@nfdi4plants/arctrl 1.0.0-beta.1 → 1.0.0-beta.2

package/ISA/ISA/JsonTypes/ProcessParameterValue.js

@@ -1,11 +1,11 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { bind, defaultArg, map } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { bind, defaultArg, map } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { ProtocolParameter__SetCategory_Z4C0FE73C, ProtocolParameter_create_Z6C54B221, ProtocolParameter__MapCategory_Z69DD836A, ProtocolParameter__get_TryNameText, ProtocolParameter_$reflection, ProtocolParameter__get_NameText } from "./ProtocolParameter.js";
-import { record_type, option_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, option_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Value_$reflection } from "./Value.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class ProcessParameterValue extends Record {
     constructor(Category, Value, Unit) {

package/ISA/ISA/JsonTypes/ProcessSequence.js

@@ -1,12 +1,12 @@
-import { List_groupBy, List_distinct } from "../../../fable_modules/fable-library.4.1.4/Seq2.js";
-import { singleton, zip, map, empty, collect, concat, filter, choose } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { value as value_3, defaultArg, bind } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { arrayHash, equalArrays, comparePrimitives, safeHash, equals, stringHash } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { List_groupBy, List_distinct } from "../../../fable_modules/fable-library.4.4.1/Seq2.js";
+import { singleton, zip, map, empty, collect, concat, filter, choose } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { value as value_4, defaultArg, bind } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { arrayHash, equalArrays, comparePrimitives, safeHash, equals, stringHash } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { Process_updateProtocol, Process_getMaterials_716E708F, Process_getSamples_716E708F, Process_getSources_716E708F, Process_getData_716E708F, Process_getUnits_716E708F, Process_getFactors_716E708F, Process_tryGetOutputsWithFactorBy, Process_tryGetOutputsWithCharacteristicBy, Process_tryGetInputsWithCharacteristicBy, Process_getCharacteristics_716E708F, Process_getParameters_716E708F, Process_tryGetOutputsWithParameterBy, Process_tryGetInputsWithParameterBy } from "./Process.js";
-import { FSharpSet__Contains, ofList } from "../../../fable_modules/fable-library.4.1.4/Set.js";
+import { FSharpSet__Contains, ofList } from "../../../fable_modules/fable-library.4.4.1/Set.js";
 import { ProcessOutput__get_Name, ProcessOutput_getName_11830B70 } from "./ProcessOutput.js";
 import { ProcessInput__get_Name, ProcessInput_getName_102B6859 } from "./ProcessInput.js";
-import { FSharpMap__TryFind, ofList as ofList_1 } from "../../../fable_modules/fable-library.4.1.4/Map.js";
+import { FSharpMap__TryFind, ofList as ofList_1 } from "../../../fable_modules/fable-library.4.4.1/Map.js";
 
 /**
  * Returns the names of the protocols the given processes impelement
@@ -67,14 +67,14 @@ export function filterByProtocolName(protocolName, processSequence) {
  * If the processes contain a process implementing the given parameter, return the list of input files together with their according parameter values of this parameter
  */
 export function getInputsWithParameterBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetInputsWithParameterBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetInputsWithParameterBy(predicate, p), processSequence));
 }
 
 /**
  * If the processes contain a process implementing the given parameter, return the list of output files together with their according parameter values of this parameter
  */
 export function getOutputsWithParameterBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetOutputsWithParameterBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetOutputsWithParameterBy(predicate, p), processSequence));
 }
 
 /**
@@ -101,21 +101,21 @@ export function getCharacteristics(processSequence) {
  * If the processes contain a process implementing the given parameter, return the list of input files together with their according parameter values of this parameter
  */
 export function getInputsWithCharacteristicBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetInputsWithCharacteristicBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetInputsWithCharacteristicBy(predicate, p), processSequence));
 }
 
