@nfdi4plants/arctrl 3.0.0-beta.9 → 3.0.0

package/dist/ts/ts/CWLRunResolver.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"CWLRunResolver.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/CWLRunResolver.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAE,MAAM,sCAAsC,CAAC;AAC9D,OAAO,EAA6C,SAAS,EAAE,MAAM,oCAAoC,CAAC;AAC1G,OAAO,EAA0P,wBAAwB,EAAE,MAAM,4BAA4B,CAAC;AAC9T,OAAO,EAA6D,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAC5H,OAAO,EAAwC,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAK3G,OAAO,EAA2C,sBAAsB,EAAE,MAAM,wBAAwB,CAAC;AACzG,OAAO,EAAyD,SAAS,EAAE,MAAM,oCAAoC,CAAC;AACtH,OAAO,EAAE,sBAAsB,EAAE,MAAM,8BAA8B,CAAC;AACtE,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAEtE;;GAEG;AACH,wBAAgB,OAAO,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAE5C;AAED,qBAAa,kBAAmB,SAAQ,MAAO,YAAW,UAAU,CAAC,kBAAkB,CAAC;IACpF,KAAK,EAAE,SAAS,CAAC,MAAM,EAAE,wBAAwB,CAAC,CAAC;gBACvC,KAAK,EAAE,SAAS,CAAC,MAAM,EAAE,wBAAwB,CAAC;CAIjE;AAED,wBAAgB,8BAA8B,IAAI,QAAQ,CAEzD;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,gBAAgB,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAmBxF;AAED,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,kBAAkB,EAAE,aAAa,EAAE,MAAM,EAAE,EAAE,cAAc,EAAE,wBAAwB,GAAG,IAAI,CAK9I;AAED,wBAAgB,qBAAqB,CAAC,cAAc,EAAE,wBAAwB,GAAG,sBAAsB,CAWtG;AAED;;GAEG;AACH,wBAAgB,wCAAwC,CAAC,gBAAgB,EAAE,MAAM,EAAE,cAAc,EAAE,SAAS,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,kBAAkB,EAAE,QAAQ,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,GAAG,IAAI,CAYhQ;AAED;;GAEG;AACH,wBAAgB,2CAA2C,CAAC,gBAAgB,EAAE,MAAM,EAAE,cAAc,EAAE,SAAS,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,kBAAkB,EAAE,GAAG,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,GAAG,sBAAsB,CAwEhR;AAED;;;;;GAKG;AACH,wBAAgB,8BAA8B,CAAC,gBAAgB,EAAE,MAAM,EAAE,cAAc,EAAE,wBAAwB,EAAE,iBAAiB,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,GAAG,wBAAwB,CAmBpN;AAED;;;GAGG;AACH,wBAAgB,gCAAgC,CAAC,gBAAgB,EAAE,MAAM,EAAE,GAAG,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,wBAAwB,CAAC,CAAC,GAAG,sBAAsB,CAOvM"}

