@nfdi4plants/arctrl 1.0.0-beta.1 → 1.0.0-beta.2

package/ISA/ISA/JsonTypes/AssayMaterials.js

@@ -1,9 +1,9 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Sample_$reflection } from "./Sample.js";
-import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Material_$reflection } from "./Material.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { empty } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { empty } from "../../../fable_modules/fable-library.4.4.1/List.js";
 
 export class AssayMaterials extends Record {
     constructor(Samples, OtherMaterials) {

package/ISA/ISA/JsonTypes/ColumnIndex.js

@@ -1,10 +1,10 @@
-import { tryParse } from "../../../fable_modules/fable-library.4.1.4/Int32.js";
-import { FSharpRef } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { tryParse } from "../../../fable_modules/fable-library.4.4.1/Int32.js";
+import { FSharpRef } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { Comment$ } from "./Comment.js";
-import { value, bind } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { value as value_1, bind } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { tryItem } from "./CommentList.js";
-import { append } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { append } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { OntologyAnnotation } from "./OntologyAnnotation.js";
 import { Factor } from "./Factor.js";
 import { MaterialAttribute_fromString_Z2304A83C } from "./MaterialAttribute.js";
@@ -28,8 +28,8 @@ function tryInt(str) {
 export const orderName = "ColumnIndex";
 
 export function createOrderComment(index) {
-    const arg_1 = int32ToString(index);
-    return Comment$.fromString(orderName, arg_1);
+    const value = int32ToString(index);
+    return Comment$.fromString(orderName, value);
 }
 
 export function tryGetIndex(comments) {
@@ -81,11 +81,11 @@ export function ARCtrl_ISA_OntologyAnnotation__OntologyAnnotation_fromStringWith
 }
 
 export function ARCtrl_ISA_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_Z4C0FE73C(f) {
-    return value(tryGetOntologyAnnotationIndex(f));
+    return value_1(tryGetOntologyAnnotationIndex(f));
 }
 
 export function ARCtrl_ISA_OntologyAnnotation__OntologyAnnotation_GetColumnIndex(this$) {
-    return value(tryGetOntologyAnnotationIndex(this$));
+    return value_1(tryGetOntologyAnnotationIndex(this$));
 }
 
 export function ARCtrl_ISA_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_Z4C0FE73C(f) {
@@ -112,11 +112,11 @@ export function ARCtrl_ISA_Factor__Factor_fromStringWithColumnIndex_Static(name,
 }
 
 export function ARCtrl_ISA_Factor__Factor_getColumnIndex_Static_Z55333BD7(f) {
-    return value(tryGetFactorIndex(f));
+    return value_1(tryGetFactorIndex(f));
 }
 
 export function ARCtrl_ISA_Factor__Factor_GetColumnIndex(this$) {
-    return value(tryGetFactorIndex(this$));
+    return value_1(tryGetFactorIndex(this$));
 }
 
 export function ARCtrl_ISA_Factor__Factor_tryGetColumnIndex_Static_Z55333BD7(f) {
@@ -128,11 +128,11 @@ export function ARCtrl_ISA_Factor__Factor_TryGetColumnIndex(this$) {
 }
 
 export function ARCtrl_ISA_FactorValue__FactorValue_getColumnIndex_Static_Z2623397E(f) {
-    return value(tryGetFactorColumnIndex(f));
+    return value_1(tryGetFactorColumnIndex(f));
 }
 
 export function ARCtrl_ISA_FactorValue__FactorValue_GetColumnIndex(this$) {
-    return value(tryGetFactorColumnIndex(this$));
+    return value_1(tryGetFactorColumnIndex(this$));
 }
 
 export function ARCtrl_ISA_FactorValue__FactorValue_tryGetColumnIndex_Static_Z2623397E(f) {
@@ -151,11 +151,11 @@ export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_fromStringWithCo
 }
 
 export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z5F39696D(m) {
-    return value(tryGetCharacteristicIndex(m));
+    return value_1(tryGetCharacteristicIndex(m));
 }
 
 export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_GetColumnIndex(this$) {
-    return value(tryGetCharacteristicIndex(this$));
+    return value_1(tryGetCharacteristicIndex(this$));
 }
 
