@nfdi4plants/arctrl 3.0.0-beta.9 → 3.0.0

package/dist/ts/ts/CWL/WorkflowDescription.js

@@ -0,0 +1,142 @@
+import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
+
+class CWLWorkflowDescription extends DynamicObj {
+  constructor(steps, inputs, outputs, cwlVersion, requirements, hints, intent, metadata, label, doc) {
+    super();
+    this._cwlVersion = defaultArg(cwlVersion, "v1.2");
+    this._steps = steps;
+    this._inputs = inputs;
+    this._outputs = outputs;
+    this._requirements = requirements;
+    this._hints = hints;
+    this._intent = intent;
+    this._metadata = metadata;
+    this._label = label;
+    this._doc = doc;
+  }
+  get CWLVersion() {
+    const this$ = this;
+    return this$._cwlVersion;
+  }
+  set CWLVersion(version) {
+    const this$ = this;
+    this$._cwlVersion = version;
+  }
+  get Steps() {
+    const this$ = this;
+    return this$._steps;
+  }
+  set Steps(steps) {
+    const this$ = this;
+    this$._steps = steps;
+  }
+  get Inputs() {
+    const this$ = this;
+    return this$._inputs;
+  }
+  set Inputs(inputs) {
+    const this$ = this;
+    this$._inputs = inputs;
+  }
+  get Outputs() {
+    const this$ = this;
+    return this$._outputs;
+  }
+  set Outputs(outputs) {
+    const this$ = this;
+    this$._outputs = outputs;
+  }
+  get Requirements() {
+    const this$ = this;
+    return unwrap(this$._requirements);
+  }
+  set Requirements(requirements) {
+    const this$ = this;
+    this$._requirements = requirements;
+  }
+  get Hints() {
+    const this$ = this;
+    return unwrap(this$._hints);
+  }
+  set Hints(hints) {
+    const this$ = this;
+    this$._hints = hints;
+  }
+  get Intent() {
+    const this$ = this;
+    return unwrap(this$._intent);
+  }
+  set Intent(intent) {
+    const this$ = this;
+    this$._intent = intent;
+  }
+  get Metadata() {
+    const this$ = this;
+    return unwrap(this$._metadata);
+  }
+  set Metadata(metadata) {
+    const this$ = this;
+    this$._metadata = metadata;
+  }
+  get Label() {
+    const this$ = this;
+    return unwrap(this$._label);
+  }
+  set Label(label) {
+    const this$ = this;
+    this$._label = label;
+  }
+  get Doc() {
+    const this$ = this;
+    return unwrap(this$._doc);
+  }
+  set Doc(doc) {
+    const this$ = this;
+    this$._doc = doc;
+  }
+  static getInputs(workflow) {
+    return workflow.Inputs;
+  }
+  static getOutputs(workflow) {
+    return workflow.Outputs;
+  }
+  static getRequirementsOrEmpty(workflow) {
+    return defaultArg(workflow.Requirements, []);
+  }
+  static getHintsOrEmpty(workflow) {
+    return defaultArg(workflow.Hints, []);
+  }
+  static getIntentOrEmpty(workflow) {
+    return defaultArg(workflow.Intent, []);
+  }
+  static getOrCreateHints(workflow) {
+    const matchValue = workflow.Hints;
+    if (matchValue == null) {
+      const hints_1 = [];
+      workflow.Hints = hints_1;
+      return hints_1;
+    } else {
+      return value(matchValue);
+    }
+  }
+  static getOrCreateIntent(workflow) {
+    const matchValue = workflow.Intent;
+    if (matchValue == null) {
+      const intent_1 = [];
+      workflow.Intent = intent_1;
+      return intent_1;
+    } else {
+      return value(matchValue);
+    }
+  }
+}
+function CWLWorkflowDescription_$reflection() {
+  return class_type("ARCtrl.CWL.CWLWorkflowDescription", void 0, CWLWorkflowDescription, DynamicObj_$reflection());
+}
