@nfdi4plants/arctrl 2.0.1 → 2.1.0-alpha.2

package/Contract/ValidationPackagesConfig.js

@@ -1,12 +1,12 @@
 import { combineMany } from "../FileSystem/Path.js";
 import { Contract } from "./Contract.js";
-import { item, equalsWith } from "../fable_modules/fable-library-js.4.16.0/Array.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { item, equalsWith } from "../fable_modules/fable-library-js.4.22.0/Array.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_fromYamlString_Static_Z721C83C5, ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toYamlString_Static_71136F3F } from "../Yaml/ValidationPackagesConfig.js";
 
 export const ValidationPackagesConfigHelper_ConfigFilePath = combineMany([".arc", "validation_packages.yml"]);
 
-export const ValidationPackagesConfigHelper_ReadContract = new Contract("READ", ValidationPackagesConfigHelper_ConfigFilePath, "YAML", void 0);
+export const ValidationPackagesConfigHelper_ReadContract = new Contract("READ", ValidationPackagesConfigHelper_ConfigFilePath, "YAML", undefined);
 
 export function ValidationPackagesConfigExtensions_$007CValidationPackagesYamlPath$007C_$007C(input) {
     let matchResult;
@@ -30,7 +30,7 @@ export function ValidationPackagesConfigExtensions_$007CValidationPackagesYamlPa
         case 0:
             return combineMany(input);
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -90,7 +90,7 @@ export function ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPa
         case 0:
             return ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_fromYamlString_Static_Z721C83C5(yaml_1);
         default:
-            return void 0;
+            return undefined;
     }
 }
 

package/Core/ArcTypes.js

@@ -1,17 +1,17 @@
-import { value as value_4, defaultArg, map, unwrap } from "../fable_modules/fable-library-js.4.16.0/Option.js";
-import { collect, append as append_3, tryFind, removeAt, iterate, tryFindIndex, exists, choose, item, map as map_1, delay, toList, fold, length, forAll, contains, filter, toArray } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
-import { defaultOf, safeHash, equals, disposeSafe, getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { value as value_4, defaultArg, map, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { collect, append as append_3, tryFind, removeAt, iterate, tryFindIndex, exists, choose, item, map as map_1, delay, toList, fold, length, forAll, contains, filter, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { defaultOf, safeHash, equals, disposeSafe, getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { ResizeArray_choose, ResizeArray_filter, ResizeArray_map } from "./Helper/Collections.js";
 import { DataMap__Copy } from "./DataMap.js";
-import { addRangeInPlace, removeInPlace, contains as contains_1 } from "../fable_modules/fable-library-js.4.16.0/Array.js";
-import { printf, toText } from "../fable_modules/fable-library-js.4.16.0/String.js";
-import { rangeDouble } from "../fable_modules/fable-library-js.4.16.0/Range.js";
+import { addRangeInPlace, removeInPlace, contains as contains_1 } from "../fable_modules/fable-library-js.4.22.0/Array.js";
+import { printf, toText } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { rangeDouble } from "../fable_modules/fable-library-js.4.22.0/Range.js";
 import { boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
 import { checkValidCharacters } from "./Helper/Identifier.js";
 import { ArcTablesAux_applyIOMap, ArcTablesAux_getIOMap, ArcTables_$reflection, ArcTables } from "./Table/ArcTables.js";
-import { class_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
-import { Array_distinct } from "../fable_modules/fable-library-js.4.16.0/Seq2.js";
-import { FSharpRef } from "../fable_modules/fable-library-js.4.16.0/Types.js";
+import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { Array_distinct } from "../fable_modules/fable-library-js.4.22.0/Seq2.js";
+import { FSharpRef } from "../fable_modules/fable-library-js.4.22.0/Types.js";
 