 export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z5F39696D(m) {
@@ -167,11 +167,11 @@ export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_TryGetColumnInde
 }
 
 export function ARCtrl_ISA_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_43A5B238(m) {
-    return value(tryGetCharacteristicColumnIndex(m));
+    return value_1(tryGetCharacteristicColumnIndex(m));
 }
 
 export function ARCtrl_ISA_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex(this$) {
-    return value(tryGetCharacteristicColumnIndex(this$));
+    return value_1(tryGetCharacteristicColumnIndex(this$));
 }
 
 export function ARCtrl_ISA_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_43A5B238(m) {
@@ -190,11 +190,11 @@ export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_fromStringWithCo
 }
 
 export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z3A4310A5(p) {
-    return value(tryGetParameterIndex(p));
+    return value_1(tryGetParameterIndex(p));
 }
 
 export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_GetColumnIndex(this$) {
-    return value(tryGetParameterIndex(this$));
+    return value_1(tryGetParameterIndex(this$));
 }
 
 export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z3A4310A5(p) {
@@ -206,11 +206,11 @@ export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_TryGetColumnInde
 }
 
 export function ARCtrl_ISA_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_5FD7232D(p) {
-    return value(tryGetParameterColumnIndex(p));
+    return value_1(tryGetParameterColumnIndex(p));
 }
 
 export function ARCtrl_ISA_ProcessParameterValue__ProcessParameterValue_GetColumnIndex(this$) {
-    return value(tryGetParameterColumnIndex(this$));
+    return value_1(tryGetParameterColumnIndex(this$));
 }
 
 export function ARCtrl_ISA_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_5FD7232D(p) {
@@ -229,11 +229,11 @@ export function ARCtrl_ISA_Component__Component_fromStringWithColumnIndex_Static
 }
 
 export function ARCtrl_ISA_Component__Component_getColumnIndex_Static_Z609B8895(f) {
-    return value(tryGetComponentIndex(f));
+    return value_1(tryGetComponentIndex(f));
 }
 
 export function ARCtrl_ISA_Component__Component_GetColumnIndex(this$) {
-    return value(tryGetComponentIndex(this$));
+    return value_1(tryGetComponentIndex(this$));
 }
 
 export function ARCtrl_ISA_Component__Component_tryGetColumnIndex_Static_Z609B8895(f) {

package/ISA/ISA/JsonTypes/Comment.js

@@ -1,6 +1,6 @@
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { int32_type, record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { int32_type, record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class Comment$ extends Record {
     constructor(ID, Name, Value) {

package/ISA/ISA/JsonTypes/CommentList.js

@@ -1,7 +1,7 @@
-import { map, append, choose, tryPick } from "../../../fable_modules/fable-library.4.1.4/Array.js";
-import { value } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { ofArray } from "../../../fable_modules/fable-library.4.1.4/Map.js";
-import { equals, comparePrimitives } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { map, append, choose, tryPick } from "../../../fable_modules/fable-library.4.4.1/Array.js";
+import { value } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { ofArray } from "../../../fable_modules/fable-library.4.4.1/Map.js";
+import { equals, comparePrimitives } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 
 /**
  * If a comment with the given key exists in the [], return its value, else return None