 /**
  * If the processes contain a process implementing the given parameter, return the list of output files together with their according parameter values of this parameter
  */
 export function getOutputsWithCharacteristicBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetOutputsWithCharacteristicBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetOutputsWithCharacteristicBy(predicate, p), processSequence));
 }
 
 /**
  * If the processes contain a process implementing the given factor, return the list of output files together with their according factor values of this factor
  */
 export function getOutputsWithFactorBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetOutputsWithFactorBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetOutputsWithFactorBy(predicate, p), processSequence));
 }
 
 /**
@@ -153,7 +153,7 @@ export function getFinalOutputs(processSequence) {
  * Returns the initial inputs final outputs of the processSequence, to which no processPoints
  */
 export function getRootInputOf(processSequence, sample) {
-    const mappings = ofList_1(map((tupledArg) => [tupledArg[0], map((tuple_1) => tuple_1[1], tupledArg[1])], List_groupBy((tuple) => tuple[0], collect((p) => List_distinct(zip(map(ProcessOutput__get_Name, value_3(p.Outputs)), map(ProcessInput__get_Name, value_3(p.Inputs))), {
+    const mappings = ofList_1(map((tupledArg) => [tupledArg[0], map((tuple_1) => tuple_1[1], tupledArg[1])], List_groupBy((tuple) => tuple[0], collect((p) => List_distinct(zip(map(ProcessOutput__get_Name, value_4(p.Outputs)), map(ProcessInput__get_Name, value_4(p.Inputs))), {
         Equals: equalArrays,
         GetHashCode: arrayHash,
     }), processSequence), {
@@ -184,7 +184,7 @@ export function getRootInputOf(processSequence, sample) {
  * Returns the final outputs of the processSequence, which point to no further nodes
  */
 export function getFinalOutputsOf(processSequence, sample) {
-    const mappings = ofList_1(map((tupledArg) => [tupledArg[0], map((tuple_1) => tuple_1[1], tupledArg[1])], List_groupBy((tuple) => tuple[0], collect((p) => List_distinct(zip(map(ProcessInput__get_Name, value_3(p.Inputs)), map(ProcessOutput__get_Name, value_3(p.Outputs))), {
+    const mappings = ofList_1(map((tupledArg) => [tupledArg[0], map((tuple_1) => tuple_1[1], tupledArg[1])], List_groupBy((tuple) => tuple[0], collect((p) => List_distinct(zip(map(ProcessInput__get_Name, value_4(p.Inputs)), map(ProcessOutput__get_Name, value_4(p.Outputs))), {
         Equals: equalArrays,
         GetHashCode: arrayHash,
     }), processSequence), {
@@ -250,6 +250,6 @@ export function getMaterials(processSequence) {
 }
 
 export function updateProtocols(protocols, processSequence) {
-    return map((arg_1) => Process_updateProtocol(protocols, arg_1), processSequence);
+    return map((p) => Process_updateProtocol(protocols, p), processSequence);
 }
 

package/ISA/ISA/JsonTypes/Protocol.js

@@ -1,14 +1,14 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
 import { ProtocolParameter_$reflection } from "./ProtocolParameter.js";
 import { Component_$reflection } from "./Component.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { empty, filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { empty, filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { defaultArg, map as map_1 } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { defaultArg, map as map_1 } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 
 export class Protocol extends Record {
     constructor(ID, Name, ProtocolType, Description, Uri, Version, Parameters, Components, Comments) {

package/ISA/ISA/JsonTypes/ProtocolParameter.js

@@ -1,7 +1,7 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { bind, map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { bind, map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault } from "../Helper.js";
 
 export class ProtocolParameter extends Record {
@@ -53,7 +53,7 @@ export function ProtocolParameter_toString_Z3A4310A5(pp) {
         TermName: "",
         TermSourceREF: "",
     };
-    return defaultArg(map((arg) => OntologyAnnotation.toString(arg), pp.ParameterName), value);
+    return defaultArg(map((oa) => OntologyAnnotation.toString(oa), pp.ParameterName), value);
 }
 
