@nfdi4plants/arctrl 1.0.0-beta.1 → 1.0.0-beta.2

package/ISA/ISA.Json/Decode.js

@@ -1,9 +1,9 @@
 import { fromString, string } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
-import { printf, toText } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
+import { printf, toText } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { ErrorReason } from "../../fable_modules/Thoth.Json.10.1.0/Types.fs.js";
-import { contains, exists } from "../../fable_modules/fable-library.4.1.4/Seq.js";
-import { stringHash } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { contains, exists } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { stringHash } from "../../fable_modules/fable-library.4.4.1/Util.js";
 
 export function isURI(s) {
     return true;

package/ISA/ISA.Json/Factor.js

@@ -2,14 +2,14 @@ import { Value } from "../ISA/JsonTypes/Value.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
 import { object as object_8, toString, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { array, object as object_9, string, float, int } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
 import { uri, fromJsonString } from "./Decode.js";
-import { equals, uncurry2 } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { equals, uncurry2 } from "../../fable_modules/fable-library.4.4.1/Util.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID, ConverterOptions_$ctor } from "./ConverterOptions.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { tryInclude } from "./GEncode.js";
 import { decoder as decoder_1, encoder } from "./Comment.js";
 import { Factor } from "../ISA/JsonTypes/Factor.js";

package/ISA/ISA.Json/GEncode.js

@@ -1,7 +1,7 @@
-import { value as value_1 } from "../../fable_modules/fable-library.4.1.4/Option.js";
-import { isIterable } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { value as value_1 } from "../../fable_modules/fable-library.4.4.1/Option.js";
+import { isIterable } from "../../fable_modules/fable-library.4.4.1/Util.js";
 import { nil, seq } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { map } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { map } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 
 /**
  * Try to encode the given object using the given encoder, or return Encode.nil if the object is null

package/ISA/ISA.Json/Investigation.js

@@ -1,9 +1,9 @@
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { toString, nil, object as object_24 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { empty as empty_1, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { empty as empty_1, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologySourceReference_decoder, OntologySourceReference_encoder } from "./Ontology.js";
@@ -114,8 +114,8 @@ export function Investigation_toStringLD(i) {
 }
 
 export function ArcInvestigation_fromJsonString(s) {
-    const arg = fromJsonString(uncurry2(Investigation_decoder(ConverterOptions_$ctor())), s);
-    return ArcInvestigation.fromInvestigation(arg);
+    const i = fromJsonString(uncurry2(Investigation_decoder(ConverterOptions_$ctor())), s);
+    return ArcInvestigation.fromInvestigation(i);
 }
 
 export function ArcInvestigation_toJsonString(a) {

package/ISA/ISA.Json/Material.js

@@ -1,12 +1,12 @@
 import { MaterialType } from "../ISA/JsonTypes/MaterialType.js";
 import { toString, object as object_10, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { list as list_1, object as object_11, string } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
 import { ErrorReason } from "../../fable_modules/Thoth.Json.10.1.0/Types.fs.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
@@ -14,7 +14,7 @@ import { hasUnknownFields, fromJsonString, uri } from "./Decode.js";
 import { MaterialAttribute } from "../ISA/JsonTypes/MaterialAttribute.js";
 import { Value_decoder, Value_encoder } from "./Factor.js";
 import { MaterialAttributeValue } from "../ISA/JsonTypes/MaterialAttributeValue.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { Material } from "../ISA/JsonTypes/Material.js";
 
 export function MaterialType_encoder(options, value) {

package/ISA/ISA.Json/Ontology.js

@@ -1,11 +1,11 @@
 import { AnnotationValue } from "../ISA/JsonTypes/AnnotationValue.js";
 import { toString, object as object_10, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { array, object as object_11, string, float, int } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { decoder as decoder_1, encoder } from "./Comment.js";
@@ -13,7 +13,7 @@ import { fromJsonString, uri } from "./Decode.js";
 import { OntologySourceReference } from "../ISA/JsonTypes/OntologySourceReference.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { OntologyAnnotation } from "../ISA/JsonTypes/OntologyAnnotation.js";
-import { unwrap } from "../../fable_modules/fable-library.4.1.4/Option.js";
+import { unwrap } from "../../fable_modules/fable-library.4.4.1/Option.js";
 