+function CWLWorkflowDescription_$ctor_Z5554389(steps, inputs, outputs, cwlVersion, requirements, hints, intent, metadata, label, doc) {
+  return new CWLWorkflowDescription(steps, inputs, outputs, cwlVersion, requirements, hints, intent, metadata, label, doc);
+}
+
+export { CWLWorkflowDescription, CWLWorkflowDescription_$ctor_Z5554389, CWLWorkflowDescription_$reflection };

package/dist/ts/ts/CWL/WorkflowSteps.d.ts

@@ -0,0 +1,160 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Record, Union } from '@fable-org/fable-library-js/Types.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { YAMLElement_$union } from '../fable_modules/YAMLicious.1.0.0-alpha.3/YAMLiciousTypes.fs.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { IComparable, IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { HintEntry_$union, Requirement_$union } from './Requirements.js';
+import { DynamicObj } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+export type LinkMergeMethod_$union = LinkMergeMethod<0> | LinkMergeMethod<1>;
+export type LinkMergeMethod_$cases = {
+    0: ["MergeNested", []];
+    1: ["MergeFlattened", []];
+};
+export declare function LinkMergeMethod_MergeNested(): LinkMergeMethod<0>;
+export declare function LinkMergeMethod_MergeFlattened(): LinkMergeMethod<1>;
+export declare class LinkMergeMethod<Tag extends keyof LinkMergeMethod_$cases> extends Union<Tag, LinkMergeMethod_$cases[Tag][0]> {
+    readonly tag: Tag;
+    readonly fields: LinkMergeMethod_$cases[Tag][1];
+    constructor(tag: Tag, fields: LinkMergeMethod_$cases[Tag][1]);
+    cases(): string[];
+    get AsCwlString(): string;
+    static tryParse(value: string): Option<LinkMergeMethod_$union>;
+}
+export declare function LinkMergeMethod_$reflection(): TypeInfo;
+export type PickValueMethod_$union = PickValueMethod<0> | PickValueMethod<1> | PickValueMethod<2>;
+export type PickValueMethod_$cases = {
+    0: ["FirstNonNull", []];
+    1: ["TheOnlyNonNull", []];
+    2: ["AllNonNull", []];
+};
+export declare function PickValueMethod_FirstNonNull(): PickValueMethod<0>;
+export declare function PickValueMethod_TheOnlyNonNull(): PickValueMethod<1>;
+export declare function PickValueMethod_AllNonNull(): PickValueMethod<2>;
+export declare class PickValueMethod<Tag extends keyof PickValueMethod_$cases> extends Union<Tag, PickValueMethod_$cases[Tag][0]> {
+    readonly tag: Tag;
+    readonly fields: PickValueMethod_$cases[Tag][1];
+    constructor(tag: Tag, fields: PickValueMethod_$cases[Tag][1]);
+    cases(): string[];
+    get AsCwlString(): string;
+    static tryParse(value: string): Option<PickValueMethod_$union>;
+}
+export declare function PickValueMethod_$reflection(): TypeInfo;
+export type ScatterMethod_$union = ScatterMethod<0> | ScatterMethod<1> | ScatterMethod<2>;
+export type ScatterMethod_$cases = {
+    0: ["DotProduct", []];
+    1: ["NestedCrossProduct", []];
+    2: ["FlatCrossProduct", []];
+};
+export declare function ScatterMethod_DotProduct(): ScatterMethod<0>;
+export declare function ScatterMethod_NestedCrossProduct(): ScatterMethod<1>;
+export declare function ScatterMethod_FlatCrossProduct(): ScatterMethod<2>;
+export declare class ScatterMethod<Tag extends keyof ScatterMethod_$cases> extends Union<Tag, ScatterMethod_$cases[Tag][0]> {
+    readonly tag: Tag;
+    readonly fields: ScatterMethod_$cases[Tag][1];
+    constructor(tag: Tag, fields: ScatterMethod_$cases[Tag][1]);
+    cases(): string[];
+    get AsCwlString(): string;