package/ISA/ISA/JsonTypes/Component.js

@@ -1,12 +1,12 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Value as Value_1, Value_fromString_Z721C83C5, Value__get_Text, Value_$reflection } from "./Value.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { create, match } from "../../../fable_modules/fable-library.4.1.4/RegExp.js";
+import { create, match } from "../../../fable_modules/fable-library.4.4.1/RegExp.js";
 import { AnnotationValue } from "./AnnotationValue.js";
-import { map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault } from "../Helper.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class Component extends Record {
     constructor(ComponentName, ComponentValue, ComponentUnit, ComponentType) {
@@ -72,14 +72,14 @@ export function Component_decomposeName_Z721C83C5(name) {
     const unitr = match(create("(?<value>[\\d\\.]+) (?<unit>.+) \\((?<ontology>[^(]*:[^)]*)\\)"), name);
     if (unitr != null) {
         let oa;
-        const arg = (unitr.groups && unitr.groups.ontology) || "";
-        oa = OntologyAnnotation.fromTermAnnotation(arg);
+        const termAnnotation = (unitr.groups && unitr.groups.ontology) || "";
+        oa = OntologyAnnotation.fromTermAnnotation(termAnnotation);
         return [Value_fromString_Z721C83C5((unitr.groups && unitr.groups.value) || ""), new OntologyAnnotation(oa.ID, new AnnotationValue(0, [(unitr.groups && unitr.groups.unit) || ""]), oa.TermSourceREF, oa.TermAccessionNumber, oa.Comments)];
     }
     else if (r != null) {
         let oa_1;
-        const arg_2 = (r.groups && r.groups.ontology) || "";
-        oa_1 = OntologyAnnotation.fromTermAnnotation(arg_2);
+        const termAnnotation_1 = (r.groups && r.groups.ontology) || "";
+        oa_1 = OntologyAnnotation.fromTermAnnotation(termAnnotation_1);
         return [new Value_1(0, [new OntologyAnnotation(oa_1.ID, new AnnotationValue(0, [Value__get_Text(Value_fromString_Z721C83C5((r.groups && r.groups.value) || ""))]), oa_1.TermSourceREF, oa_1.TermAccessionNumber, oa_1.Comments)]), void 0];
     }
     else {
@@ -111,14 +111,14 @@ export function Component_fromOptions(value, unit, header) {
  * Get ISATab string entries from an ISAJson Component object
  */
 export function Component_toString_Z609B8895(c) {
-    let oa;
+    let oa_1;
     const value = {
         TermAccessionNumber: "",
         TermName: "",
         TermSourceREF: "",
     };
-    oa = defaultArg(map((arg) => OntologyAnnotation.toString(arg), c.ComponentType), value);
-    return [defaultArg(c.ComponentName, ""), oa];
+    oa_1 = defaultArg(map((oa) => OntologyAnnotation.toString(oa), c.ComponentType), value);
+    return [defaultArg(c.ComponentName, ""), oa_1];
 }
 
 export function Component__get_NameText(this$) {

package/ISA/ISA/JsonTypes/Data.js

@@ -1,9 +1,9 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { DataFile_$reflection, DataFile__get_AsString } from "./DataFile.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 
 export class Data extends Record {
     constructor(ID, Name, DataType, Comments) {

package/ISA/ISA/JsonTypes/DataFile.js

@@ -1,5 +1,5 @@
-import { Union } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { union_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Union } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { union_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class DataFile extends Union {
     constructor(tag, fields) {

package/ISA/ISA/JsonTypes/Factor.js

@@ -1,12 +1,12 @@
 import { OntologyAnnotation_$reflection, OntologyAnnotation } from "./OntologyAnnotation.js";
-import { map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault } from "../Helper.js";
-import { filter, map as map_1, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { filter, map as map_1, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Comment$_$reflection } from "./Comment.js";
 
 export class Factor extends Record {
@@ -28,9 +28,9 @@ export class Factor extends Record {
     }
     static fromString(name, term, source, accession, comments) {
         const oa = OntologyAnnotation.fromString(term, source, accession, unwrap(comments));
-        const arg_1 = Option_fromValueWithDefault("", name);
-        const arg_2 = Option_fromValueWithDefault(OntologyAnnotation.empty, oa);
-        return Factor.make(void 0, arg_1, arg_2, void 0);
+        const name_1 = Option_fromValueWithDefault("", name);
+        const factorType = Option_fromValueWithDefault(OntologyAnnotation.empty, oa);
+        return Factor.make(void 0, name_1, factorType, void 0);
     }
     static toString(factor) {
         const value = {
@@ -38,7 +38,7 @@ export class Factor extends Record {
             TermName: "",
             TermSourceREF: "",
         };
-        return defaultArg(map((arg) => OntologyAnnotation.toString(arg), factor.FactorType), value);
+        return defaultArg(map((oa) => OntologyAnnotation.toString(oa), factor.FactorType), value);
     }
     get NameText() {
         const this$ = this;
@@ -109,8 +109,8 @@ export class Factor extends Record {
     }
     Copy() {
         const this$ = this;
-        const arg_3 = map((array) => map_2((c) => c.Copy(), array), this$.Comments);
-        return Factor.make(this$.ID, this$.Name, this$.FactorType, arg_3);
+        const comments = map((array) => map_2((c) => c.Copy(), array), this$.Comments);
+        return Factor.make(this$.ID, this$.Name, this$.FactorType, comments);
     }
     Print() {
         const this$ = this;