 export function AnnotationValue_encoder(options, value) {
     if (value instanceof AnnotationValue) {

package/ISA/ISA.Json/Person.js

@@ -1,11 +1,11 @@
-import { tryPick } from "../../fable_modules/fable-library.4.1.4/Array.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { tryPick } from "../../fable_modules/fable-library.4.4.1/Array.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { Person } from "../ISA/JsonTypes/Person.js";
 import { toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
@@ -116,8 +116,8 @@ export function genID(p) {
 
 export function encoder(options, oa) {
     let oa_1;
-    const arg = oa;
-    oa_1 = Person.setCommentFromORCID(arg);
+    const person = oa;
+    oa_1 = Person.setCommentFromORCID(person);
     return object_22(choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, nil)) {
@@ -174,15 +174,15 @@ export function encoder(options, oa) {
 export function decoder(options) {
     return (path_10) => ((v) => object_23((get$) => {
         let objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_19, decoder_1, objectArg_9, arg_21, decoder_2, objectArg_10;
-        let arg_22;
+        let person;
         let ID;
         const objectArg = get$.Optional;
         ID = objectArg.Field("@id", uri);
         let FirstName;
         const objectArg_1 = get$.Optional;
         FirstName = objectArg_1.Field("firstName", string);
-        arg_22 = (new Person(ID, void 0, (objectArg_2 = get$.Optional, objectArg_2.Field("lastName", string)), FirstName, (objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("email", string)), (objectArg_5 = get$.Optional, objectArg_5.Field("phone", string)), (objectArg_6 = get$.Optional, objectArg_6.Field("fax", string)), (objectArg_7 = get$.Optional, objectArg_7.Field("address", string)), (objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", string)), (arg_19 = ((decoder_1 = OntologyAnnotation_decoder(options), (path_8) => ((value_8) => array_1(uncurry2(decoder_1), path_8, value_8)))), (objectArg_9 = get$.Optional, objectArg_9.Field("roles", uncurry2(arg_19)))), (arg_21 = ((decoder_2 = decoder_3(options), (path_9) => ((value_9) => array_1(uncurry2(decoder_2), path_9, value_9)))), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", uncurry2(arg_21))))));
-        return Person.setOrcidFromComments(arg_22);
+        person = (new Person(ID, void 0, (objectArg_2 = get$.Optional, objectArg_2.Field("lastName", string)), FirstName, (objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("email", string)), (objectArg_5 = get$.Optional, objectArg_5.Field("phone", string)), (objectArg_6 = get$.Optional, objectArg_6.Field("fax", string)), (objectArg_7 = get$.Optional, objectArg_7.Field("address", string)), (objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", string)), (arg_19 = ((decoder_1 = OntologyAnnotation_decoder(options), (path_8) => ((value_8) => array_1(uncurry2(decoder_1), path_8, value_8)))), (objectArg_9 = get$.Optional, objectArg_9.Field("roles", uncurry2(arg_19)))), (arg_21 = ((decoder_2 = decoder_3(options), (path_9) => ((value_9) => array_1(uncurry2(decoder_2), path_9, value_9)))), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", uncurry2(arg_21))))));
+        return Person.setOrcidFromComments(person);
     }, path_10, v));
 }
 

package/ISA/ISA.Json/Process.js

@@ -1,10 +1,10 @@
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { ProtocolParameter_getNameText_Z3A4310A5 } from "../ISA/JsonTypes/ProtocolParameter.js";
 import { Value_getText_72E9EF0F } from "../ISA/JsonTypes/Value.js";
 import { list as list_2, toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { map, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { map, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { Protocol_decoder, Protocol_encoder, ProtocolParameter_decoder, ProtocolParameter_encoder } from "./Protocol.js";
@@ -16,7 +16,7 @@ import { uri, fromJsonString } from "./Decode.js";
 import { ProcessInput } from "../ISA/JsonTypes/ProcessInput.js";
 import { Data_decoder, Sample_decoder, Source_decoder, Source_encoder, Data_encoder, Sample_encoder } from "./Data.js";
 import { Material_decoder, Material_encoder } from "./Material.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
 import { ProcessOutput } from "../ISA/JsonTypes/ProcessOutput.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { decoder as decoder_4, encoder } from "./Comment.js";