package/dist/ts/ts/CWLRunResolver.js

@@ -0,0 +1,181 @@
+import { normalizePathKey, normalize, resolvePathFromFile } from './FileSystem/Path.js';
+import { Record } from '../node_modules/@fable-org/fable-library-js/Types.js';
+import { FSharpMap__Add, FSharpMap__TryFind, empty } from '../node_modules/@fable-org/fable-library-js/Map.js';
+import { CWLProcessingUnit_$reflection, WorkflowStepRunOps_fromTool, WorkflowStepRunOps_fromOperation, WorkflowStepRunOps_fromExpressionTool, WorkflowStepRunOps_fromWorkflow, CWLProcessingUnit_Workflow, WorkflowStepRunOps_tryGetWorkflow } from './CWL/CWLProcessingUnit.js';
+import { stringHash, getEnumerator, disposeSafe, comparePrimitives } from '../node_modules/@fable-org/fable-library-js/Util.js';
+import { record_type, class_type, string_type } from '../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { isNullOrWhiteSpace, endsWith } from '../node_modules/@fable-org/fable-library-js/String.js';
+import { Array_distinct } from '../node_modules/@fable-org/fable-library-js/Seq2.js';
+import { item, map } from '../node_modules/@fable-org/fable-library-js/Array.js';
+import { WorkflowStepRun_RunString } from './CWL/WorkflowSteps.js';
+import { FSharpSet__Contains, FSharpSet__Add, empty as empty$1 } from '../node_modules/@fable-org/fable-library-js/Set.js';
+import { value } from '../node_modules/@fable-org/fable-library-js/Option.js';
+
+function pathKey(path) {
+  return normalizePathKey(path);
+}
+class RunResolutionState extends Record {
+  constructor(Cache) {
+    super();
+    this.Cache = Cache;
+  }
+}
+function RunResolutionState_$reflection() {
+  return record_type("ARCtrl.CWLRunResolver.RunResolutionState", [], RunResolutionState, () => [["Cache", class_type("Microsoft.FSharp.Collections.FSharpMap`2", [string_type, CWLProcessingUnit_$reflection()])]]);
+}
+function getRunNodeCandidates(workflowFilePath, runPath) {
+  let array;
+  if (isNullOrWhiteSpace(runPath)) {
+    return [];
+  } else {
+    const trimmedRunPath = runPath.trim();
+    if (!endsWith(trimmedRunPath, ".cwl", 5)) {
+      return [];
+    } else {
+      const normalizedRunPath = normalize(trimmedRunPath);
+      const runPathInWorkflowDirectory = resolvePathFromFile(workflowFilePath, trimmedRunPath);
+      return Array_distinct((array = [trimmedRunPath, normalizedRunPath, runPathInWorkflowDirectory, normalize(runPathInWorkflowDirectory)], array.filter((p) => !isNullOrWhiteSpace(p))), {
+        Equals: (x, y) => x === y,
+        GetHashCode: stringHash
+      });
+    }
+  }
+}
+function cacheResolvedProcessingUnit(state, candidateKeys, processingUnit) {
+  for (let idx = 0; idx <= candidateKeys.length - 1; idx++) {
+    const key = item(idx, candidateKeys);
+    state.Cache = FSharpMap__Add(state.Cache, key, processingUnit);
+  }
+}
+function runFromProcessingUnit(processingUnit) {
+  switch (processingUnit.tag) {
+    case /* Workflow */
+    1:
+      return WorkflowStepRunOps_fromWorkflow(processingUnit.fields[0]);
+    case /* ExpressionTool */
+    2:
+      return WorkflowStepRunOps_fromExpressionTool(processingUnit.fields[0]);
+    case /* Operation */
+    3:
+      return WorkflowStepRunOps_fromOperation(processingUnit.fields[0]);
+    default:
+      return WorkflowStepRunOps_fromTool(processingUnit.fields[0]);
+  }
+}
+function resolveWorkflowRunsRecursiveWithResolver(workflowFilePath, activePathKeys, state, workflow, tryResolveRunPath) {
+  let enumerator = getEnumerator(workflow.Steps);
+  try {
+    while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
+      const step = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
+      const resolvedRun = resolveWorkflowStepRunRecursiveWithResolver(workflowFilePath, activePathKeys, state, step.Run, tryResolveRunPath);
+      step.Run = resolvedRun;
+    }
+  } finally {
+    disposeSafe(enumerator);
+  }
+}
+function resolveWorkflowStepRunRecursiveWithResolver(workflowFilePath, activePathKeys, state, run, tryResolveRunPath) {
+  switch (run.tag) {
+    case /* RunWorkflow */
+    2: {
+      const matchValue_2 = WorkflowStepRunOps_tryGetWorkflow(run);
