@nfdi4plants/arctrl 2.0.1 → 2.1.0-alpha.2

package/Spreadsheet/AnnotationTable/CompositeHeader.js

@@ -1,13 +1,13 @@
-import { printf, toFail } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { printf, toFail } from "../../fable_modules/fable-library-js.4.22.0/String.js";
 import { OntologyAnnotation } from "../../Core/OntologyAnnotation.js";
 import { freeTextFromStringCells, dataFromStringCells, unitizedFromStringCells, termFromStringCells } from "./CompositeCell.js";
-import { tryFindIndex, skip, item, equalsWith } from "../../fable_modules/fable-library-js.4.16.0/Array.js";
-import { defaultOf } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
+import { tryFindIndex, skip, item, equalsWith } from "../../fable_modules/fable-library-js.4.22.0/Array.js";
+import { defaultOf } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
 import { ActivePatterns_$007CComment$007C_$007C, ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CInputColumnHeader$007C_$007C, tryParseComponentColumnHeader, tryParseCharacteristicColumnHeader, tryParseFactorColumnHeader, tryParseParameterColumnHeader, ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C } from "../../Core/Helper/Regex.js";
 import { IOType, CompositeHeader } from "../../Core/Table/CompositeHeader.js";
-import { map } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
-import { toString } from "../../fable_modules/fable-library-js.4.16.0/Types.js";
-import { empty, singleton, append, delay, toArray } from "../../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { map } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { toString } from "../../fable_modules/fable-library-js.4.22.0/Types.js";
+import { empty, singleton, append, delay, toArray } from "../../fable_modules/fable-library-js.4.22.0/Seq.js";
 
 export function ActivePattern_mergeIDInfo(idSpace1, localID1, idSpace2, localID2) {
     if (idSpace1 !== idSpace2) {
@@ -64,7 +64,7 @@ export function ActivePattern_$007CTerm$007C_$007C(categoryParser, f, cellValues
     }
     switch (matchResult) {
         case 0:
-            return [f(OntologyAnnotation.create(name)), (cellValues_1) => termFromStringCells(void 0, void 0, cellValues_1)];
+            return [f(OntologyAnnotation.create(name)), (cellValues_1) => termFromStringCells(undefined, undefined, cellValues_1)];
         case 1: {
             const term = ActivePattern_mergeIDInfo(term1.IDSpace, term1.LocalID, term2.IDSpace, term2.LocalID);
             return [f(OntologyAnnotation.create(name_1, term.TermSourceRef, term.TermAccessionNumber)), (cellValues_2) => termFromStringCells(1, 2, cellValues_2)];
@@ -182,7 +182,7 @@ export function ActivePattern_$007CTerm$007C_$007C(categoryParser, f, cellValues
                                     return [f(OntologyAnnotation.create(name_4, term_3.TermSourceRef, term_3.TermAccessionNumber)), (cellValues_5) => unitizedFromStringCells(1, 3, 2, cellValues_5)];
                                 }
                                 default:
-                                    return void 0;
+                                    return undefined;
                             }
                         }
                     }
@@ -199,7 +199,7 @@ export function ActivePattern_$007CParameter$007C_$007C(cellValues) {
         return r;
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -210,7 +210,7 @@ export function ActivePattern_$007CFactor$007C_$007C(cellValues) {
         return r;
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -221,7 +221,7 @@ export function ActivePattern_$007CCharacteristic$007C_$007C(cellValues) {
         return r;
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -232,13 +232,13 @@ export function ActivePattern_$007CComponent$007C_$007C(cellValues) {
         return r;
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 
 export function ActivePattern_$007CInput$007C_$007C(cellValues) {
     if (cellValues.length === 0) {
-        return void 0;
+        return undefined;
     }
     else {
         const matchValue = item(0, cellValues);
@@ -248,8 +248,8 @@ export function ActivePattern_$007CInput$007C_$007C(cellValues) {
             const cols = skip(1, cellValues);
             const matchValue_1 = IOType.ofString(ioType);
             if (matchValue_1.tag === 2) {
-                const format = map((y) => (1 + y), tryFindIndex((s) => (s.indexOf("Data Format") === 0), cols));
-                const selectorFormat = map((y_1) => (1 + y_1), tryFindIndex((s_1) => (s_1.indexOf("Data Selector Format") === 0), cols));
+                const format = map((y) => (1 + y), tryFindIndex((s) => s.startsWith("Data Format"), cols));
+                const selectorFormat = map((y_1) => (1 + y_1), tryFindIndex((s_1) => s_1.startsWith("Data Selector Format"), cols));
                 return [new CompositeHeader(11, [new IOType(2, [])]), (cellValues_1) => dataFromStringCells(format, selectorFormat, cellValues_1)];
             }
             else {
@@ -257,14 +257,14 @@ export function ActivePattern_$007CInput$007C_$007C(cellValues) {
             }
         }
         else {
-            return void 0;
+            return undefined;
         }
     }
 }
 