 export class ArcAssay extends ArcTables {
     constructor(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
@@ -20,7 +20,7 @@ export class ArcAssay extends ArcTables {
         const performers_1 = defaultArg(performers, []);
         const comments_1 = defaultArg(comments, []);
         this["identifier@109"] = ((identifier_1 = identifier.trim(), (checkValidCharacters(identifier_1), identifier_1)));
-        this.investigation = void 0;
+        this.investigation = undefined;
         this["measurementType@114"] = measurementType;
         this["technologyType@115"] = technologyType;
         this["technologyPlatform@116"] = technologyPlatform;
@@ -535,7 +535,7 @@ export class ArcAssay extends ArcTables {
     }
     RemoveFromInvestigation() {
         const this$ = this;
-        this$.Investigation = void 0;
+        this$.Investigation = undefined;
     }
     UpdateReferenceByAssayFile(assay, onlyReplaceExisting) {
         const this$ = this;
@@ -606,7 +606,7 @@ export class ArcAssay extends ArcTables {
 }
 
 export function ArcAssay_$reflection() {
-    return class_type("ARCtrl.ArcAssay", void 0, ArcAssay, ArcTables_$reflection());
+    return class_type("ARCtrl.ArcAssay", undefined, ArcAssay, ArcTables_$reflection());
 }
 
 export function ArcAssay_$ctor_Z4900C8CC(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
@@ -623,7 +623,7 @@ export class ArcStudy extends ArcTables {
         const registeredAssayIdentifiers_1 = defaultArg(registeredAssayIdentifiers, []);
         const comments_1 = defaultArg(comments, []);
         this["identifier@536"] = ((identifier_1 = identifier.trim(), (checkValidCharacters(identifier_1), identifier_1)));
-        this.investigation = void 0;
+        this.investigation = undefined;
         this["title@541"] = title;
         this["description@542"] = description;
         this["submissionDate@543"] = submissionDate;
@@ -751,7 +751,7 @@ export class ArcStudy extends ArcTables {
     }
     get isEmpty() {
         const this$ = this;
-        return ((((((((equals(this$.Title, void 0) && equals(this$.Description, void 0)) && equals(this$.SubmissionDate, void 0)) && equals(this$.PublicReleaseDate, void 0)) && (this$.Publications.length === 0)) && (this$.Contacts.length === 0)) && (this$.StudyDesignDescriptors.length === 0)) && (this$.Tables.length === 0)) && (this$.RegisteredAssayIdentifiers.length === 0)) && (this$.Comments.length === 0);
+        return ((((((((equals(this$.Title, undefined) && equals(this$.Description, undefined)) && equals(this$.SubmissionDate, undefined)) && equals(this$.PublicReleaseDate, undefined)) && (this$.Publications.length === 0)) && (this$.Contacts.length === 0)) && (this$.StudyDesignDescriptors.length === 0)) && (this$.Tables.length === 0)) && (this$.RegisteredAssayIdentifiers.length === 0)) && (this$.Comments.length === 0);
     }
     static get FileName() {
         return "isa.study.xlsx";
@@ -1131,7 +1131,7 @@ export class ArcStudy extends ArcTables {
     }
     RemoveFromInvestigation() {
         const this$ = this;
-        this$.Investigation = void 0;
+        this$.Investigation = undefined;
     }
     Copy(copyInvestigationRef) {
         const this$ = this;
@@ -1284,7 +1284,7 @@ export class ArcStudy extends ArcTables {
 }
 
 export function ArcStudy_$reflection() {
-    return class_type("ARCtrl.ArcStudy", void 0, ArcStudy, ArcTables_$reflection());
+    return class_type("ARCtrl.ArcStudy", undefined, ArcStudy, ArcTables_$reflection());
 }
 
 export function ArcStudy_$ctor_64321D5B(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments) {
@@ -2257,7 +2257,7 @@ export class ArcInvestigation {
 }
 
 export function ArcInvestigation_$reflection() {
-    return class_type("ARCtrl.ArcInvestigation", void 0, ArcInvestigation);
+    return class_type("ARCtrl.ArcInvestigation", undefined, ArcInvestigation);
 }
 
 export function ArcInvestigation_$ctor_Z2ED5C612(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, registeredStudyIdentifiers, comments, remarks) {