+      if (matchValue_2 == null) {
+        return run;
+      } else {
+        const workflow_1 = value(matchValue_2);
+        resolveWorkflowRunsRecursiveWithResolver(workflowFilePath, activePathKeys, state, workflow_1, tryResolveRunPath);
+        return WorkflowStepRunOps_fromWorkflow(workflow_1);
+      }
+    }
+    case /* RunCommandLineTool */
+    1:
+      return run;
+    case /* RunExpressionTool */
+    3:
+      return run;
+    case /* RunOperation */
+    4:
+      return run;
+    default: {
+      const runPath = run.fields[0];
+      const candidates = getRunNodeCandidates(workflowFilePath, runPath);
+      const candidateKeys = Array_distinct(map(pathKey, candidates), {
+        Equals: (x, y) => x === y,
+        GetHashCode: stringHash
+      });
+      const tryResolveCandidate = (index_mut) => {
+        tryResolveCandidate:
+          while (true) {
+            const index = index_mut;
+            if (index >= candidates.length) {
+              return WorkflowStepRun_RunString(runPath);
+            } else {
+              const candidate = item(index, candidates);
+              const key = pathKey(candidate);
+              if (FSharpSet__Contains(activePathKeys, key)) {
+                index_mut = index + 1;
+                continue tryResolveCandidate;
+              } else {
+                const matchValue = FSharpMap__TryFind(state.Cache, key);
+                if (matchValue == null) {
+                  const matchValue_1 = tryResolveRunPath(candidate);
+                  if (matchValue_1 == null) {
+                    index_mut = index + 1;
+                    continue tryResolveCandidate;
+                  } else if (value(matchValue_1).tag === /* Workflow */
+                  1) {
+                    const workflow = value(matchValue_1).fields[0];
+                    resolveWorkflowRunsRecursiveWithResolver(candidate, FSharpSet__Add(activePathKeys, key), state, workflow, tryResolveRunPath);
+                    const resolved = CWLProcessingUnit_Workflow(workflow);
+                    cacheResolvedProcessingUnit(state, candidateKeys, resolved);
+                    return runFromProcessingUnit(resolved);
+                  } else {
+                    const processingUnit = value(matchValue_1);
+                    cacheResolvedProcessingUnit(state, candidateKeys, processingUnit);
+                    return runFromProcessingUnit(processingUnit);
+                  }
+                } else {
+                  return runFromProcessingUnit(value(matchValue));
+                }
+              }
+            }
+            break;
+          }
+      };
+      return tryResolveCandidate(0);
+    }
+  }
+}
+function resolveRunReferencesFromLookup(workflowFilePath, processingUnit, tryResolveRunPath) {
+  switch (processingUnit.tag) {
+    case /* CommandLineTool */
+    0:
+      return processingUnit;
+    case /* ExpressionTool */
+    2:
+      return processingUnit;
+    case /* Operation */
+    3:
+      return processingUnit;
+    default: {
+      const workflow = processingUnit.fields[0];
+      const state = new RunResolutionState(empty({
+        Compare: comparePrimitives
+      }));
+      resolveWorkflowRunsRecursiveWithResolver(workflowFilePath, empty$1({
+        Compare: comparePrimitives
+      }), state, workflow, tryResolveRunPath);
+      return CWLProcessingUnit_Workflow(workflow);
+    }
+  }
+}
+function resolveWorkflowStepRunFromLookup(workflowFilePath, run, tryResolveRunPath) {
+  const state = new RunResolutionState(empty({
+    Compare: comparePrimitives
+  }));
+  return resolveWorkflowStepRunRecursiveWithResolver(workflowFilePath, empty$1({
+    Compare: comparePrimitives
+  }), state, run, tryResolveRunPath);
+}
+
+export { RunResolutionState, RunResolutionState_$reflection, cacheResolvedProcessingUnit, getRunNodeCandidates, pathKey, resolveRunReferencesFromLookup, resolveWorkflowRunsRecursiveWithResolver, resolveWorkflowStepRunFromLookup, resolveWorkflowStepRunRecursiveWithResolver, runFromProcessingUnit };