 export function ActivePattern_$007COutput$007C_$007C(cellValues) {
     if (cellValues.length === 0) {
-        return void 0;
+        return undefined;
     }
     else {
         const matchValue = item(0, cellValues);
@@ -274,8 +274,8 @@ export function ActivePattern_$007COutput$007C_$007C(cellValues) {
             const cols = skip(1, cellValues);
             const matchValue_1 = IOType.ofString(ioType);
             if (matchValue_1.tag === 2) {
-                const format = map((y) => (1 + y), tryFindIndex((s) => (s.indexOf("Data Format") === 0), cols));
-                const selectorFormat = map((y_1) => (1 + y_1), tryFindIndex((s_1) => (s_1.indexOf("Data Selector Format") === 0), cols));
+                const format = map((y) => (1 + y), tryFindIndex((s) => s.startsWith("Data Format"), cols));
+                const selectorFormat = map((y_1) => (1 + y_1), tryFindIndex((s_1) => s_1.startsWith("Data Selector Format"), cols));
                 return [new CompositeHeader(12, [new IOType(2, [])]), (cellValues_1) => dataFromStringCells(format, selectorFormat, cellValues_1)];
             }
             else {
@@ -283,7 +283,7 @@ export function ActivePattern_$007COutput$007C_$007C(cellValues) {
             }
         }
         else {
-            return void 0;
+            return undefined;
         }
     }
 }
@@ -307,7 +307,7 @@ export function ActivePattern_$007CComment$007C_$007C(cellValues) {
         case 0:
             return [new CompositeHeader(14, [key]), freeTextFromStringCells];
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -317,7 +317,7 @@ export function ActivePattern_$007CProtocolType$007C_$007C(cellValues) {
             return s;
         }
         else {
-            return void 0;
+            return undefined;
         }
     }, (_arg) => (new CompositeHeader(4, [])), cellValues);
     if (activePatternResult != null) {
@@ -325,7 +325,7 @@ export function ActivePattern_$007CProtocolType$007C_$007C(cellValues) {
         return r;
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -371,7 +371,7 @@ export function ActivePattern_$007CProtocolHeader$007C_$007C(cellValues) {
         case 5:
             return [new CompositeHeader(10, []), freeTextFromStringCells];
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -380,7 +380,7 @@ export function ActivePattern_$007CFreeText$007C_$007C(cellValues) {
         return [new CompositeHeader(13, [item(0, cellValues)]), freeTextFromStringCells];
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 