 /**

package/ISA/ISA/JsonTypes/Publication.js

@@ -1,11 +1,11 @@
-import { filter, map, tryFind, exists, singleton, append } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { filter, map, tryFind, exists, singleton, append } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { map as map_1 } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { map as map_1 } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_mapDefault } from "../Helper.js";
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
 import { Comment$_$reflection } from "./Comment.js";
 
@@ -94,8 +94,8 @@ export class Publication extends Record {
     }
     Copy() {
         const this$ = this;
-        const arg_5 = map_1((array) => map_2((c) => c.Copy(), array), this$.Comments);
-        return Publication.make(this$.PubMedID, this$.DOI, this$.Authors, this$.Title, this$.Status, arg_5);
+        const comments = map_1((array) => map_2((c) => c.Copy(), array), this$.Comments);
+        return Publication.make(this$.PubMedID, this$.DOI, this$.Authors, this$.Title, this$.Status, comments);
     }
 }
 

package/ISA/ISA/JsonTypes/Sample.js

@@ -1,8 +1,8 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { append, choose, empty, length } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { append, choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 import { FactorValue_$reflection } from "./FactorValue.js";
 import { Source_$reflection } from "./Source.js";

package/ISA/ISA/JsonTypes/Source.js

@@ -1,8 +1,8 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { choose, empty, length } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 
 export class Source extends Record {