package/dist/ts/ts/Contract/ARC.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAEA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAQzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAoDzE"}
+{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAEA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAQzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAyEzE"}

package/dist/ts/ts/Contract/ARC.js

@@ -4,8 +4,8 @@ import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js'
 import { Contract } from './Contract.js';
 import { $007CAssayPath$007C_$007C } from './ArcAssay.js';
 import { $007CStudyPath$007C_$007C } from './ArcStudy.js';
-import { $007CWorkflowPath$007C_$007C } from './ArcWorkflow.js';
-import { $007CRunPath$007C_$007C } from './ArcRun.js';
+import { $007CWorkflowPath$007C_$007C, $007CWorkflowCWLPath$007C_$007C } from './ArcWorkflow.js';
+import { $007CRunPath$007C_$007C, $007CRunCWLPath$007C_$007C, $007CRunYMLPath$007C_$007C } from './ArcRun.js';
 import { $007CDatamapPath$007C_$007C } from './Datamap.js';
 import { LicenseContractExtensions_$007CLicensePath$007C_$007C } from './License.js';
 
@@ -31,22 +31,40 @@ function tryISAReadContractFromPath(path) {
           const p_3 = value(activePatternResult_3);
           return Contract.createRead(p_3, "ISA_Workflow");
         } else {
-          const activePatternResult_4 = $007CRunPath$007C_$007C(split$1);
+          const activePatternResult_4 = $007CWorkflowCWLPath$007C_$007C(split$1);
           if (activePatternResult_4 != null) {
             const p_4 = value(activePatternResult_4);
-            return Contract.createRead(p_4, "ISA_Run");
+            return Contract.createRead(p_4, "CWL");
           } else {
-            const activePatternResult_5 = $007CDatamapPath$007C_$007C(split$1);
+            const activePatternResult_5 = $007CRunPath$007C_$007C(split$1);
             if (activePatternResult_5 != null) {
               const p_5 = value(activePatternResult_5);
-              return Contract.createRead(p_5, "ISA_Datamap");
+              return Contract.createRead(p_5, "ISA_Run");
             } else {
-              const activePatternResult_6 = LicenseContractExtensions_$007CLicensePath$007C_$007C(split$1);
+              const activePatternResult_6 = $007CRunCWLPath$007C_$007C(split$1);
               if (activePatternResult_6 != null) {
                 const p_6 = value(activePatternResult_6);
-                return Contract.createRead(p_6, "PlainText");
+                return Contract.createRead(p_6, "CWL");
               } else {
-                return void 0;
+                const activePatternResult_7 = $007CRunYMLPath$007C_$007C(split$1);
+                if (activePatternResult_7 != null) {
+                  const p_7 = value(activePatternResult_7);
+                  return Contract.createRead(p_7, "YAML");
+                } else {
+                  const activePatternResult_8 = $007CDatamapPath$007C_$007C(split$1);
+                  if (activePatternResult_8 != null) {
+                    const p_8 = value(activePatternResult_8);
+                    return Contract.createRead(p_8, "ISA_Datamap");
+                  } else {
+                    const activePatternResult_9 = LicenseContractExtensions_$007CLicensePath$007C_$007C(split$1);
+                    if (activePatternResult_9 != null) {
+                      const p_9 = value(activePatternResult_9);
+                      return Contract.createRead(p_9, "PlainText");
+                    } else {
+                      return void 0;
+                    }
+                  }
+                }
               }
             }
           }

package/dist/ts/ts/Contract/ArcRun.d.ts

@@ -1,7 +1,11 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { Contract } from './Contract.js';
 import { ArcRun } from '../Core/ArcTypes.js';
+import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.js';
+import { CWLParameterReference } from '../CWL/ParameterReference.js';
 export declare function $007CRunPath$007C_$007C(input: string[]): Option<string>;
+export declare function $007CRunCWLPath$007C_$007C(input: string[]): Option<string>;
+export declare function $007CRunYMLPath$007C_$007C(input: string[]): Option<string>;
 export declare function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$: ArcRun, WithFolder: Option<boolean>): Contract[];
 export declare function ARCtrl_ArcRun__ArcRun_ToUpdateContract(this$: ArcRun): Contract;
 export declare function ARCtrl_ArcRun__ArcRun_ToDeleteContract(this$: ArcRun): Contract;
@@ -9,4 +13,6 @@ export declare function ARCtrl_ArcRun__ArcRun_toDeleteContract_Static_Z3EFAF6F8(
 export declare function ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF(run: ArcRun, WithFolder?: boolean): Contract[];
 export declare function ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8(run: ArcRun): Contract;
 export declare function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcRun>;
+export declare function ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static(runIdentifier: string, c: Contract): Option<CWLProcessingUnit_$union>;
+export declare function ARCtrl_ArcRun__ArcRun_tryYMLFromReadContract_Static(runIdentifier: string, c: Contract): Option<CWLParameterReference[]>;
 //# sourceMappingURL=ArcRun.d.ts.map