package/Spreadsheet/ArcAssay.js

@@ -1,17 +1,17 @@
-import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.2.0/FsWorksheet.fs.js";
-import { iterate, isEmpty as isEmpty_1, tryPick, choose, tryFind, tryHead, head, exists, map, singleton, append, delay, iterateIndexed } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorksheet.fs.js";
+import { iterate, isEmpty as isEmpty_1, tryPick, choose, tryFind, tryHead, head, exists, map, singleton, append, delay, iterateIndexed } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
 import { SparseRowModule_tryGetValueAt, SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_writeToSheet } from "./Metadata/SparseTable.js";
 import { fromRows as fromRows_1, toRows as toRows_1 } from "./Metadata/Assays.js";
-import { empty, isEmpty, ofSeq, singleton as singleton_1 } from "../fable_modules/fable-library-js.4.16.0/List.js";
+import { empty, isEmpty, ofSeq, singleton as singleton_1 } from "../fable_modules/fable-library-js.4.22.0/List.js";
 import { fromRows as fromRows_2, toRows as toRows_2 } from "./Metadata/Contacts.js";
-import { toConsole, printf, toFail } from "../fable_modules/fable-library-js.4.16.0/String.js";
-import { getEnumerator } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { toConsole, printf, toFail } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { getEnumerator } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { ArcAssay } from "../Core/ArcTypes.js";
 import { createMissingIdentifier } from "../Core/Helper/Identifier.js";
-import { unwrap, toArray, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { unwrap, toArray, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
 import { toFsWorksheet as toFsWorksheet_1, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
 import { toFsWorksheet, tryFromFsWorksheet as tryFromFsWorksheet_1 } from "./DataMapTable/DataMapTable.js";
-import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.2.0/FsWorkbook.fs.js";
+import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorkbook.fs.js";
 
 export function ArcAssay_toMetadataSheet(assay) {
     let assay_1;
@@ -27,8 +27,8 @@ export function ArcAssay_fromMetadataSheet(sheet) {
         const rows_1 = map(SparseRowModule_fromFsRow, sheet.Rows);
         const patternInput = exists((row) => {
             const s = head(row)[1];
-            return s.indexOf("Assay") === 0;
-        }, rows_1) ? ["Assay", "Assay Person"] : [void 0, void 0];
+            return s.startsWith("Assay");
+        }, rows_1) ? ["Assay", "Assay Person"] : [undefined, undefined];
         const en = getEnumerator(rows_1);
         const loop = (lastLine_mut, assays_mut, contacts_mut, lineNumber_mut) => {
             let k;

package/Spreadsheet/ArcInvestigation.js

@@ -1,24 +1,24 @@
-import { Record } from "../fable_modules/fable-library-js.4.16.0/Types.js";
-import { record_type, list_type, string_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Record } from "../fable_modules/fable-library-js.4.22.0/Types.js";
+import { record_type, list_type, string_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
 import { Remark, Comment$_$reflection } from "../Core/Comment.js";
-import { head, tail, isEmpty, ofSeq, concat, unzip, append, reverse, cons, empty, map, ofArray } from "../fable_modules/fable-library-js.4.16.0/List.js";
+import { head, tail, isEmpty, ofSeq, concat, unzip, append, reverse, cons, empty, map, ofArray } from "../fable_modules/fable-library-js.4.22.0/List.js";
 import { Remark_wrapRemark, Comment_toString, Comment_fromString } from "./Metadata/Comment.js";
 import { SparseRowModule_writeToSheet, SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_tryGetValueAt, SparseTable_ToRows_759CAFC1, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValueDefault_5BAE6133 } from "./Metadata/SparseTable.js";
-import { addToDict } from "../fable_modules/fable-library-js.4.16.0/MapUtil.js";
-import { value as value_1, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { addToDict } from "../fable_modules/fable-library-js.4.22.0/MapUtil.js";
+import { value as value_1, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
 import { Option_fromValueWithDefault, ResizeArray_iter } from "../Core/Helper/Collections.js";
-import { List_distinctBy, List_distinct } from "../fable_modules/fable-library-js.4.16.0/Seq2.js";
-import { comparePrimitives, getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { List_distinctBy, List_distinct } from "../fable_modules/fable-library-js.4.22.0/Seq2.js";
+import { comparePrimitives, getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { ArcStudy, ArcInvestigation } from "../Core/ArcTypes.js";
 import { toRows, fromRows } from "./Metadata/OntologySourceReference.js";
 import { toRows as toRows_1, fromRows as fromRows_1 } from "./Metadata/Publication.js";
 import { toRows as toRows_2, fromRows as fromRows_2 } from "./Metadata/Contacts.js";
 import { toRows as toRows_3, fromRows as fromRows_3 } from "./Metadata/Study.js";
-import { iterateIndexed, map as map_1, tryFind as tryFind_1, toList, collect, singleton, append as append_1, delay } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
-import { tryFind, ofList } from "../fable_modules/fable-library-js.4.16.0/Map.js";
-import { printf, toFail } from "../fable_modules/fable-library-js.4.16.0/String.js";
-import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.2.0/FsWorksheet.fs.js";
-import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.2.0/FsWorkbook.fs.js";
+import { iterateIndexed, map as map_1, tryFind as tryFind_1, toList, collect, singleton, append as append_1, delay } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { tryFind, ofList } from "../fable_modules/fable-library-js.4.22.0/Map.js";
+import { printf, toFail } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorksheet.fs.js";
+import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorkbook.fs.js";
 
