@nfdi4plants/arctrl 1.0.0-alpha9 → 1.0.0-beta.2

package/ISA/ISA/JsonTypes/Material.js

@@ -1,9 +1,9 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { choose, empty, length } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { MaterialType_$reflection, MaterialType__get_AsString } from "./MaterialType.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 
 export class Material extends Record {

package/ISA/ISA/JsonTypes/MaterialAttribute.js

@@ -1,7 +1,7 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { bind, map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { bind, map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault } from "../Helper.js";
 
 export class MaterialAttribute extends Record {
@@ -53,7 +53,7 @@ export function MaterialAttribute_toString_Z5F39696D(ma) {
         TermName: "",
         TermSourceREF: "",
     };
-    return defaultArg(map((arg) => OntologyAnnotation.toString(arg), ma.CharacteristicType), value);
+    return defaultArg(map((oa) => OntologyAnnotation.toString(oa), ma.CharacteristicType), value);
 }
 
 /**

package/ISA/ISA/JsonTypes/MaterialAttributeValue.js

@@ -1,11 +1,11 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { bind, defaultArg, map } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { bind, defaultArg, map } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { MaterialAttribute__SetCategory_Z4C0FE73C, MaterialAttribute_create_Z6C54B221, MaterialAttribute__MapCategory_Z69DD836A, MaterialAttribute__get_TryNameText, MaterialAttribute_$reflection, MaterialAttribute__get_NameText } from "./MaterialAttribute.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Value_$reflection } from "./Value.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class MaterialAttributeValue extends Record {
     constructor(ID, Category, Value, Unit) {

package/ISA/ISA/JsonTypes/MaterialType.js

@@ -1,5 +1,5 @@
-import { Union } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { union_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Union } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { union_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class MaterialType extends Union {
     constructor(tag, fields) {

package/ISA/ISA/JsonTypes/OntologyAnnotation.js

@@ -1,13 +1,13 @@
-import { value as value_4, map, defaultArg, bind, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { value as value_4, map, defaultArg, bind, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Pattern_TermAnnotationShortPattern, ActivePatterns_$007CRegex$007C_$007C, tryParseTermAnnotation } from "../Regex.js";
-import { equals, stringHash, int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { equals, stringHash, int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { AnnotationValue_$reflection, AnnotationValue_toString_Z6FAD7738, AnnotationValue_fromString_Z721C83C5 } from "./AnnotationValue.js";
-import { filter, map as map_1, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { filter, map as map_1, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
 import { Option_mapDefault } from "../Helper.js";
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Comment$_$reflection } from "./Comment.js";
 
 export class OntologyAnnotation extends Record {
@@ -70,8 +70,8 @@ export class OntologyAnnotation extends Record {
         return `${"http://purl.obolibrary.org/obo/"}${termSourceRef}_${localTAN}`;
     }
     static fromString(termName, tsr, tan, comments) {
-        const arg_1 = map(AnnotationValue_fromString_Z721C83C5, termName);
-        return OntologyAnnotation.make(void 0, arg_1, tsr, tan, comments);
+        const name = map(AnnotationValue_fromString_Z721C83C5, termName);
+        return OntologyAnnotation.make(void 0, name, tsr, tan, comments);
     }
     static fromTermAnnotation(termAnnotation) {
         const r = value_4(tryParseTermAnnotation(termAnnotation));
@@ -196,8 +196,8 @@ export class OntologyAnnotation extends Record {
     }
     Copy() {
         const this$ = this;
-        const arg_4 = map((array) => map_2((c) => c.Copy(), array), this$.Comments);
-        return OntologyAnnotation.make(this$.ID, this$.Name, this$.TermSourceREF, this$.TermAccessionNumber, arg_4);
+        const comments = map((array) => map_2((c) => c.Copy(), array), this$.Comments);
+        return OntologyAnnotation.make(this$.ID, this$.Name, this$.TermSourceREF, this$.TermAccessionNumber, comments);
     }
     Print() {
         const this$ = this;