package/dist/ts/ts/Contract/ArcRun.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcRun.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcRun.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAG7C,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BvE;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQtH;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAErH;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,yDAAyD,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,CA8BrG"}
+{"version":3,"file":"ArcRun.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcRun.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAKzC,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAG7C,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AACvE,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAErE,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BvE;AAED,wBAAgB,0BAA0B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B1E;AAED,wBAAgB,0BAA0B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B1E;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAWtH;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAErH;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,yDAAyD,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,CA8BrG;AAED,wBAAgB,mDAAmD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,wBAAwB,CAAC,CA0CxI;AAED,wBAAgB,mDAAmD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,qBAAqB,EAAE,CAAC,CA0CvI"}

package/dist/ts/ts/Contract/ArcRun.js

@@ -1,12 +1,14 @@
 import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
 import { combineMany, getRunFolderPath } from '../FileSystem/Path.js';
 import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
-import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
-import { Run_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
+import { defaultArg, value, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Run_fileNameFromIdentifier, Run_cwlFileNameFromIdentifier, Run_ymlFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcRun.js';
 import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+import { encodeProcessingUnit } from '../CWL/Encode.js';
+import { Decode_decodeCWLProcessingUnit, DecodeParameters_decodeYAMLParameterFile } from '../CWL/Decode.js';
 
 function $007CRunPath$007C_$007C(input) {
   let matchResult;
@@ -32,13 +34,64 @@ function $007CRunPath$007C_$007C(input) {
       return void 0;
   }
 }
+function $007CRunCWLPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "runs") {
+      if (item(2, input) === "run.cwl") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      const anyRunName = item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
+function $007CRunYMLPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "runs") {
+      if (item(2, input) === "run.yml") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      const anyRunName = item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
 function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$, WithFolder) {
   const withFolder = defaultArg(WithFolder, false);
   const path = Run_fileNameFromIdentifier(this$.Identifier);
   const c = Contract.createCreate(path, "ISA_Run", ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(this$));
   return toArray(delay(() => {
     let folderFS;
-    return append(withFolder ? (folderFS = FileSystemTree.createRunsFolder([FileSystemTree.createRunFolder(this$.Identifier)]), collect((p) => p !== path && p !== "runs/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+    return append(withFolder ? (folderFS = FileSystemTree.createRunsFolder([FileSystemTree.createRunFolder(this$.Identifier)]), collect((p) => p !== path && p !== "runs/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => {
+      let path_1, dto;
+      return append(this$.CWLDescription != null ? (path_1 = Run_cwlFileNameFromIdentifier(this$.Identifier), dto = encodeProcessingUnit(value(this$.CWLDescription)), singleton(Contract.createCreate(path_1, "CWL", dto))) : empty(), delay(() => singleton(c)));
+    }));
   }));
 }
 function ARCtrl_ArcRun__ArcRun_ToUpdateContract(this$) {
@@ -85,5 +138,79 @@ function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c) {
       return void 0;
   }
 }
+function ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static(runIdentifier, c) {
+  let text;
+  const p = Run_cwlFileNameFromIdentifier(runIdentifier);
+  let matchResult, text_1;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "CWL") {
+        if (c.DTO != null) {
+          if (typeof value(c.DTO) === "string") {
+            if (text = value(c.DTO), c.Path === p) {
+              matchResult = 0;
+              text_1 = value(c.DTO);
+            } else {
+              matchResult = 1;
+            }
+          } else {
+            matchResult = 1;
+          }
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return Decode_decodeCWLProcessingUnit(text_1);
+    default:
+      return void 0;
+  }
+}
+function ARCtrl_ArcRun__ArcRun_tryYMLFromReadContract_Static(runIdentifier, c) {
+  let text;
+  const p = Run_ymlFileNameFromIdentifier(runIdentifier);
+  let matchResult, text_1;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "YAML") {
+        if (c.DTO != null) {
+          if (typeof value(c.DTO) === "string") {
+            if (text = value(c.DTO), c.Path === p) {
+              matchResult = 0;
+              text_1 = value(c.DTO);
+            } else {
+              matchResult = 1;
+            }
+          } else {
+            matchResult = 1;
+          }
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return DecodeParameters_decodeYAMLParameterFile(text_1);
+    default:
+      return void 0;
+  }
+}
 