package/ISA/ISA/JsonTypes/FactorValue.js

@@ -1,11 +1,11 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { defaultArg, map } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { defaultArg, map } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Factor, Factor_$reflection } from "./Factor.js";
 import { Value_$reflection } from "./Value.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class FactorValue extends Record {
     constructor(ID, Category, Value, Unit) {

package/ISA/ISA/JsonTypes/Investigation.js

@@ -1,16 +1,16 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologySourceReference_$reflection } from "./OntologySourceReference.js";
 import { Publication_$reflection } from "./Publication.js";
 import { Person_$reflection } from "./Person.js";
 import { Study_update_7312BC8B, Study_$reflection } from "./Study.js";
 import { Remark_$reflection, Comment$_$reflection } from "./Comment.js";
-import { map, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { map as map_1, empty } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { map, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { map as map_1, empty } from "../../../fable_modules/fable-library.4.4.1/List.js";
 import { Option_mapDefault } from "../Helper.js";
-import { map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class Investigation extends Record {
     constructor(ID, FileName, Identifier, Title, Description, SubmissionDate, PublicReleaseDate, OntologySourceReferences, Publications, Contacts, Studies, Comments, Remarks) {

package/ISA/ISA/JsonTypes/Material.js

@@ -1,9 +1,9 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { choose, empty, length } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { MaterialType_$reflection, MaterialType__get_AsString } from "./MaterialType.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 
 export class Material extends Record {

package/ISA/ISA/JsonTypes/MaterialAttribute.js

@@ -1,7 +1,7 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { bind, map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { bind, map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault } from "../Helper.js";
 
 export class MaterialAttribute extends Record {
@@ -53,7 +53,7 @@ export function MaterialAttribute_toString_Z5F39696D(ma) {
         TermName: "",
         TermSourceREF: "",
     };
-    return defaultArg(map((arg) => OntologyAnnotation.toString(arg), ma.CharacteristicType), value);
+    return defaultArg(map((oa) => OntologyAnnotation.toString(oa), ma.CharacteristicType), value);
 }
 
 /**

package/ISA/ISA/JsonTypes/MaterialAttributeValue.js

@@ -1,11 +1,11 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { bind, defaultArg, map } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { bind, defaultArg, map } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { MaterialAttribute__SetCategory_Z4C0FE73C, MaterialAttribute_create_Z6C54B221, MaterialAttribute__MapCategory_Z69DD836A, MaterialAttribute__get_TryNameText, MaterialAttribute_$reflection, MaterialAttribute__get_NameText } from "./MaterialAttribute.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Value_$reflection } from "./Value.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class MaterialAttributeValue extends Record {
     constructor(ID, Category, Value, Unit) {

package/ISA/ISA/JsonTypes/MaterialType.js

@@ -1,5 +1,5 @@
-import { Union } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { union_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Union } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { union_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class MaterialType extends Union {
     constructor(tag, fields) {

package/ISA/ISA/JsonTypes/OntologyAnnotation.js

@@ -1,13 +1,13 @@
-import { value as value_4, map, defaultArg, bind, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { value as value_4, map, defaultArg, bind, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Pattern_TermAnnotationShortPattern, ActivePatterns_$007CRegex$007C_$007C, tryParseTermAnnotation } from "../Regex.js";
-import { equals, stringHash, int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { equals, stringHash, int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { AnnotationValue_$reflection, AnnotationValue_toString_Z6FAD7738, AnnotationValue_fromString_Z721C83C5 } from "./AnnotationValue.js";
-import { filter, map as map_1, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { filter, map as map_1, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
 import { Option_mapDefault } from "../Helper.js";
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Comment$_$reflection } from "./Comment.js";
 