+    static tryParse(value: string): Option<ScatterMethod_$union>;
+}
+export declare function ScatterMethod_$reflection(): TypeInfo;
+export declare class StepInput extends Record implements IEquatable<StepInput> {
+    readonly Id: string;
+    readonly Source: Option<string[]>;
+    readonly DefaultValue: Option<YAMLElement_$union>;
+    readonly ValueFrom: Option<string>;
+    readonly LinkMerge: Option<LinkMergeMethod_$union>;
+    readonly PickValue: Option<PickValueMethod_$union>;
+    readonly Doc: Option<string>;
+    readonly LoadContents: Option<boolean>;
+    readonly LoadListing: Option<string>;
+    readonly Label: Option<string>;
+    constructor(Id: string, Source: Option<string[]>, DefaultValue: Option<YAMLElement_$union>, ValueFrom: Option<string>, LinkMerge: Option<LinkMergeMethod_$union>, PickValue: Option<PickValueMethod_$union>, Doc: Option<string>, LoadContents: Option<boolean>, LoadListing: Option<string>, Label: Option<string>);
+    static create(id: string, source?: string[], defaultValue?: YAMLElement_$union, valueFrom?: string, linkMerge?: LinkMergeMethod_$union, pickValue?: PickValueMethod_$union, doc?: string, loadContents?: boolean, loadListing?: string, label?: string): StepInput;
+    static updateAt(index: int32, f: ((arg0: StepInput) => StepInput), inputs: StepInput[]): void;
+}
+export declare function StepInput_$reflection(): TypeInfo;
+export declare class StepOutputParameter extends Record implements IEquatable<StepOutputParameter>, IComparable<StepOutputParameter> {
+    readonly Id: string;
+    constructor(Id: string);
+    static create(id: string): StepOutputParameter;
+}
+export declare function StepOutputParameter_$reflection(): TypeInfo;
+export type StepOutput_$union = StepOutput<0> | StepOutput<1>;
+export type StepOutput_$cases = {
+    0: ["StepOutputString", [string]];
+    1: ["StepOutputRecord", [StepOutputParameter]];
+};
+export declare function StepOutput_StepOutputString(Item: string): StepOutput<0>;
+export declare function StepOutput_StepOutputRecord(Item: StepOutputParameter): StepOutput<1>;
+export declare class StepOutput<Tag extends keyof StepOutput_$cases> extends Union<Tag, StepOutput_$cases[Tag][0]> {
+    readonly tag: Tag;
+    readonly fields: StepOutput_$cases[Tag][1];
+    constructor(tag: Tag, fields: StepOutput_$cases[Tag][1]);
+    cases(): string[];
+}
+export declare function StepOutput_$reflection(): TypeInfo;
+export type WorkflowStepRun_$union = WorkflowStepRun<0> | WorkflowStepRun<1> | WorkflowStepRun<2> | WorkflowStepRun<3> | WorkflowStepRun<4>;
+export type WorkflowStepRun_$cases = {
+    0: ["RunString", [string]];
+    1: ["RunCommandLineTool", [any]];
+    2: ["RunWorkflow", [any]];
+    3: ["RunExpressionTool", [any]];
+    4: ["RunOperation", [any]];
+};
+export declare function WorkflowStepRun_RunString(Item: string): WorkflowStepRun<0>;
+export declare function WorkflowStepRun_RunCommandLineTool(Item: any): WorkflowStepRun<1>;
+export declare function WorkflowStepRun_RunWorkflow(Item: any): WorkflowStepRun<2>;
+export declare function WorkflowStepRun_RunExpressionTool(Item: any): WorkflowStepRun<3>;
+export declare function WorkflowStepRun_RunOperation(Item: any): WorkflowStepRun<4>;
+export declare class WorkflowStepRun<Tag extends keyof WorkflowStepRun_$cases> extends Union<Tag, WorkflowStepRun_$cases[Tag][0]> {
+    readonly tag: Tag;
+    readonly fields: WorkflowStepRun_$cases[Tag][1];
