@nfdi4plants/arctrl 1.0.0-alpha9 → 1.0.0-beta.2

package/ISA/ISA/JsonTypes/Study.js

@@ -1,5 +1,5 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Publication_$reflection } from "./Publication.js";
 import { Person_$reflection } from "./Person.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
@@ -10,19 +10,19 @@ import { Assay_update_722A269D, Assay_updateProtocols, Assay_getMaterials_722A26
 import { Factor_$reflection } from "./Factor.js";
 import { MaterialAttribute_$reflection } from "./MaterialAttribute.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { collect, empty, filter, map, singleton, append, exists } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { stringHash, safeHash, structuralHash, equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { map2 as map2_2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { collect, empty, filter, map, singleton, append, exists } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { stringHash, safeHash, structuralHash, equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { map2 as map2_2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Dict_tryFind, Dict_ofSeqWithMerge, Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { map as map_1, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { map as map_1, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault, Update_UpdateOptions, Option_mapDefault } from "../Helper.js";
 import { updateProtocols, getMaterials, getSamples, getSources, getUnits, getFactors, getCharacteristics, getProtocols } from "./ProcessSequence.js";
-import { List_distinct } from "../../../fable_modules/fable-library.4.1.4/Seq2.js";
+import { List_distinct } from "../../../fable_modules/fable-library.4.4.1/Seq2.js";
 import { Source_$reflection } from "./Source.js";
 import { Sample_$reflection } from "./Sample.js";
 import { AssayMaterials_getMaterials_35E61745 } from "./AssayMaterials.js";
 import { Material_$reflection } from "./Material.js";
-import { toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class Study extends Record {
     constructor(ID, FileName, Identifier, Title, Description, SubmissionDate, PublicReleaseDate, Publications, Contacts, StudyDesignDescriptors, Protocols, Materials, ProcessSequence, Assays, Factors, CharacteristicCategories, UnitCategories, Comments) {
@@ -248,10 +248,10 @@ export function Study_getProtocols_7312BC8B(study) {
     const list1 = assaysProtocols;
     const list2 = processSequenceProtocols;
     try {
-        const map1 = Dict_ofSeqWithMerge((arg_1, arg_1_1) => {
+        const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
             const this$ = updateOptions;
-            const recordType_1 = arg_1;
-            const recordType_2 = arg_1_1;
+            const recordType_1 = recordType_;
+            const recordType_2 = recordType__1;
             switch (this$.tag) {
                 case 2:
                     return makeRecord(Protocol_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -263,10 +263,10 @@ export function Study_getProtocols_7312BC8B(study) {
                     return recordType_2;
             }
         }, map((v) => [mapping_1(v), v], list1));
-        const map2 = Dict_ofSeqWithMerge((arg_2, arg_3) => {
+        const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
             const this$_1 = updateOptions;
-            const recordType_1_1 = arg_2;
-            const recordType_2_1 = arg_3;
+            const recordType_1_1 = recordType__2;
+            const recordType_2_1 = recordType__3;
             switch (this$_1.tag) {
                 case 2:
                     return makeRecord(Protocol_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -321,10 +321,10 @@ export function Study_getProtocols_7312BC8B(study) {
 ${err.message}`);
     }
     try {
-        const map1_1 = Dict_ofSeqWithMerge((arg_6, arg_1_2) => {
+        const map1_1 = Dict_ofSeqWithMerge((recordType__6, recordType__1_1) => {
             const this$_3 = updateOptions_2;
-            const recordType_1_3 = arg_6;
-            const recordType_2_3 = arg_1_2;
+            const recordType_1_3 = recordType__6;
+            const recordType_2_3 = recordType__1_1;
             switch (this$_3.tag) {
                 case 2:
                     return makeRecord(Protocol_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_3), getRecordFields(recordType_2_3)));
@@ -336,10 +336,10 @@ ${err.message}`);
                     return recordType_2_3;
             }
         }, map((v_2) => [mapping_6(v_2), v_2], list1_1));
-        const map2_1 = Dict_ofSeqWithMerge((arg_2_1, arg_3_1) => {
+        const map2_1 = Dict_ofSeqWithMerge((recordType__2_1, recordType__3_1) => {
             const this$_4 = updateOptions_2;
-            const recordType_1_4 = arg_2_1;
-            const recordType_2_4 = arg_3_1;
+            const recordType_1_4 = recordType__2_1;
+            const recordType_2_4 = recordType__3_1;
             switch (this$_4.tag) {