 export class ArcInvestigation_InvestigationInfo extends Record {
     constructor(Identifier, Title, Description, SubmissionDate, PublicReleaseDate, Comments) {
@@ -50,7 +50,7 @@ export function ArcInvestigation_InvestigationInfo_FromSparseTable_3ECCA699(matr
 }
 
 export function ArcInvestigation_InvestigationInfo_ToSparseTable_Z720BD3FF(investigation) {
-    const matrix = SparseTable_Create_Z2192E64B(void 0, ArcInvestigation_InvestigationInfo_get_Labels(), void 0, 2);
+    const matrix = SparseTable_Create_Z2192E64B(undefined, ArcInvestigation_InvestigationInfo_get_Labels(), undefined, 2);
     let commentKeys = empty();
     addToDict(matrix.Matrix, ["Investigation Identifier", 1], investigation.Identifier);
     addToDict(matrix.Matrix, ["Investigation Title", 1], defaultArg(investigation.Title, ""));
@@ -243,7 +243,7 @@ export function ArcInvestigation_toRows(investigation) {
     let remarks, rows;
     return (remarks = ofSeq(investigation.Remarks), (rows = delay(() => append_1(singleton(SparseRowModule_fromValues(["ONTOLOGY SOURCE REFERENCE"])), delay(() => append_1(toRows(ofSeq(investigation.OntologySourceReferences)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION"])), delay(() => append_1(ArcInvestigation_InvestigationInfo_toRows_Z720BD3FF(investigation), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION PUBLICATIONS"])), delay(() => append_1(toRows_1("Investigation Publication", ofSeq(investigation.Publications)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION CONTACTS"])), delay(() => append_1(toRows_2("Investigation Person", ofSeq(investigation.Contacts)), delay(() => collect((studyIdentifier) => {
         const study = defaultArg(investigation.TryGetStudy(studyIdentifier), new ArcStudy(studyIdentifier));
-        return append_1(singleton(SparseRowModule_fromValues(["STUDY"])), delay(() => toRows_3(study, void 0)));
+        return append_1(singleton(SparseRowModule_fromValues(["STUDY"])), delay(() => toRows_3(study, undefined)));
     }, investigation.RegisteredStudyIdentifiers)))))))))))))))))), (() => {
         try {
             const rm = ofList(map((remark) => Remark.toTuple(remark), remarks), {