+    constructor(tag: Tag, fields: WorkflowStepRun_$cases[Tag][1]);
+    cases(): string[];
+}
+export declare function WorkflowStepRun_$reflection(): TypeInfo;
+export declare class WorkflowStep extends DynamicObj {
+    _id: string;
+    _in: StepInput[];
+    _out: StepOutput_$union[];
+    _run: WorkflowStepRun_$union;
+    _label: Option<string>;
+    _doc: Option<string>;
+    _scatter: Option<string[]>;
+    _scatterMethod: Option<ScatterMethod_$union>;
+    _when: Option<string>;
+    _requirements: Option<Requirement_$union[]>;
+    _hints: Option<HintEntry_$union[]>;
+    constructor(id: string, in_: StepInput[], out_: StepOutput_$union[], run: WorkflowStepRun_$union, label?: string, doc?: string, scatter?: string[], scatterMethod?: ScatterMethod_$union, when_?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[]);
+    get Id(): string;
+    set Id(id: string);
+    get In(): StepInput[];
+    set In(in_: StepInput[]);
+    get Out(): StepOutput_$union[];
+    set Out(out_: StepOutput_$union[]);
+    get Run(): WorkflowStepRun_$union;
+    set Run(run: WorkflowStepRun_$union);
+    get Label(): string | undefined;
+    set Label(label: Option<string>);
+    get Doc(): string | undefined;
+    set Doc(doc: Option<string>);
+    get Scatter(): string[] | undefined;
+    set Scatter(scatter: Option<string[]>);
+    get ScatterMethod(): ScatterMethod_$union | undefined;
+    set ScatterMethod(scatterMethod: Option<ScatterMethod_$union>);
+    get When_(): string | undefined;
+    set When_(when_: Option<string>);
+    get Requirements(): Requirement_$union[] | undefined;
+    set Requirements(requirements: Option<Requirement_$union[]>);
+    get Hints(): HintEntry_$union[] | undefined;
+    set Hints(hints: Option<HintEntry_$union[]>);
+    static fromRunPath(id: string, in_: StepInput[], out_: StepOutput_$union[], runPath: string, label?: string, doc?: string, scatter?: string[], scatterMethod?: ScatterMethod_$union, when_?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[]): WorkflowStep;
+    static updateInputAt(index: int32, f: ((arg0: StepInput) => StepInput), step: WorkflowStep): void;
+    static addInput(input: StepInput, step: WorkflowStep): void;
+    static removeInputsById(id: string, step: WorkflowStep): void;
+    static updateInputById(id: string, f: ((arg0: StepInput) => StepInput), step: WorkflowStep): void;
+}
+export declare function WorkflowStep_$reflection(): TypeInfo;
+export declare function WorkflowStep_$ctor_Z76380C57(id: string, in_: StepInput[], out_: StepOutput_$union[], run: WorkflowStepRun_$union, label?: string, doc?: string, scatter?: string[], scatterMethod?: ScatterMethod_$union, when_?: string, requirements?: Requirement_$union[], hints?: HintEntry_$union[]): WorkflowStep;
+//# sourceMappingURL=WorkflowSteps.d.ts.map

package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/CWL/WorkflowSteps.js

@@ -0,0 +1,317 @@
+import { unwrap, toArray } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Union, Record } from '../../node_modules/@fable-org/fable-library-js/Types.js';
+import { union_type, record_type, string_type, option_type, array_type, bool_type, obj_type, class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { YAMLElement_$reflection } from '../fable_modules/YAMLicious.1.0.0-alpha.3/YAMLiciousTypes.fs.js';
+import { setItem } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { filter, iterate, tryFindIndex } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+