 export class OntologyAnnotation extends Record {
@@ -70,8 +70,8 @@ export class OntologyAnnotation extends Record {
         return `${"http://purl.obolibrary.org/obo/"}${termSourceRef}_${localTAN}`;
     }
     static fromString(termName, tsr, tan, comments) {
-        const arg_1 = map(AnnotationValue_fromString_Z721C83C5, termName);
-        return OntologyAnnotation.make(void 0, arg_1, tsr, tan, comments);
+        const name = map(AnnotationValue_fromString_Z721C83C5, termName);
+        return OntologyAnnotation.make(void 0, name, tsr, tan, comments);
     }
     static fromTermAnnotation(termAnnotation) {
         const r = value_4(tryParseTermAnnotation(termAnnotation));
@@ -196,8 +196,8 @@ export class OntologyAnnotation extends Record {
     }
     Copy() {
         const this$ = this;
-        const arg_4 = map((array) => map_2((c) => c.Copy(), array), this$.Comments);
-        return OntologyAnnotation.make(this$.ID, this$.Name, this$.TermSourceREF, this$.TermAccessionNumber, arg_4);
+        const comments = map((array) => map_2((c) => c.Copy(), array), this$.Comments);
+        return OntologyAnnotation.make(this$.ID, this$.Name, this$.TermSourceREF, this$.TermAccessionNumber, comments);
     }
     Print() {
         const this$ = this;

package/ISA/ISA/JsonTypes/OntologySourceReference.js

@@ -1,11 +1,11 @@
-import { filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
 import { Option_mapDefault } from "../Helper.js";
-import { map as map_1 } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { map as map_1 } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Comment$_$reflection } from "./Comment.js";
 
 export class OntologySourceReference extends Record {
@@ -74,8 +74,8 @@ export class OntologySourceReference extends Record {
     }
     Copy() {
         const this$ = this;
-        const arg_4 = map_1((array) => map_2((c) => c.Copy(), array), this$.Comments);
-        return OntologySourceReference.make(this$.Description, this$.File, this$.Name, this$.Version, arg_4);
+        const comments = map_1((array) => map_2((c) => c.Copy(), array), this$.Comments);
+        return OntologySourceReference.make(this$.Description, this$.File, this$.Name, this$.Version, comments);
     }
 }
 

package/ISA/ISA/JsonTypes/Person.js

@@ -1,13 +1,13 @@
-import { append as append_1, tryPick, map2, map, tryFind } from "../../../fable_modules/fable-library.4.1.4/Array.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { singleton, append } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { append as append_1, tryPick, map2, map, tryFind } from "../../../fable_modules/fable-library.4.4.1/Array.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { singleton, append } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
 import { Option_fromValueWithDefault, Option_mapDefault } from "../Helper.js";
-import { endsWith } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { map as map_1, defaultArg, value as value_2 } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { endsWith } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { map as map_1, defaultArg, value as value_2 } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Comment$_$reflection, Comment$ } from "./Comment.js";
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
 
 export class Person extends Record {
@@ -126,8 +126,8 @@ export class Person extends Record {
     Copy() {
         const this$ = this;
         const nextComments = map_1((array) => map((c) => c.Copy(), array), this$.Comments);
-        const arg_10 = map_1((array_1) => map((c_1) => c_1.Copy(), array_1), this$.Roles);
-        return Person.make(this$.ID, this$.ORCID, this$.LastName, this$.FirstName, this$.MidInitials, this$.EMail, this$.Phone, this$.Fax, this$.Address, this$.Affiliation, arg_10, nextComments);
+        const roles = map_1((array_1) => map((c_1) => c_1.Copy(), array_1), this$.Roles);
+        return Person.make(this$.ID, this$.ORCID, this$.LastName, this$.FirstName, this$.MidInitials, this$.EMail, this$.Phone, this$.Fax, this$.Address, this$.Affiliation, roles, nextComments);
     }
 }
 