package/ISA/ISA/JsonTypes/OntologySourceReference.js

@@ -1,11 +1,11 @@
-import { filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
 import { Option_mapDefault } from "../Helper.js";
-import { map as map_1 } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { map as map_1 } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Comment$_$reflection } from "./Comment.js";
 
 export class OntologySourceReference extends Record {
@@ -74,8 +74,8 @@ export class OntologySourceReference extends Record {
     }
     Copy() {
         const this$ = this;
-        const arg_4 = map_1((array) => map_2((c) => c.Copy(), array), this$.Comments);
-        return OntologySourceReference.make(this$.Description, this$.File, this$.Name, this$.Version, arg_4);
+        const comments = map_1((array) => map_2((c) => c.Copy(), array), this$.Comments);
+        return OntologySourceReference.make(this$.Description, this$.File, this$.Name, this$.Version, comments);
     }
 }
 

package/ISA/ISA/JsonTypes/Person.js

@@ -1,13 +1,13 @@
-import { append as append_1, tryPick, map2, map, tryFind } from "../../../fable_modules/fable-library.4.1.4/Array.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { singleton, append } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { append as append_1, tryPick, map2, map, tryFind } from "../../../fable_modules/fable-library.4.4.1/Array.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { singleton, append } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
 import { Option_fromValueWithDefault, Option_mapDefault } from "../Helper.js";
-import { endsWith } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { map as map_1, defaultArg, value as value_2 } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { endsWith } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { map as map_1, defaultArg, value as value_2 } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Comment$_$reflection, Comment$ } from "./Comment.js";
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
 
 export class Person extends Record {
@@ -126,8 +126,8 @@ export class Person extends Record {
     Copy() {
         const this$ = this;
         const nextComments = map_1((array) => map((c) => c.Copy(), array), this$.Comments);
-        const arg_10 = map_1((array_1) => map((c_1) => c_1.Copy(), array_1), this$.Roles);
-        return Person.make(this$.ID, this$.ORCID, this$.LastName, this$.FirstName, this$.MidInitials, this$.EMail, this$.Phone, this$.Fax, this$.Address, this$.Affiliation, arg_10, nextComments);
+        const roles = map_1((array_1) => map((c_1) => c_1.Copy(), array_1), this$.Roles);
+        return Person.make(this$.ID, this$.ORCID, this$.LastName, this$.FirstName, this$.MidInitials, this$.EMail, this$.Phone, this$.Fax, this$.Address, this$.Affiliation, roles, nextComments);
     }
 }
 

package/ISA/ISA/JsonTypes/Process.js

@@ -1,20 +1,20 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { zip, tryPick, map as map_1, tryFind, append, collect, choose, empty, length } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { map, value as value_4, bind, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { zip, tryPick, map as map_1, tryFind, append, collect, choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { map, value as value_4, bind, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Protocol_$reflection } from "./Protocol.js";
 import { ProcessParameterValue_$reflection } from "./ProcessParameterValue.js";
 import { ProcessInput_tryMaterial_102B6859, ProcessInput_trySample_102B6859, ProcessInput_tryData_102B6859, ProcessInput_trySource_102B6859, ProcessInput_tryGetCharacteristicValues_102B6859, ProcessInput_$reflection } from "./ProcessInput.js";
 import { ProcessOutput_tryGetFactorValues_11830B70, ProcessOutput_tryGetCharacteristicValues_11830B70, ProcessOutput_$reflection } from "./ProcessOutput.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { create, match } from "../../../fable_modules/fable-library.4.1.4/RegExp.js";
-import { parse } from "../../../fable_modules/fable-library.4.1.4/Int32.js";
-import { List_distinct } from "../../../fable_modules/fable-library.4.1.4/Seq2.js";
-import { safeHash, equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { create, match } from "../../../fable_modules/fable-library.4.4.1/RegExp.js";
+import { parse } from "../../../fable_modules/fable-library.4.4.1/Int32.js";
+import { List_distinct } from "../../../fable_modules/fable-library.4.4.1/Seq2.js";
+import { safeHash, equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { ProtocolParameter_get_empty } from "./ProtocolParameter.js";
 import { Update_UpdateOptions, Option_fromValueWithDefault } from "../Helper.js";
-import { map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
 