-export { $007CRunPath$007C_$007C, ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToDeleteContract, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF, ARCtrl_ArcRun__ArcRun_toDeleteContract_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F };
+export { $007CRunCWLPath$007C_$007C, $007CRunPath$007C_$007C, $007CRunYMLPath$007C_$007C, ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToDeleteContract, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF, ARCtrl_ArcRun__ArcRun_toDeleteContract_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F, ARCtrl_ArcRun__ArcRun_tryYMLFromReadContract_Static };

package/dist/ts/ts/Contract/ArcWorkflow.d.ts

@@ -1,7 +1,9 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { Contract } from './Contract.js';
 import { ArcWorkflow } from '../Core/ArcTypes.js';
+import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.js';
 export declare function $007CWorkflowPath$007C_$007C(input: string[]): Option<string>;
+export declare function $007CWorkflowCWLPath$007C_$007C(input: string[]): Option<string>;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$: ArcWorkflow, WithFolder: Option<boolean>): Contract[];
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$: ArcWorkflow): Contract;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract(this$: ArcWorkflow): Contract;
@@ -9,4 +11,5 @@ export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B(workflow: ArcWorkflow, WithFolder?: boolean): Contract[];
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toUpdateContract_Static_Z1C75CB0E(workflow: ArcWorkflow): Contract;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcWorkflow>;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static(workflowIdentifier: string, c: Contract): Option<CWLProcessingUnit_$union>;
 //# sourceMappingURL=ArcWorkflow.d.ts.map

package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcWorkflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcWorkflow.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAGlD,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B5E;AAED,wBAAgB,yDAAyD,CAAC,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQrI;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAExI;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,CA8BpH"}
+{"version":3,"file":"ArcWorkflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcWorkflow.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAKzC,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAGlD,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AAEvE,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B5E;AAED,wBAAgB,+BAA+B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B/E;AAED,wBAAgB,yDAAyD,CAAC,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAWrI;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAExI;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,CA8BpH;AAED,wBAAgB,6DAA6D,CAAC,kBAAkB,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,wBAAwB,CAAC,CA0CvJ"}

package/dist/ts/ts/Contract/ArcWorkflow.js

@@ -1,12 +1,14 @@
 import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
 import { combineMany, getWorkflowFolderPath } from '../FileSystem/Path.js';
 import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
-import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
-import { Workflow_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
+import { defaultArg, value, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Workflow_fileNameFromIdentifier, Workflow_cwlFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcWorkflow.js';
 import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+import { encodeProcessingUnit } from '../CWL/Encode.js';
+import { Decode_decodeCWLProcessingUnit } from '../CWL/Decode.js';
 