package/Spreadsheet/ArcStudy.js

@@ -1,17 +1,17 @@
-import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.2.0/FsWorksheet.fs.js";
-import { iterate, tryPick, tryFind, map, append, iterateIndexed } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorksheet.fs.js";
+import { iterate, tryPick, tryFind, map, append, iterateIndexed } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
 import { SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_writeToSheet } from "./Metadata/SparseTable.js";
 import { fromRows as fromRows_1, toRows } from "./Metadata/Study.js";
-import { toConsole, printf, toFail } from "../fable_modules/fable-library-js.4.16.0/String.js";
-import { unwrap, toArray, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
-import { getEnumerator } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { toConsole, printf, toFail } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { unwrap, toArray, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { getEnumerator } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { ArcStudy } from "../Core/ArcTypes.js";
 import { createMissingIdentifier } from "../Core/Helper/Identifier.js";
-import { empty } from "../fable_modules/fable-library-js.4.16.0/List.js";
+import { empty } from "../fable_modules/fable-library-js.4.22.0/List.js";
 import { ResizeArray_isEmpty, ResizeArray_choose } from "../Core/Helper/Collections.js";
 import { toFsWorksheet as toFsWorksheet_1, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
 import { toFsWorksheet, tryFromFsWorksheet as tryFromFsWorksheet_1 } from "./DataMapTable/DataMapTable.js";
-import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.2.0/FsWorkbook.fs.js";
+import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorkbook.fs.js";
 
 export function ArcStudy_toMetadataSheet(study, assays) {
     let source_1;

package/Spreadsheet/CollectionAux.js

@@ -1,10 +1,10 @@
-import { tryFind, maxBy, skip } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
-import { item, tryItem, skip as skip_1, initialize } from "../fable_modules/fable-library-js.4.16.0/Array.js";
-import { defaultOf, comparePrimitives } from "../fable_modules/fable-library-js.4.16.0/Util.js";
-import { some, value } from "../fable_modules/fable-library-js.4.16.0/Option.js";
-import { empty, tail, cons, head, reverse, isEmpty, tryPick } from "../fable_modules/fable-library-js.4.16.0/List.js";
-import { tryGetValue } from "../fable_modules/fable-library-js.4.16.0/MapUtil.js";
-import { FSharpRef } from "../fable_modules/fable-library-js.4.16.0/Types.js";
+import { tryFind, maxBy, skip } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { item, tryItem, skip as skip_1, initialize } from "../fable_modules/fable-library-js.4.22.0/Array.js";
+import { defaultOf, comparePrimitives } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { some, value } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { empty, tail, cons, head, reverse, isEmpty, tryPick } from "../fable_modules/fable-library-js.4.22.0/List.js";
+import { tryGetValue } from "../fable_modules/fable-library-js.4.22.0/MapUtil.js";
+import { FSharpRef } from "../fable_modules/fable-library-js.4.22.0/Types.js";
 
 /**
  * If at least i values exist in seq a, builds a new array that contains the elements of the given seq, exluding the first i elements
@@ -14,7 +14,7 @@ export function Seq_trySkip(i, s) {
         return skip(i, s);
     }
     catch (matchValue) {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -41,7 +41,7 @@ export function Array_trySkip(i, a) {
         return skip_1(i, a);
     }
     catch (matchValue) {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -107,7 +107,7 @@ export function Dictionary_tryGetValue(k, dict) {
         return some(patternInput[1]);
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -122,7 +122,7 @@ export function Dictionary_tryGetString(k, dict) {
         return v_1.trim();
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 

package/Spreadsheet/DataMap.js

@@ -1,7 +1,7 @@
-import { printf, toFail } from "../fable_modules/fable-library-js.4.16.0/String.js";
-import { tryPick } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { printf, toFail } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { tryPick } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
 import { toFsWorksheet, tryFromFsWorksheet } from "./DataMapTable/DataMapTable.js";
-import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.2.0/FsWorkbook.fs.js";
+import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorkbook.fs.js";
 