 export class Process extends Record {
@@ -160,7 +160,7 @@ export function Process_getCharacteristics_716E708F(p) {
  * Returns the factor values of the samples of the process
  */
 export function Process_getFactorValues_716E708F(p) {
-    return List_distinct(collect((arg_1) => defaultArg(ProcessOutput_tryGetFactorValues_11830B70(arg_1), empty()), defaultArg(p.Outputs, empty())), {
+    return List_distinct(collect((arg) => defaultArg(ProcessOutput_tryGetFactorValues_11830B70(arg), empty()), defaultArg(p.Outputs, empty())), {
         Equals: equals,
         GetHashCode: safeHash,
     });

package/ISA/ISA/JsonTypes/ProcessInput.js

@@ -1,12 +1,12 @@
-import { Union, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Union, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { Source_create_7A281ED9, Source_getUnits_Z28BE5327, Source_setCharacteristicValues, Source_get_empty, Source_$reflection } from "./Source.js";
 import { Sample_create_E50ED22, Sample_getUnits_Z29207F1E, Sample_setCharacteristicValues, Sample_$reflection } from "./Sample.js";
 import { Data_create_Z326CF519, Data_$reflection } from "./Data.js";
 import { Material_create_Z31BE6CDD, Material_getUnits_Z42815C11, Material_setCharacteristicValues, Material_$reflection } from "./Material.js";
-import { union_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { unwrap, map, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { empty, choose } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { union_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { unwrap, map, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { empty, choose } from "../../../fable_modules/fable-library.4.4.1/List.js";
 import { DataFile } from "./DataFile.js";
 
 export class ProcessInput extends Union {

package/ISA/ISA/JsonTypes/ProcessOutput.js

@@ -1,11 +1,11 @@
-import { Union, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Union, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { Sample_create_E50ED22, Sample_getUnits_Z29207F1E, Sample_setFactorValues, Sample_get_empty, Sample_$reflection } from "./Sample.js";
 import { Data_create_Z326CF519, Data_$reflection } from "./Data.js";
 import { Material_create_Z31BE6CDD, Material_getUnits_Z42815C11, Material_$reflection } from "./Material.js";
-import { union_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { unwrap, map, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { empty, choose } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { union_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { unwrap, map, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { empty, choose } from "../../../fable_modules/fable-library.4.4.1/List.js";
 import { DataFile } from "./DataFile.js";
 
 export class ProcessOutput extends Union {

package/ISA/ISA/JsonTypes/ProcessParameterValue.js

@@ -1,11 +1,11 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { bind, defaultArg, map } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { bind, defaultArg, map } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { ProtocolParameter__SetCategory_Z4C0FE73C, ProtocolParameter_create_Z6C54B221, ProtocolParameter__MapCategory_Z69DD836A, ProtocolParameter__get_TryNameText, ProtocolParameter_$reflection, ProtocolParameter__get_NameText } from "./ProtocolParameter.js";
-import { record_type, option_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, option_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Value_$reflection } from "./Value.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class ProcessParameterValue extends Record {
     constructor(Category, Value, Unit) {