                 case 2:
                     return makeRecord(Protocol_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_4), getRecordFields(recordType_2_4)));
@@ -442,10 +442,10 @@ export function Study_getSources_7312BC8B(study) {
     const list1 = assaysSources;
     const list2 = processSequenceSources;
     try {
-        const map1 = Dict_ofSeqWithMerge((arg_1, arg_1_1) => {
+        const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
             const this$ = updateOptions;
-            const recordType_1 = arg_1;
-            const recordType_2 = arg_1_1;
+            const recordType_1 = recordType_;
+            const recordType_2 = recordType__1;
             switch (this$.tag) {
                 case 2:
                     return makeRecord(Source_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -457,10 +457,10 @@ export function Study_getSources_7312BC8B(study) {
                     return recordType_2;
             }
         }, map((v) => [mapping_1(v), v], list1));
-        const map2 = Dict_ofSeqWithMerge((arg_2, arg_3) => {
+        const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
             const this$_1 = updateOptions;
-            const recordType_1_1 = arg_2;
-            const recordType_2_1 = arg_3;
+            const recordType_1_1 = recordType__2;
+            const recordType_2_1 = recordType__3;
             switch (this$_1.tag) {
                 case 2:
                     return makeRecord(Source_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -515,10 +515,10 @@ export function Study_getSources_7312BC8B(study) {
 ${err.message}`);
     }
     try {
-        const map1_1 = Dict_ofSeqWithMerge((arg_6, arg_1_2) => {
+        const map1_1 = Dict_ofSeqWithMerge((recordType__6, recordType__1_1) => {
             const this$_3 = updateOptions_2;
-            const recordType_1_3 = arg_6;
-            const recordType_2_3 = arg_1_2;
+            const recordType_1_3 = recordType__6;
+            const recordType_2_3 = recordType__1_1;
             switch (this$_3.tag) {
                 case 2:
                     return makeRecord(Source_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_3), getRecordFields(recordType_2_3)));
@@ -530,10 +530,10 @@ ${err.message}`);
                     return recordType_2_3;
             }
         }, map((v_2) => [mapping_6(v_2), v_2], list1_1));
-        const map2_1 = Dict_ofSeqWithMerge((arg_2_1, arg_3_1) => {
+        const map2_1 = Dict_ofSeqWithMerge((recordType__2_1, recordType__3_1) => {
             const this$_4 = updateOptions_2;
-            const recordType_1_4 = arg_2_1;
-            const recordType_2_4 = arg_3_1;
+            const recordType_1_4 = recordType__2_1;
+            const recordType_2_4 = recordType__3_1;
             switch (this$_4.tag) {
                 case 2:
                     return makeRecord(Source_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_4), getRecordFields(recordType_2_4)));
@@ -606,10 +606,10 @@ export function Study_getSamples_7312BC8B(study) {
     const list1 = assaysSamples;
     const list2 = processSequenceSamples;
     try {
-        const map1 = Dict_ofSeqWithMerge((arg_1, arg_1_1) => {
+        const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
             const this$ = updateOptions;
-            const recordType_1 = arg_1;
-            const recordType_2 = arg_1_1;
+            const recordType_1 = recordType_;
+            const recordType_2 = recordType__1;
             switch (this$.tag) {
                 case 2:
                     return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -621,10 +621,10 @@ export function Study_getSamples_7312BC8B(study) {
                     return recordType_2;
             }
         }, map((v) => [mapping_1(v), v], list1));
-        const map2 = Dict_ofSeqWithMerge((arg_2, arg_3) => {
+        const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
             const this$_1 = updateOptions;
-            const recordType_1_1 = arg_2;
-            const recordType_2_1 = arg_3;
+            const recordType_1_1 = recordType__2;
+            const recordType_2_1 = recordType__3;
             switch (this$_1.tag) {
                 case 2:
                     return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -679,10 +679,10 @@ export function Study_getSamples_7312BC8B(study) {
 ${err.message}`);
     }
     try {
-        const map1_1 = Dict_ofSeqWithMerge((arg_6, arg_1_2) => {
+        const map1_1 = Dict_ofSeqWithMerge((recordType__6, recordType__1_1) => {
             const this$_3 = updateOptions_2;
-            const recordType_1_3 = arg_6;
-            const recordType_2_3 = arg_1_2;
+            const recordType_1_3 = recordType__6;
+            const recordType_2_3 = recordType__1_1;
             switch (this$_3.tag) {
                 case 2:
                     return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_3), getRecordFields(recordType_2_3)));