 /**
  * Reads an datamap from a spreadsheet

package/Spreadsheet/DataMapTable/DataMapColumn.js

@@ -1,10 +1,10 @@
 import { toFsCells, fromFsCells } from "./DataMapHeader.js";
-import { transpose, singleton, ofArray, map } from "../../fable_modules/fable-library-js.4.16.0/List.js";
-import { tryFind, singleton as singleton_1, append, delay, map as map_1, collect, toList } from "../../fable_modules/fable-library-js.4.16.0/Seq.js";
-import { distinct } from "../../fable_modules/fable-library-js.4.16.0/Seq2.js";
-import { bind, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
-import { stringHash } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
-import { FsCell } from "../../fable_modules/FsSpreadsheet.6.2.0/Cells/FsCell.fs.js";
+import { transpose, singleton, ofArray, map } from "../../fable_modules/fable-library-js.4.22.0/List.js";
+import { tryFind, singleton as singleton_1, append, delay, map as map_1, collect, toList } from "../../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { distinct } from "../../fable_modules/fable-library-js.4.22.0/Seq2.js";
+import { bind, defaultArg } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
+import { stringHash } from "../../fable_modules/fable-library-js.4.22.0/Util.js";
+import { FsCell } from "../../fable_modules/FsSpreadsheet.6.3.0-alpha.4/Cells/FsCell.fs.js";
 import { DataContext__get_GeneratedBy, DataContext__get_Description, DataContext__get_ObjectType, DataContext__get_Unit, DataContext__get_Explication } from "../../Core/DataContext.js";
 
 export function setFromFsColumns(dc, columns) {

package/Spreadsheet/DataMapTable/DataMapHeader.js

@@ -1,19 +1,19 @@
-import { tryFindIndex, tail, head, isEmpty, item, map } from "../../fable_modules/fable-library-js.4.16.0/List.js";
-import { map as map_1 } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
+import { tryFindIndex, tail, head, isEmpty, item, map } from "../../fable_modules/fable-library-js.4.22.0/List.js";
+import { unwrap, map as map_1 } from "../../fable_modules/fable-library-js.4.22.0/Option.js";
 import { OntologyAnnotation } from "../../Core/OntologyAnnotation.js";
 import { Data } from "../../Core/Data.js";
 import { DataContext__set_GeneratedBy_6DFDD678, DataContext__set_Description_6DFDD678, DataContext__set_ObjectType_279AAFF2, DataContext__set_Unit_279AAFF2, DataContext__set_Explication_279AAFF2 } from "../../Core/DataContext.js";
 import { Comment$ } from "../../Core/Comment.js";
 import { ActivePatterns_$007CComment$007C_$007C } from "../../Core/Helper/Regex.js";
-import { printf, toFail, join } from "../../fable_modules/fable-library-js.4.16.0/String.js";
-import { map as map_2, append, delay, toList } from "../../fable_modules/fable-library-js.4.16.0/Seq.js";
-import { FsCell } from "../../fable_modules/FsSpreadsheet.6.2.0/Cells/FsCell.fs.js";
+import { printf, toFail, join } from "../../fable_modules/fable-library-js.4.22.0/String.js";
+import { map as map_2, append, delay, toList } from "../../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { FsCell } from "../../fable_modules/FsSpreadsheet.6.3.0-alpha.4/Cells/FsCell.fs.js";
 
 export function ActivePattern_ontologyAnnotationFromFsCells(tsrCol, tanCol, cells) {
     const cellValues = map((c) => c.ValueAsString(), cells);
     const tsr = map_1((i) => item(i, cellValues), tsrCol);
     const tan = map_1((i_1) => item(i_1, cellValues), tanCol);
-    return new OntologyAnnotation(item(0, cellValues), tsr, tan);
+    return new OntologyAnnotation(item(0, cellValues), unwrap(tsr), unwrap(tan));
 }
 
 export function ActivePattern_freeTextFromFsCells(cells) {
@@ -24,7 +24,7 @@ export function ActivePattern_dataFromFsCells(format, selectorFormat, cells) {
     const cellValues = map((c) => c.ValueAsString(), cells);
     const format_1 = map_1((i) => item(i, cellValues), format);
     const selectorFormat_1 = map_1((i_1) => item(i_1, cellValues), selectorFormat);
-    return new Data(void 0, item(0, cellValues), void 0, format_1, selectorFormat_1);
+    return new Data(undefined, item(0, cellValues), undefined, unwrap(format_1), unwrap(selectorFormat_1));
 }
 