package/ISA/ISA/JsonTypes/Study.js

@@ -1,5 +1,5 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Publication_$reflection } from "./Publication.js";
 import { Person_$reflection } from "./Person.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
@@ -10,19 +10,19 @@ import { Assay_update_722A269D, Assay_updateProtocols, Assay_getMaterials_722A26
 import { Factor_$reflection } from "./Factor.js";
 import { MaterialAttribute_$reflection } from "./MaterialAttribute.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { collect, empty, filter, map, singleton, append, exists } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { stringHash, safeHash, structuralHash, equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { map2 as map2_2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { collect, empty, filter, map, singleton, append, exists } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { stringHash, safeHash, structuralHash, equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { map2 as map2_2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Dict_tryFind, Dict_ofSeqWithMerge, Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { map as map_1, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { map as map_1, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault, Update_UpdateOptions, Option_mapDefault } from "../Helper.js";
 import { updateProtocols, getMaterials, getSamples, getSources, getUnits, getFactors, getCharacteristics, getProtocols } from "./ProcessSequence.js";
-import { List_distinct } from "../../../fable_modules/fable-library.4.1.4/Seq2.js";
+import { List_distinct } from "../../../fable_modules/fable-library.4.4.1/Seq2.js";
 import { Source_$reflection } from "./Source.js";
 import { Sample_$reflection } from "./Sample.js";
 import { AssayMaterials_getMaterials_35E61745 } from "./AssayMaterials.js";
 import { Material_$reflection } from "./Material.js";
-import { toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class Study extends Record {
     constructor(ID, FileName, Identifier, Title, Description, SubmissionDate, PublicReleaseDate, Publications, Contacts, StudyDesignDescriptors, Protocols, Materials, ProcessSequence, Assays, Factors, CharacteristicCategories, UnitCategories, Comments) {
@@ -248,10 +248,10 @@ export function Study_getProtocols_7312BC8B(study) {
     const list1 = assaysProtocols;
     const list2 = processSequenceProtocols;
     try {
-        const map1 = Dict_ofSeqWithMerge((arg_1, arg_1_1) => {
+        const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
             const this$ = updateOptions;
-            const recordType_1 = arg_1;
-            const recordType_2 = arg_1_1;
+            const recordType_1 = recordType_;
+            const recordType_2 = recordType__1;
             switch (this$.tag) {
                 case 2:
                     return makeRecord(Protocol_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -263,10 +263,10 @@ export function Study_getProtocols_7312BC8B(study) {
                     return recordType_2;
             }
         }, map((v) => [mapping_1(v), v], list1));
-        const map2 = Dict_ofSeqWithMerge((arg_2, arg_3) => {
+        const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
             const this$_1 = updateOptions;
-            const recordType_1_1 = arg_2;
-            const recordType_2_1 = arg_3;
+            const recordType_1_1 = recordType__2;
+            const recordType_2_1 = recordType__3;
             switch (this$_1.tag) {
                 case 2:
                     return makeRecord(Protocol_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -321,10 +321,10 @@ export function Study_getProtocols_7312BC8B(study) {
 ${err.message}`);
     }
     try {
-        const map1_1 = Dict_ofSeqWithMerge((arg_6, arg_1_2) => {
+        const map1_1 = Dict_ofSeqWithMerge((recordType__6, recordType__1_1) => {
             const this$_3 = updateOptions_2;
-            const recordType_1_3 = arg_6;
-            const recordType_2_3 = arg_1_2;
+            const recordType_1_3 = recordType__6;
+            const recordType_2_3 = recordType__1_1;
             switch (this$_3.tag) {
                 case 2:
                     return makeRecord(Protocol_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_3), getRecordFields(recordType_2_3)));
@@ -336,10 +336,10 @@ ${err.message}`);
                     return recordType_2_3;
             }
         }, map((v_2) => [mapping_6(v_2), v_2], list1_1));
-        const map2_1 = Dict_ofSeqWithMerge((arg_2_1, arg_3_1) => {
+        const map2_1 = Dict_ofSeqWithMerge((recordType__2_1, recordType__3_1) => {
             const this$_4 = updateOptions_2;
-            const recordType_1_4 = arg_2_1;
-            const recordType_2_4 = arg_3_1;
+            const recordType_1_4 = recordType__2_1;
+            const recordType_2_4 = recordType__3_1;
             switch (this$_4.tag) {
                 case 2:
                     return makeRecord(Protocol_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_4), getRecordFields(recordType_2_4)));
@@ -442,10 +442,10 @@ export function Study_getSources_7312BC8B(study) {
     const list1 = assaysSources;
     const list2 = processSequenceSources;
     try {
-        const map1 = Dict_ofSeqWithMerge((arg_1, arg_1_1) => {
+        const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
             const this$ = updateOptions;
-            const recordType_1 = arg_1;
-            const recordType_2 = arg_1_1;
+            const recordType_1 = recordType_;
+            const recordType_2 = recordType__1;
             switch (this$.tag) {
                 case 2:
                     return makeRecord(Source_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -457,10 +457,10 @@ export function Study_getSources_7312BC8B(study) {
                     return recordType_2;
             }
         }, map((v) => [mapping_1(v), v], list1));
-        const map2 = Dict_ofSeqWithMerge((arg_2, arg_3) => {
+        const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
             const this$_1 = updateOptions;
-            const recordType_1_1 = arg_2;
-            const recordType_2_1 = arg_3;
+            const recordType_1_1 = recordType__2;
+            const recordType_2_1 = recordType__3;
             switch (this$_1.tag) {
                 case 2:
                     return makeRecord(Source_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -515,10 +515,10 @@ export function Study_getSources_7312BC8B(study) {
 ${err.message}`);
     }
     try {
-        const map1_1 = Dict_ofSeqWithMerge((arg_6, arg_1_2) => {
+        const map1_1 = Dict_ofSeqWithMerge((recordType__6, recordType__1_1) => {
             const this$_3 = updateOptions_2;
-            const recordType_1_3 = arg_6;
-            const recordType_2_3 = arg_1_2;
+            const recordType_1_3 = recordType__6;
+            const recordType_2_3 = recordType__1_1;
             switch (this$_3.tag) {
                 case 2:
                     return makeRecord(Source_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_3), getRecordFields(recordType_2_3)));
@@ -530,10 +530,10 @@ ${err.message}`);
                     return recordType_2_3;
             }
         }, map((v_2) => [mapping_6(v_2), v_2], list1_1));
-        const map2_1 = Dict_ofSeqWithMerge((arg_2_1, arg_3_1) => {
+        const map2_1 = Dict_ofSeqWithMerge((recordType__2_1, recordType__3_1) => {
             const this$_4 = updateOptions_2;
-            const recordType_1_4 = arg_2_1;
-            const recordType_2_4 = arg_3_1;
+            const recordType_1_4 = recordType__2_1;
+            const recordType_2_4 = recordType__3_1;
             switch (this$_4.tag) {
                 case 2:
                     return makeRecord(Source_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_4), getRecordFields(recordType_2_4)));
@@ -606,10 +606,10 @@ export function Study_getSamples_7312BC8B(study) {
     const list1 = assaysSamples;
     const list2 = processSequenceSamples;
     try {
-        const map1 = Dict_ofSeqWithMerge((arg_1, arg_1_1) => {
+        const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
             const this$ = updateOptions;
-            const recordType_1 = arg_1;
-            const recordType_2 = arg_1_1;
+            const recordType_1 = recordType_;
+            const recordType_2 = recordType__1;
             switch (this$.tag) {
                 case 2:
                     return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -621,10 +621,10 @@ export function Study_getSamples_7312BC8B(study) {
                     return recordType_2;
             }
         }, map((v) => [mapping_1(v), v], list1));
-        const map2 = Dict_ofSeqWithMerge((arg_2, arg_3) => {
+        const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
             const this$_1 = updateOptions;
-            const recordType_1_1 = arg_2;
-            const recordType_2_1 = arg_3;
+            const recordType_1_1 = recordType__2;
+            const recordType_2_1 = recordType__3;
             switch (this$_1.tag) {
                 case 2:
                     return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -679,10 +679,10 @@ export function Study_getSamples_7312BC8B(study) {
 ${err.message}`);
     }
     try {
-        const map1_1 = Dict_ofSeqWithMerge((arg_6, arg_1_2) => {
+        const map1_1 = Dict_ofSeqWithMerge((recordType__6, recordType__1_1) => {
             const this$_3 = updateOptions_2;
-            const recordType_1_3 = arg_6;
-            const recordType_2_3 = arg_1_2;
+            const recordType_1_3 = recordType__6;
+            const recordType_2_3 = recordType__1_1;
             switch (this$_3.tag) {
                 case 2:
                     return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_3), getRecordFields(recordType_2_3)));