 function $007CWorkflowPath$007C_$007C(input) {
   let matchResult;
@@ -32,13 +34,40 @@ function $007CWorkflowPath$007C_$007C(input) {
       return void 0;
   }
 }
+function $007CWorkflowCWLPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "workflows") {
+      if (item(2, input) === "workflow.cwl") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      const anyWorkflowName = item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$, WithFolder) {
   const withFolder = defaultArg(WithFolder, false);
   const path = Workflow_fileNameFromIdentifier(this$.Identifier);
   const c = Contract.createCreate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
   return toArray(delay(() => {
     let folderFS;
-    return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(this$.Identifier)]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+    return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(this$.Identifier)]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => {
+      let path_1, dto;
+      return append(this$.CWLDescription != null ? (path_1 = Workflow_cwlFileNameFromIdentifier(this$.Identifier), dto = encodeProcessingUnit(value(this$.CWLDescription)), singleton(Contract.createCreate(path_1, "CWL", dto))) : empty(), delay(() => singleton(c)));
+    }));
   }));
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$) {
@@ -85,5 +114,42 @@ function ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F(c)
       return void 0;
   }
 }
+function ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static(workflowIdentifier, c) {
+  let cwl;
+  const p = Workflow_cwlFileNameFromIdentifier(workflowIdentifier);
+  let matchResult, cwl_1;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "CWL") {
+        if (c.DTO != null) {
+          if (typeof value(c.DTO) === "string") {
+            if (cwl = value(c.DTO), c.Path === p) {
+              matchResult = 0;
+              cwl_1 = value(c.DTO);
+            } else {
+              matchResult = 1;
+            }
+          } else {
+            matchResult = 1;
+          }
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return Decode_decodeCWLProcessingUnit(cwl_1);
+    default:
+      return void 0;
+  }
+}
 
-export { $007CWorkflowPath$007C_$007C, ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B, ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_toUpdateContract_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F };
+export { $007CWorkflowCWLPath$007C_$007C, $007CWorkflowPath$007C_$007C, ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B, ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_toUpdateContract_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F };