package/ISA/ISA.Json/Protocol.js

@@ -1,17 +1,17 @@
-import { value as value_19 } from "../../fable_modules/fable-library.4.1.4/Option.js";
+import { value as value_19 } from "../../fable_modules/fable-library.4.4.1/Option.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { toString, nil, object as object_18 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
 import { list as list_1, string, object as object_19 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
 import { fromJsonString, uri } from "./Decode.js";
 import { ProtocolParameter } from "../ISA/JsonTypes/ProtocolParameter.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
-import { Result_Map } from "../../fable_modules/fable-library.4.1.4/Choice.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { Result_Map } from "../../fable_modules/fable-library.4.4.1/Choice.js";
 import { Component, Component_decomposeName_Z721C83C5 } from "../ISA/JsonTypes/Component.js";
 import { decoder as decoder_3, encoder } from "./Comment.js";
 import { Protocol } from "../ISA/JsonTypes/Protocol.js";

package/ISA/ISA.Json/Publication.js

@@ -1,8 +1,8 @@
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { toString, nil, object as object_12 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";

package/ISA/ISA.Json/Study.js

@@ -1,14 +1,14 @@
 import { toString, nil, object as object_36 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
 import { tryInclude } from "./GEncode.js";
 import { Sample_decoder, Source_decoder, Sample_encoder, Source_encoder } from "./Data.js";
 import { MaterialAttribute_decoder, MaterialAttribute_encoder, Material_decoder, Material_encoder } from "./Material.js";
 import { string, list as list_1, object as object_37 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
 import { StudyMaterials } from "../ISA/JsonTypes/StudyMaterials.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { decoder as decoder_10, encoder } from "./Publication.js";
 import { decoder as decoder_11, encoder as encoder_1 } from "./Person.js";
@@ -212,8 +212,8 @@ export function Study_toStringLD(s) {
 }
 
 export function ArcStudy_fromJsonString(s) {
-    const arg = fromJsonString(uncurry2(Study_decoder(ConverterOptions_$ctor())), s);
-    return ArcStudy.fromStudy(arg);
+    const s_1 = fromJsonString(uncurry2(Study_decoder(ConverterOptions_$ctor())), s);
+    return ArcStudy.fromStudy(s_1);
 }
 
 export function ArcStudy_toJsonString(a, assays) {

package/ISA/ISA.Json/Validation/Fable.js

@@ -1,10 +1,10 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { bool_type, option_type, array_type, record_type, string_type, obj_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { map } from "../../../fable_modules/fable-library.4.1.4/Array.js";
-import { singleton } from "../../../fable_modules/fable-library.4.1.4/AsyncBuilder.js";
-import { awaitPromise } from "../../../fable_modules/fable-library.4.1.4/Async.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { bool_type, option_type, array_type, record_type, string_type, obj_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { map } from "../../../fable_modules/fable-library.4.4.1/Array.js";
+import { singleton } from "../../../fable_modules/fable-library.4.4.1/AsyncBuilder.js";
+import { awaitPromise } from "../../../fable_modules/fable-library.4.4.1/Async.js";
 import * as JsonValidation from "../../../../../src/ISA/ISA.Json/Validation/JsonValidation.js";
-import { value } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { value } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 
 export class ValidationError extends Record {
     constructor(path, property, message, schema, instance, name, argument, stack) {

package/ISA/ISA.Json/Validation/JsonSchemaValidation.js

@@ -1,4 +1,4 @@
-import { singleton } from "../../../fable_modules/fable-library.4.1.4/AsyncBuilder.js";
+import { singleton } from "../../../fable_modules/fable-library.4.4.1/AsyncBuilder.js";
 import { validate } from "./Fable.js";
 import { ValidationResult, ValidationResult_OfJSchemaOutput_Z6EC48F6B } from "./ValidationResult.js";
 

package/ISA/ISA.Json/Validation/ValidationResult.js

@@ -1,5 +1,5 @@
-import { Union } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { union_type, array_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Union } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { union_type, array_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class ValidationResult extends Union {
     constructor(tag, fields) {