@@ -694,10 +694,10 @@ ${err.message}`);
                     return recordType_2_3;
             }
         }, map((v_2) => [mapping_6(v_2), v_2], list1_1));
-        const map2_1 = Dict_ofSeqWithMerge((arg_2_1, arg_3_1) => {
+        const map2_1 = Dict_ofSeqWithMerge((recordType__2_1, recordType__3_1) => {
             const this$_4 = updateOptions_2;
-            const recordType_1_4 = arg_2_1;
-            const recordType_2_4 = arg_3_1;
+            const recordType_1_4 = recordType__2_1;
+            const recordType_2_4 = recordType__3_1;
             switch (this$_4.tag) {
                 case 2:
                     return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_4), getRecordFields(recordType_2_4)));
@@ -758,7 +758,7 @@ ${err_1.message}`);
  */
 export function Study_getMaterials_7312BC8B(study) {
     const processSequenceMaterials = getMaterials(Study_getProcesses_7312BC8B(study));
-    const assaysMaterials = collect((arg_2) => AssayMaterials_getMaterials_35E61745(Assay_getMaterials_722A269D(arg_2)), Study_getAssays_7312BC8B(study));
+    const assaysMaterials = collect((arg) => AssayMaterials_getMaterials_35E61745(Assay_getMaterials_722A269D(arg)), Study_getAssays_7312BC8B(study));
     let materials;
     const updateOptions_2 = new Update_UpdateOptions(3, []);
     const mapping_6 = (s_2) => s_2.Name;
@@ -771,10 +771,10 @@ export function Study_getMaterials_7312BC8B(study) {
     const list1 = assaysMaterials;
     const list2 = processSequenceMaterials;
     try {
-        const map1 = Dict_ofSeqWithMerge((arg_3, arg_1_1) => {
+        const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
             const this$ = updateOptions;
-            const recordType_1 = arg_3;
-            const recordType_2 = arg_1_1;
+            const recordType_1 = recordType_;
+            const recordType_2 = recordType__1;
             switch (this$.tag) {
                 case 2:
                     return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -786,10 +786,10 @@ export function Study_getMaterials_7312BC8B(study) {
                     return recordType_2;
             }
         }, map((v) => [mapping_1(v), v], list1));
-        const map2 = Dict_ofSeqWithMerge((arg_2_1, arg_3_1) => {
+        const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
             const this$_1 = updateOptions;
-            const recordType_1_1 = arg_2_1;
-            const recordType_2_1 = arg_3_1;
+            const recordType_1_1 = recordType__2;
+            const recordType_2_1 = recordType__3;
             switch (this$_1.tag) {
                 case 2:
                     return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -844,10 +844,10 @@ export function Study_getMaterials_7312BC8B(study) {
 ${err.message}`);
     }
     try {
-        const map1_1 = Dict_ofSeqWithMerge((arg_6, arg_1_2) => {
+        const map1_1 = Dict_ofSeqWithMerge((recordType__6, recordType__1_1) => {
             const this$_3 = updateOptions_2;
-            const recordType_1_3 = arg_6;
-            const recordType_2_3 = arg_1_2;
+            const recordType_1_3 = recordType__6;
+            const recordType_2_3 = recordType__1_1;
             switch (this$_3.tag) {
                 case 2:
                     return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_3), getRecordFields(recordType_2_3)));
@@ -859,10 +859,10 @@ ${err.message}`);
                     return recordType_2_3;
             }
         }, map((v_2) => [mapping_6(v_2), v_2], list1_1));
-        const map2_1 = Dict_ofSeqWithMerge((arg_2_2, arg_3_2) => {
+        const map2_1 = Dict_ofSeqWithMerge((recordType__2_1, recordType__3_1) => {
             const this$_4 = updateOptions_2;
-            const recordType_1_4 = arg_2_2;
-            const recordType_2_4 = arg_3_2;
+            const recordType_1_4 = recordType__2_1;
+            const recordType_2_4 = recordType__3_1;
             switch (this$_4.tag) {
                 case 2:
                     return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_4), getRecordFields(recordType_2_4)));
@@ -927,7 +927,7 @@ export function Study_update_7312BC8B(study) {
         let Materials;
         const v = Study_getMaterials_7312BC8B(study);
         Materials = Option_fromValueWithDefault(StudyMaterials_get_empty(), v);
-        const Assays = map_1((list) => map((arg_3) => ((arg_2) => Assay_updateProtocols(protocols, arg_2))(Assay_update_722A269D(arg_3)), list), study.Assays);
+        const Assays = map_1((list) => map((arg) => ((assay_1) => Assay_updateProtocols(protocols, assay_1))(Assay_update_722A269D(arg)), list), study.Assays);
         const Protocols = Option_fromValueWithDefault(empty(), protocols);
         const Factors = Option_fromValueWithDefault(empty(), Study_getFactors_7312BC8B(study));
         const CharacteristicCategories = Option_fromValueWithDefault(empty(), Study_getCharacteristics_7312BC8B(study));