 export function ActivePattern_$007CTerm$007C_$007C(categoryString, cells) {
@@ -33,23 +33,23 @@ export function ActivePattern_$007CTerm$007C_$007C(categoryString, cells) {
             return 1;
         }
         else {
-            return void 0;
+            return undefined;
         }
     };
     const $007CTSRColumnHeaderRaw$007C_$007C = (s_1) => {
-        if (s_1.indexOf("Term Source REF") === 0) {
+        if (s_1.startsWith("Term Source REF")) {
             return s_1;
         }
         else {
-            return void 0;
+            return undefined;
         }
     };
     const $007CTANColumnHeaderRaw$007C_$007C = (s_2) => {
-        if (s_2.indexOf("Term Accession Number") === 0) {
+        if (s_2.startsWith("Term Accession Number")) {
             return s_2;
         }
         else {
-            return void 0;
+            return undefined;
         }
     };
     const cellValues = map((c) => c.ValueAsString(), cells);
@@ -74,7 +74,7 @@ export function ActivePattern_$007CTerm$007C_$007C(categoryString, cells) {
     }
     switch (matchResult) {
         case 0:
-            return (cells_1) => ActivePattern_ontologyAnnotationFromFsCells(void 0, void 0, cells_1);
+            return (cells_1) => ActivePattern_ontologyAnnotationFromFsCells(undefined, undefined, cells_1);
         default: {
             let matchResult_1, header_1;
             if (!isEmpty(cellValues)) {
@@ -162,7 +162,7 @@ export function ActivePattern_$007CTerm$007C_$007C(categoryString, cells) {
                         case 0:
                             return (cells_3) => ActivePattern_ontologyAnnotationFromFsCells(2, 1, cells_3);
                         default:
-                            return void 0;
+                            return undefined;
                     }
                 }
             }
@@ -180,7 +180,7 @@ export function ActivePattern_$007CExplication$007C_$007C(cells) {
         });
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -194,7 +194,7 @@ export function ActivePattern_$007CUnit$007C_$007C(cells) {
         });
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -208,7 +208,7 @@ export function ActivePattern_$007CObjectType$007C_$007C(cells) {
         });
     }
     else {
-        return void 0;
+        return undefined;
     }
 }
 
@@ -238,7 +238,7 @@ export function ActivePattern_$007CDescription$007C_$007C(cells) {
                 return dc;
             });
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -268,7 +268,7 @@ export function ActivePattern_$007CGeneratedBy$007C_$007C(cells) {
                 return dc;
             });
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -290,7 +290,7 @@ export function ActivePattern_$007CData$007C_$007C(cells) {
     switch (matchResult) {
         case 0:
             return (dc) => ((cells_1) => {
-                const d = ActivePattern_dataFromFsCells(map_1((y) => (1 + y), tryFindIndex((s) => (s.indexOf("Data Format") === 0), cols)), map_1((y_1) => (1 + y_1), tryFindIndex((s_1) => (s_1.indexOf("Data Selector Format") === 0), cols)), cells_1);
+                const d = ActivePattern_dataFromFsCells(map_1((y) => (1 + y), tryFindIndex((s) => s.startsWith("Data Format"), cols)), map_1((y_1) => (1 + y_1), tryFindIndex((s_1) => s_1.startsWith("Data Selector Format"), cols)), cells_1);
                 dc.FilePath = d.FilePath;
                 dc.Selector = d.Selector;
                 dc.Format = d.Format;
@@ -298,7 +298,7 @@ export function ActivePattern_$007CData$007C_$007C(cells) {
                 return dc;
             });
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -331,7 +331,7 @@ export function ActivePattern_$007CComment$007C_$007C(cells) {
                 return dc;
             });
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -358,7 +358,7 @@ export function ActivePattern_$007CFreetext$007C_$007C(cells) {
                 return dc;
             });
         default:
-            return void 0;
+            return undefined;
     }
 }
 