+function LinkMergeMethod_MergeNested() {
+  return new LinkMergeMethod(0, []);
+}
+function LinkMergeMethod_MergeFlattened() {
+  return new LinkMergeMethod(1, []);
+}
+class LinkMergeMethod extends Union {
+  constructor(tag, fields) {
+    super();
+    this.tag = tag;
+    this.fields = fields;
+  }
+  cases() {
+    return ["MergeNested", "MergeFlattened"];
+  }
+  get AsCwlString() {
+    const this$ = this;
+    return this$.tag === /* MergeFlattened */
+    1 ? "merge_flattened" : "merge_nested";
+  }
+  static tryParse(value) {
+    return value === "merge_nested" ? LinkMergeMethod_MergeNested() : value === "merge_flattened" ? LinkMergeMethod_MergeFlattened() : void 0;
+  }
+}
+function LinkMergeMethod_$reflection() {
+  return union_type("ARCtrl.CWL.LinkMergeMethod", [], LinkMergeMethod, () => [[], []]);
+}
+function PickValueMethod_FirstNonNull() {
+  return new PickValueMethod(0, []);
+}
+function PickValueMethod_TheOnlyNonNull() {
+  return new PickValueMethod(1, []);
+}
+function PickValueMethod_AllNonNull() {
+  return new PickValueMethod(2, []);
+}
+class PickValueMethod extends Union {
+  constructor(tag, fields) {
+    super();
+    this.tag = tag;
+    this.fields = fields;
+  }
+  cases() {
+    return ["FirstNonNull", "TheOnlyNonNull", "AllNonNull"];
+  }
+  get AsCwlString() {
+    const this$ = this;
+    return this$.tag === /* TheOnlyNonNull */
+    1 ? "the_only_non_null" : this$.tag === /* AllNonNull */
+    2 ? "all_non_null" : "first_non_null";
+  }
+  static tryParse(value) {
+    return value === "first_non_null" ? PickValueMethod_FirstNonNull() : value === "the_only_non_null" ? PickValueMethod_TheOnlyNonNull() : value === "all_non_null" ? PickValueMethod_AllNonNull() : void 0;
+  }
+}
+function PickValueMethod_$reflection() {
+  return union_type("ARCtrl.CWL.PickValueMethod", [], PickValueMethod, () => [[], [], []]);
+}
+function ScatterMethod_DotProduct() {
+  return new ScatterMethod(0, []);
+}
+function ScatterMethod_NestedCrossProduct() {
+  return new ScatterMethod(1, []);
+}
+function ScatterMethod_FlatCrossProduct() {
+  return new ScatterMethod(2, []);
+}
+class ScatterMethod extends Union {
+  constructor(tag, fields) {
+    super();
+    this.tag = tag;
+    this.fields = fields;
+  }
+  cases() {
+    return ["DotProduct", "NestedCrossProduct", "FlatCrossProduct"];
+  }
+  get AsCwlString() {
+    const this$ = this;
+    return this$.tag === /* NestedCrossProduct */
+    1 ? "nested_crossproduct" : this$.tag === /* FlatCrossProduct */
+    2 ? "flat_crossproduct" : "dotproduct";
+  }
+  static tryParse(value) {
+    return value === "dotproduct" ? ScatterMethod_DotProduct() : value === "nested_crossproduct" ? ScatterMethod_NestedCrossProduct() : value === "flat_crossproduct" ? ScatterMethod_FlatCrossProduct() : void 0;
+  }
+}
+function ScatterMethod_$reflection() {
+  return union_type("ARCtrl.CWL.ScatterMethod", [], ScatterMethod, () => [[], [], []]);
+}
+class StepInput extends Record {
+  constructor(Id, Source, DefaultValue, ValueFrom, LinkMerge, PickValue, Doc, LoadContents, LoadListing, Label) {
+    super();
+    this.Id = Id;
+    this.Source = Source;
+    this.DefaultValue = DefaultValue;
+    this.ValueFrom = ValueFrom;
+    this.LinkMerge = LinkMerge;
+    this.PickValue = PickValue;
+    this.Doc = Doc;
+    this.LoadContents = LoadContents;
+    this.LoadListing = LoadListing;
+    this.Label = Label;
+  }
