAsync(basePath, c) {
|
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188
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|
return Promise.resolve(FSharpResult$2_Error((arg_1 = _arg_1.message, toText(printf("Error deleting contract %s: %s"))(c.Path)(arg_1))));
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|
}))));
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|
}
|
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|
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function fullFillContract(basePath, c) {
|
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|
+
function fullFillContract(forceOverwrite, basePath, c) {
|
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return FSharpResult$2_Error((arg_2 = e.message, toText(printf("Error fulfilling contract %s: %s"))(c.Path)(arg_2)));
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}, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => {
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|
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return matchValue === "READ" ? fulfillReadContractAsync(basePath, c) : matchValue === "CREATE" ? fulfillWriteContractAsync(basePath, c) : matchValue === "UPDATE" ? fulfillUpdateContractAsync(basePath, c) : matchValue === "DELETE" ? fullfillDeleteContractAsync(basePath, c) : matchValue === "RENAME" ? fullfillRenameContractAsync(basePath, c) : Promise.resolve(FSharpResult$2_Error(toText(printf("Operation %A not supported"))(c.Operation)));
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return matchValue === "READ" ? fulfillReadContractAsync(basePath, c) : matchValue === "CREATE" ? fulfillWriteContractAsync(forceOverwrite, basePath, c) : matchValue === "UPDATE" ? fulfillUpdateContractAsync(basePath, c) : matchValue === "DELETE" ? fullfillDeleteContractAsync(basePath, c) : matchValue === "RENAME" ? fullfillRenameContractAsync(basePath, c) : Promise.resolve(FSharpResult$2_Error(toText(printf("Operation %A not supported"))(c.Operation)));
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}
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function fullFillContractBatchAsync(basePath, cs) {
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return fullfillContractBatchAsyncBy(fullFillContract, basePath, cs);
|
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function fullFillContractBatchAsync(forceOverwrite, basePath, cs) {
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return fullfillContractBatchAsyncBy((basePath_1, c) => fullFillContract(forceOverwrite, basePath_1, c), basePath, cs);
|
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export { fulfillReadContractAsync, fulfillUpdateContractAsync, fulfillWriteContractAsync, fullFillContract, fullFillContractBatchAsync, fullfillContractBatchAsyncBy, fullfillDeleteContractAsync, fullfillRenameContractAsync };
|
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@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"Assay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Assay.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAKzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;
|
|
1
|
+
{"version":3,"file":"Assay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Assay.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAKzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAGpD,OAAO,EAAE,QAAQ,EAAoB,MAAM,qBAAqB,CAAC;AAQjE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAGzD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,kDAAkD,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,mBAAmB,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,EAAE,CAkBtK;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAa/F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAWtH"}
|
|
@@ -7,12 +7,12 @@ import { DataAux_pathAndSelectorFromName } from '../Core/Data.js';
|
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|
7
7
|
import { LDFile } from '../ROCrate/LDTypes/File.js';
|
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8
8
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import { LDDataset } from '../ROCrate/LDTypes/Dataset.js';
|
|
9
9
|
import { BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composePropertyValueFromOA_ZDED3A0F, BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposePropertyValueToOA_Z2F770004, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
|
|
10
|
-
import {
|
|
10
|
+
import { ArcAssay } from '../Core/ArcTypes.js';
|
|
11
|
+
import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
|
|
11
12
|
import { ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586 } from './Table.js';
|
|
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13
|
import { ArcTables } from '../Core/Table/ArcTables.js';
|
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import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
|
|
14
15
|
import { Datamap } from '../Core/Datamap.js';
|
|
15
|
-