package/dist/ts/ts/Contract/Datamap.d.ts

@@ -1,29 +1,29 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { Contract } from './Contract.js';
-import { DataMap } from '../Core/DataMap.js';
+import { Datamap } from '../Core/Datamap.js';
 export declare function $007CDatamapPath$007C_$007C(input: string[]): Option<string>;
-export declare function ARCtrl_DataMap__DataMap_ToCreateContractForAssay_Z721C83C5(this$: DataMap, assayIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5(this$: DataMap, assayIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_ToDeleteContractForAssay_Z721C83C5(this$: DataMap, assayIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_toDeleteContractForAssay_Static_Z721C83C5(assayIdentifier: string): ((arg0: DataMap) => Contract);
-export declare function ARCtrl_DataMap__DataMap_toUpdateContractForAssay_Static_Z721C83C5(assayIdentifier: string): ((arg0: DataMap) => Contract);
-export declare function ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static(assayIdentifier: string, c: Contract): Option<DataMap>;
-export declare function ARCtrl_DataMap__DataMap_ToCreateContractForStudy_Z721C83C5(this$: DataMap, studyIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5(this$: DataMap, studyIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_ToDeleteContractForStudy_Z721C83C5(this$: DataMap, studyIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_toDeleteContractForStudy_Static_Z721C83C5(studyIdentifier: string): ((arg0: DataMap) => Contract);
-export declare function ARCtrl_DataMap__DataMap_toUpdateContractForStudy_Static_Z721C83C5(studyIdentifier: string): ((arg0: DataMap) => Contract);
-export declare function ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static(studyIdentifier: string, c: Contract): Option<DataMap>;
-export declare function ARCtrl_DataMap__DataMap_ToCreateContractForWorkflow_Z721C83C5(this$: DataMap, workflowIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5(this$: DataMap, workflowIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_ToDeleteContractForWorkflow_Z721C83C5(this$: DataMap, workflowIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_toDeleteContractForWorkflow_Static_Z721C83C5(workflowIdentifier: string): ((arg0: DataMap) => Contract);
-export declare function ARCtrl_DataMap__DataMap_toUpdateContractForWorkflow_Static_Z721C83C5(workflowIdentifier: string): ((arg0: DataMap) => Contract);
-export declare function ARCtrl_DataMap__DataMap_tryFromReadContractForWorkflow_Static(workflowIdentifier: string, c: Contract): Option<DataMap>;
-export declare function ARCtrl_DataMap__DataMap_ToCreateContractForRun_Z721C83C5(this$: DataMap, runIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_ToUpdateContractForRun_Z721C83C5(this$: DataMap, runIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_ToDeleteContractForRun_Z721C83C5(this$: DataMap, runIdentifier: string): Contract;
-export declare function ARCtrl_DataMap__DataMap_toDeleteContractForRun_Static_Z721C83C5(runIdentifier: string): ((arg0: DataMap) => Contract);
-export declare function ARCtrl_DataMap__DataMap_toUpdateContractForRun_Static_Z721C83C5(runIdentifier: string): ((arg0: DataMap) => Contract);
-export declare function ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static(runIdentifier: string, c: Contract): Option<DataMap>;
+export declare function ARCtrl_Datamap__Datamap_ToCreateContractForAssay_Z721C83C5(this$: Datamap, assayIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_ToUpdateContractForAssay_Z721C83C5(this$: Datamap, assayIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_ToDeleteContractForAssay_Z721C83C5(this$: Datamap, assayIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_toDeleteContractForAssay_Static_Z721C83C5(assayIdentifier: string): ((arg0: Datamap) => Contract);
+export declare function ARCtrl_Datamap__Datamap_toUpdateContractForAssay_Static_Z721C83C5(assayIdentifier: string): ((arg0: Datamap) => Contract);
+export declare function ARCtrl_Datamap__Datamap_tryFromReadContractForAssay_Static(assayIdentifier: string, c: Contract): Option<Datamap>;
+export declare function ARCtrl_Datamap__Datamap_ToCreateContractForStudy_Z721C83C5(this$: Datamap, studyIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_ToUpdateContractForStudy_Z721C83C5(this$: Datamap, studyIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_ToDeleteContractForStudy_Z721C83C5(this$: Datamap, studyIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_toDeleteContractForStudy_Static_Z721C83C5(studyIdentifier: string): ((arg0: Datamap) => Contract);
+export declare function ARCtrl_Datamap__Datamap_toUpdateContractForStudy_Static_Z721C83C5(studyIdentifier: string): ((arg0: Datamap) => Contract);
+export declare function ARCtrl_Datamap__Datamap_tryFromReadContractForStudy_Static(studyIdentifier: string, c: Contract): Option<Datamap>;
+export declare function ARCtrl_Datamap__Datamap_ToCreateContractForWorkflow_Z721C83C5(this$: Datamap, workflowIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_ToUpdateContractForWorkflow_Z721C83C5(this$: Datamap, workflowIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_ToDeleteContractForWorkflow_Z721C83C5(this$: Datamap, workflowIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_toDeleteContractForWorkflow_Static_Z721C83C5(workflowIdentifier: string): ((arg0: Datamap) => Contract);
+export declare function ARCtrl_Datamap__Datamap_toUpdateContractForWorkflow_Static_Z721C83C5(workflowIdentifier: string): ((arg0: Datamap) => Contract);
+export declare function ARCtrl_Datamap__Datamap_tryFromReadContractForWorkflow_Static(workflowIdentifier: string, c: Contract): Option<Datamap>;
+export declare function ARCtrl_Datamap__Datamap_ToCreateContractForRun_Z721C83C5(this$: Datamap, runIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_ToUpdateContractForRun_Z721C83C5(this$: Datamap, runIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_ToDeleteContractForRun_Z721C83C5(this$: Datamap, runIdentifier: string): Contract;
+export declare function ARCtrl_Datamap__Datamap_toDeleteContractForRun_Static_Z721C83C5(runIdentifier: string): ((arg0: Datamap) => Contract);
+export declare function ARCtrl_Datamap__Datamap_toUpdateContractForRun_Static_Z721C83C5(runIdentifier: string): ((arg0: Datamap) => Contract);
+export declare function ARCtrl_Datamap__Datamap_tryFromReadContractForRun_Static(runIdentifier: string, c: Contract): Option<Datamap>;
 //# sourceMappingURL=Datamap.d.ts.map