@@ -694,10 +694,10 @@ ${err.message}`);
                     return recordType_2_3;
             }
         }, map((v_2) => [mapping_6(v_2), v_2], list1_1));
-        const map2_1 = Dict_ofSeqWithMerge((arg_2_1, arg_3_1) => {
+        const map2_1 = Dict_ofSeqWithMerge((recordType__2_1, recordType__3_1) => {
             const this$_4 = updateOptions_2;
-            const recordType_1_4 = arg_2_1;
-            const recordType_2_4 = arg_3_1;
+            const recordType_1_4 = recordType__2_1;
+            const recordType_2_4 = recordType__3_1;
             switch (this$_4.tag) {
                 case 2:
                     return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_4), getRecordFields(recordType_2_4)));
@@ -758,7 +758,7 @@ ${err_1.message}`);
  */
 export function Study_getMaterials_7312BC8B(study) {
     const processSequenceMaterials = getMaterials(Study_getProcesses_7312BC8B(study));
-    const assaysMaterials = collect((arg_2) => AssayMaterials_getMaterials_35E61745(Assay_getMaterials_722A269D(arg_2)), Study_getAssays_7312BC8B(study));
+    const assaysMaterials = collect((arg) => AssayMaterials_getMaterials_35E61745(Assay_getMaterials_722A269D(arg)), Study_getAssays_7312BC8B(study));
     let materials;
     const updateOptions_2 = new Update_UpdateOptions(3, []);
     const mapping_6 = (s_2) => s_2.Name;
@@ -771,10 +771,10 @@ export function Study_getMaterials_7312BC8B(study) {
     const list1 = assaysMaterials;
     const list2 = processSequenceMaterials;
     try {
-        const map1 = Dict_ofSeqWithMerge((arg_3, arg_1_1) => {
+        const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
             const this$ = updateOptions;
-            const recordType_1 = arg_3;
-            const recordType_2 = arg_1_1;
+            const recordType_1 = recordType_;
+            const recordType_2 = recordType__1;
             switch (this$.tag) {
                 case 2:
                     return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -786,10 +786,10 @@ export function Study_getMaterials_7312BC8B(study) {
                     return recordType_2;
             }
         }, map((v) => [mapping_1(v), v], list1));
-        const map2 = Dict_ofSeqWithMerge((arg_2_1, arg_3_1) => {
+        const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
             const this$_1 = updateOptions;
-            const recordType_1_1 = arg_2_1;
-            const recordType_2_1 = arg_3_1;
+            const recordType_1_1 = recordType__2;
+            const recordType_2_1 = recordType__3;
             switch (this$_1.tag) {
                 case 2:
                     return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -844,10 +844,10 @@ export function Study_getMaterials_7312BC8B(study) {
 ${err.message}`);
     }
     try {
-        const map1_1 = Dict_ofSeqWithMerge((arg_6, arg_1_2) => {
+        const map1_1 = Dict_ofSeqWithMerge((recordType__6, recordType__1_1) => {
             const this$_3 = updateOptions_2;
-            const recordType_1_3 = arg_6;
-            const recordType_2_3 = arg_1_2;
+            const recordType_1_3 = recordType__6;
+            const recordType_2_3 = recordType__1_1;
             switch (this$_3.tag) {
                 case 2:
                     return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_3), getRecordFields(recordType_2_3)));
@@ -859,10 +859,10 @@ ${err.message}`);
                     return recordType_2_3;
             }
         }, map((v_2) => [mapping_6(v_2), v_2], list1_1));
-        const map2_1 = Dict_ofSeqWithMerge((arg_2_2, arg_3_2) => {
+        const map2_1 = Dict_ofSeqWithMerge((recordType__2_1, recordType__3_1) => {
             const this$_4 = updateOptions_2;
-            const recordType_1_4 = arg_2_2;
-            const recordType_2_4 = arg_3_2;
+            const recordType_1_4 = recordType__2_1;
+            const recordType_2_4 = recordType__3_1;
             switch (this$_4.tag) {
                 case 2:
                     return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_4), getRecordFields(recordType_2_4)));
@@ -927,7 +927,7 @@ export function Study_update_7312BC8B(study) {
         let Materials;
         const v = Study_getMaterials_7312BC8B(study);
         Materials = Option_fromValueWithDefault(StudyMaterials_get_empty(), v);
-        const Assays = map_1((list) => map((arg_3) => ((arg_2) => Assay_updateProtocols(protocols, arg_2))(Assay_update_722A269D(arg_3)), list), study.Assays);
+        const Assays = map_1((list) => map((arg) => ((assay_1) => Assay_updateProtocols(protocols, assay_1))(Assay_update_722A269D(arg)), list), study.Assays);
         const Protocols = Option_fromValueWithDefault(empty(), protocols);
         const Factors = Option_fromValueWithDefault(empty(), Study_getFactors_7312BC8B(study));
         const CharacteristicCategories = Option_fromValueWithDefault(empty(), Study_getCharacteristics_7312BC8B(study));