import { ArcAssay } from '../Core/ArcTypes.js';
|
|
16
16
|
import { ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
|
|
17
17
|
|
|
18
18
|
class AssayConversion {
|
|
@@ -45,7 +45,8 @@ function AssayConversion_composeAssay_Z5C53FD5C(assay, fs) {
|
|
|
45
45
|
const measurementMethod = map(BaseTypes_composeDefinedTerm_ZDED3A0F, assay.TechnologyType);
|
|
46
46
|
const measurementTechnique = map(BaseTypes_composeDefinedTerm_ZDED3A0F, assay.TechnologyPlatform);
|
|
47
47
|
const variableMeasured = map(BaseTypes_composePropertyValueFromOA_ZDED3A0F, assay.MeasurementType);
|
|
48
|
-
const
|
|
48
|
+
const persons = map((i) => i.GetAllPersons(), assay.Investigation);
|
|
49
|
+
const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, unwrap(persons)), assay.Performers));
|
|
49
50
|
const processSequence = Option_fromSeq((collection = ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(new ArcTables(assay.Tables), assay.Identifier, void 0, unwrap(fs)), Array.from(collection)));
|
|
50
51
|
const fragmentDescriptors = map(DatamapConversion_composeFragmentDescriptors_Z892BFC3, assay.Datamap);
|
|
51
52
|
const dataFiles = map((ps) => AssayConversion_getDataFilesFromProcesses_6BABD1B0(ps, unwrap(fragmentDescriptors)), processSequence);
|
|
@@ -4,7 +4,7 @@ import { tryFromString, toString } from './DateTime.js';
|
|
|
4
4
|
import { now } from '../../node_modules/@fable-org/fable-library-js/Date.js';
|
|
5
5
|
import { Option_fromSeq, ResizeArray_map, ResizeArray_choose, ResizeArray_filter } from '../Core/Helper/Collections.js';
|
|
6
6
|
import { ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, ScholarlyArticleConversion_decomposeScholarlyArticle_Z6839B9E8 } from './ScholarlyArticle.js';
|
|
7
|
-
import {
|
|
7
|
+
import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
|
|
8
8
|
import { BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
|
|
9
9
|
import { toList, delay, append } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
10
10
|
import { AssayConversion_composeAssay_Z5C53FD5C, AssayConversion_decomposeAssay_Z6839B9E8 } from './Assay.js';
|
|
@@ -33,7 +33,7 @@ function InvestigationConversion_composeInvestigation_Z284BC0AC(investigation, f
|
|
|
33
33
|
const dateCreated = bind(tryFromString, investigation.SubmissionDate);
|
|
34
34
|
const datePublished = defaultArg(bind(tryFromString, investigation.PublicReleaseDate), now());
|
|
35
35
|
const publications = Option_fromSeq(ResizeArray_map(ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, investigation.Publications));
|
|
36
|
-
const creators = Option_fromSeq(ResizeArray_map(
|
|
36
|
+
const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, investigation.GetAllPersons()), investigation.Contacts));
|
|
37
37
|
const comments = Option_fromSeq(ResizeArray_map(BaseTypes_composeComment_Z13201A7E, investigation.Comments));
|
|
38
38
|
const hasParts = Option_fromSeq((collection = toList(delay(() => append(ResizeArray_map((a_3) => AssayConversion_composeAssay_Z5C53FD5C(a_3, unwrap(fs)), investigation.Assays), delay(() => append(ResizeArray_map((s_2) => StudyConversion_composeStudy_ZFE0E38E(s_2, unwrap(fs)), investigation.Studies), delay(() => append(ResizeArray_choose((w) => {
|
|
39
39
|
try {
|
|
@@ -11,6 +11,6 @@ export declare function PersonConversion_composeAffiliation_Z721C83C5(affiliatio
|
|
|
11
11
|
export declare function PersonConversion_decomposeAffiliation_Z2F770004(affiliation: LDNode, context?: LDContext): string;
|
|
12
12
|
export declare function PersonConversion_composeAddress_Z721C83C5(address: string): any;
|
|
13
13
|
export declare function PersonConversion_decomposeAddress_4E60E31B(address: any): string;
|
|
14
|
-
export declare function
|
|
14
|
+
export declare function PersonConversion_composePerson_2B0BECCC(person: Person, persons?: Iterable<Person>): LDNode;
|
|
15
15
|
export declare function PersonConversion_decomposePerson_Z6839B9E8(person: LDNode, graph?: LDGraph, context?: LDContext): Person;
|
|
16
16
|
//# sourceMappingURL=Person.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"Person.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Person.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAMzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;
|
|
1
|
+
{"version":3,"file":"Person.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Person.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAMzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AACpD,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAU3C,qBAAa,gBAAgB;;CAG5B;AAED,wBAAgB,4BAA4B,IAAI,QAAQ,CAEvD;AAED,wBAAgB,6BAA6B,IAAI,MAAM,CAEtD;AAED,wBAAgB,6CAA6C,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAczF;AAED,wBAAgB,+CAA+C,CAAC,WAAW,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAOhH;AAED,wBAAgB,yCAAyC,CAAC,OAAO,EAAE,MAAM,GAAG,GAAG,CAW9E;AAED,wBAAgB,0CAA0C,CAAC,OAAO,EAAE,GAAG,GAAG,MAAM,CAU/E;AAED,wBAAgB,uCAAuC,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,QAAQ,CAAC,MAAM,CAAC,GAAG,MAAM,CA+B1G;AAED,wBAAgB,0CAA0C,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAevH"}