package/ISA/ISA/JsonTypes/ProcessSequence.js

@@ -1,12 +1,12 @@
-import { List_groupBy, List_distinct } from "../../../fable_modules/fable-library.4.1.4/Seq2.js";
-import { singleton, zip, map, empty, collect, concat, filter, choose } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { value as value_3, defaultArg, bind } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { arrayHash, equalArrays, comparePrimitives, safeHash, equals, stringHash } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { List_groupBy, List_distinct } from "../../../fable_modules/fable-library.4.4.1/Seq2.js";
+import { singleton, zip, map, empty, collect, concat, filter, choose } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { value as value_4, defaultArg, bind } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { arrayHash, equalArrays, comparePrimitives, safeHash, equals, stringHash } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { Process_updateProtocol, Process_getMaterials_716E708F, Process_getSamples_716E708F, Process_getSources_716E708F, Process_getData_716E708F, Process_getUnits_716E708F, Process_getFactors_716E708F, Process_tryGetOutputsWithFactorBy, Process_tryGetOutputsWithCharacteristicBy, Process_tryGetInputsWithCharacteristicBy, Process_getCharacteristics_716E708F, Process_getParameters_716E708F, Process_tryGetOutputsWithParameterBy, Process_tryGetInputsWithParameterBy } from "./Process.js";
-import { FSharpSet__Contains, ofList } from "../../../fable_modules/fable-library.4.1.4/Set.js";
+import { FSharpSet__Contains, ofList } from "../../../fable_modules/fable-library.4.4.1/Set.js";
 import { ProcessOutput__get_Name, ProcessOutput_getName_11830B70 } from "./ProcessOutput.js";
 import { ProcessInput__get_Name, ProcessInput_getName_102B6859 } from "./ProcessInput.js";
-import { FSharpMap__TryFind, ofList as ofList_1 } from "../../../fable_modules/fable-library.4.1.4/Map.js";
+import { FSharpMap__TryFind, ofList as ofList_1 } from "../../../fable_modules/fable-library.4.4.1/Map.js";
 
 /**
  * Returns the names of the protocols the given processes impelement
@@ -67,14 +67,14 @@ export function filterByProtocolName(protocolName, processSequence) {
  * If the processes contain a process implementing the given parameter, return the list of input files together with their according parameter values of this parameter
  */
 export function getInputsWithParameterBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetInputsWithParameterBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetInputsWithParameterBy(predicate, p), processSequence));
 }
 
 /**
  * If the processes contain a process implementing the given parameter, return the list of output files together with their according parameter values of this parameter
  */
 export function getOutputsWithParameterBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetOutputsWithParameterBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetOutputsWithParameterBy(predicate, p), processSequence));
 }
 
 /**
@@ -101,21 +101,21 @@ export function getCharacteristics(processSequence) {
  * If the processes contain a process implementing the given parameter, return the list of input files together with their according parameter values of this parameter
  */
 export function getInputsWithCharacteristicBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetInputsWithCharacteristicBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetInputsWithCharacteristicBy(predicate, p), processSequence));
 }
 
 /**
  * If the processes contain a process implementing the given parameter, return the list of output files together with their according parameter values of this parameter
  */
 export function getOutputsWithCharacteristicBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetOutputsWithCharacteristicBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetOutputsWithCharacteristicBy(predicate, p), processSequence));
 }
 
 /**
  * If the processes contain a process implementing the given factor, return the list of output files together with their according factor values of this factor
  */
 export function getOutputsWithFactorBy(predicate, processSequence) {
-    return concat(choose((arg_1) => Process_tryGetOutputsWithFactorBy(predicate, arg_1), processSequence));
+    return concat(choose((p) => Process_tryGetOutputsWithFactorBy(predicate, p), processSequence));
 }
 