+  static create(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label) {
+    return new StepInput(id, source, defaultValue, valueFrom, linkMerge, pickValue, doc, loadContents, loadListing, label);
+  }
+  static updateAt(index, f, inputs) {
+    if (index < 0 ? true : index >= inputs.length) {
+      throw new Error(`StepInput index ${index} is out of range.\\nParameter name: index`);
+    }
+    setItem(inputs, index, f(inputs[index]));
+  }
+}
+function StepInput_$reflection() {
+  return record_type("ARCtrl.CWL.StepInput", [], StepInput, () => [["Id", string_type], ["Source", option_type(array_type(string_type))], ["DefaultValue", option_type(YAMLElement_$reflection())], ["ValueFrom", option_type(string_type)], ["LinkMerge", option_type(LinkMergeMethod_$reflection())], ["PickValue", option_type(PickValueMethod_$reflection())], ["Doc", option_type(string_type)], ["LoadContents", option_type(bool_type)], ["LoadListing", option_type(string_type)], ["Label", option_type(string_type)]]);
+}
+class StepOutputParameter extends Record {
+  constructor(Id) {
+    super();
+    this.Id = Id;
+  }
+  static create(id) {
+    return new StepOutputParameter(id);
+  }
+}
+function StepOutputParameter_$reflection() {
+  return record_type("ARCtrl.CWL.StepOutputParameter", [], StepOutputParameter, () => [["Id", string_type]]);
+}
+function StepOutput_StepOutputString(Item) {
+  return new StepOutput(0, [Item]);
+}
+function StepOutput_StepOutputRecord(Item) {
+  return new StepOutput(1, [Item]);
+}
+class StepOutput extends Union {
+  constructor(tag, fields) {
+    super();
+    this.tag = tag;
+    this.fields = fields;
+  }
+  cases() {
+    return ["StepOutputString", "StepOutputRecord"];
+  }
+}
+function StepOutput_$reflection() {
+  return union_type("ARCtrl.CWL.StepOutput", [], StepOutput, () => [[["Item", string_type]], [["Item", StepOutputParameter_$reflection()]]]);
+}
+function WorkflowStepRun_RunString(Item) {
+  return new WorkflowStepRun(0, [Item]);
+}
+function WorkflowStepRun_RunCommandLineTool(Item) {
+  return new WorkflowStepRun(1, [Item]);
+}
+function WorkflowStepRun_RunWorkflow(Item) {
+  return new WorkflowStepRun(2, [Item]);
+}
+function WorkflowStepRun_RunExpressionTool(Item) {
+  return new WorkflowStepRun(3, [Item]);
+}
+function WorkflowStepRun_RunOperation(Item) {
+  return new WorkflowStepRun(4, [Item]);
+}
+class WorkflowStepRun extends Union {
+  constructor(tag, fields) {
+    super();
+    this.tag = tag;
+    this.fields = fields;
+  }
+  cases() {
+    return ["RunString", "RunCommandLineTool", "RunWorkflow", "RunExpressionTool", "RunOperation"];
+  }
+}
+function WorkflowStepRun_$reflection() {
+  return union_type("ARCtrl.CWL.WorkflowStepRun", [], WorkflowStepRun, () => [[["Item", string_type]], [["Item", obj_type]], [["Item", obj_type]], [["Item", obj_type]], [["Item", obj_type]]]);
+}
+class WorkflowStep extends DynamicObj {
+  constructor(id, in_, out_, run, label, doc, scatter, scatterMethod, when_, requirements, hints) {
+    super();
+    this._id = id;
+    this._in = in_;
+    this._out = out_;
+    this._run = run;
+    this._label = label;
+    this._doc = doc;
+    this._scatter = scatter;
+    this._scatterMethod = scatterMethod;
+    this._when = when_;
+    this._requirements = requirements;
+    this._hints = hints;
+  }
+  get Id() {
+    const this$ = this;
+    return this$._id;
+  }
+  set Id(id) {
+    const this$ = this;
+    this$._id = id;
+  }
+  get In() {