|
|
@@ -3,17 +3,18 @@ import { LDOrganization } from '../ROCrate/LDTypes/Organization.js';
|
|
|
3
3
|
import { fromString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js';
|
|
4
4
|
import { decoder, encoder } from '../Json/ROCrate/LDNode.js';
|
|
5
5
|
import { LDNode } from '../ROCrate/LDObject.js';
|
|
6
|
-
import { toText, printf } from '../../node_modules/@fable-org/fable-library-js/String.js';
|
|
7
|
-
import { isEmpty, filter } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
8
|
-
import { unwrap, value, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
6
|
+
import { toText, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
|
|
7
|
+
import { isEmpty, filter, tryFind } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
8
|
+
import { unwrap, bind, value, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
9
9
|
import { toString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Encode.fs.js';
|
|
10
|
+
import { Person } from '../Core/Person.js';
|
|
11
|
+
import { equals } from '../../node_modules/@fable-org/fable-library-js/Util.js';
|
|
12
|
+
import { tryGetOrcidNumber } from '../Core/Helper/ORCID.js';
|
|
10
13
|
import { Option_fromSeq, ResizeArray_map } from '../Core/Helper/Collections.js';
|
|
11
14
|
import { BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_decomposeDefinedTerm_Z2F770004 } from './Basic.js';
|
|
12
15
|
import { toString as toString$1 } from '../../node_modules/@fable-org/fable-library-js/Types.js';
|
|
13
16
|
import { Comment$ } from '../Core/Comment.js';
|
|
14
17
|
import { LDPerson } from '../ROCrate/LDTypes/Person.js';
|
|
15
|
-
import { Person } from '../Core/Person.js';
|
|
16
|
-
import { tryGetOrcidNumber } from '../Core/Helper/ORCID.js';
|
|
17
18
|
|
|
18
19
|
class PersonConversion {
|
|
19
20
|
constructor() {
|
|
@@ -67,19 +68,34 @@ function PersonConversion_decomposeAddress_4E60E31B(address) {
|
|
|
67
68
|
throw new Error("Address must be a string or a Json.LDNode");
|
|
68
69
|
}
|
|
69
70
|
}
|
|
70
|
-
function
|
|
71
|
-
let
|
|
72
|
-
const matchValue = person.
|
|
71
|
+
function PersonConversion_composePerson_2B0BECCC(person, persons) {
|
|
72
|
+
let orcid;
|
|
73
|
+
const matchValue = person.ORCID;
|
|
73
74
|
if (matchValue == null) {
|
|
75
|
+
orcid = persons == null ? void 0 : bind((p_1) => p_1.ORCID, tryFind((p) => {
|
|
76
|
+
if (equals(p.FirstName, person.FirstName)) {
|
|
77
|
+
return equals(p.LastName, person.LastName);
|
|
78
|
+
} else {
|
|
79
|
+
return false;
|
|
80
|
+
}
|
|
81
|
+
}, value(persons)));
|
|
82
|
+
} else {
|
|
83
|
+
const o = value(matchValue);
|
|
84
|
+
const matchValue_1 = tryGetOrcidNumber(o);
|
|
85
|
+
orcid = matchValue_1 == null ? toFail(printf("Invalid ORCID: %s"))(o) : value(matchValue_1);
|
|
86
|
+
}
|
|
87
|
+
let givenName;
|
|
88
|
+
const matchValue_2 = person.FirstName;
|
|
89
|
+
if (matchValue_2 == null) {
|
|
74
90
|
throw new Error("Person must have a given name");
|
|
75
91
|
} else {
|
|
76
|
-
givenName = value(
|
|
92
|
+
givenName = value(matchValue_2);
|
|
77
93
|
}
|
|
78
94
|
const jobTitles = Option_fromSeq(ResizeArray_map(BaseTypes_composeDefinedTerm_ZDED3A0F, person.Roles));
|
|
79
95
|
const disambiguatingDescriptions = Option_fromSeq(ResizeArray_map(toString$1, person.Comments));
|
|
80
96
|
const address_1 = map(PersonConversion_composeAddress_Z721C83C5, person.Address);
|
|
81
97
|
const affiliation_1 = map(PersonConversion_composeAffiliation_Z721C83C5, person.Affiliation);
|
|
82
|
-
return LDPerson.create(givenName, unwrap(
|
|
98
|
+
return LDPerson.create(givenName, unwrap(orcid), void 0, unwrap(affiliation_1), unwrap(person.EMail), unwrap(person.LastName), void 0, unwrap(jobTitles), unwrap(person.MidInitials), address_1, unwrap(disambiguatingDescriptions), unwrap(person.Fax), unwrap(person.Phone));
|
|
83
99
|
}
|
|
84
100
|
function PersonConversion_decomposePerson_Z6839B9E8(person, graph, context) {
|
|
85
101
|
const orcid = tryGetOrcidNumber(person.Id);
|
|
@@ -97,4 +113,4 @@ function PersonConversion_decomposePerson_Z6839B9E8(person, graph, context) {
|
|
|
97
113
|
return Person.create(unwrap(orcid), unwrap(LDPerson.tryGetFamilyNameAsString(person, unwrap(context))), LDPerson.getGivenNameAsString(person, unwrap(context)), unwrap(LDPerson.tryGetAdditionalNameAsString(person, unwrap(context))), unwrap(LDPerson.tryGetEmailAsString(person, unwrap(context))), unwrap(LDPerson.tryGetTelephoneAsString(person, unwrap(context))), unwrap(LDPerson.tryGetFaxNumberAsString(person, unwrap(context))), unwrap(address), unwrap(affiliation), roles, comments);
|
|
98
114
|
}
|
|
99
115
|
|
|
100
|
-
export { PersonConversion, PersonConversion_$reflection, PersonConversion_composeAddress_Z721C83C5, PersonConversion_composeAffiliation_Z721C83C5,
|
|
116
|
+