 /**
@@ -153,7 +153,7 @@ export function getFinalOutputs(processSequence) {
  * Returns the initial inputs final outputs of the processSequence, to which no processPoints
  */
 export function getRootInputOf(processSequence, sample) {
-    const mappings = ofList_1(map((tupledArg) => [tupledArg[0], map((tuple_1) => tuple_1[1], tupledArg[1])], List_groupBy((tuple) => tuple[0], collect((p) => List_distinct(zip(map(ProcessOutput__get_Name, value_3(p.Outputs)), map(ProcessInput__get_Name, value_3(p.Inputs))), {
+    const mappings = ofList_1(map((tupledArg) => [tupledArg[0], map((tuple_1) => tuple_1[1], tupledArg[1])], List_groupBy((tuple) => tuple[0], collect((p) => List_distinct(zip(map(ProcessOutput__get_Name, value_4(p.Outputs)), map(ProcessInput__get_Name, value_4(p.Inputs))), {
         Equals: equalArrays,
         GetHashCode: arrayHash,
     }), processSequence), {
@@ -184,7 +184,7 @@ export function getRootInputOf(processSequence, sample) {
  * Returns the final outputs of the processSequence, which point to no further nodes
  */
 export function getFinalOutputsOf(processSequence, sample) {
-    const mappings = ofList_1(map((tupledArg) => [tupledArg[0], map((tuple_1) => tuple_1[1], tupledArg[1])], List_groupBy((tuple) => tuple[0], collect((p) => List_distinct(zip(map(ProcessInput__get_Name, value_3(p.Inputs)), map(ProcessOutput__get_Name, value_3(p.Outputs))), {
+    const mappings = ofList_1(map((tupledArg) => [tupledArg[0], map((tuple_1) => tuple_1[1], tupledArg[1])], List_groupBy((tuple) => tuple[0], collect((p) => List_distinct(zip(map(ProcessInput__get_Name, value_4(p.Inputs)), map(ProcessOutput__get_Name, value_4(p.Outputs))), {
         Equals: equalArrays,
         GetHashCode: arrayHash,
     }), processSequence), {
@@ -250,6 +250,6 @@ export function getMaterials(processSequence) {
 }
 
 export function updateProtocols(protocols, processSequence) {
-    return map((arg_1) => Process_updateProtocol(protocols, arg_1), processSequence);
+    return map((p) => Process_updateProtocol(protocols, p), processSequence);
 }
 

package/ISA/ISA/JsonTypes/Protocol.js

@@ -1,14 +1,14 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
 import { ProtocolParameter_$reflection } from "./ProtocolParameter.js";
 import { Component_$reflection } from "./Component.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { empty, filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { empty, filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { defaultArg, map as map_1 } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { defaultArg, map as map_1 } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 
 export class Protocol extends Record {
     constructor(ID, Name, ProtocolType, Description, Uri, Version, Parameters, Components, Comments) {

package/ISA/ISA/JsonTypes/ProtocolParameter.js

@@ -1,7 +1,7 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { bind, map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { bind, map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault } from "../Helper.js";
 
 export class ProtocolParameter extends Record {
@@ -53,7 +53,7 @@ export function ProtocolParameter_toString_Z3A4310A5(pp) {
         TermName: "",
         TermSourceREF: "",
     };
-    return defaultArg(map((arg) => OntologyAnnotation.toString(arg), pp.ParameterName), value);
+    return defaultArg(map((oa) => OntologyAnnotation.toString(oa), pp.ParameterName), value);
 }
 
 /**

package/ISA/ISA/JsonTypes/Publication.js

@@ -1,11 +1,11 @@
-import { filter, map, tryFind, exists, singleton, append } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { filter, map, tryFind, exists, singleton, append } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { map as map_1 } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { map as map_1 } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_mapDefault } from "../Helper.js";
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
 import { Comment$_$reflection } from "./Comment.js";
 
@@ -94,8 +94,8 @@ export class Publication extends Record {
     }
     Copy() {
         const this$ = this;
-        const arg_5 = map_1((array) => map_2((c) => c.Copy(), array), this$.Comments);
-        return Publication.make(this$.PubMedID, this$.DOI, this$.Authors, this$.Title, this$.Status, arg_5);
+        const comments = map_1((array) => map_2((c) => c.Copy(), array), this$.Comments);
+        return Publication.make(this$.PubMedID, this$.DOI, this$.Authors, this$.Title, this$.Status, comments);
     }
 }
 

package/ISA/ISA/JsonTypes/Sample.js

@@ -1,8 +1,8 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { append, choose, empty, length } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { append, choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 import { FactorValue_$reflection } from "./FactorValue.js";
 import { Source_$reflection } from "./Source.js";

package/ISA/ISA/JsonTypes/Source.js

@@ -1,8 +1,8 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { choose, empty, length } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 
 export class Source extends Record {