package/Spreadsheet/DataMapTable/DataMapTable.js

@@ -1,24 +1,24 @@
-import { iterateIndexed, head, length, iterate, exists, ofArray } from "../../fable_modules/fable-library-js.4.16.0/List.js";
+import { iterateIndexed, head, length, iterate, exists, ofArray } from "../../fable_modules/fable-library-js.4.22.0/List.js";
 import { Aux_List_groupWhen } from "../AnnotationTable/ArcTable.js";
-import { toList, map, delay, toArray, item, tryFind } from "../../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { toList, map, delay, toArray, item, tryFind } from "../../fable_modules/fable-library-js.4.22.0/Seq.js";
 import { DataContext_$ctor_Z780A8A2A } from "../../Core/DataContext.js";
-import { rangeDouble } from "../../fable_modules/fable-library-js.4.16.0/Range.js";
+import { rangeDouble } from "../../fable_modules/fable-library-js.4.22.0/Range.js";
 import { toFsColumns, setFromFsColumns } from "./DataMapColumn.js";
-import { printf, toFail } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { printf, toFail } from "../../fable_modules/fable-library-js.4.22.0/String.js";
 import { DataMap__get_DataContexts, DataMap_$ctor_4E3220A7 } from "../../Core/DataMap.js";
-import { FsWorksheet } from "../../fable_modules/FsSpreadsheet.6.2.0/FsWorksheet.fs.js";
-import { FsRangeAddress_$ctor_7E77A4A0 } from "../../fable_modules/FsSpreadsheet.6.2.0/Ranges/FsRangeAddress.fs.js";
-import { FsAddress_$ctor_Z37302880 } from "../../fable_modules/FsSpreadsheet.6.2.0/FsAddress.fs.js";
-import { Dictionary_tryGet } from "../../fable_modules/FsSpreadsheet.6.2.0/Cells/FsCellsCollection.fs.js";
-import { addToDict } from "../../fable_modules/fable-library-js.4.16.0/MapUtil.js";
-import { FsRangeBase__Cell_Z3407A44B } from "../../fable_modules/FsSpreadsheet.6.2.0/Ranges/FsRangeBase.fs.js";
+import { FsWorksheet } from "../../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsWorksheet.fs.js";
+import { FsRangeAddress_$ctor_7E77A4A0 } from "../../fable_modules/FsSpreadsheet.6.3.0-alpha.4/Ranges/FsRangeAddress.fs.js";
+import { FsAddress_$ctor_Z37302880 } from "../../fable_modules/FsSpreadsheet.6.3.0-alpha.4/FsAddress.fs.js";
+import { Dictionary_tryGet } from "../../fable_modules/FsSpreadsheet.6.3.0-alpha.4/Cells/FsCellsCollection.fs.js";
+import { addToDict } from "../../fable_modules/fable-library-js.4.22.0/MapUtil.js";
+import { FsRangeBase__Cell_Z3407A44B } from "../../fable_modules/FsSpreadsheet.6.3.0-alpha.4/Ranges/FsRangeBase.fs.js";
 
 export const helperColumnStrings = ofArray(["Term Source REF", "Term Accession Number", "Data Format", "Data Selector Format"]);
 
 export function groupColumnsByHeader(columns) {
     return Aux_List_groupWhen((c) => {
         const v = c.Item(1).ValueAsString();
-        return !exists((s) => (v.indexOf(s) === 0), helperColumnStrings);
+        return !exists((s) => v.startsWith(s), helperColumnStrings);
     }, columns);
 }
 
@@ -26,7 +26,7 @@ export function groupColumnsByHeader(columns) {
  * Returns the annotation table of the worksheet if it exists, else returns None
  */
 export function tryDataMapTable(sheet) {
-    return tryFind((t) => (t.Name.indexOf("datamapTable") === 0), sheet.Tables);
+    return tryFind((t) => t.Name.startsWith("datamapTable"), sheet.Tables);
 }
 
 /**
@@ -48,7 +48,7 @@ export function tryFromFsWorksheet(sheet) {
     try {
         const matchValue = tryDataMapTable(sheet);
         if (matchValue == null) {
-            return void 0;
+            return undefined;
         }
         else {
             const t = matchValue;