+    const this$ = this;
+    return this$._in;
+  }
+  set In(in_) {
+    const this$ = this;
+    this$._in = in_;
+  }
+  get Out() {
+    const this$ = this;
+    return this$._out;
+  }
+  set Out(out_) {
+    const this$ = this;
+    this$._out = out_;
+  }
+  get Run() {
+    const this$ = this;
+    return this$._run;
+  }
+  set Run(run) {
+    const this$ = this;
+    this$._run = run;
+  }
+  get Label() {
+    const this$ = this;
+    return unwrap(this$._label);
+  }
+  set Label(label) {
+    const this$ = this;
+    this$._label = label;
+  }
+  get Doc() {
+    const this$ = this;
+    return unwrap(this$._doc);
+  }
+  set Doc(doc) {
+    const this$ = this;
+    this$._doc = doc;
+  }
+  get Scatter() {
+    const this$ = this;
+    return unwrap(this$._scatter);
+  }
+  set Scatter(scatter) {
+    const this$ = this;
+    this$._scatter = scatter;
+  }
+  get ScatterMethod() {
+    const this$ = this;
+    return unwrap(this$._scatterMethod);
+  }
+  set ScatterMethod(scatterMethod) {
+    const this$ = this;
+    this$._scatterMethod = scatterMethod;
+  }
+  get When_() {
+    const this$ = this;
+    return unwrap(this$._when);
+  }
+  set When_(when_) {
+    const this$ = this;
+    this$._when = when_;
+  }
+  get Requirements() {
+    const this$ = this;
+    return unwrap(this$._requirements);
+  }
+  set Requirements(requirements) {
+    const this$ = this;
+    this$._requirements = requirements;
+  }
+  get Hints() {
+    const this$ = this;
+    return unwrap(this$._hints);
+  }
+  set Hints(hints) {
+    const this$ = this;
+    this$._hints = hints;
+  }
+  static fromRunPath(id, in_, out_, runPath, label, doc, scatter, scatterMethod, when_, requirements, hints) {
+    return new WorkflowStep(id, in_, out_, WorkflowStepRun_RunString(runPath), unwrap(label), unwrap(doc), unwrap(scatter), unwrap(scatterMethod), unwrap(when_), unwrap(requirements), unwrap(hints));
+  }
+  static updateInputAt(index, f, step) {
+    const inputs = step.In;
+    StepInput.updateAt(index, f, inputs);
+  }
+  static addInput(input, step) {
+    void step.In.push(input);
+  }
+  static removeInputsById(id, step) {
+    let remaining;
+    const collection = filter((i) => i.Id !== id, step.In);
+    remaining = Array.from(collection);
+    step.In = remaining;
+  }
+  static updateInputById(id, f, step) {
+    iterate((i_1) => {
+      const inputs = step.In;
+      StepInput.updateAt(i_1, f, inputs);
+    }, toArray(tryFindIndex((i) => i.Id === id, step.In)));
+  }
+}
+function WorkflowStep_$reflection() {
+  return class_type("ARCtrl.CWL.WorkflowStep", void 0, WorkflowStep, DynamicObj_$reflection());
+}
+function WorkflowStep_$ctor_Z76380C57(id, in_, out_, run, label, doc, scatter, scatterMethod, when_, requirements, hints) {
+  return new WorkflowStep(id, in_, out_, run, label, doc, scatter, scatterMethod, when_, requirements, hints);
+}
+
+export { LinkMergeMethod, LinkMergeMethod_$reflection, LinkMergeMethod_MergeFlattened, LinkMergeMethod_MergeNested, PickValueMethod, PickValueMethod_$reflection, PickValueMethod_AllNonNull, PickValueMethod_FirstNonNull, PickValueMethod_TheOnlyNonNull, ScatterMethod, ScatterMethod_$reflection, ScatterMethod_DotProduct, ScatterMethod_FlatCrossProduct, ScatterMethod_NestedCrossProduct, StepInput, StepInput_$reflection, StepOutput, StepOutputParameter, StepOutputParameter_$reflection, StepOutput_$reflection, StepOutput_StepOutputRecord, StepOutput_StepOutputString, WorkflowStep, WorkflowStepRun, WorkflowStepRun_$reflection, WorkflowStepRun_RunCommandLineTool, WorkflowStepRun_RunExpressionTool, WorkflowStepRun_RunOperation, WorkflowStepRun_RunString, WorkflowStepRun_RunWorkflow, WorkflowStep_$ctor_Z76380C57, WorkflowStep_$reflection };