package/Core/Comment.js

@@ -1,11 +1,13 @@
-import { map as map_1, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.16.0/Option.js";
-import { equals } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { map as map_1, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { equals } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
-import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.16.0/System.Text.js";
-import { printf, toText, join } from "../fable_modules/fable-library-js.4.16.0/String.js";
-import { ofArray, choose, map } from "../fable_modules/fable-library-js.4.16.0/List.js";
-import { Record, toString } from "../fable_modules/fable-library-js.4.16.0/Types.js";
-import { record_type, string_type, int32_type, class_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.22.0/System.Text.js";
+import { replace, printf, toText, join } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { ofArray, choose, map } from "../fable_modules/fable-library-js.4.22.0/List.js";
+import { Record, toString } from "../fable_modules/fable-library-js.4.22.0/Types.js";
+import { create, match } from "../fable_modules/fable-library-js.4.22.0/RegExp.js";
+import { Pattern_handleGroupPatterns } from "./Helper/Regex.js";
+import { record_type, string_type, int32_type, class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
 
 export class Comment$ {
     constructor(name, value) {
@@ -56,14 +58,19 @@ export class Comment$ {
         const this$ = this;
         const sb = StringBuilder_$ctor();
         StringBuilder__Append_Z721C83C5(sb, "Comment {");
-        StringBuilder__Append_Z721C83C5(sb, join(", ", map((tupledArg_1) => toText(printf("%s = %A"))(tupledArg_1[0])(tupledArg_1[1]), choose((tupledArg) => map_1((o) => [tupledArg[0], o], tupledArg[1]), ofArray([["Name", this$.Name], ["Value", this$.Value]])))));
+        StringBuilder__Append_Z721C83C5(sb, join(", ", map((tupledArg_1) => toText(printf("%s = \"%s\""))(tupledArg_1[0])(tupledArg_1[1]), choose((tupledArg) => map_1((o) => [tupledArg[0], o], tupledArg[1]), ofArray([["Name", this$.Name], ["Value", this$.Value]])))));
         StringBuilder__Append_Z721C83C5(sb, "}");
         return toString(sb);
     }
+    static fromString(s) {
+        const nameResult = match(create(Pattern_handleGroupPatterns("Name = \"[^\"]*\"")), s);
+        const valueResult = match(create(Pattern_handleGroupPatterns("Value = \"[^\"]*\"")), s);
+        return new Comment$(unwrap((nameResult != null) ? replace(replace(nameResult[0], "Name = ", ""), "\"", "") : undefined), unwrap((valueResult != null) ? replace(replace(valueResult[0], "Value = ", ""), "\"", "") : undefined));
+    }
 }
 
 export function Comment$_$reflection() {
-    return class_type("ARCtrl.Comment", void 0, Comment$);
+    return class_type("ARCtrl.Comment", undefined, Comment$);
 }
 
 export function Comment_$ctor_40457300(name, value) {

package/Core/CommentList.js

@@ -1,8 +1,8 @@
-import { exists, tryPick } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
-import { value } from "../fable_modules/fable-library-js.4.16.0/Option.js";
-import { ofSeq } from "../fable_modules/fable-library-js.4.16.0/Map.js";
+import { exists, tryPick } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { value } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { ofSeq } from "../fable_modules/fable-library-js.4.22.0/Map.js";
 import { ResizeArray_filter, ResizeArray_appendSingleton, ResizeArray_map, ResizeArray_choose } from "./Helper/Collections.js";
-import { equals, comparePrimitives } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { equals, comparePrimitives } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 
 /**
  * If a comment with the given key exists in the [], return its value, else return None
@@ -27,7 +27,7 @@ export function tryItem(key, comments) {
             case 0:
                 return c.Value;
             default:
-                return void 0;
+                return undefined;
         }
     }, comments);
 }
@@ -77,7 +77,7 @@ export function toMap(comments) {
             return [matchValue, c.Value];
         }
         else {
-            return void 0;
+            return undefined;
         }
     }, comments), {
         Compare: comparePrimitives,