package/ISA/ISA/JsonTypes/StudyMaterials.js

@@ -1,10 +1,10 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Source_$reflection } from "./Source.js";
-import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Sample_$reflection } from "./Sample.js";
 import { Material_$reflection } from "./Material.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { empty } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { empty } from "../../../fable_modules/fable-library.4.4.1/List.js";
 
 export class StudyMaterials extends Record {
     constructor(Sources, Samples, OtherMaterials) {

package/ISA/ISA/JsonTypes/Value.js

@@ -1,11 +1,11 @@
-import { Union, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Union, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { union_type, string_type, float64_type, int32_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { parse } from "../../../fable_modules/fable-library.4.1.4/Double.js";
-import { parse as parse_1 } from "../../../fable_modules/fable-library.4.1.4/Int32.js";
-import { map, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { union_type, string_type, float64_type, int32_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { parse } from "../../../fable_modules/fable-library.4.4.1/Double.js";
+import { parse as parse_1 } from "../../../fable_modules/fable-library.4.4.1/Int32.js";
+import { map, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { AnnotationValue_toString_Z6FAD7738 } from "./AnnotationValue.js";
 
 export class Value extends Union {

package/ISA/ISA/Regex.js

@@ -1,6 +1,6 @@
-import { create, match } from "../../fable_modules/fable-library.4.1.4/RegExp.js";
-import { value as value_1, map, some } from "../../fable_modules/fable-library.4.1.4/Option.js";
-import { parse } from "../../fable_modules/fable-library.4.1.4/Int32.js";
+import { create, match } from "../../fable_modules/fable-library.4.4.1/RegExp.js";
+import { value as value_1, map, some } from "../../fable_modules/fable-library.4.4.1/Option.js";
+import { parse } from "../../fable_modules/fable-library.4.4.1/Int32.js";
 
 export const Pattern_ExcelNumberFormat = `"(?<${"numberFormat"}>(.*?))"`;
 

package/ISA/ISA.Json/Assay.js

@@ -1,13 +1,13 @@
 import { toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
 import { tryInclude } from "./GEncode.js";
 import { Data_decoder, Data_encoder, Sample_decoder, Sample_encoder } from "./Data.js";
 import { MaterialAttribute_decoder, MaterialAttribute_encoder, Material_decoder, Material_encoder } from "./Material.js";
 import { string, list as list_1, object as object_23 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
 import { AssayMaterials } from "../ISA/JsonTypes/AssayMaterials.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
 import { Process_decoder, Process_encoder } from "./Process.js";
@@ -105,8 +105,8 @@ export function Assay_toStringLD(a) {
 }
 
 export function ArcAssay_fromJsonString(s) {
-    const arg = fromJsonString(uncurry2(Assay_decoder(ConverterOptions_$ctor())), s);
-    return ArcAssay.fromAssay(arg);
+    const a = fromJsonString(uncurry2(Assay_decoder(ConverterOptions_$ctor())), s);
+    return ArcAssay.fromAssay(a);
 }
 
 export function ArcAssay_toJsonString(a) {

package/ISA/ISA.Json/Comment.js

@@ -1,10 +1,10 @@
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
-import { value as value_13 } from "../../fable_modules/fable-library.4.1.4/Option.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { value as value_13 } from "../../fable_modules/fable-library.4.4.1/Option.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { toString, nil, object as object_6 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { string, object as object_7 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";

package/ISA/ISA.Json/ConverterOptions.js

@@ -1,4 +1,4 @@
-import { class_type } from "../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { class_type } from "../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class ConverterOptions {
     constructor() {

package/ISA/ISA.Json/Data.js

@@ -1,18 +1,18 @@
 import { DataFile } from "../ISA/JsonTypes/DataFile.js";
 import { toString, object as object_10, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { list as list_1, object as object_11, string } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
 import { ErrorReason } from "../../fable_modules/Thoth.Json.10.1.0/Types.fs.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { decoder as decoder_3, encoder } from "./Comment.js";
 import { fromJsonString, uri, hasUnknownFields } from "./Decode.js";
 import { Data } from "../ISA/JsonTypes/Data.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { MaterialAttributeValue_decoder, MaterialAttributeValue_encoder } from "./Material.js";
 import { Source } from "../ISA/JsonTypes/Source.js";
 import { FactorValue_decoder, FactorValue_encoder } from "./Factor.js";