package/dist/ts/ts/CWLRunResolver.d.ts

@@ -0,0 +1,45 @@
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { FSharpMap } from '@fable-org/fable-library-js/Map.js';
+import { CWLProcessingUnit_$union } from './CWL/CWLProcessingUnit.js';
+import { IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { WorkflowStepRun_$union } from './CWL/WorkflowSteps.js';
+import { FSharpSet } from '@fable-org/fable-library-js/Set.js';
+import { CWLWorkflowDescription } from './CWL/WorkflowDescription.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+/**
+ * Normalizes a file path for use as a lookup key.
+ */
+export declare function pathKey(path: string): string;
+export declare class RunResolutionState extends Record implements IEquatable<RunResolutionState> {
+    Cache: FSharpMap<string, CWLProcessingUnit_$union>;
+    constructor(Cache: FSharpMap<string, CWLProcessingUnit_$union>);
+}
+export declare function RunResolutionState_$reflection(): TypeInfo;
+/**
+ * Generates candidate lookup paths for a .cwl run reference relative to a workflow file.
+ */
+export declare function getRunNodeCandidates(workflowFilePath: string, runPath: string): string[];
+export declare function cacheResolvedProcessingUnit(state: RunResolutionState, candidateKeys: string[], processingUnit: CWLProcessingUnit_$union): void;
+export declare function runFromProcessingUnit(processingUnit: CWLProcessingUnit_$union): WorkflowStepRun_$union;
+/**
+ * Iterates all steps in a workflow and resolves each step's run field recursively.
+ */
+export declare function resolveWorkflowRunsRecursiveWithResolver(workflowFilePath: string, activePathKeys: FSharpSet<string>, state: RunResolutionState, workflow: CWLWorkflowDescription, tryResolveRunPath: ((arg0: string) => Option<CWLProcessingUnit_$union>)): void;
+/**
+ * Resolves a single WorkflowStepRun, trying each candidate path against the resolver for RunString values.
+ */
+export declare function resolveWorkflowStepRunRecursiveWithResolver(workflowFilePath: string, activePathKeys: FSharpSet<string>, state: RunResolutionState, run: WorkflowStepRun_$union, tryResolveRunPath: ((arg0: string) => Option<CWLProcessingUnit_$union>)): WorkflowStepRun_$union;
+/**
+ * Resolves all CWL WorkflowStep run references for a processing unit by looking up
+ * run path strings in the provided resolver function. For Workflow processing units,
+ * this recursively resolves all nested step run references in-place.
+ * CommandLineTool and ExpressionTool processing units are returned unchanged.
+ */
+export declare function resolveRunReferencesFromLookup(workflowFilePath: string, processingUnit: CWLProcessingUnit_$union, tryResolveRunPath: ((arg0: string) => Option<CWLProcessingUnit_$union>)): CWLProcessingUnit_$union;
+/**
+ * Resolves a single workflow step run value by looking up the run path string
+ * in the provided resolver function. Returns the resolved run value.
+ */
+export declare function resolveWorkflowStepRunFromLookup(workflowFilePath: string, run: WorkflowStepRun_$union, tryResolveRunPath: ((arg0: string) => Option<CWLProcessingUnit_$union>)): WorkflowStepRun_$union;
+//# sourceMappingURL=CWLRunResolver.d.ts.map