package/ISA/ISA/JsonTypes/StudyMaterials.js

@@ -1,10 +1,10 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Source_$reflection } from "./Source.js";
-import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Sample_$reflection } from "./Sample.js";
 import { Material_$reflection } from "./Material.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { empty } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { empty } from "../../../fable_modules/fable-library.4.4.1/List.js";
 
 export class StudyMaterials extends Record {
     constructor(Sources, Samples, OtherMaterials) {

package/ISA/ISA/JsonTypes/Value.js

@@ -1,11 +1,11 @@
-import { Union, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Union, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { union_type, string_type, float64_type, int32_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { parse } from "../../../fable_modules/fable-library.4.1.4/Double.js";
-import { parse as parse_1 } from "../../../fable_modules/fable-library.4.1.4/Int32.js";
-import { map, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { union_type, string_type, float64_type, int32_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { parse } from "../../../fable_modules/fable-library.4.4.1/Double.js";
+import { parse as parse_1 } from "../../../fable_modules/fable-library.4.4.1/Int32.js";
+import { map, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { AnnotationValue_toString_Z6FAD7738 } from "./AnnotationValue.js";
 
 export class Value extends Union {

package/ISA/ISA/Regex.js

@@ -1,6 +1,6 @@
-import { create, match } from "../../fable_modules/fable-library.4.1.4/RegExp.js";
-import { value as value_1, map, some } from "../../fable_modules/fable-library.4.1.4/Option.js";
-import { parse } from "../../fable_modules/fable-library.4.1.4/Int32.js";
+import { create, match } from "../../fable_modules/fable-library.4.4.1/RegExp.js";
+import { value as value_1, map, some } from "../../fable_modules/fable-library.4.4.1/Option.js";
+import { parse } from "../../fable_modules/fable-library.4.4.1/Int32.js";
 
 export const Pattern_ExcelNumberFormat = `"(?<${"numberFormat"}>(.*?))"`;
 

package/ISA/ISA.Json/Assay.js

@@ -1,13 +1,13 @@
 import { toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
 import { tryInclude } from "./GEncode.js";
 import { Data_decoder, Data_encoder, Sample_decoder, Sample_encoder } from "./Data.js";
 import { MaterialAttribute_decoder, MaterialAttribute_encoder, Material_decoder, Material_encoder } from "./Material.js";
 import { string, list as list_1, object as object_23 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
 import { AssayMaterials } from "../ISA/JsonTypes/AssayMaterials.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
 import { Process_decoder, Process_encoder } from "./Process.js";
@@ -105,8 +105,8 @@ export function Assay_toStringLD(a) {
 }
 
 export function ArcAssay_fromJsonString(s) {
-    const arg = fromJsonString(uncurry2(Assay_decoder(ConverterOptions_$ctor())), s);
-    return ArcAssay.fromAssay(arg);
+    const a = fromJsonString(uncurry2(Assay_decoder(ConverterOptions_$ctor())), s);
+    return ArcAssay.fromAssay(a);
 }
 
 export function ArcAssay_toJsonString(a) {

package/ISA/ISA.Json/Comment.js

@@ -1,10 +1,10 @@
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
-import { value as value_13 } from "../../fable_modules/fable-library.4.1.4/Option.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { value as value_13 } from "../../fable_modules/fable-library.4.4.1/Option.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { toString, nil, object as object_6 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { string, object as object_7 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";

package/ISA/ISA.Json/ConverterOptions.js

@@ -1,4 +1,4 @@
-import { class_type } from "../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { class_type } from "../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class ConverterOptions {
     constructor() {

package/ISA/ISA.Json/Data.js

@@ -1,18 +1,18 @@
 import { DataFile } from "../ISA/JsonTypes/DataFile.js";
 import { toString, object as object_10, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { list as list_1, object as object_11, string } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
 import { ErrorReason } from "../../fable_modules/Thoth.Json.10.1.0/Types.fs.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { decoder as decoder_3, encoder } from "./Comment.js";
 import { fromJsonString, uri, hasUnknownFields } from "./Decode.js";
 import { Data } from "../ISA/JsonTypes/Data.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { MaterialAttributeValue_decoder, MaterialAttributeValue_encoder } from "./Material.js";
 import { Source } from "../ISA/JsonTypes/Source.js";
 import { FactorValue_decoder, FactorValue_encoder } from "./Factor.js";