package/ISA/ISA.Json/Decode.js

@@ -1,9 +1,9 @@
 import { fromString, string } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
-import { printf, toText } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
+import { printf, toText } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { ErrorReason } from "../../fable_modules/Thoth.Json.10.1.0/Types.fs.js";
-import { contains, exists } from "../../fable_modules/fable-library.4.1.4/Seq.js";
-import { stringHash } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { contains, exists } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { stringHash } from "../../fable_modules/fable-library.4.4.1/Util.js";
 
 export function isURI(s) {
     return true;

package/ISA/ISA.Json/Factor.js

@@ -2,14 +2,14 @@ import { Value } from "../ISA/JsonTypes/Value.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
 import { object as object_8, toString, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { array, object as object_9, string, float, int } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
 import { uri, fromJsonString } from "./Decode.js";
-import { equals, uncurry2 } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { equals, uncurry2 } from "../../fable_modules/fable-library.4.4.1/Util.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID, ConverterOptions_$ctor } from "./ConverterOptions.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { tryInclude } from "./GEncode.js";
 import { decoder as decoder_1, encoder } from "./Comment.js";
 import { Factor } from "../ISA/JsonTypes/Factor.js";

package/ISA/ISA.Json/GEncode.js

@@ -1,7 +1,7 @@
-import { value as value_1 } from "../../fable_modules/fable-library.4.1.4/Option.js";
-import { isIterable } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { value as value_1 } from "../../fable_modules/fable-library.4.4.1/Option.js";
+import { isIterable } from "../../fable_modules/fable-library.4.4.1/Util.js";
 import { nil, seq } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { map } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { map } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 
 /**
  * Try to encode the given object using the given encoder, or return Encode.nil if the object is null

package/ISA/ISA.Json/Investigation.js

@@ -1,9 +1,9 @@
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { toString, nil, object as object_24 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { empty as empty_1, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { empty as empty_1, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologySourceReference_decoder, OntologySourceReference_encoder } from "./Ontology.js";
@@ -114,8 +114,8 @@ export function Investigation_toStringLD(i) {
 }
 
 export function ArcInvestigation_fromJsonString(s) {
-    const arg = fromJsonString(uncurry2(Investigation_decoder(ConverterOptions_$ctor())), s);
-    return ArcInvestigation.fromInvestigation(arg);
+    const i = fromJsonString(uncurry2(Investigation_decoder(ConverterOptions_$ctor())), s);
+    return ArcInvestigation.fromInvestigation(i);
 }
 
 export function ArcInvestigation_toJsonString(a) {

package/ISA/ISA.Json/Material.js

@@ -1,12 +1,12 @@
 import { MaterialType } from "../ISA/JsonTypes/MaterialType.js";
 import { toString, object as object_10, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { list as list_1, object as object_11, string } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
 import { ErrorReason } from "../../fable_modules/Thoth.Json.10.1.0/Types.fs.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
@@ -14,7 +14,7 @@ import { hasUnknownFields, fromJsonString, uri } from "./Decode.js";
 import { MaterialAttribute } from "../ISA/JsonTypes/MaterialAttribute.js";
 import { Value_decoder, Value_encoder } from "./Factor.js";
 import { MaterialAttributeValue } from "../ISA/JsonTypes/MaterialAttributeValue.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { Material } from "../ISA/JsonTypes/Material.js";
 
 export function MaterialType_encoder(options, value) {

package/ISA/ISA.Json/Ontology.js

@@ -1,11 +1,11 @@
 import { AnnotationValue } from "../ISA/JsonTypes/AnnotationValue.js";
 import { toString, object as object_10, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { array, object as object_11, string, float, int } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { decoder as decoder_1, encoder } from "./Comment.js";
@@ -13,7 +13,7 @@ import { fromJsonString, uri } from "./Decode.js";
 import { OntologySourceReference } from "../ISA/JsonTypes/OntologySourceReference.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { OntologyAnnotation } from "../ISA/JsonTypes/OntologyAnnotation.js";
-import { unwrap } from "../../fable_modules/fable-library.4.1.4/Option.js";
+import { unwrap } from "../../fable_modules/fable-library.4.4.1/Option.js";
 