export { PersonConversion, PersonConversion_$reflection, PersonConversion_composeAddress_Z721C83C5, PersonConversion_composeAffiliation_Z721C83C5, PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposeAddress_4E60E31B, PersonConversion_decomposeAffiliation_Z2F770004, PersonConversion_decomposePerson_Z6839B9E8, PersonConversion_get_orcidKey };
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"Run.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Run.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAgB,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAOlE,OAAO,EAAE,QAAQ,EAAgB,MAAM,kBAAkB,CAAC;AAI1D,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AACrE,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AAQvE,OAAO,
|
|
1
|
+
{"version":3,"file":"Run.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Run.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAgB,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAOlE,OAAO,EAAE,QAAQ,EAAgB,MAAM,kBAAkB,CAAC;AAI1D,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AACrE,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AAQvE,OAAO,EAAoB,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAC/D,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAczD,qBAAa,aAAa;;CAGzB;AAED,wBAAgB,yBAAyB,IAAI,QAAQ,CAEpD;AAED;;GAEG;AACH,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,cAAc,GAAG,MAAM,CAGnF;AAED;;GAEG;AACH,wBAAgB,mCAAmC,CAAC,KAAK,EAAE,cAAc,GAAG,OAAO,CAgBlF;AAED;;;;GAIG;AACH,wBAAgB,+CAA+C,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAOrG;AAED,wBAAgB,iDAAiD,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAQvG;AAED,wBAAgB,2CAA2C,CAAC,UAAU,EAAE,qBAAqB,EAAE,aAAa,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAwCnK;AAED,wBAAgB,8CAA8C,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,qBAAqB,CAqB/J;AAED,wBAAgB,0DAA0D,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,EAAE,CAkDjH;AAED,wBAAgB,uDAAuD,CAAC,kBAAkB,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,CAAC,wBAAwB,EAAE,qBAAqB,EAAE,CAAC,CAK9M;AAED,wBAAgB,iCAAiC,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CA+BtF;AAED,wBAAgB,oCAAoC,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAoC9G"}
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@@ -21,7 +21,7 @@ import { LDWorkflowInvocation } from '../ROCrate/LDTypes/WorkflowInvocation.js';
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import { LDLabProcess } from '../ROCrate/LDTypes/LabProcess.js';
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import { ArcRun } from '../Core/ArcTypes.js';
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import { BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composePropertyValueFromOA_ZDED3A0F, BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposePropertyValueToOA_Z2F770004, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
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import {
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+
import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
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import { LDOrganization } from '../ROCrate/LDTypes/Organization.js';
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import { utcNow } from '../../node_modules/@fable-org/fable-library-js/Date.js';
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import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
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@@ -200,7 +200,8 @@ function RunConversion_composeRun_Z8CC08AC(run, fs) {
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const measurementMethod = map(BaseTypes_composeDefinedTerm_ZDED3A0F, run.TechnologyType);
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const measurementTechnique = map(BaseTypes_composeDefinedTerm_ZDED3A0F, run.TechnologyPlatform);
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const variableMeasured = map(BaseTypes_composePropertyValueFromOA_ZDED3A0F, run.MeasurementType);
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const
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const persons = map((i) => i.GetAllPersons(), run.Investigation);
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const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, unwrap(persons)), run.Performers));
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const publisher = LDOrganization.create("DataPLANT");
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const dateCreated = utcNow();
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if (creators != null) {
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"ScholarlyArticle.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ScholarlyArticle.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AASzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAOpD,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAErD,qBAAa,0BAA0B;;CAGtC;AAED,wBAAgB,sCAAsC,IAAI,QAAQ,CAEjE;AAED,wBAAgB,kDAAkD,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,