package/ISA/ISA.Spreadsheet/AnnotationTable/ArcTable.js

@@ -1,15 +1,15 @@
-import { iterateIndexed, length, ofArray, sortBy, collect, toArray, empty, tail, head, isEmpty, cons, singleton, fold, map, reverse } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { iterateIndexed, length, ofArray, sortBy, collect, toArray, empty, tail, head, isEmpty, cons, singleton, fold, map, reverse } from "../../../fable_modules/fable-library.4.4.1/List.js";
 import { tryParseReferenceColumnHeader } from "../../ISA/Regex.js";
-import { map as map_1, toList, tryFind } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
+import { map as map_1, toList, tryFind } from "../../../fable_modules/fable-library.4.4.1/Seq.js";
 import { toFsColumns, fixDeprecatedIOHeader, fromFsColumns } from "./CompositeColumn.js";
 import { ArcTable } from "../../ISA/ArcTypes/ArcTable.js";
-import { FsWorksheet } from "../../../fable_modules/FsSpreadsheet.5.0.0/FsWorksheet.fs.js";
-import { comparePrimitives } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { FsRangeAddress_$ctor_7E77A4A0 } from "../../../fable_modules/FsSpreadsheet.5.0.0/Ranges/FsRangeAddress.fs.js";
-import { FsAddress_$ctor_Z37302880 } from "../../../fable_modules/FsSpreadsheet.5.0.0/FsAddress.fs.js";
-import { Dictionary_tryGet } from "../../../fable_modules/FsSpreadsheet.5.0.0/Cells/FsCellsCollection.fs.js";
-import { addToDict } from "../../../fable_modules/fable-library.4.1.4/MapUtil.js";
-import { FsRangeBase__Cell_Z3407A44B } from "../../../fable_modules/FsSpreadsheet.5.0.0/Ranges/FsRangeBase.fs.js";
+import { FsWorksheet } from "../../../fable_modules/FsSpreadsheet.5.0.1/FsWorksheet.fs.js";
+import { comparePrimitives } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { FsRangeAddress_$ctor_7E77A4A0 } from "../../../fable_modules/FsSpreadsheet.5.0.1/Ranges/FsRangeAddress.fs.js";
+import { FsAddress_$ctor_Z37302880 } from "../../../fable_modules/FsSpreadsheet.5.0.1/FsAddress.fs.js";
+import { Dictionary_tryGet } from "../../../fable_modules/FsSpreadsheet.5.0.1/Cells/FsCellsCollection.fs.js";
+import { addToDict } from "../../../fable_modules/fable-library.4.4.1/MapUtil.js";
+import { FsRangeBase__Cell_Z3407A44B } from "../../../fable_modules/FsSpreadsheet.5.0.1/Ranges/FsRangeBase.fs.js";
 
 /**
  * Iterates over elements of the input list and groups adjacent elements.

package/ISA/ISA.Spreadsheet/AnnotationTable/CompositeCell.js

@@ -1,7 +1,7 @@
-import { singleton, ofArray, head, tail, isEmpty, map } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { singleton, ofArray, head, tail, isEmpty, map } from "../../../fable_modules/fable-library.4.4.1/List.js";
 import { CompositeCell } from "../../ISA/ArcTypes/CompositeCell.js";
-import { printf, toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { FsCell } from "../../../fable_modules/FsSpreadsheet.5.0.0/Cells/FsCell.fs.js";
+import { printf, toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { FsCell } from "../../../fable_modules/FsSpreadsheet.5.0.1/Cells/FsCell.fs.js";
 
 export function fromFsCells(cells) {
     const cellValues = map((c) => c.ValueAsString(), cells);