 export function AnnotationValue_encoder(options, value) {
     if (value instanceof AnnotationValue) {

package/ISA/ISA.Json/Person.js

@@ -1,11 +1,11 @@
-import { tryPick } from "../../fable_modules/fable-library.4.1.4/Array.js";
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { tryPick } from "../../fable_modules/fable-library.4.4.1/Array.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { Person } from "../ISA/JsonTypes/Person.js";
 import { toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
@@ -116,8 +116,8 @@ export function genID(p) {
 
 export function encoder(options, oa) {
     let oa_1;
-    const arg = oa;
-    oa_1 = Person.setCommentFromORCID(arg);
+    const person = oa;
+    oa_1 = Person.setCommentFromORCID(person);
     return object_22(choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, nil)) {
@@ -174,15 +174,15 @@ export function encoder(options, oa) {
 export function decoder(options) {
     return (path_10) => ((v) => object_23((get$) => {
         let objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_19, decoder_1, objectArg_9, arg_21, decoder_2, objectArg_10;
-        let arg_22;
+        let person;
         let ID;
         const objectArg = get$.Optional;
         ID = objectArg.Field("@id", uri);
         let FirstName;
         const objectArg_1 = get$.Optional;
         FirstName = objectArg_1.Field("firstName", string);
-        arg_22 = (new Person(ID, void 0, (objectArg_2 = get$.Optional, objectArg_2.Field("lastName", string)), FirstName, (objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("email", string)), (objectArg_5 = get$.Optional, objectArg_5.Field("phone", string)), (objectArg_6 = get$.Optional, objectArg_6.Field("fax", string)), (objectArg_7 = get$.Optional, objectArg_7.Field("address", string)), (objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", string)), (arg_19 = ((decoder_1 = OntologyAnnotation_decoder(options), (path_8) => ((value_8) => array_1(uncurry2(decoder_1), path_8, value_8)))), (objectArg_9 = get$.Optional, objectArg_9.Field("roles", uncurry2(arg_19)))), (arg_21 = ((decoder_2 = decoder_3(options), (path_9) => ((value_9) => array_1(uncurry2(decoder_2), path_9, value_9)))), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", uncurry2(arg_21))))));
-        return Person.setOrcidFromComments(arg_22);
+        person = (new Person(ID, void 0, (objectArg_2 = get$.Optional, objectArg_2.Field("lastName", string)), FirstName, (objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("email", string)), (objectArg_5 = get$.Optional, objectArg_5.Field("phone", string)), (objectArg_6 = get$.Optional, objectArg_6.Field("fax", string)), (objectArg_7 = get$.Optional, objectArg_7.Field("address", string)), (objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", string)), (arg_19 = ((decoder_1 = OntologyAnnotation_decoder(options), (path_8) => ((value_8) => array_1(uncurry2(decoder_1), path_8, value_8)))), (objectArg_9 = get$.Optional, objectArg_9.Field("roles", uncurry2(arg_19)))), (arg_21 = ((decoder_2 = decoder_3(options), (path_9) => ((value_9) => array_1(uncurry2(decoder_2), path_9, value_9)))), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", uncurry2(arg_21))))));
+        return Person.setOrcidFromComments(person);
     }, path_10, v));
 }
 

package/ISA/ISA.Json/Process.js

@@ -1,10 +1,10 @@
-import { replace } from "../../fable_modules/fable-library.4.1.4/String.js";
+import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
 import { ProtocolParameter_getNameText_Z3A4310A5 } from "../ISA/JsonTypes/ProtocolParameter.js";
 import { Value_getText_72E9EF0F } from "../ISA/JsonTypes/Value.js";
 import { list as list_2, toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { map, choose } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.1.4/Seq.js";
+import { map, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { Protocol_decoder, Protocol_encoder, ProtocolParameter_decoder, ProtocolParameter_encoder } from "./Protocol.js";
@@ -16,7 +16,7 @@ import { uri, fromJsonString } from "./Decode.js";
 import { ProcessInput } from "../ISA/JsonTypes/ProcessInput.js";
 import { Data_decoder, Sample_decoder, Source_decoder, Source_encoder, Data_encoder, Sample_encoder } from "./Data.js";
 import { Material_decoder, Material_encoder } from "./Material.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.1.4/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
 import { ProcessOutput } from "../ISA/JsonTypes/ProcessOutput.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { decoder as decoder_4, encoder } from "./Comment.js";