|
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1
|
+
{"version":3,"file":"ScholarlyArticle.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ScholarlyArticle.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AASzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAOpD,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAErD,qBAAa,0BAA0B;;CAGtC;AAED,wBAAgB,sCAAsC,IAAI,QAAQ,CAEjE;AAED,wBAAgB,kDAAkD,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAezF;AAED,wBAAgB,iDAAiD,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,CAmCrF;AAED,wBAAgB,mDAAmD,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAG7F;AAED,wBAAgB,oDAAoD,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAOhH;AAED,wBAAgB,oDAAoD,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAEnH;AAED,wBAAgB,0DAA0D,CAAC,WAAW,EAAE,WAAW,GAAG,MAAM,CAc3G;AAED,wBAAgB,8DAA8D,CAAC,EAAE,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAa5I"}
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@@ -33,7 +33,8 @@ function ScholarlyArticleConversion_composeAuthor_Z721C83C5(author) {
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|
return matchValue.fields[0];
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|
}
|
|
35
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|
} catch (matchValue_1) {
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-
|
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36
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+
const id = `#Author_${author}`;
|
|
37
|
+
return LDPerson.create(author, void 0, id);
|
|
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|
}
|
|
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|
}
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|
function ScholarlyArticleConversion_splitAuthors_Z721C83C5(a) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"Study.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Study.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAOjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;
|
|
1
|
+
{"version":3,"file":"Study.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Study.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAOjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AACzD,OAAO,EAAE,QAAQ,EAAoB,MAAM,qBAAqB,CAAC;AAWjE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAa9F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAWtH"}
|
|
@@ -1,10 +1,11 @@
|
|
|
1
1
|
import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
|
|
2
|
-
import { bind,
|
|
2
|
+
import { bind, map, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
3
3
|
import { tryFromString, toString } from './DateTime.js';
|
|
4
4
|
import { now } from '../../node_modules/@fable-org/fable-library-js/Date.js';
|
|
5
5
|
import { Option_fromSeq, ResizeArray_map, Option_fromValueWithDefault } from '../Core/Helper/Collections.js';
|
|
6
6
|
import { ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, ScholarlyArticleConversion_decomposeScholarlyArticle_Z6839B9E8 } from './ScholarlyArticle.js';
|
|
7
|
-
import {
|
|
7
|
+
import { ArcStudy } from '../Core/ArcTypes.js';
|
|
8
|
+
import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
|
|
8
9
|
import { ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586 } from './Table.js';
|
|
9
10
|
import { ArcTables } from '../Core/Table/ArcTables.js';
|
|
10
11
|
import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
|
|
@@ -12,7 +13,6 @@ import { Datamap } from '../Core/Datamap.js';
|
|
|
12
13
|
import { AssayConversion_getDataFilesFromProcesses_6BABD1B0 } from './Assay.js';
|
|
13
14
|
import { BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
|
|
14
15
|
import { LDDataset } from '../ROCrate/LDTypes/Dataset.js';
|
|
15
|
-
import { ArcStudy } from '../Core/ArcTypes.js';
|
|
16
16
|
import { ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
|
|
17
17
|
|
|
18
18
|
class StudyConversion {
|
|
@@ -28,7 +28,8 @@ function StudyConversion_composeStudy_ZFE0E38E(study, fs) {
|
|
|
28
28
|
const datePublished = bind(tryFromString, study.PublicReleaseDate);
|
|
29
29
|
const dateModified = now();
|
|
30
30
|
const publications = Option_fromSeq(ResizeArray_map(ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, study.Publications));
|
|
31
|
-
const
|
|
31
|
+
const persons = map((i) => i.GetAllPersons(), study.Investigation);
|
|
32
|
+
const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, unwrap(persons)), study.Contacts));
|
|
32
33
|
const processSequence = Option_fromSeq((collection = ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(new ArcTables(study.Tables), void 0, study.Identifier, unwrap(fs)), Array.from(collection)));
|
|
33
34
|
const fragmentDescriptors = map(DatamapConversion_composeFragmentDescriptors_Z892BFC3, study.Datamap);
|
|
34
35
|
const dataFiles = map((ps) => AssayConversion_getDataFilesFromProcesses_6BABD1B0(ps, unwrap(fragmentDescriptors)), processSequence);
|