package/ISA/ISA.Spreadsheet/AnnotationTable/CompositeColumn.js

@@ -1,15 +1,15 @@
 import { CompositeHeader, IOType } from "../../ISA/ArcTypes/CompositeHeader.js";
-import { toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { toFsCells, fromFsCells } from "./CompositeHeader.js";
-import { singleton as singleton_1, ofArray, item, map } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { FsAddress__get_RowNumber } from "../../../fable_modules/FsSpreadsheet.5.0.0/FsAddress.fs.js";
-import { FsRangeAddress__get_LastAddress } from "../../../fable_modules/FsSpreadsheet.5.0.0/Ranges/FsRangeAddress.fs.js";
-import { FsRangeBase__get_RangeAddress } from "../../../fable_modules/FsSpreadsheet.5.0.0/Ranges/FsRangeBase.fs.js";
-import { singleton, append, toList, exists, map as map_1, delay, toArray } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
+import { singleton as singleton_1, ofArray, item, map } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { FsAddress__get_RowNumber } from "../../../fable_modules/FsSpreadsheet.5.0.1/FsAddress.fs.js";
+import { FsRangeAddress__get_LastAddress } from "../../../fable_modules/FsSpreadsheet.5.0.1/Ranges/FsRangeAddress.fs.js";
+import { FsRangeBase__get_RangeAddress } from "../../../fable_modules/FsSpreadsheet.5.0.1/Ranges/FsRangeBase.fs.js";
+import { singleton, append, toList, exists, map as map_1, delay, toArray } from "../../../fable_modules/fable-library.4.4.1/Seq.js";
 import { toFsCells as toFsCells_1, fromFsCells as fromFsCells_1 } from "./CompositeCell.js";
-import { rangeDouble } from "../../../fable_modules/fable-library.4.1.4/Range.js";
+import { rangeDouble } from "../../../fable_modules/fable-library.4.4.1/Range.js";
 import { CompositeColumn } from "../../ISA/ArcTypes/CompositeColumn.js";
-import { map as map_2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { map as map_2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 
 /**
  * Checks if the column header is a deprecated IO Header. If so, fixes it.

package/ISA/ISA.Spreadsheet/AnnotationTable/CompositeHeader.js

@@ -1,11 +1,11 @@
-import { printf, toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { singleton, tail, head, isEmpty, map } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { printf, toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { singleton, tail, head, isEmpty, map } from "../../../fable_modules/fable-library.4.4.1/List.js";
 import { OntologyAnnotation } from "../../ISA/JsonTypes/OntologyAnnotation.js";
 import { ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CInputColumnHeader$007C_$007C, tryParseComponentColumnHeader, tryParseCharacteristicColumnHeader, tryParseFactorColumnHeader, tryParseParameterColumnHeader, ActivePatterns_$007CUnitColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CTSRColumnHeader$007C_$007C } from "../../ISA/Regex.js";
 import { IOType, CompositeHeader } from "../../ISA/ArcTypes/CompositeHeader.js";
-import { FsCell } from "../../../fable_modules/FsSpreadsheet.5.0.0/Cells/FsCell.fs.js";
-import { toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { empty, singleton as singleton_1, append, delay, toList } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
+import { FsCell } from "../../../fable_modules/FsSpreadsheet.5.0.1/Cells/FsCell.fs.js";
+import { toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { empty, singleton as singleton_1, append, delay, toList } from "../../../fable_modules/fable-library.4.4.1/Seq.js";
 
 export function ActivePattern_mergeIDInfo(idSpace1, localID1, idSpace2, localID2) {
     if (idSpace1 !== idSpace2) {
@@ -190,7 +190,7 @@ export function ActivePattern_$007CTerm$007C_$007C(categoryParser, f, cells) {
 }
 
 export function ActivePattern_$007CParameter$007C_$007C(cells) {
-    const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseParameterColumnHeader, (arg) => (new CompositeHeader(3, [arg])), cells);
+    const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseParameterColumnHeader, (Item) => (new CompositeHeader(3, [Item])), cells);
     if (activePatternResult != null) {
         const r = activePatternResult;
         return r;
@@ -201,7 +201,7 @@ export function ActivePattern_$007CParameter$007C_$007C(cells) {
 }
 
 export function ActivePattern_$007CFactor$007C_$007C(cells) {
-    const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseFactorColumnHeader, (arg) => (new CompositeHeader(2, [arg])), cells);
+    const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseFactorColumnHeader, (Item) => (new CompositeHeader(2, [Item])), cells);
     if (activePatternResult != null) {
         const r = activePatternResult;
         return r;
@@ -212,7 +212,7 @@ export function ActivePattern_$007CFactor$007C_$007C(cells) {
 }
 