package/ISA/ISA/JsonTypes/Process.js

@@ -1,20 +1,20 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { zip, tryPick, map as map_1, tryFind, append, collect, choose, empty, length } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { map, value as value_4, bind, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { zip, tryPick, map as map_1, tryFind, append, collect, choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { map, value as value_4, bind, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Protocol_$reflection } from "./Protocol.js";
 import { ProcessParameterValue_$reflection } from "./ProcessParameterValue.js";
 import { ProcessInput_tryMaterial_102B6859, ProcessInput_trySample_102B6859, ProcessInput_tryData_102B6859, ProcessInput_trySource_102B6859, ProcessInput_tryGetCharacteristicValues_102B6859, ProcessInput_$reflection } from "./ProcessInput.js";
 import { ProcessOutput_tryGetFactorValues_11830B70, ProcessOutput_tryGetCharacteristicValues_11830B70, ProcessOutput_$reflection } from "./ProcessOutput.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { create, match } from "../../../fable_modules/fable-library.4.1.4/RegExp.js";
-import { parse } from "../../../fable_modules/fable-library.4.1.4/Int32.js";
-import { List_distinct } from "../../../fable_modules/fable-library.4.1.4/Seq2.js";
-import { safeHash, equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { create, match } from "../../../fable_modules/fable-library.4.4.1/RegExp.js";
+import { parse } from "../../../fable_modules/fable-library.4.4.1/Int32.js";
+import { List_distinct } from "../../../fable_modules/fable-library.4.4.1/Seq2.js";
+import { safeHash, equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { ProtocolParameter_get_empty } from "./ProtocolParameter.js";
 import { Update_UpdateOptions, Option_fromValueWithDefault } from "../Helper.js";
-import { map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
 
 export class Process extends Record {
@@ -160,7 +160,7 @@ export function Process_getCharacteristics_716E708F(p) {
  * Returns the factor values of the samples of the process
  */
 export function Process_getFactorValues_716E708F(p) {
-    return List_distinct(collect((arg_1) => defaultArg(ProcessOutput_tryGetFactorValues_11830B70(arg_1), empty()), defaultArg(p.Outputs, empty())), {
+    return List_distinct(collect((arg) => defaultArg(ProcessOutput_tryGetFactorValues_11830B70(arg), empty()), defaultArg(p.Outputs, empty())), {
         Equals: equals,
         GetHashCode: safeHash,
     });

package/ISA/ISA/JsonTypes/ProcessInput.js

@@ -1,12 +1,12 @@
-import { Union, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Union, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { Source_create_7A281ED9, Source_getUnits_Z28BE5327, Source_setCharacteristicValues, Source_get_empty, Source_$reflection } from "./Source.js";
 import { Sample_create_E50ED22, Sample_getUnits_Z29207F1E, Sample_setCharacteristicValues, Sample_$reflection } from "./Sample.js";
 import { Data_create_Z326CF519, Data_$reflection } from "./Data.js";
 import { Material_create_Z31BE6CDD, Material_getUnits_Z42815C11, Material_setCharacteristicValues, Material_$reflection } from "./Material.js";
-import { union_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { unwrap, map, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { empty, choose } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { union_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { unwrap, map, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { empty, choose } from "../../../fable_modules/fable-library.4.4.1/List.js";
 import { DataFile } from "./DataFile.js";
 
 export class ProcessInput extends Union {

package/ISA/ISA/JsonTypes/ProcessOutput.js

@@ -1,11 +1,11 @@
-import { Union, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Union, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { Sample_create_E50ED22, Sample_getUnits_Z29207F1E, Sample_setFactorValues, Sample_get_empty, Sample_$reflection } from "./Sample.js";
 import { Data_create_Z326CF519, Data_$reflection } from "./Data.js";
 import { Material_create_Z31BE6CDD, Material_getUnits_Z42815C11, Material_$reflection } from "./Material.js";
-import { union_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { unwrap, map, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { empty, choose } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { union_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { unwrap, map, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { empty, choose } from "../../../fable_modules/fable-library.4.4.1/List.js";
 import { DataFile } from "./DataFile.js";
 
 export class ProcessOutput extends Union {