 export function ActivePattern_$007CCharacteristic$007C_$007C(cells) {
-    const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseCharacteristicColumnHeader, (arg) => (new CompositeHeader(1, [arg])), cells);
+    const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseCharacteristicColumnHeader, (Item) => (new CompositeHeader(1, [Item])), cells);
     if (activePatternResult != null) {
         const r = activePatternResult;
         return r;
@@ -223,7 +223,7 @@ export function ActivePattern_$007CCharacteristic$007C_$007C(cells) {
 }
 
 export function ActivePattern_$007CComponent$007C_$007C(cells) {
-    const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseComponentColumnHeader, (arg) => (new CompositeHeader(0, [arg])), cells);
+    const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseComponentColumnHeader, (Item) => (new CompositeHeader(0, [Item])), cells);
     if (activePatternResult != null) {
         const r = activePatternResult;
         return r;

package/ISA/ISA.Spreadsheet/ArcAssay.js

@@ -1,16 +1,16 @@
-import { FsWorksheet } from "../../fable_modules/FsSpreadsheet.5.0.0/FsWorksheet.fs.js";
-import { iterate, isEmpty as isEmpty_1, choose, tryHead, head, exists, map, singleton, append, delay, iterateIndexed } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { FsWorksheet } from "../../fable_modules/FsSpreadsheet.5.0.1/FsWorksheet.fs.js";
+import { iterate, isEmpty as isEmpty_1, choose, tryHead, head, exists, map, singleton, append, delay, iterateIndexed } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { SparseRowModule_tryGetValueAt, SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_writeToSheet } from "./Metadata/SparseTable.js";
 import { fromRows as fromRows_1, toRows as toRows_1 } from "./Metadata/Assays.js";
-import { empty, isEmpty, toArray, ofArray, singleton as singleton_1 } from "../../fable_modules/fable-library.4.1.4/List.js";
+import { empty, isEmpty, toArray, ofArray, singleton as singleton_1 } from "../../fable_modules/fable-library.4.4.1/List.js";
 import { fromRows as fromRows_2, toRows as toRows_2 } from "./Metadata/Contacts.js";
-import { getEnumerator } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { getEnumerator } from "../../fable_modules/fable-library.4.4.1/Util.js";
 import { ArcAssay } from "../ISA/ArcTypes/ArcTypes.js";
 import { createMissingIdentifier } from "../ISA/Identifier.js";
-import { defaultArg } from "../../fable_modules/fable-library.4.1.4/Option.js";
-import { printf, toConsole } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { defaultArg } from "../../fable_modules/fable-library.4.4.1/Option.js";
+import { printf, toConsole } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { toFsWorksheet, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
-import { FsWorkbook } from "../../fable_modules/FsSpreadsheet.5.0.0/FsWorkbook.fs.js";
+import { FsWorkbook } from "../../fable_modules/FsSpreadsheet.5.0.1/FsWorkbook.fs.js";
 
 export function toMetadataSheet(assay) {
     let assay_1;
@@ -90,9 +90,9 @@ export function fromMetadataSheet(sheet) {
                         case 0:
                             return ArcAssay.create(createMissingIdentifier());
                         default: {
-                            const arg = toArray(contacts_2);
-                            const arg_1 = defaultArg(tryHead(assays_2), ArcAssay.create(createMissingIdentifier()));
-                            return ArcAssay.setPerformers(arg, arg_1);
+                            const performers = toArray(contacts_2);
+                            const assay = defaultArg(tryHead(assays_2), ArcAssay.create(createMissingIdentifier()));
+                            return ArcAssay.setPerformers(performers, assay);
                         }
                     }
                 }
@@ -138,9 +138,9 @@ export function toFsWorkbook(assay) {
     const doc = new FsWorkbook();
     const metaDataSheet = toMetadataSheet(assay);
     doc.AddWorksheet(metaDataSheet);
-    iterate((arg_1) => {
-        const arg = toFsWorksheet(arg_1);
-        doc.AddWorksheet(arg);
+    iterate((arg) => {
+        const sheet = toFsWorksheet(arg);
+        doc.AddWorksheet(sheet);
     }, assay.Tables);
     return doc;
 }